lowQualScore : 11111 111111111111111111111
lowQualScore : 1 00000 1 555555 3333333 1 2 666666666 222222 3333333333333 2 3333333333333 1 444444444444 7777777777777777 1 444444 1 111 222 333333333 33333 333333333333333333333 1 1 1 11 333333 11111 2222 1 1 1 11111 111111 1 11111111111 1 2222222222222 11111111 55555555555555555555555555555 11111111111
lowQualScore : 6 5 00000 5 6 6 777777 9999999 777 7 6 8 444444444 888888 8888888888888 2 9 4 1 2222222222222 0 1 000000000000 66 3333333333333333 3 2 2 3 3 3 666666 0 5 8 8 111 333 6 6 4 2 444444444 00000 555555555555555555555 5 88 2 2 6 7 6 6 5 4 66 5 5 4 4 22 888 4 666666 7 5 66666 6666 5 6 5 66 9 00000 0 7 66 444444 2 2 333 00000000000 3 9999999999999 555 00000000 22 2 00000000000000000000000000000 00000000000
lowQualScore : . . ..... . . . ...... ....... ... . . . ......... ...... ............. . . . . ............. . . ............ .. ................ . . . . . . ...... . . . . ... ... . . . . ......... ..... ..................... . .. . . . . . . . . .. . . . . .. ... . ...... . . ..... .... . . . .. . ..... . . .. ...... . . ... ........... . ............. ... ........ .. . ............................. ...........
lowQualScore : 0 0 00000 0 0 0 555555 5555555 000 0 0 5 000000000 555555 5555555555555 5 2 5 2 2222222222222 0 2 555555555555 00 3333333333333333 7 5 2 2 0 0 333333 8 0 0 0 777 333 0 0 0 5 000000000 00000 888888888888888888888 0 22 2 0 2 0 0 0 0 1 99 0 0 1 0 44 888 2 666666 4 0 88888 9999 6 7 0 99 4 11111 1 1 99 444444 0 2 777 00000000000 9 9999999999999 666 99999999 88 0 88888888888888888888888888888 66666666666
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAGTCCAAAGTCTTANCAGGTATATATTACTTTTTTATGTTAAGGTAAGAGGTGGTATGTAA---ACATANTCACTTATTACGAATTGATTT-ATATGTATATA-----CGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGCGTGTGTATATACATTTGTGCGTATNTATATGTGCGTGTACATANANATA----TATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTNACTTGTAA-------TAGACATTTCTTAAGA----GAGAAAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAG--AAT-TGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCT-TTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAA---TCACAGTCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGGATATTAAATATAGTGCCTC--A--ATTT----T--TTTC-G------TACCTAGCCCG--AAAAACA-GG---GAGG---------CACCGGCCT---CCCTGT-----------GCCTCAGAGTAGCTACGGGCCT
Reference ( gi|1 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCATTTATGACAATA-----CAGATATGCACTTATGACCATCATAAG------TTTCTAGCCCAAAGTCTTAGTGGAAATATATCATTATTTTAAGTTATGGTAAGAGGTGGTATGTAA---ATATAGTCAATTATTATGAATTAATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTATGTGTGTGTGTATGTATGTTTGTATACATATGTTTGTATGTATGTATATGTGTATATACATATATATG----TATATAATATAATTCATAACTTCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAGCGATCCAGTTCTTATCGAAGTTACTTGTTA-------TAGACATTTCTTAAGA----CAGAAAAAAA-TTCAATTTCTTAACTTCTAGTGTTAGCTTACTTATACTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAATCCTTTGATTGAATTAAATGAGTTGTAAAATATGATCTAAAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTTAG--AAT-TGCCAGC-ATGCACACGATGTTTTTGTCTTCCTATAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGCATAC-TTTCTAAAGTACTGATTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAA---TAACATCCATTTGATTGTAAGCTTACAGACAATTGTCTAGTGAAGTCTAGAATATGCTGGCTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCTTAGCAAAACAAATTAAGACATCGTGTGCTGCCTGGCCAAT--ACTT------CATCTTAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGGATATTAAATATAGTGACTC--A--GTCT----T--TTTC-A------TACCTAGCCCG--AAAAACA-GG---TAAG---------CACTGGCCT---ACCTGT-----------GCCTCAGAGTAGCTACGGGCCT
gi|2 : CAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAG-------TCTTAGCAGATATATATTACT-TTTTATGTTAAGGTAAGAGGTGGTATGTAA---ATATA--CACTTATTACGAATTGATTTGATATGTATATA-----TGCATAT-GTGAAT--ATT------GTGTGTGTGAGTGC----------------GTGCGTATGTATATGTGTGNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNA--TGCA-CTTATCTATCATGCCTATA-AGAC---TTGTTGGTATATCATCAAAAGATACTGCATTTTTCTAACGATCCAGTTCTTGTCGACGTAACTT-TTAATACCGGTAGACATTTCTTAAGAAAAACAAAAAAAAA---CAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCTGTTCAGAACATCATGTATTTTGGAAAACCTTTGATTAAATTAAATGAGTTGTAGAATATGATCTAGAAACTGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAG--AAT-TGCCAGT-ATGCGCACGATGTTTTTGTCTTCCCGTAGTTTGTGGTTTATATGGGATAATGTT-------------ATACTGTCCGCACGTTGGTATAT---TAAACCTAACATGCTTTCAGAACGAATCT-TTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTC-------ACAGTCTTTTGGTTGTAAGTTAACAGACAATGGTC--------------------------AAAACAGCAGCAATAATAAAATCAAAGTTTTCAATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-AAATAGTTTTAAAATGTAA---CA-----------AGGATATTAAATATAGTGCC-------------------TTC-A------TACCTAGCCCG--AAAAACA-GG---GAGA---------CACTAGCCT---CCCTGT-----------GCCTCAGAGTAGCTACGGGCCT
gi|9 : cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn------TTTCTAGTCCAAAGTCTTATTAGGTATATATTATTTTTTT---------TAAG---------GTAA--------GTCACTTATTGCGAATTGATTTTATATGTA-------------TAT-ATGCAT--AT---------GTGTAT--ANNNNNNNNNNNNNNNNNNNNNNNNNNNTTACAT-TACAT-TACATAAATAT------ATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGACTTGTTG---GTATATCATCAAAAGGTACTGCATTTTTCCAACGATCC
gi|23 : TATATAA---ACATAATTA-TTATTATGA--TCATTT--TATGCACATG-----CATGTATTGTGTATGTATTGTGTGTGTGTGTGTGTGTG
gi|14 : TGTAATTAACATATTCA----TTAT---TTAATAT-ATATCTATATAATTATTGCATAT-GTGTTT--TTTACATGTATGTGTATGTATTTGTGTGTATATACATTTATATGTATATATGTGTGTGTGT
gi|3 : aaattgttgcaagcgtgcTGTGTGTGTACATATAAATACCTTTATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAATTACTTGTAA-------TAGACATTTCTTAAGA----GAGAAAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTA-TTTAGAAAACCTTTGATCAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGAAGTCAGTAACAGCCTCAA--AAT-TGCCAGC-ATGCGCACGATGTTATTGT-----------TCATGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATTGTCGTCACGTTGGTATAA---TAAACACCACATGCTTTCAGAACAAAGCT-TTTCTAAAGTACTGAATAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAA---TCACAGTCTTTTGATTGTAAGCTTACAGACAATAGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTCGTGTGCT--GCCTGACCAAT----ACTTCA---GCTGAGTATC--AT--AATT------TAT-TTAGT-------TTT-A----------AAATGTAA---CA-----------AGGATATTAAGTATAGTGCCTC--A--ATTT----T--GCTC-ATACATGTACCTAGCCCG--AAAAACA-GG----AGG---------CACTGGCCT---CCCTGT-----------GCCTCAGAGTAGCTACTGGCCTttg
gi|4 : TCTTAACTGCA-CTTATCTAACACGCCTATA-AGGC---TTGTTGGTATATCATAAAAAGATACCGCATTTTTCCAACGATCCAGTTCTTGTCGCAGTAACTTGTAA-------TATACATTTCTTAAGA----GAGAAAAAA---------------TTTCTGGTGTTAGCCTACTTGTGTTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAAACCTTTGATTAAATTATATGAGTTGTAAAATATGATCTAGAAACGGGTAAATTTAATTTA-----AAGTAGTCTGTAACAGCCTCAG--AAT-TGCCAGC-TTGCGCACGATATTTTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATCA---TAAACCCT-CGTGCTTTCAGAACGAAGCT-TTTCTAAAGTACTGACTAATTTCTAGCTTCAATG-TGGGCTTGCAGTCAATCCTAGTGTTTTTTTTATTGTAAGCTTACAGACACTAGTCTGCTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATACAATCAAAGTTTTCGATCCCTATCGGAA-----TAGG----------------GACCAAT--ACTT------TACCTGAGTTTCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGGGTATTAAATACAGTGCCTC--A--A--T----T--CTTC--------TACCTCGCCCGAAAAAAACA-GG----AAGC--------CACCGGCCT---CCCTGT-----------AAATCAGAGTAGTTACGGGC
gi|25 : CATTACTGCAATTTTTCTAACCCGCCTATATAAAC---TT------ATATCAACTAAAGACACTGCTTTTTTCGAACGATCCa
gi|5 : ---TTG---GTATCTCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGACGAAATTACTTGTAA-------TAGACATTTCTTAAGA----GAGAAAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATATCACCTGGTAGTAACAAACACCCATTCAGAACATCATGTATTTCGGAAAACATTTGATTAAATTAAATGAGTTGTAAAATATTATCTAGAAACGGGTAAATTTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAG--AAT-TGCCAGC-ATGGGCACGATGTTATTGTCTTTCCGTACTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCAGCACGTTGGTATTA---TAAACCCCACATGCTTTCAGAACAAAGCT-TTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAA---TCACAGTCTTTTGATTGTAGGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATTAAAGTTTTCCATCCCTAGCAAAATAAATTGACCCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGGATATTAAATATAGTGCCTC--A--ATTT----T--GCTC-A------TATCTAGCCTG--AAAAATA-GG---GAGG---------CACTGGCCT---TCCTGT-----------GCCTCAGAGTAACTTCGGGCCT
