lowQualScore : 11111 1111111 77777 1 1 111111111 33 22 2222222222 1 1111111 33 11 1 3333333333333 1 111111111 1111111111111111 111111 111111111
lowQualScore : 4 4 11111 2 2 5 5 5 777 555 0000000 55 666 7777 77777 3 3 444 33 6 1 1 6 7 1 111111111 6666 44 555 00 5555 555 3333333333 33 2 5 0000000 0 0 44 88 4 6 2 7777777777777 2 6 99 777777 2 1 444 1 5555 2 999999999 2 2 9999999999999999 1 333333 1 555555555 555 8888 2 33 9 33 2 99 3 2
lowQualScore : . . ..... . . . . . ... ... ....... .. ... .... ..... . . ... .. . . . . . . ......... .... .. ... .. .... ... .......... .. . . ....... . . .. .. . . . ............. . . .. ...... . . ... . .... . ......... . . ................ . ...... . ......... ... .... . .. . .. . .. . .
lowQualScore : 9 4 11111 0 4 0 4 3 888 888 8888888 00 444 1111 66666 1 1 444 44 6 4 7 9 8 9 444444444 1111 22 000 88 7777 000 4444444444 99 2 0 7777777 6 6 00 55 9 6 7 5555555555555 7 0 77 222222 5 1 777 3 5555 4 555555555 2 2 4444444444444444 8 666666 7 999999999 555 9999 2 22 4 22 4 22 4 9
consensus : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTT-----TACTCCCTNA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACT-----TCTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCGGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTCTC-AGTGACAATGATCTACGGGAAATA--ACTCT------TA-TTGTA---TATA--GTTAGTNTGGTTCCCCGA--TC--TA-CCG-ATAAACAGT----CGATT-TTTATCGGTANA-GGTCGGGGAACCA----GAC--T--GTTTT---ACATAGCAGTTAC--TTCCC--TTA-GAT--TTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
Reference ( gi|1 ) : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTT-----TACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACTAA-AATCTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGAAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTACCGACGT------CAGAAGCAGACAATGTCATTGATATTAAATAAATACGATAAAGTAATCGGCTTAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTCTC-AGTGACAATGACCTACGGGAAATA--ACTCC------TA-TAGTA---TATA--GTTAGTGTGGTTCCCCAA--TC--TA-CCA-ATAAACAGT----CGATT-CTTATCGGTAAA-GGTCAGGGAACCA----GAC--T--GTTTT---CCATAGCAGTTGC--TTCAC--TTA-GAT--TTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|26 : TGCTCCAGAT-AGCTTTTAGCCAAATGCTTATTTT-----TTCTCCCTAA-ATTTAATTGCAATGCTTAAA
gi|30 : TGCTCCAGGTAATTTTTTAGCCAAAAAATTA-TTT-----TACg
gi|24 : CTCCAGATAAGCTTTTGGCCCAATGCTTA-TTT-----TACCCCCTAA-AATAAAATTCAATGCTTAAAATGGAAA---CTGAA---AGAG-------TATTTTCcacgaaaat
gi|20 : CTCTAGATAAGGTTTTGACTGAATGAATA-TTT-----TAC-CCCTGATATTAAAAT-TAGTGCTGAAAATTAAAACTTCTGAAGTCAGAA-------TATGT-------ATTGGTTATGTTTCAAAACAAATAATAAGACAAAACCACTGATTTAAAATGTCTGTACTTCAACACtgatcagttattgg
gi|18 : TTCAGATCAGCTTTTGGCCAAATGCTTA-TTT-----TACTCCCTTA-ATTAAAATACAATGATTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACT-----TGTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGT
gi|18 : aaacgaaaattgaaagagtattAAATAAGCATTTGGCCAAAAGCTGA-TCTGAAAATACTCTTTCA-ATT
gi|21 : aaacgaaGATCAGTTATTGGCCATATGCTTA-TTG-----TACGCCCTAA-ATT-AAATGCAATGCTTAAAATGGA------------------------CATTTTCAA--AAC---TTACCTCT----ATTtactcccttaattaaaatacaatgattaaaatggaaattgaaagagtattttcaaaatttacctttacttgtgaccagacactgttaatgtttgctttaatacagatttgaggt
gi|2 : aatggaaactgaaagagtattttctATGCTTA-TTT-----GACTTTCTAA-ATTAAAATGCAATGCTTAAAATCGAAA---TTGAA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACT-----TCTGACCAGA-CACTG-TT---AATGTTTG--TTTTAATACAGATTTGAGGTTGTCTTCAATTTTATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCATCCCGCGTGTTTTTTGTTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TG---TG------T---AT--GTTTTTGTCTTCTGACGC------CAGAAGCAGAAGATGCCATT--TAT--AATAAATACGATAAAGTAATCGGCT-AAGTAGTGCAGGTTCGTTTATAGCAAGCCTCTTTAAAAAAATTGGAAATACTCAA-CATG-------------CTC-AGTGACAATGATCTACGGGAAATA--ACTCT------TA-TTGTA---TATANNNNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNN--T--ATTTT---ACATAGCAGTTAC--TTCCC--TTA-GAT--TTGTTTATTTCGCGGTGTCTACTTCCATTGTGAAAAACCCGGTTTTTGGAAATACGATACGTACAAGATCGCCAATGAAATGCTtgcaagtagactgtcataatg
gi|25 : -TTT-----TACTCCCTTA-ATTTAAGTACAATACTTAAAATGGAAA---TTAAA---AAAAACACAATTATTTTCCATGAAT---CTA
gi|14 : AAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACT-----TCTGACCAGA-TACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGCCTTCAATTTCTTTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATCGTATTTT-CTTA---AAGAACTGGAATAAG---TCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTTCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATTGGCTAAAGTAATGCAGGTTCATTTATAGCAGGCCTCTTTTCAACTCTTGGAA