gi|6 : TATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAG--AAT-TGCCAGC-ATGCGCACGATGTTATTGTCTTCCCGTAGCTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATAGTCGGCACGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCT-TTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAA---TCGCAGTCTTTTGATGGTAAGC-------------TCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATAAAAGTTTTCCATCCAGAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGGATATTCAATATAGTGCCTC--A--ATTT----T--GCTC-A------TACCTAGCTCA--AAAAACA-GG---GAGG---------CACTAGCCT---CCCTGT-----------G-CTCAGAGTAGTTACGGGCCT
gi|7 : TAGAAACGGGTAAAATTAATTTATTTTGAAGTAGTCAGTAACAGCCTCAG--AAT-TGCCAGC-ATGCACACGATGTTATTGTCTTCCCGTAGTTCGTGGTTTATATTGGATAATGTCCAGTGAGGATGCAATACAGTCGGCATGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCT-TTTCTAAAGTACAGACTAATTTCTAGCTTCAGCG-TAGGCTTGTAGTCAA---TCACAGTCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGATCAAAACAG-ATCA-----AAGATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTA------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGGATATTAAATATAGTGCCTC--A--ATTT----T--GCTC-A------TAACTAGCCCG--AAAAATAGGG---GAGG---------CA----CCT---CCCTGT-----------GCCTCAGAGTAGCTATAGGCCT
gi|8 : AATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAG--AAT-TGCCAGC-ATGCGCACGATGTTTTTGTCTTCCCGTAGGTCGTGGTTTACATGGGATAATGTCCAGTGAGGAGGCAATACTGTCGGCACGTTGGTATAATAATAAACCCCACGTGCTTTCAGAACGAAGCT-TTTCTAAAGTACTAACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAA---TCACAGTCTTTTAGTTGTAAGCTTACAGACAATGATCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATGATAAAATTAAA-TTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ATTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGGATATGCAATATAGTGCCTC--A--ATTT----G--TTTC-A------TACCTAGCCCG--AAAAACA-GG---
gi|10 : AGTCTTAGTAGATCTGTCACCGATGCGCATGATGTTTTTGTCTTCCTGCAGTTTGTGATTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTTGTATAA---TAAACACGACATGCTTTCAGAACG-ACGCTTTTCTAAAGTACTGACTATTTTTTAGTTTCAGTGTTGGAGTAGTGGTTAGT--TAACA
gi|11 : agtccaaAGCAAAAAACAT-GAGGCATTATATGATGCCTGACTTGTGTAGTTGTATAGTGTCTGAGTATTAAAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGGATATTTAATATAGTGACTC--A--G-CTGAAATGATTTC-G------TACCTAGTCCG--AAAAACA-GG---AAGG---------AATTAA----------GA-----------GCCTTAGAGTAG-TACGGGCCTgatcgtctacatattcagacacacaaacaa
gi|16 : aatagaagcgttgctaaacaaATTATAATTT-ATTTAGTTTCAAAATGCAACACCA-----------AGGATATTAAATATAGTGTCTCA-A--ATCT----T--GTTC-A------TACCTAGCCCG--AACAGCA-GG---GAGG--------------------------------------GTCTCAGAGTAGCTACGGGCCT
gi|17 : ATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAAACATTAAATATAGTGCCTC--AAAGT-T----T--TTTC-G------TACTTAGCACT--AAAAACA-G-----------------------TCT----CCTGT-----------GCCTCAGAGTAGTTACGGGCC
gi|15 : ATAATTG-ATTTAGTTTTAAAATGTAA---CACCAAGGATTCAAGGATATTAAATATAATGTTTC--A---TAT----T--TTTCTG------TACCTAGCCCG--AAAAACA-GG------G---------CATCGGCCT---CCCTGG-----------ACATCAGGGTAACAACGGGCCT
gi|13 : ATAATTT-ATTTAGTTTTGAAATACAA---CA-----------AAAACATTAAATGTAGTGCCTC--AACGT-T----T--TTTC-G------TACCTGGCACT--AAAAACA-GGG--TGGGAGGGGGGGTCACCGGCCT---CCCTGTGCCCTCCCTGTGCCTCAGAGTAGCTACGGGC
gi|20 : tATAATTTTGTTTAGTTTTAAAATGCAA---CA-----------AGAATGTTAAATATAGTGCCTC--A--AATG----T--TGTC-C------TAACAAGTCCG--AAAAACA-G----------------------------------------------ACCTCAGAGTAGCTACGGGCCT
gi|26 : tATTATTT-ATTTAGTTT-AAAATGCAA---CA-----------------TT--------------------TTT----T--TTTC-G------TACCTAGCCCG--AAAAACA-GG---GAGG---------CACTGGC
gi|18 : tTAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAAACATTAAATATAGTGCCTCAAA--GTA-----T--TTTC-G------TACTTAGCACT--AAAAACA--G---T------------------CC-----CCTGT-----------GCCTCAGAGTAGCTACGGGCC
gi|12 : AATTT-GTTTTGTTTTAAAATGCAA---CA-----------AGGATGTTAAATATAGTGCCTCA-A--ATTG----T--GTTC-G------TACCTAGTACG--AAAAACT-GG---GAGG---------CACGTGCCTGGAAATTGT-----------GC
gi|19 : aAATTT-ATTTAGTTTTAAAATACAA---CA-----------TAAACATTAAGTATATTGCCTC--AACGT-T----T--TTTC-G------TACCTAGCACT--AATAACA-AG---GAGG---------T-----------------------------CCTCAGAGTAGCTACGGGCgtttcatttagttccaacacaaatgatgtaaagcattgcgtcacgcggtatttact
gi|21 : ATTT-ATTTAGTTTTAAAATGCAA---CA--------------------------------C--A----TT----T--TTTC-G------TACCTAGCCCG--AAAAACA-GG---GAAG---------CACCGGCCT---CCCTGT-----------GCCTCAGAGTAGCTTCGGGCCT
gi|24 : AATTTAT---TA-----------AGGATATTAAATATAGTACCTC--A--ACTT----TG-TTTC-G------TACCTAGACCG--AACAAGA-GG---T-GG---------CACCGACCT---A
gi|22 : t--AAAAACA-GGGAACAAA---------AAAAGGCTT----CCTGG-----------GCCTCAGAATAGCCACGGGCCTgt
gi|28 : tttagttttaaaatgcaacacggcgttataatCCT---CCCTGT-----------GCCTCAGAGTAGCTACGGGC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|27 ): GTGTTTTTCACATTTTTGCATGTGTGTGTGTGTGTGTATATATATAGACATACATGTGTATGTGTTTAT
Alignments
lowQualScore : 22222 222222 222 111 1 1 22 222222 11 333333333333333333333 22222222 111 222 222222 1111 22222222 1 111111 111111111111 11111111111
lowQualScore : 2 77777 2 999999 6 11 0 0 222 7 444 1 1 5 55 66 1 44 222222 8 11 66 22 777777777777777777777 3 7 0 1 22222222 0 0 6 6 000 000 1 333333 8 0000 99999999 0 1 3 4 1 777 2 4 4 777 6 0 0 3 1 0 66 222222 2 333 99999999999 4444 5 1 777 333 444 555555 22 6666 11 444444444444 00000000000
lowQualScore : . ..... . ...... . .. . . ... . ... . . . .. .. . .. ...... . .. .. .. ..................... . . . . ........ . . . . ... ... . ...... . .... ........ . . . . . ... . . . ... . . . . . . .. ...... . ... ........... .... . . ... ... ... ...... .. .... .. ............ ...........
lowQualScore : 5 55555 5 555555 7 77 7 7 333 3 000 4 6 0 22 22 4 88 888888 0 00 88 22 666666666666666666666 8 8 4 0 22222222 8 8 7 7 000 000 0 000000 0 6666 00000000 0 4 2 4 0 888 7 4 4 888 5 1 1 4 9 1 11 888888 1 555 00000000000 0000 7 9 777 333 777 555555 66 0000 11 777777777777 66666666666
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTTTA-GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTGTGTATAT----ATACGTTTGTATGTATGTATATGTGTGTGTACATATANATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
Reference ( family-2303 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAGTCCAAAGTCTTANCAGGTATATATTACTTTTTTATGTTAAGGTAAGAGGTGGTATGTAA---ACATANTCACTTATTACGAATTGATTT-ATATGTATATA-----CGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGCGTGTGTAT----ATACATTTGTGCGTATNTATATGTGCGTGTACATANANATA----TATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTNACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|1 : CAAGTTGTTCATTTATGACAATA-----CAGATATGCACTTATGACCATCATAAG------TTTCTAGCCCAAAGTCTTAGTGGAAATATATCATTATTTTAAGTTATGGTAAGAGGTGGTATGTAA---ATATAGTCAATTATTATGAATTAATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTATGTGTGTGTGTATGTATGTTTGTATAC----ATATGTTTGTATGTATGTATATGTGTATATACATATATATG----TATATAATATAATTCATAACTTCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAGCGATCCAGTTCTTATCGAAGTTACTTGTTATA------GACATTTCTTAAGACAGA-AAAAAA-TTCAATTTCTTAACTTCTAGTGTTAGCTTACTTATACTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAATCCTTTGATTGAATTAAATGAGTTGTAAAATATGATCTAAAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTTAGAATTGCCAGC-ATGCACACGATGTTTTTGTCTTCCTATAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGCATACTTTCTAAAGTACTGATTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATA-ACAT---CCATTTGATTGTAAGCTTACAGACAATTGTCTAGTGAAGTCTAGAATATGCTGGCTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCTTAGCAAAACAAATTAAGACATCGTGTGCTGCCTGGCCAAT--ACTT------CATCTTAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGACTC-A-G-T-CT---T--TTTC------ATACCTAGCCCG--AAAAACA----GGTAAG------CACTGGCCTAC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGATCTGTCACCGATGCGCATGATGTTTTTGTCTTCCTGCAGTTTGTGATTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTTGTATAA---TAAACACGACATGCTTTCAGAACGACGCTTTTCTAAAGTACTGACTATTTTTTAGTTTCAGTGTTGGAGTAGTGGTTAGTTAACAG---
gi|11 : agtccaaagtcttagtAGCAAAAAACAT-GAGGCATTATATGATGCCTGACTTGTGTAGTTGTATAGTGTCTGAGTATTAAAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTTAATATAGTGACTC-A-G-C-TGAAATGATTTC------GTACCTAGTCCG--AAAAACA----GGAAGG------AATTAA------------------GAGCCTTAGAGTAG-TACGGGCCTatcgtctacatattcagacacacaaacaa
gi|12 : aatagaagcgttgctaaacaaAATTT-GTTTTGTTTTAAAATGCAA---CA-----------AGG----ATGTTAAATATAGTGCCTCAA-A-T-TG---T--GTTC------GTACCTAGTACG--AAAAACT----GGGAGG------CACGTGCCT
gi|13 : aATAATTT-ATTTAGTTTTGAAATACAA---CA-----------AAA----ACATTAAATGTAGTGCCTC-A-A-CGTT---T--TTTC------GTACCTGGCACT--AAAAACAGGGTGGGAGGGGGGGTCACCGGCCTCCCTGTGCCCTCCCTGTGCCTCAGAGTAGCTACGGGCggaaattgtgcgtttcatttagttccaacacaaatgatgtaaagcattgcgtcacgcggtatttact
gi|14 : tTGTAATTAACATATTCA-TTATT------TAATAT-ATATCTATATAATTATTGCATAT-GTGTTT--TTTACATGTATGTGTATGTATTTGTGTGTAT----ATACATTTATATGTATATATGTGTGTGTGT
gi|15 : aaattgttgcaagcgtgcATAATTG-ATTTAGTTTTAAAATGTAA---CACCAAGGATTCAAGG----ATATTAAATATAATGTTTC-ATA-T-TT---T--TCT-------GTACCTAGCCCG--AAAAACA----G---GG------CATCGGCCTCC-----------CTGGACATCAGGGTAACAACGGGCCTttg
gi|16 : ATTATAATTT-ATTTAGTTTCAAAATGCAACACCA-----------AGG----ATATTAAATATAGTGTCTCAA-A-T-CT---T--GTTC------ATACCTAGCCCG--AACAGCA----GGGAGG--------------------------------GTCTCAGAGTAGCTACGGGCCT
gi|17 : ATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTC-A-AAG-TT---T--TTTC------GTACTTAGCACT--AAAAACA----G-----------------TCTCC------------TGTGCCTCAGAGTAGTTACGGGCC
gi|18 : TAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTCAA-A-G-TA---T--TTTC------GTACTTAGCACT--AAAAACA----G------------------TCCC-----------CTGTGCCTCAGAGTAGCTACGGGCC
gi|19 : AATTT-ATTTAGTTTTAAAATACAA---CA-----------TAA----ACATTAAGTATATTGCCTC-A-A-CGTT---T--TTTC------GTACCTAGCACT--AATAACA----AGGAGG------T--------------------------CCTCAGAGTAGCTACGGGC
gi|2 : CAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAGTC-------TTAGCAGATATATATTACTTTTT-ATGTTAAGGTAAGAGGTGGTATGTAA---ATATA--CACTTATTACGAATTGATTTGATATGTATATA-----TGCATAT-GTGAAT--ATTG------TGTGTGTGAGTGCGTG--------------------CGTATGTATATGTGTGNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNA--TGCA-CTTATCTATCATGCCTATA-AGAC---TTGTTGGTATATCATCAAAAGATACTGCATTTTTCTAACGATCCAGTTCTTGTCGACGTAACTTTTAATACCGGTAGACATTTCTTAAGAAAAACAAAAAAAAACAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCTGTTCAGAACATCATGTATTTTGGAAAACCTTTGATTAAATTAAATGAGTTGTAGAATATGATCTAGAAACTGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGT-ATGCGCACGATGTTTTTGTCTTCCCGTAGTTTGTGGTTTATATGGGATAATGTT-------------ATACTGTCCGCACGTTGGTATAT---TAAACCTAACATGCTTTCAGAACGAATCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAG----TC-ACAG---TCTTTTGGTTGTAAGTTAACAGACAAT--------------------------GGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCAATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-AAATAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCC------------------TTC------ATACCTAGCCCG--AAAAACA----GGGAGA------CACTAGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|20 : cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAATTTTGTTTAGTTTTAAAATGCAA---CA-----------AGA----ATGTTAAATATAGTGCCTC-A-A-A-TG---T--TGTC------CTAACAAGTCCG--AAAAACA----G-------------------------------------ACCTCAGAGTAGCTACGGGCCT
gi|21 : tATTT-ATTTAGTTTTAAAATGCAA---CA------------------------------------C-A-----TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAAG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTTCGGGCCT
gi|22 : TTTAGTTTTAAAATGCAA---CA-----------CGGCGTTATAATAAAAACAGGG-----A-A-------------------------------CA--AAAAA---------AGG------C-------TTC-----------CTGGGCCTCAGAATAGCCACGGGCCT
gi|23 : TATATAA---ACATAATTA-TTATTATGA--TCATTT--TATGCACATG-----CATGTATTGTGTATGTATTGTGTGTGTGTGTGTGTGTG
gi|24 : A-----------AGG----ATATTAAATATAGTACCTC-A-A-C-TT---TG-TTTC------GTACCTAGACCG--AACAAGA----GGT-GG------CACCGACCT
gi|25 : taatttattCATTACTGCAATTTTTCTAACCCGCCTATATAAAC---TT------ATATCAACTAAAGACACTGCTTTTTTCGAACGATCCagt
gi|26 : ATTATTT-ATTTAGTTT-AAAATGCAA---CA---------------------TT-------------------T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACTGGC
gi|27 : tTTGCATGTGTGTGTGTGTGTGTATATATATAGACATACATGTGTATGTGTTTAT
gi|28 : gtgtttttcacatttCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGC
gi|3 : TGTGTGTGTACATATAAATACCTTTATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTATTT-AGAAAACCTTTGATCAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGAAGTCAGTAACAGCCTCAAAATTGCCAGC-ATGCGCACGATGTTATTGT-----------TCATGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATTGTCGTCACGTTGGTATAA---TAAACACCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGAATAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATAGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGC---AATA--AT-AAAAT-------------CAAAGT----T------TCGTGTGCTGCCTGACCAAT--ACTT------CAGCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAGTATAGTGCCTC-A-A-T-TT---T--GCTCATACATGTACCTAGCCCG--AAAAACA-----GGAGG------CACTGGCCTCC-----------CTGTGCCTCAGAGTAGCTACTGGCCT
gi|4 : TCTTAACTGCA-CTTATCTAACACGCCTATA-AGGC---TTGTTGGTATATCATAAAAAGATACCGCATTTTTCCAACGATCCAGTTCTTGTCGCAGTAACTTGTAATA------TACATTTCTTAAGAGAGA-AAAAA-------TTTCT--------GGTGTTAGCCTACTTGTGTTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAAACCTTTGATTAAATTATATGAGTTGTAAAATATGATCTAGAAACGGGTAAATTTAATTTA-----AAGTAGTCTGTAACAGCCTCAGAATTGCCAGC-TTGCGCACGATATTTTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATCA---TAAACCCT-CGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAATG-TGGGCTTGCAGTCAATC-CTAGTGTTTTTTTTATTGTAAGCTTACAGACACTAGTCTGCTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATACAATCAAAGTTTTCGATCCCTATCGGAAT------AGG---------------GACCAAT--ACTT------TACCTGAGTTTCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----GTATTAAATACAGTGCCTC-A-A-T-TC---T--TC---------TACCTCGCCCGAAAAAAACA----GGAAGC------CACCGGCCTCC-----------CTGTAAATCAGAGTAGTTACGGGC
gi|5 : ---TTG---GTATCTCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGACGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATATCACCTGGTAGTAACAAACACCCATTCAGAACATCATGTATTTCGGAAAACATTTGATTAAATTAAATGAGTTGTAAAATATTATCTAGAAACGGGTAAATTTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGGGCACGATGTTATTGTCTTTCCGTACTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCAGCACGTTGGTATTA---TAAACCCCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAGGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATTAAAGTTTTCCATCCCTAGCAAAATAAATTGACCCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATATCTAGCCTG--AAAAATA----GGGAGG------CACTGGCCTTC-----------CTGTGCCTCAGAGTAACTTCGGGCCTa
gi|6 : TATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTATTGTCTTCCCGTAGCTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATAGTCGGCACGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-GCAG---TCTTTTGATGGTAAGC-------------TCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATAAAAGTTTTCCATCCAGAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTCAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATACCTAGCTCA--AAAAACA----GGGAGG------CACTAGCCTCC-----------CTGTG-CTCAGAGTAGTTACGGGCCT
gi|7 : TAGAAACGGGTAAAATTAATTTATTTTGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCACACGATGTTATTGTCTTCCCGTAGTTCGTGGTTTATATTGGATAATGTCCAGTGAGGATGCAATACAGTCGGCATGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACAGACTAATTTCTAGCTTCAGCG-TAGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGATCAAAACAG-ATCA-----AAGATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTA------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATAACTAGCCCG--AAAAATAG---GGGAGG------CA----CCTCC-----------CTGTGCCTCAGAGTAGCTATAGGCCT
gi|8 : AATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTTTTGTCTTCCCGTAGGTCGTGGTTTACATGGGATAATGTCCAGTGAGGAGGCAATACTGTCGGCACGTTGGTATAATAATAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTAACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTAGTTGTAAGCTTACAGACAATGATCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATGATAAAATTAAA-TTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ATTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATGCAATATAGTGCCTC-A-A-T-TT---G--TTTC------ATACCTAGCCCG--AAAAACA----GG
gi|9 : TTTCTAGTCCAAAGTCTTATTAGGTATATATTATTTTTTT----TAAGGTAAG----------------------TCACTTATTGCGAATTGATTTTATATGTATATA-----TGCATAT-GTGTAT--ANNNNNNNNNNNNNNNNNNNNNNNNNNNT-------TACATT-----------ACAT-------TACATAAA--TA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGACTTGTTG---GTATATCATCAAAAGGTACTGCATTTTTCCAACGATCC
Alignments
lowQualScore : 22222 222222 22 111 22222 1 22222 11 5555555555555555555555 2222 111 222 222222 1111 22222222 1 111111 111111111111 11111111111
lowQualScore : 1 77777 1 999999 2 99 7 444 1 55555 5 1 5 00000 8 11 2222222222222222222222 0 666 1111 6 6 000 000 1 333333 8 0000 99999999 0 1 3 3 4 1 777 2 4 4 777 6 0 0 3 1 0 66 222222 2 333 99999999999 4444 5 1 777 333 444 555555 22 6666 11 444444444444 00000000000
lowQualScore : . ..... . ...... . .. . ... . ..... . . . ..... . .. ...................... . ... .... . . ... ... . ...... . .... ........ . . . . . . ... . . . ... . . . . . . .. ...... . ... ........... .... . . ... ... ... ...... .. .... .. ............ ...........
lowQualScore : 0 55555 0 555555 5 33 3 000 4 88888 6 4 0 00000 0 00 0000000000000000000000 4 222 2222 7 7 000 000 4 000000 0 6666 00000000 0 4 2 1 4 0 888 7 4 4 888 5 1 1 4 9 1 11 888888 1 555 00000000000 0000 7 9 777 333 777 555555 66 0000 11 777777777777 66666666666
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTTT--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
Reference ( family-2303 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTTTA-GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTGTGTATATATACGTTTGTATGTATGTATATGTGTGTGTACATATANATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|1 : CAAGTTGTTCATTTATGACAATA-----CAGATATGCACTTATGACCATCATAAG------TTTCTAGCCCAAAGTCTTAGTGGAAATATATCATTATTTTAAGTTATGGTAAGAGGTGGTATGTAA---ATATAGTCAATTATTATGAATTAATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTATGTGTGTGTGTATGTATGTTTGTATACATATGTTTGTATGTATGTATATGTGTATATACATATATATG----TATATAATATAATTCATAACTTCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAGCGATCCAGTTCTTATCGAAGTTACTTGTTATA------GACATTTCTTAAGACAGA-AAAAAA-TTCAATTTCTTAACTTCTAGTGTTAGCTTACTTATACTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAATCCTTTGATTGAATTAAATGAGTTGTAAAATATGATCTAAAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTTAGAATTGCCAGC-ATGCACACGATGTTTTTGTCTTCCTATAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGCATACTTTCTAAAGTACTGATTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATA-ACAT---CCATTTGATTGTAAGCTTACAGACAATTGTCTAGTGAAGTCTAGAATATGCTGGCTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCTTAGCAAAACAAATTAAGACATCGTGTGCTGCCTGGCCAAT--ACTT------CATCTTAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGACTC-A-G-T-CT---T--TTTC------ATACCTAGCCCG--AAAAACA----GGTAAG------CACTGGCCTAC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCCAAAGTCTTAGTAGAT
gi|10 : AGATCTGTCACCGATGCGCATGATGTTTTTGTCTTCCTGCAGTTTGTGATTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTTGTATAA---TAAACACGACATGCTTTCAGAACGACGCTTTTCTAAAGTACTGACTATTTTTTAGTTTCAGTGTTGGAGTAGTGGTTAGTTAACAG---ctgtcaccgatgcgcatgatgtttttgtcttcctgcagtttgtgatttacatgggataatgtccagtgaggatgcaatactgtcggcacgtttgtataataaacacgacatgctttcagaacgacgcttttctaaagtactgactattttttagtttcagtgttggagtagtggttagttaacagatcgtctacatattcagacacacaaacaa
gi|11 : agtccaaagtcttagtAGCAAAAAACAT-GAGGCATTATATGATGCCTGACTTGTGTAGTTGTATAGTGTCTGAGTATTAAAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTTAATATAGTGACTC-A-G-C-TGAAATGATTTC------GTACCTAGTCCG--AAAAACA----GGAAGG------AATTAA------------------GAGCCTTAGAGTAG-TACGGGCCTatcgtctacatattcagacacacaaacaa
gi|12 : aatagaagcgttgctaaacaaAATTT-GTTTTGTTTTAAAATGCAA---CA-----------AGG----ATGTTAAATATAGTGCCTCAA-A-T-TG---T--GTTC------GTACCTAGTACG--AAAAACT----GGGAGG------CACGTGCCT
gi|13 : aATAATTT-ATTTAGTTTTGAAATACAA---CA-----------AAA----ACATTAAATGTAGTGCCTC-A-A-CGTT---T--TTTC------GTACCTGGCACT--AAAAACAGGGTGGGAGGGGGGGTCACCGGCCTCCCTGTGCCCTCCCTGTGCCTCAGAGTAGCTACGGGCggaaattgtgcgtttcatttagttccaacacaaatgatgtaaagcattgcgtcacgcggtatttact
gi|14 : tTGTAATTAACATA-T---TCATTAT---TTAATAT-ATATCTATATAATTATTGCATAT-GTGTTT--TTTACATGTATGTGTATGTATTTGTGTGTATATACATTTATATGTATATATGTGTGTGTGT
gi|15 : aaattgttgcaagcgtgcATAATTG-ATTTAGTTTTAAAATGTAA---CACCAAGGATTCAAGG----ATATTAAATATAATGTTTC-ATA-T-TT---T--TCT-------GTACCTAGCCCG--AAAAACA----G---GG------CATCGGCCTCC-----------CTGGACATCAGGGTAACAACGGGCCTttg
gi|16 : ATTATAATTT-ATTTAGTTTCAAAATGCAACACCA-----------AGG----ATATTAAATATAGTGTCTCAA-A-T-CT---T--GTTC------ATACCTAGCCCG--AACAGCA----GGGAGG--------------------------------GTCTCAGAGTAGCTACGGGCCT
gi|17 : ATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTC-A-AAG-TT---T--TTTC------GTACTTAGCACT--AAAAACA----G-----------------TCTCC------------TGTGCCTCAGAGTAGTTACGGGCC
gi|18 : TAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTCAA-A-G-TA---T--TTTC------GTACTTAGCACT--AAAAACA----G------------------TCCC-----------CTGTGCCTCAGAGTAGCTACGGGCC
gi|19 : AATTT-ATTTAGTTTTAAAATACAA---CA-----------TAA----ACATTAAGTATATTGCCTC-A-A-CGTT---T--TTTC------GTACCTAGCACT--AATAACA----AGGAGG------T--------------------------CCTCAGAGTAGCTACGGGC
gi|2 : CAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAGTC-------TTAGCAGATATATATTACTTTTTAT-GTTAAGGTAAGAGGTGGTATGTAA---ATATA--CACTTATTACGAATTGATTTGATATGTATATA-----TGCATAT-GTGAAT--ATTGTGTGTGTGAGTGCGTGCGT----------------------ATGTATATGTGTGNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNA--TGCA-CTTATCTATCATGCCTATA-AGAC---TTGTTGGTATATCATCAAAAGATACTGCATTTTTCTAACGATCCAGTTCTTGTCGACGTAACTTTTAATACCGGTAGACATTTCTTAAGAAAAACAAAAAAAAACAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCTGTTCAGAACATCATGTATTTTGGAAAACCTTTGATTAAATTAAATGAGTTGTAGAATATGATCTAGAAACTGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGT-ATGCGCACGATGTTTTTGTCTTCCCGTAGTTTGTGGTTTATATGGGATAATGTT-------------ATACTGTCCGCACGTTGGTATAT---TAAACCTAACATGCTTTCAGAACGAATCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAG----TC-ACAG---TCTTTTGGTTGTAAGTTAACAGACAAT--------------------------GGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCAATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-AAATAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCC------------------TTC------ATACCTAGCCCG--AAAAACA----GGGAGA------CACTAGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|20 : cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAATTTTGTTTAGTTTTAAAATGCAA---CA-----------AGA----ATGTTAAATATAGTGCCTC-A-A-A-TG---T--TGTC------CTAACAAGTCCG--AAAAACA----G-------------------------------------ACCTCAGAGTAGCTACGGGCCT
gi|21 : tATTT-ATTTAGTTTTAAAATGCAA---CA------------------------------------C-A-----TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAAG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTTCGGGCCT
gi|22 : TTTAGTTTTAAAATGCAA---CA-----------CGGCGTTATAATAAAAACAGGG-----A-A-------------------------------CA--AAAAA---------AGG------C-------TTC-----------CTGGGCCTCAGAATAGCCACGGGCCT
gi|23 : TATATAA---ACATAATTA-TTATTATGA--TCATTT--TATGCACATG-----CATGTATTGTGTATGTATTGTGTGTGTGTGTGTGTGTG
gi|24 : A-----------AGG----ATATTAAATATAGTACCTC-A-A-C-TT---TG-TTTC------GTACCTAGACCG--AACAAGA----GGT-GG------CACCGACCT
gi|25 : taatttattCATTACTGCAATTTTTCTAACCCGCCTATATAAAC---TT------ATATCAACTAAAGACACTGCTTTTTTCGAACGATCCagt
gi|26 : ATTATTT-ATTTAGTTT-AAAATGCAA---CA---------------------TT-------------------T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACTGGC
gi|27 : tTTGCATGTGTGTGTGTGTGTGTATATATATAGAC------ATACATGTGTATGTGT
gi|28 : gtgtttttcacatttCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCttat
gi|3 : TGTGTGTGTACATATAAATACCTTTATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTATTT-AGAAAACCTTTGATCAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGAAGTCAGTAACAGCCTCAAAATTGCCAGC-ATGCGCACGATGTTATTGT-----------TCATGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATTGTCGTCACGTTGGTATAA---TAAACACCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGAATAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATAGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGC---AATA--AT-AAAAT-------------CAAAGT----T------TCGTGTGCTGCCTGACCAAT--ACTT------CAGCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAGTATAGTGCCTC-A-A-T-TT---T--GCTCATACATGTACCTAGCCCG--AAAAACA-----GGAGG------CACTGGCCTCC-----------CTGTGCCTCAGAGTAGCTACTGGCCT
gi|4 : TCTTAACTGCA-CTTATCTAACACGCCTATA-AGGC---TTGTTGGTATATCATAAAAAGATACCGCATTTTTCCAACGATCCAGTTCTTGTCGCAGTAACTTGTAATA------TACATTTCTTAAGAGAGA-AAAAA-------TTTCT--------GGTGTTAGCCTACTTGTGTTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAAACCTTTGATTAAATTATATGAGTTGTAAAATATGATCTAGAAACGGGTAAATTTAATTTA-----AAGTAGTCTGTAACAGCCTCAGAATTGCCAGC-TTGCGCACGATATTTTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATCA---TAAACCCT-CGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAATG-TGGGCTTGCAGTCAATC-CTAGTGTTTTTTTTATTGTAAGCTTACAGACACTAGTCTGCTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATACAATCAAAGTTTTCGATCCCTATCGGAAT------AGG---------------GACCAAT--ACTT------TACCTGAGTTTCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----GTATTAAATACAGTGCCTC-A-A-T-TC---T--TC---------TACCTCGCCCGAAAAAAACA----GGAAGC------CACCGGCCTCC-----------CTGTAAATCAGAGTAGTTACGGGC
gi|5 : ---TTG---GTATCTCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGACGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATATCACCTGGTAGTAACAAACACCCATTCAGAACATCATGTATTTCGGAAAACATTTGATTAAATTAAATGAGTTGTAAAATATTATCTAGAAACGGGTAAATTTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGGGCACGATGTTATTGTCTTTCCGTACTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCAGCACGTTGGTATTA---TAAACCCCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAGGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATTAAAGTTTTCCATCCCTAGCAAAATAAATTGACCCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATATCTAGCCTG--AAAAATA----GGGAGG------CACTGGCCTTC-----------CTGTGCCTCAGAGTAACTTCGGGCCTa
gi|6 : TATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTATTGTCTTCCCGTAGCTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATAGTCGGCACGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-GCAG---TCTTTTGATGGTAAGC-------------TCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATAAAAGTTTTCCATCCAGAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTCAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATACCTAGCTCA--AAAAACA----GGGAGG------CACTAGCCTCC-----------CTGTG-CTCAGAGTAGTTACGGGCCT
gi|7 : TAGAAACGGGTAAAATTAATTTATTTTGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCACACGATGTTATTGTCTTCCCGTAGTTCGTGGTTTATATTGGATAATGTCCAGTGAGGATGCAATACAGTCGGCATGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACAGACTAATTTCTAGCTTCAGCG-TAGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGATCAAAACAG-ATCA-----AAGATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTA------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATAACTAGCCCG--AAAAATAG---GGGAGG------CA----CCTCC-----------CTGTGCCTCAGAGTAGCTATAGGCCT
gi|8 : AATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTTTTGTCTTCCCGTAGGTCGTGGTTTACATGGGATAATGTCCAGTGAGGAGGCAATACTGTCGGCACGTTGGTATAATAATAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTAACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTAGTTGTAAGCTTACAGACAATGATCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATGATAAAATTAAA-TTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ATTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATGCAATATAGTGCCTC-A-A-T-TT---G--TTTC------ATACCTAGCCCG--AAAAACA----GG
gi|9 : TTTCTAGTCCAAAGTCTTATTAGGTATATATTATTTTTTT----TAAGGTAAG----------------------TCACTTATTGCGAATTGATTTTATATGTATATA-----TGCATAT-GTGTAT--ANNNNNNNNNNNNNNNNNNNNNNNNNNNT---TACATT-----------ACAT-------TACATA--AATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGACTTGTTG---GTATATCATCAAAAGGTACTGCATTTTTCCAACGATCC
Alignments
lowQualScore : 22222 222222 22222 111 22222 1 22222 11 5555555555555555555555 2222 111 222 222222 1111 22222222 1 111111 111111111111 11111111111
lowQualScore : 1 77777 1 999999 2 99999 7 444 1 55555 5 1 5 00000 8 11 8888888888888888888888 0 5 1111 6 6 000 000 1 333333 8 0000 99999999 0 1 3 3 4 1 777 2 4 4 777 6 0 0 3 1 0 66 222222 2 333 99999999999 4444 5 1 777 333 444 555555 22 6666 11 444444444444 00000000000
lowQualScore : . ..... . ...... . ..... . ... . ..... . . . ..... . .. ...................... . . .... . . ... ... . ...... . .... ........ . . . . . . ... . . . ... . . . . . . .. ...... . ... ........... .... . . ... ... ... ...... .. .... .. ............ ...........
lowQualScore : 0 55555 0 555555 5 33333 3 000 4 88888 6 4 0 00000 0 00 2222222222222222222222 4 8 2222 7 7 000 000 4 000000 0 6666 00000000 0 4 2 1 4 0 888 7 4 4 888 5 1 1 4 9 1 11 888888 1 555 00000000000 0000 7 9 777 333 777 555555 66 0000 11 777777777777 66666666666
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
Reference ( family-2303 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|1 : CAAGTTGTTCATTTATGACAATA-----CAGATATGCACTTATGACCATCATAAG------TTTCTAGCCCAAAGTCTTAGTGGAAATATATCATTATTT-TAAGTTATGGTAAGAGGTGGTATGTAA---ATATAGTCAATTATTATGAATTAATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTATGTGTGTGTGTATGTATGTTTGTATACATATGTTTGTATGTATGTATATGTGTATATACATATATATG----TATATAATATAATTCATAACTTCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAGCGATCCAGTTCTTATCGAAGTTACTTGTTATA------GACATTTCTTAAGACAGA-AAAAAA-TTCAATTTCTTAACTTCTAGTGTTAGCTTACTTATACTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAATCCTTTGATTGAATTAAATGAGTTGTAAAATATGATCTAAAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTTAGAATTGCCAGC-ATGCACACGATGTTTTTGTCTTCCTATAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGCATACTTTCTAAAGTACTGATTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATA-ACAT---CCATTTGATTGTAAGCTTACAGACAATTGTCTAGTGAAGTCTAGAATATGCTGGCTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCTTAGCAAAACAAATTAAGACATCGTGTGCTGCCTGGCCAAT--ACTT------CATCTTAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGACTC-A-G-T-CT---T--TTTC------ATACCTAGCCCG--AAAAACA----GGTAAG------CACTGGCCTAC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCCAAAGTCTTAGTAGAT
gi|10 : AGATCTGTCACCGATGCGCATGATGTTTTTGTCTTCCTGCAGTTTGTGATTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTTGTATAA---TAAACACGACATGCTTTCAGAACGACGCTTTTCTAAAGTACTGACTATTTTTTAGTTTCAGTGTTGGAGTAGTGGTTAGTTAACAG---ctgtcaccgatgcgcatgatgtttttgtcttcctgcagtttgtgatttacatgggataatgtccagtgaggatgcaatactgtcggcacgtttgtataataaacacgacatgctttcagaacgacgcttttctaaagtactgactattttttagtttcagtgttggagtagtggttagttaacagatcgtctacatattcagacacacaaacaa
gi|11 : agtccaaagtcttagtAGCAAAAAACAT-GAGGCATTATATGATGCCTGACTTGTGTAGTTGTATAGTGTCTGAGTATTAAAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTTAATATAGTGACTC-A-G-C-TGAAATGATTTC------GTACCTAGTCCG--AAAAACA----GGAAGG------AATTAA------------------GAGCCTTAGAGTAG-TACGGGCCTatcgtctacatattcagacacacaaacaa
gi|12 : aatagaagcgttgctaaacaaAATTT-GTTTTGTTTTAAAATGCAA---CA-----------AGG----ATGTTAAATATAGTGCCTCAA-A-T-TG---T--GTTC------GTACCTAGTACG--AAAAACT----GGGAGG------CACGTGCCT
gi|13 : aATAATTT-ATTTAGTTTTGAAATACAA---CA-----------AAA----ACATTAAATGTAGTGCCTC-A-A-CGTT---T--TTTC------GTACCTGGCACT--AAAAACAGGGTGGGAGGGGGGGTCACCGGCCTCCCTGTGCCCTCCCTGTGCCTCAGAGTAGCTACGGGCggaaattgtgcgtttcatttagttccaacacaaatgatgtaaagcattgcgtcacgcggtatttact
gi|14 : tTGTAATTAACATA-T---TCATTAT---TTAATAT-ATATCTATATAATTATTGCATAT-GTGTTT--TTTACATGTATGTGTATGTATTTGTGTGTATATACATTTATATGTATATATGTGTGTGTGT
gi|15 : aaattgttgcaagcgtgcATAATTG-ATTTAGTTTTAAAATGTAA---CACCAAGGATTCAAGG----ATATTAAATATAATGTTTC-ATA-T-TT---T--TCT-------GTACCTAGCCCG--AAAAACA----G---GG------CATCGGCCTCC-----------CTGGACATCAGGGTAACAACGGGCCTttg
gi|16 : ATTATAATTT-ATTTAGTTTCAAAATGCAACACCA-----------AGG----ATATTAAATATAGTGTCTCAA-A-T-CT---T--GTTC------ATACCTAGCCCG--AACAGCA----GGGAGG--------------------------------GTCTCAGAGTAGCTACGGGCCT
gi|17 : ATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTC-A-AAG-TT---T--TTTC------GTACTTAGCACT--AAAAACA----G-----------------TCTCC------------TGTGCCTCAGAGTAGTTACGGGCC
gi|18 : TAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTCAA-A-G-TA---T--TTTC------GTACTTAGCACT--AAAAACA----G------------------TCCC-----------CTGTGCCTCAGAGTAGCTACGGGCC
gi|19 : AATTT-ATTTAGTTTTAAAATACAA---CA-----------TAA----ACATTAAGTATATTGCCTC-A-A-CGTT---T--TTTC------GTACCTAGCACT--AATAACA----AGGAGG------T--------------------------CCTCAGAGTAGCTACGGGC
gi|2 : CAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAGTC-------TTAGCAGATATATATTACTTTTTAT--GTTAAGGTAAGAGGTGGTATGTAA---ATATA--CACTTATTACGAATTGATTTGATATGTATATA-----TGCATAT-GTGAAT--ATTGTGTGTGTGAGTGCGTGCGT----------------------ATGTATATGTGTGNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNA--TGCA-CTTATCTATCATGCCTATA-AGAC---TTGTTGGTATATCATCAAAAGATACTGCATTTTTCTAACGATCCAGTTCTTGTCGACGTAACTTTTAATACCGGTAGACATTTCTTAAGAAAAACAAAAAAAAACAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCTGTTCAGAACATCATGTATTTTGGAAAACCTTTGATTAAATTAAATGAGTTGTAGAATATGATCTAGAAACTGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGT-ATGCGCACGATGTTTTTGTCTTCCCGTAGTTTGTGGTTTATATGGGATAATGTT-------------ATACTGTCCGCACGTTGGTATAT---TAAACCTAACATGCTTTCAGAACGAATCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAG----TC-ACAG---TCTTTTGGTTGTAAGTTAACAGACAAT--------------------------GGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCAATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-AAATAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCC------------------TTC------ATACCTAGCCCG--AAAAACA----GGGAGA------CACTAGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|20 : cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAATTTTGTTTAGTTTTAAAATGCAA---CA-----------AGA----ATGTTAAATATAGTGCCTC-A-A-A-TG---T--TGTC------CTAACAAGTCCG--AAAAACA----G-------------------------------------ACCTCAGAGTAGCTACGGGCCT
gi|21 : tATTT-ATTTAGTTTTAAAATGCAA---CA------------------------------------C-A-----TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAAG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTTCGGGCCT
gi|22 : TTTAGTTTTAAAATGCAA---CA-----------CGGCGTTATAATAAAAACAGGG-----A-A-------------------------------CA--AAAAA---------AGG------C-------TTC-----------CTGGGCCTCAGAATAGCCACGGGCCT
gi|23 : TATATAA---ACATAATTA-TTATTATGA--TCATTT--TATGCACATG-----CATGTATTGTGTATGTATTGTGTGTGTGTGTGTGTGTG
gi|24 : A-----------AGG----ATATTAAATATAGTACCTC-A-A-C-TT---TG-TTTC------GTACCTAGACCG--AACAAGA----GGT-GG------CACCGACCT
gi|25 : taatttattCATTACTGCAATTTTTCTAACCCGCCTATATAAAC---TT------ATATCAACTAAAGACACTGCTTTTTTCGAACGATCCagt
gi|26 : ATTATTT-ATTTAGTTT-AAAATGCAA---CA---------------------TT-------------------T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACTGGC
gi|27 : tTTGCATGTGTGTGTGTGTGTGTATATATATAGAC------ATACATGTGTATGTGT
gi|28 : gtgtttttcacatttCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCttat
gi|3 : TGTGTGTGTACATATAAATACCTTTATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTATTT-AGAAAACCTTTGATCAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGAAGTCAGTAACAGCCTCAAAATTGCCAGC-ATGCGCACGATGTTATTGT-----------TCATGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATTGTCGTCACGTTGGTATAA---TAAACACCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGAATAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATAGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGC---AATA--AT-AAAAT-------------CAAAGT----T------TCGTGTGCTGCCTGACCAAT--ACTT------CAGCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAGTATAGTGCCTC-A-A-T-TT---T--GCTCATACATGTACCTAGCCCG--AAAAACA-----GGAGG------CACTGGCCTCC-----------CTGTGCCTCAGAGTAGCTACTGGCCT
gi|4 : TCTTAACTGCA-CTTATCTAACACGCCTATA-AGGC---TTGTTGGTATATCATAAAAAGATACCGCATTTTTCCAACGATCCAGTTCTTGTCGCAGTAACTTGTAATA------TACATTTCTTAAGAGAGA-AAAAA-------TTTCT--------GGTGTTAGCCTACTTGTGTTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAAACCTTTGATTAAATTATATGAGTTGTAAAATATGATCTAGAAACGGGTAAATTTAATTTA-----AAGTAGTCTGTAACAGCCTCAGAATTGCCAGC-TTGCGCACGATATTTTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATCA---TAAACCCT-CGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAATG-TGGGCTTGCAGTCAATC-CTAGTGTTTTTTTTATTGTAAGCTTACAGACACTAGTCTGCTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATACAATCAAAGTTTTCGATCCCTATCGGAAT------AGG---------------GACCAAT--ACTT------TACCTGAGTTTCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----GTATTAAATACAGTGCCTC-A-A-T-TC---T--TC---------TACCTCGCCCGAAAAAAACA----GGAAGC------CACCGGCCTCC-----------CTGTAAATCAGAGTAGTTACGGGC
gi|5 : ---TTG---GTATCTCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGACGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATATCACCTGGTAGTAACAAACACCCATTCAGAACATCATGTATTTCGGAAAACATTTGATTAAATTAAATGAGTTGTAAAATATTATCTAGAAACGGGTAAATTTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGGGCACGATGTTATTGTCTTTCCGTACTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCAGCACGTTGGTATTA---TAAACCCCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAGGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATTAAAGTTTTCCATCCCTAGCAAAATAAATTGACCCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATATCTAGCCTG--AAAAATA----GGGAGG------CACTGGCCTTC-----------CTGTGCCTCAGAGTAACTTCGGGCCTa
gi|6 : TATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTATTGTCTTCCCGTAGCTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATAGTCGGCACGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-GCAG---TCTTTTGATGGTAAGC-------------TCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATAAAAGTTTTCCATCCAGAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTCAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATACCTAGCTCA--AAAAACA----GGGAGG------CACTAGCCTCC-----------CTGTG-CTCAGAGTAGTTACGGGCCT
gi|7 : TAGAAACGGGTAAAATTAATTTATTTTGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCACACGATGTTATTGTCTTCCCGTAGTTCGTGGTTTATATTGGATAATGTCCAGTGAGGATGCAATACAGTCGGCATGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACAGACTAATTTCTAGCTTCAGCG-TAGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGATCAAAACAG-ATCA-----AAGATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTA------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATAACTAGCCCG--AAAAATAG---GGGAGG------CA----CCTCC-----------CTGTGCCTCAGAGTAGCTATAGGCCT
gi|8 : AATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTTTTGTCTTCCCGTAGGTCGTGGTTTACATGGGATAATGTCCAGTGAGGAGGCAATACTGTCGGCACGTTGGTATAATAATAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTAACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTAGTTGTAAGCTTACAGACAATGATCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATGATAAAATTAAA-TTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ATTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATGCAATATAGTGCCTC-A-A-T-TT---G--TTTC------ATACCTAGCCCG--AAAAACA----GG
gi|9 : TTTCTAGTCCAAAGTCTTATTAGGTATATATTATTTTTT-T----TAAGGTAAG----------------------TCACTTATTGCGAATTGATTTTATATGTATATA-----TGCATAT-GTGTAT--ANNNNNNNNNNNNNNNNNNNNNNNNNNNT---TACATT-----------ACAT-------TACATA--AATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGACTTGTTG---GTATATCATCAAAAGGTACTGCATTTTTCCAACGATCC
Alignments
lowQualScore : 22222 222222 22222 111 22222 1 22222 11 5555555555555555555555 2222 111 222 222222 1111 22222222 1 111111 111111111111 11111111111
lowQualScore : 1 77777 1 999999 2 99999 7 444 1 55555 5 1 5 00000 8 11 8888888888888888888888 0 5 1111 6 6 000 000 1 333333 8 0000 99999999 0 1 3 3 4 1 777 2 4 4 777 6 0 0 3 1 0 66 222222 2 333 99999999999 4444 5 1 777 333 444 555555 22 6666 11 444444444444 00000000000
lowQualScore : . ..... . ...... . ..... . ... . ..... . . . ..... . .. ...................... . . .... . . ... ... . ...... . .... ........ . . . . . . ... . . . ... . . . . . . .. ...... . ... ........... .... . . ... ... ... ...... .. .... .. ............ ...........
lowQualScore : 0 55555 0 555555 5 33333 3 000 4 88888 6 4 0 00000 0 00 2222222222222222222222 4 8 2222 7 7 000 000 4 000000 0 6666 00000000 0 4 2 1 4 0 888 7 4 4 888 5 1 1 4 9 1 11 888888 1 555 00000000000 0000 7 9 777 333 777 555555 66 0000 11 777777777777 66666666666
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
Reference ( family-2303 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|1 : CAAGTTGTTCATTTATGACAATA-----CAGATATGCACTTATGACCATCATAAG------TTTCTAGCCCAAAGTCTTAGTGGAAATATATCATTATTT-TAAGTTATGGTAAGAGGTGGTATGTAA---ATATAGTCAATTATTATGAATTAATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTATGTGTGTGTGTATGTATGTTTGTATACATATGTTTGTATGTATGTATATGTGTATATACATATATATG----TATATAATATAATTCATAACTTCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAGCGATCCAGTTCTTATCGAAGTTACTTGTTATA------GACATTTCTTAAGACAGA-AAAAAA-TTCAATTTCTTAACTTCTAGTGTTAGCTTACTTATACTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAATCCTTTGATTGAATTAAATGAGTTGTAAAATATGATCTAAAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTTAGAATTGCCAGC-ATGCACACGATGTTTTTGTCTTCCTATAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGCATACTTTCTAAAGTACTGATTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATA-ACAT---CCATTTGATTGTAAGCTTACAGACAATTGTCTAGTGAAGTCTAGAATATGCTGGCTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCTTAGCAAAACAAATTAAGACATCGTGTGCTGCCTGGCCAAT--ACTT------CATCTTAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGACTC-A-G-T-CT---T--TTTC------ATACCTAGCCCG--AAAAACA----GGTAAG------CACTGGCCTAC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCCAAAGTCTTAGTAGAT
gi|10 : AGATCTGTCACCGATGCGCATGATGTTTTTGTCTTCCTGCAGTTTGTGATTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTTGTATAA---TAAACACGACATGCTTTCAGAACGACGCTTTTCTAAAGTACTGACTATTTTTTAGTTTCAGTGTTGGAGTAGTGGTTAGTTAACAG---ctgtcaccgatgcgcatgatgtttttgtcttcctgcagtttgtgatttacatgggataatgtccagtgaggatgcaatactgtcggcacgtttgtataataaacacgacatgctttcagaacgacgcttttctaaagtactgactattttttagtttcagtgttggagtagtggttagttaacagatcgtctacatattcagacacacaaacaa
gi|11 : agtccaaagtcttagtAGCAAAAAACAT-GAGGCATTATATGATGCCTGACTTGTGTAGTTGTATAGTGTCTGAGTATTAAAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTTAATATAGTGACTC-A-G-C-TGAAATGATTTC------GTACCTAGTCCG--AAAAACA----GGAAGG------AATTAA------------------GAGCCTTAGAGTAG-TACGGGCCTatcgtctacatattcagacacacaaacaa
gi|12 : aatagaagcgttgctaaacaaAATTT-GTTTTGTTTTAAAATGCAA---CA-----------AGG----ATGTTAAATATAGTGCCTCAA-A-T-TG---T--GTTC------GTACCTAGTACG--AAAAACT----GGGAGG------CACGTGCCT
gi|13 : aATAATTT-ATTTAGTTTTGAAATACAA---CA-----------AAA----ACATTAAATGTAGTGCCTC-A-A-CGTT---T--TTTC------GTACCTGGCACT--AAAAACAGGGTGGGAGGGGGGGTCACCGGCCTCCCTGTGCCCTCCCTGTGCCTCAGAGTAGCTACGGGCggaaattgtgcgtttcatttagttccaacacaaatgatgtaaagcattgcgtcacgcggtatttact
gi|14 : tTGTAATTAACATA-T---TCATTAT---TTAATAT-ATATCTATATAATTATTGCATAT-GTGTTT--TTTACATGTATGTGTATGTATTTGTGTGTATATACATTTATATGTATATATGTGTGTGTGT
gi|15 : aaattgttgcaagcgtgcATAATTG-ATTTAGTTTTAAAATGTAA---CACCAAGGATTCAAGG----ATATTAAATATAATGTTTC-ATA-T-TT---T--TCT-------GTACCTAGCCCG--AAAAACA----G---GG------CATCGGCCTCC-----------CTGGACATCAGGGTAACAACGGGCCTttg
gi|16 : ATTATAATTT-ATTTAGTTTCAAAATGCAACACCA-----------AGG----ATATTAAATATAGTGTCTCAA-A-T-CT---T--GTTC------ATACCTAGCCCG--AACAGCA----GGGAGG--------------------------------GTCTCAGAGTAGCTACGGGCCT
gi|17 : ATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTC-A-AAG-TT---T--TTTC------GTACTTAGCACT--AAAAACA----G-----------------TCTCC------------TGTGCCTCAGAGTAGTTACGGGCC
gi|18 : TAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTCAA-A-G-TA---T--TTTC------GTACTTAGCACT--AAAAACA----G------------------TCCC-----------CTGTGCCTCAGAGTAGCTACGGGCC
gi|19 : AATTT-ATTTAGTTTTAAAATACAA---CA-----------TAA----ACATTAAGTATATTGCCTC-A-A-CGTT---T--TTTC------GTACCTAGCACT--AATAACA----AGGAGG------T--------------------------CCTCAGAGTAGCTACGGGC
gi|2 : CAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAGTC-------TTAGCAGATATATATTACTTTTTAT--GTTAAGGTAAGAGGTGGTATGTAA---ATATA--CACTTATTACGAATTGATTTGATATGTATATA-----TGCATAT-GTGAAT--ATTGTGTGTGTGAGTGCGTGCGT----------------------ATGTATATGTGTGNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNA--TGCA-CTTATCTATCATGCCTATA-AGAC---TTGTTGGTATATCATCAAAAGATACTGCATTTTTCTAACGATCCAGTTCTTGTCGACGTAACTTTTAATACCGGTAGACATTTCTTAAGAAAAACAAAAAAAAACAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCTGTTCAGAACATCATGTATTTTGGAAAACCTTTGATTAAATTAAATGAGTTGTAGAATATGATCTAGAAACTGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGT-ATGCGCACGATGTTTTTGTCTTCCCGTAGTTTGTGGTTTATATGGGATAATGTT-------------ATACTGTCCGCACGTTGGTATAT---TAAACCTAACATGCTTTCAGAACGAATCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAG----TC-ACAG---TCTTTTGGTTGTAAGTTAACAGACAAT--------------------------GGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCAATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-AAATAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCC------------------TTC------ATACCTAGCCCG--AAAAACA----GGGAGA------CACTAGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|20 : cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAATTTTGTTTAGTTTTAAAATGCAA---CA-----------AGA----ATGTTAAATATAGTGCCTC-A-A-A-TG---T--TGTC------CTAACAAGTCCG--AAAAACA----G-------------------------------------ACCTCAGAGTAGCTACGGGCCT
gi|21 : tATTT-ATTTAGTTTTAAAATGCAA---CA------------------------------------C-A-----TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAAG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTTCGGGCCT
gi|22 : TTTAGTTTTAAAATGCAA---CA-----------CGGCGTTATAATAAAAACAGGG-----A-A-------------------------------CA--AAAAA---------AGG------C-------TTC-----------CTGGGCCTCAGAATAGCCACGGGCCT
gi|23 : TATATAA---ACATAATTA-TTATTATGA--TCATTT--TATGCACATG-----CATGTATTGTGTATGTATTGTGTGTGTGTGTGTGTGTG
gi|24 : A-----------AGG----ATATTAAATATAGTACCTC-A-A-C-TT---TG-TTTC------GTACCTAGACCG--AACAAGA----GGT-GG------CACCGACCT
gi|25 : taatttattCATTACTGCAATTTTTCTAACCCGCCTATATAAAC---TT------ATATCAACTAAAGACACTGCTTTTTTCGAACGATCCagt
gi|26 : ATTATTT-ATTTAGTTT-AAAATGCAA---CA---------------------TT-------------------T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACTGGC
gi|27 : tTTGCATGTGTGTGTGTGTGTGTATATATATAGAC------ATACATGTGTATGTGT
gi|28 : gtgtttttcacatttCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCttat
gi|3 : TGTGTGTGTACATATAAATACCTTTATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTATTT-AGAAAACCTTTGATCAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGAAGTCAGTAACAGCCTCAAAATTGCCAGC-ATGCGCACGATGTTATTGT-----------TCATGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATTGTCGTCACGTTGGTATAA---TAAACACCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGAATAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATAGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGC---AATA--AT-AAAAT-------------CAAAGT----T------TCGTGTGCTGCCTGACCAAT--ACTT------CAGCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAGTATAGTGCCTC-A-A-T-TT---T--GCTCATACATGTACCTAGCCCG--AAAAACA-----GGAGG------CACTGGCCTCC-----------CTGTGCCTCAGAGTAGCTACTGGCCT
gi|4 : TCTTAACTGCA-CTTATCTAACACGCCTATA-AGGC---TTGTTGGTATATCATAAAAAGATACCGCATTTTTCCAACGATCCAGTTCTTGTCGCAGTAACTTGTAATA------TACATTTCTTAAGAGAGA-AAAAA-------TTTCT--------GGTGTTAGCCTACTTGTGTTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAAACCTTTGATTAAATTATATGAGTTGTAAAATATGATCTAGAAACGGGTAAATTTAATTTA-----AAGTAGTCTGTAACAGCCTCAGAATTGCCAGC-TTGCGCACGATATTTTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATCA---TAAACCCT-CGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAATG-TGGGCTTGCAGTCAATC-CTAGTGTTTTTTTTATTGTAAGCTTACAGACACTAGTCTGCTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATACAATCAAAGTTTTCGATCCCTATCGGAAT------AGG---------------GACCAAT--ACTT------TACCTGAGTTTCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----GTATTAAATACAGTGCCTC-A-A-T-TC---T--TC---------TACCTCGCCCGAAAAAAACA----GGAAGC------CACCGGCCTCC-----------CTGTAAATCAGAGTAGTTACGGGC
gi|5 : ---TTG---GTATCTCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGACGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATATCACCTGGTAGTAACAAACACCCATTCAGAACATCATGTATTTCGGAAAACATTTGATTAAATTAAATGAGTTGTAAAATATTATCTAGAAACGGGTAAATTTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGGGCACGATGTTATTGTCTTTCCGTACTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCAGCACGTTGGTATTA---TAAACCCCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAGGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATTAAAGTTTTCCATCCCTAGCAAAATAAATTGACCCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATATCTAGCCTG--AAAAATA----GGGAGG------CACTGGCCTTC-----------CTGTGCCTCAGAGTAACTTCGGGCCTa
gi|6 : TATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTATTGTCTTCCCGTAGCTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATAGTCGGCACGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-GCAG---TCTTTTGATGGTAAGC-------------TCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATAAAAGTTTTCCATCCAGAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTCAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATACCTAGCTCA--AAAAACA----GGGAGG------CACTAGCCTCC-----------CTGTG-CTCAGAGTAGTTACGGGCCT
gi|7 : TAGAAACGGGTAAAATTAATTTATTTTGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCACACGATGTTATTGTCTTCCCGTAGTTCGTGGTTTATATTGGATAATGTCCAGTGAGGATGCAATACAGTCGGCATGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACAGACTAATTTCTAGCTTCAGCG-TAGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGATCAAAACAG-ATCA-----AAGATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTA------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATAACTAGCCCG--AAAAATAG---GGGAGG------CA----CCTCC-----------CTGTGCCTCAGAGTAGCTATAGGCCT
gi|8 : AATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTTTTGTCTTCCCGTAGGTCGTGGTTTACATGGGATAATGTCCAGTGAGGAGGCAATACTGTCGGCACGTTGGTATAATAATAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTAACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTAGTTGTAAGCTTACAGACAATGATCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATGATAAAATTAAA-TTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ATTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATGCAATATAGTGCCTC-A-A-T-TT---G--TTTC------ATACCTAGCCCG--AAAAACA----GG
gi|9 : TTTCTAGTCCAAAGTCTTATTAGGTATATATTATTTTTT-T----TAAGGTAAG----------------------TCACTTATTGCGAATTGATTTTATATGTATATA-----TGCATAT-GTGTAT--ANNNNNNNNNNNNNNNNNNNNNNNNNNNT---TACATT-----------ACAT-------TACATA--AATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGACTTGTTG---GTATATCATCAAAAGGTACTGCATTTTTCCAACGATCC
blockSeqs : G TTTTA G ATCAAG C ATG A TTA C ATTA A A G ATTAT T GT GTGTGTATATACATTTATATGT N CCTT A T TTG TTG A CCGGTA C AAAA . C T T T G T TAA A T A TGT A C A GT GTATAG T CAC CCAAGGATTCA CGTT A T CG AAA GAT ATACAT AA GGGT GA GGGGGTCACCGG CTGTGCCCTCC
blockSeqs : C T . . T TCAC A G T . . . ATATATATAGACATAC T . . . . TTG T . . AATC . C T C T . T . A . . . A C A . . . . . . A . AG . GT . . G GG AATTAA .
blockSeqs : . . C CAC . C . . . . NNNNNTTACATT . . . . . . A . . AATC . . A C T . A . A . . . G T A . . . . . . A . CG . G . . . GG CACGTG .
blockSeqs : . . T . G . . . . . . . . . T . . . . . T . T . T . G . . . G A A . . . . . . . . C . T . . . GG CATCGG .
blockSeqs : . . . . T . A . A . . . G C A . . . . . . . . T . T . . . GG CACTAG .
blockSeqs : . . C . A . C . . . . T A . . . . . . . . T . G . . . GG CACCGG .
blockSeqs : . . A . C . . . . . . . . . . . . . . T . T . . . GG CACCGA .
blockSeqs : . T . G . . . . . . . . . . . . G . T . . . GT CACTGG .
blockSeqs : . . . . . . A . T . . . GG CACTGG .
blockSeqs : . . . . . . C . T . . . GG CACCGG .
blockSeqs : . . . . . . T . T . . . GA CACTGG .
blockSeqs : . . . . . . T . T . . . GG CACTAG .
blockSeqs : . . . . . . T . G . . . GG CA .
blockSeqs : . . . . . . T . T . . . GG T .
blockSeqs : . . . . . . T . G . . . . C .
blockSeqs : . . . . . . T . G . . . . . .
blockSeqs : . . . . . . T . G . . . . . .
blockSeqs : . . . . . . . . T . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons : TCA** AATC ********
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-TCACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATATCA--TTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
Alignments
lowQualScore : 22222 222222 22222 111 333333 1 22222 11 5555555555555555555555 2222 111 222 222222 1111 22222222 1 111111 111111111111 11111111111
lowQualScore : 1 77777 1 999999 2 99999 7 444 1 333333 55 66 1 5 00000 8 11 8888888888888888888888 0 5 1111 6 6 000 000 1 333333 8 0000 99999999 0 1 3 3 4 1 777 2 4 4 777 6 0 0 3 1 0 66 222222 2 333 99999999999 4444 5 1 777 333 444 555555 22 6666 11 444444444444 00000000000
lowQualScore : . ..... . ...... . ..... . ... . ...... .. .. . . ..... . .. ...................... . . .... . . ... ... . ...... . .... ........ . . . . . . ... . . . ... . . . . . . .. ...... . ... ........... .... . . ... ... ... ...... .. .... .. ............ ...........
lowQualScore : 0 55555 0 555555 5 33333 3 000 4 000000 22 22 4 0 00000 0 00 2222222222222222222222 4 8 2222 7 7 000 000 4 000000 0 6666 00000000 0 4 2 1 4 0 888 7 4 4 888 5 1 1 4 9 1 11 888888 1 555 00000000000 0000 7 9 777 333 777 555555 66 0000 11 777777777777 66666666666
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-T-CACTTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
Reference ( family-2303 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGTTGTTCANTTATGACAATATTTTACAGANATGCACTTATGACCATCATAAGATCAAGTTTCTAGTCCAAAGTCTTAGTAGATATATATTATTTTTT-T--GTTAAGGTAAGAGGTGGTATGTAA---ACATA-T-CA-TTATTACGAATTGATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTGCGTGTGTGTGTGTGTGTGTNTGTATATATACGTTT-TATGTATGTATATGTGTGTGTACATATAAATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAGTTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCACGTATTTCGGAAAACCTTTGATTAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTNTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|1 : CAAGTTGTTCATTTATGACAATA-----CAGATATGCACTTATGACCATCATAAG------TTTCTAGCCCAAAGTCTTAGTGGAAATATATCATTATTT-TAAGTTATGGTAAGAGGTGGTATGTAA---ATATAGT-CAATTATTATGAATTAATTTGATATGTATATA-----TGCGTAT-GTGTAT--ATTATGTGTGTGTGTATGTATGTTTGTATACATATGTTTGTATGTATGTATATGTGTATATACATATATATG----TATATAATATAATTCATAACTTCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAGCGATCCAGTTCTTATCGAAGTTACTTGTTATA------GACATTTCTTAAGACAGA-AAAAAA-TTCAATTTCTTAACTTCTAGTGTTAGCTTACTTATACTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAATCCTTTGATTGAATTAAATGAGTTGTAAAATATGATCTAAAAACGGGTAAAATTAATTTATTCGGAAGTAGTCAGTAACAGCCTTAGAATTGCCAGC-ATGCACACGATGTTTTTGTCTTCCTATAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATAA---TAAACCCCACGTGCTTTCAGAACGCATACTTTCTAAAGTACTGATTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATA-ACAT---CCATTTGATTGTAAGCTTACAGACAATTGTCTAGTGAAGTCTAGAATATGCTGGCTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCCATCCTTAGCAAAACAAATTAAGACATCGTGTGCTGCCTGGCCAAT--ACTT------CATCTTAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGACTC-A-G-T-CT---T--TTTC------ATACCTAGCCCG--AAAAACA----GGTAAG------CACTGGCCTAC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|10 : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGTCCAAAGTCTTAGTAGAT
gi|10 : AGATCTGTCACCGATGCGCATGATGTTTTTGTCTTCCTGCAGTTTGTGATTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTTGTATAA---TAAACACGACATGCTTTCAGAACGACGCTTTTCTAAAGTACTGACTATTTTTTAGTTTCAGTGTTGGAGTAGTGGTTAGTTAACAG---ctgtcaccgatgcgcatgatgtttttgtcttcctgcagtttgtgatttacatgggataatgtccagtgaggatgcaatactgtcggcacgtttgtataataaacacgacatgctttcagaacgacgcttttctaaagtactgactattttttagtttcagtgttggagtagtggttagttaacagatcgtctacatattcagacacacaaacaa
gi|11 : agtccaaagtcttagtAGCAAAAAACAT-GAGGCATTATATGATGCCTGACTTGTGTAGTTGTATAGTGTCTGAGTATTAAAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AGG----ATATTTAATATAGTGACTC-A-G-C-TGAAATGATTTC------GTACCTAGTCCG--AAAAACA----GGAAGG------AATTAA------------------GAGCCTTAGAGTAG-TACGGGCCTatcgtctacatattcagacacacaaacaa
gi|12 : aatagaagcgttgctaaacaaAATTT-GTTTTGTTTTAAAATGCAA---CA-----------AGG----ATGTTAAATATAGTGCCTCAA-A-T-TG---T--GTTC------GTACCTAGTACG--AAAAACT----GGGAGG------CACGTGCCT
gi|13 : aATAATTT-ATTTAGTTTTGAAATACAA---CA-----------AAA----ACATTAAATGTAGTGCCTC-A-A-CGTT---T--TTTC------GTACCTGGCACT--AAAAACAGGGTGGGAGGGGGGGTCACCGGCCTCCCTGTGCCCTCCCTGTGCCTCAGAGTAGCTACGGGCggaaattgtgcgtttcatttagttccaacacaaatgatgtaaagcattgcgtcacgcggtatttact
gi|14 : tTGTAATTAACATA-TTCA-TTATT------TAATAT-ATATCTATATAATTATTGCATAT-GTGTTT--TTTACATGTATGTGTATGTATTTGTGTGTATATACATTTATATGTATATATGTGTGTGTGT
gi|15 : aaattgttgcaagcgtgcATAATTG-ATTTAGTTTTAAAATGTAA---CACCAAGGATTCAAGG----ATATTAAATATAATGTTTC-ATA-T-TT---T--TCT-------GTACCTAGCCCG--AAAAACA----G---GG------CATCGGCCTCC-----------CTGGACATCAGGGTAACAACGGGCCTttg
gi|16 : ATTATAATTT-ATTTAGTTTCAAAATGCAACACCA-----------AGG----ATATTAAATATAGTGTCTCAA-A-T-CT---T--GTTC------ATACCTAGCCCG--AACAGCA----GGGAGG--------------------------------GTCTCAGAGTAGCTACGGGCCT
gi|17 : ATAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTC-A-AAG-TT---T--TTTC------GTACTTAGCACT--AAAAACA----G-----------------TCTCC------------TGTGCCTCAGAGTAGTTACGGGCC
gi|18 : TAATTT-ATTTAGTTTTAAAATGCAA---CA-----------AAA----ACATTAAATATAGTGCCTCAA-A-G-TA---T--TTTC------GTACTTAGCACT--AAAAACA----G------------------TCCC-----------CTGTGCCTCAGAGTAGCTACGGGCC
gi|19 : AATTT-ATTTAGTTTTAAAATACAA---CA-----------TAA----ACATTAAGTATATTGCCTC-A-A-CGTT---T--TTTC------GTACCTAGCACT--AATAACA----AGGAGG------T--------------------------CCTCAGAGTAGCTACGGGC
gi|2 : CAAATTGTTCAGTTATGACAATATTTTACAGAGATGCACTTATAACTATCATAAGATCAAGTTTCTAGTC-------TTAGCAGATATATATTACTTTTTAT--GTTAAGGTAAGAGGTGGTATGTAA---ATATA---CACTTATTACGAATTGATTTGATATGTATATA-----TGCATAT-GTGAAT--ATTGTGTGTGTGAGTGCGTGCGT----------------------ATGTATATGTGTGNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNA--TGCA-CTTATCTATCATGCCTATA-AGAC---TTGTTGGTATATCATCAAAAGATACTGCATTTTTCTAACGATCCAGTTCTTGTCGACGTAACTTTTAATACCGGTAGACATTTCTTAAGAAAAACAAAAAAAAACAATTTCT--------GGTGTTAGCTTACTTATGTTACCTGGTAGTAACAAACACCTGTTCAGAACATCATGTATTTTGGAAAACCTTTGATTAAATTAAATGAGTTGTAGAATATGATCTAGAAACTGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGT-ATGCGCACGATGTTTTTGTCTTCCCGTAGTTTGTGGTTTATATGGGATAATGTT-------------ATACTGTCCGCACGTTGGTATAT---TAAACCTAACATGCTTTCAGAACGAATCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAG----TC-ACAG---TCTTTTGGTTGTAAGTTAACAGACAAT--------------------------GGTCAAAACAGCAGCAATAATAAAATCAAAGTTTTCAATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-AAATAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCC------------------TTC------ATACCTAGCCCG--AAAAACA----GGGAGA------CACTAGCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCCT
gi|20 : cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATAATTTTGTTTAGTTTTAAAATGCAA---CA-----------AGA----ATGTTAAATATAGTGCCTC-A-A-A-TG---T--TGTC------CTAACAAGTCCG--AAAAACA----G-------------------------------------ACCTCAGAGTAGCTACGGGCCT
gi|21 : tATTT-ATTTAGTTTTAAAATGCAA---CA------------------------------------C-A-----TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAAG------CACCGGCCTCC-----------CTGTGCCTCAGAGTAGCTTCGGGCCT
gi|22 : TTTAGTTTTAAAATGCAA---CA-----------CGGCGTTATAATAAAAACAGGG-----A-A-------------------------------CA--AAAAA---------AGG------C-------TTC-----------CTGGGCCTCAGAATAGCCACGGGCCT
gi|23 : TATATAA---ACATAAT-TA-TTATTATGA--TCATTT--TATGCACATG-----CATGTATTGTGTATGTATTGTGTGTGTGTGTGTGTGTG
gi|24 : A-----------AGG----ATATTAAATATAGTACCTC-A-A-C-TT---TG-TTTC------GTACCTAGACCG--AACAAGA----GGT-GG------CACCGACCT
gi|25 : taatttattCATTACTGCAATTTTTCTAACCCGCCTATATAAAC---TT------ATATCAACTAAAGACACTGCTTTTTTCGAACGATCCagt
gi|26 : ATTATTT-ATTTAGTTT-AAAATGCAA---CA---------------------TT-------------------T-TT---T--TTTC------GTACCTAGCCCG--AAAAACA----GGGAGG------CACTGGC
gi|27 : tTTGCATGTGTGTGTGTGTGTGTATATATATAGAC------ATACATGTGTATGTGT
gi|28 : gtgtttttcacatttCCTCC-----------CTGTGCCTCAGAGTAGCTACGGGCttat
gi|3 : TGTGTGTGTACATATAAATACCTTTATATAACATGATTCATAACTGCA-CTTATCTAACACGCCTATA-AGAC---TTG---GTATATCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGTCGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATGTTACCTGGTAGTAACAAACACCCGTTCAGAACATCATGTATTT-AGAAAACCTTTGATCAAATTAAATGAGTTGTAAAATATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGAAGTCAGTAACAGCCTCAAAATTGCCAGC-ATGCGCACGATGTTATTGT-----------TCATGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATTGTCGTCACGTTGGTATAA---TAAACACCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGAATAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATAGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGC---AATA--AT-AAAAT-------------CAAAGT----T------TCGTGTGCTGCCTGACCAAT--ACTT------CAGCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAGTATAGTGCCTC-A-A-T-TT---T--GCTCATACATGTACCTAGCCCG--AAAAACA-----GGAGG------CACTGGCCTCC-----------CTGTGCCTCAGAGTAGCTACTGGCCT
gi|4 : TCTTAACTGCA-CTTATCTAACACGCCTATA-AGGC---TTGTTGGTATATCATAAAAAGATACCGCATTTTTCCAACGATCCAGTTCTTGTCGCAGTAACTTGTAATA------TACATTTCTTAAGAGAGA-AAAAA-------TTTCT--------GGTGTTAGCCTACTTGTGTTATCTGGTAGTAACAAACACCCGTTCAGAACATCACGTAATTCGGAAAACCTTTGATTAAATTATATGAGTTGTAAAATATGATCTAGAAACGGGTAAATTTAATTTA-----AAGTAGTCTGTAACAGCCTCAGAATTGCCAGC-TTGCGCACGATATTTTTGTCTTCCCGTAGTTCGTGGTTTACATGGGATAATGTCCAGTGAGGATGCAATACTGTCGGCACGTTGGTATCA---TAAACCCT-CGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAATG-TGGGCTTGCAGTCAATC-CTAGTGTTTTTTTTATTGTAAGCTTACAGACACTAGTCTGCTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATACAATCAAAGTTTTCGATCCCTATCGGAAT------AGG---------------GACCAAT--ACTT------TACCTGAGTTTCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----GTATTAAATACAGTGCCTC-A-A-T-TC---T--TC---------TACCTCGCCCGAAAAAAACA----GGAAGC------CACCGGCCTCC-----------CTGTAAATCAGAGTAGTTACGGGC
gi|5 : ---TTG---GTATCTCATCAAAAGATACTGCATTTTTCCAACGATCCAGTTCTTGACGAAATTACTTGTAATA------GACATTTCTTAAGAGAGA-AAAAAAATCCAATTTCT--------GGTGTTAG-TTACTTATATCACCTGGTAGTAACAAACACCCATTCAGAACATCATGTATTTCGGAAAACATTTGATTAAATTAAATGAGTTGTAAAATATTATCTAGAAACGGGTAAATTTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGGGCACGATGTTATTGTCTTTCCGTACTTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATACTGTCAGCACGTTGGTATTA---TAAACCCCACATGCTTTCAGAACAAAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAGGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATTAAAGTTTTCCATCCCTAGCAAAATAAATTGACCCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATATCTAGCCTG--AAAAATA----GGGAGG------CACTGGCCTTC-----------CTGTGCCTCAGAGTAACTTCGGGCCTa
gi|6 : TATGATCTAGAAACGGGTAAAATTAATTTATTTGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTATTGTCTTCCCGTAGCTCGTGGTTTATATGGGATAATGTCCAGTGAGGATGCAATATAGTCGGCACGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACTGACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-GCAG---TCTTTTGATGGTAAGC-------------TCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATAATAAAATAAAAGTTTTCCATCCAGAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTCAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATACCTAGCTCA--AAAAACA----GGGAGG------CACTAGCCTCC-----------CTGTG-CTCAGAGTAGTTACGGGCCT
gi|7 : TAGAAACGGGTAAAATTAATTTATTTTGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCACACGATGTTATTGTCTTCCCGTAGTTCGTGGTTTATATTGGATAATGTCCAGTGAGGATGCAATACAGTCGGCATGTTGGTATAA---TAAACCCCACCTGCTTTCAGAACGCAGCTTTTCTAAAGTACAGACTAATTTCTAGCTTCAGCG-TAGGCTTGTAGTCAATC-ACAG---TCTTTTGATTGTAAGCTTACAGACAATGGTCTAGTGTAGTCTAGAATATGCTGGATCAAAACAG-ATCA-----AAGATCAAAGTTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ACTA------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATTAAATATAGTGCCTC-A-A-T-TT---T--GCTC------ATAACTAGCCCG--AAAAATAG---GGGAGG------CA----CCTCC-----------CTGTGCCTCAGAGTAGCTATAGGCCT
gi|8 : AATTAATTTATTCGGAAGTAGTCAGTAACAGCCTCAGAATTGCCAGC-ATGCGCACGATGTTTTTGTCTTCCCGTAGGTCGTGGTTTACATGGGATAATGTCCAGTGAGGAGGCAATACTGTCGGCACGTTGGTATAATAATAAACCCCACGTGCTTTCAGAACGAAGCTTTTCTAAAGTACTAACTAATTTCTAGCTTCAGTG-TGGGCTTGTAGTCAATC-ACAG---TCTTTTAGTTGTAAGCTTACAGACAATGATCTAGTGTAGTCTAGAATATGCTGGGTCAAAACAGCAGCAATGATAAAATTAAA-TTTTCCATCCCTAGCAAAATAAATTGAGGCATCGTGTGCTGCCTGACCAAT--ATTT------CATCTGAGTATCATAATTT-ATTTAGTTTTAAAATGTAA---CA-----------AGG----ATATGCAATATAGTGCCTC-A-A-T-TT---G--TTTC------ATACCTAGCCCG--AAAAACA----GG
gi|9 : TTTCTAGTCCAAAGTCTTATTAGGTATATATTATTTTTT-T----TAAGGTAAG----------------------T-CACTTATTGCGAATTGATTTTATATGTATATA-----TGCATAT-GTGTAT--ANNNNNNNNNNNNNNNNNNNNNNNNNNNT---TACATT-----------ACAT-------TACATA--AATA----TATATAATATAATTCATAACTGCA-CTTATCTAACACGCCTATA-AGACTTGTTG---GTATATCATCAAAAGGTACTGCATTTTTCCAACGATCC