gi|4 : AATGGAAA---TTGAA---AGAG-------TATTTTCAA--AAT---ATACCTTT----ACT-----TCTGACCAGA-CATTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTAACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGTTTTTTGTTAATTTTT--GTGACTTCATAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCTTTTGT---TG------T---TG--TTTTTTGTCTTCCGACGC------CAGAAGCAGACGATGCCATT--TAT--AATAAATATGATAAAGTAATCGGCTAAAGTCATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAATTACTCA---------CCATG-----CTC-AGTGACAATGATCTACGGGAAATA--NNNNN------NN-NNNNN---NNNN--NNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NTA--T--GCTTT---ACATAGCAGTTAC--TTCCC--TTA-GAT--TTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACTCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCT
gi|17 : AATGGAAA---TTGAA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACT-----TCTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGCCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCATGTGTTTTTTGTTCA-TTTTTTGTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAA
gi|5 : GAA---AGAG-------TATTTTCAA--AAT---TTATCTTT----ACT-----TCTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGTCTTTAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAATTGGAATAAGTTA--AAATAATGATTGTTTTTTT---TT---TGTTTGTTT---TT--TTTTTTGTCTTCTGACGC------CAGAAGCAGACGATGCCATT--TAT--AATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-----A--------TC-AGTGACAATGATCTACGGGAAATANNNNNNN------NN-NNNNN---NNNN--NNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNN--N--NNNNN---NCATAGCAGTTAC--TTCCC--TTA-GAT--TTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCTGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAAT
gi|3 : AA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACT-----TCTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTG------CCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCGTGTGTTTTTTGTTCATTTTTT-GTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGATTAAGTTAGCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCAACGC------CAGAAGCAGACGATGCCATT--TAT--AATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTCTC-AGTGACAATGATCTATGGGAAATA--ACTAT------TATTGNNN---NNNN--NNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNN--N--NNNNN---NNNNNNNNGTAACAATTCACTGTTG-CGT--TAGTTTATTTCACGGTGTCTACTTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCGCCAATGAAATGCT
gi|19 : AA---AGAG-------TATTTTCAA--AAT---TTACCTTT----ACT-----TCTGACCTGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCC-TGT
gi|10 : CTTT----ACT-----TTTGACCAGA-CACCG-TT---AATGTTTG--CTTTAATATAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCTCGTGTATTTTTTGTTTA-TTTTTTGTGACTTTGTAATACATGCATCAACA---------A----ATCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAACGATTGGGCTTCT---TT---TG------T---GT--TT-----TCTTCCGACGC------CAGAAGCAAACGATGCCATT--TA-TAAA-AAATACAATAAAGTAATCGGC-TAAGTAATGCAGGTTCGTTTATAGCTGGCCTCTTTAAAACACTTTGAAATACTCAA-CATG-----A--------TC-AGTGACAATGATCTAAGGGAAATANNNNNNN------NN-NNNNN---NNNN--NNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNN--N--NNNNN---NCATAGCAATTAC--TTCCC--TTA-GAT--TTGTTTATTTCACGGTATCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATATGATACGCACAGGATCCCCAATGAAATGCT
gi|6 : tTTT----ACT-----TCTGACCAGA-CAATG-TT---AATGTTTG--CTTTAATACAGATCTGAGGTTGCTTTCAATTTCATT-ATTATCAACCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGCTTTTTGTTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTCGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------TAGAAGCAGACAATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATCTC-AGTGACAATGATCTACGGGAAATA--ACTCT------TA-CTGTA---TATA--NNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNNTAT--GTTTT---ACATAGCAGTTAC--TTCCC--TTA-GAT--TTGTTTATTTCACGGTATCTACTTCCGTTGTAAAAACCCCTGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|12 : TCTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGT--TTTTAATTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TT---TGGGC---T---TT--TTTT--GTCTACCGACGC------CAGAAGCAGACGATGCCATT--TAT--AATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------CTC-AGTGACAATGATCTACGGGAAATA--ACTCT------TA-TTGTA---TAAA--GTTAGTGAGGTTCCCCGAT-TT--TA-CCA-ATAAACAGT----CGATT-TTTATCGGTATA-GGTC---------------------------------AGCAGTTAC--TTCCC--TTA-GAT--TTGTTTATTTTACGGTCTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCACCAATGAAATGCTg
gi|9 : tTCTGACCAGA-CACTG-TT---AATGTTTG--CTTTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGCCAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTTCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAGTA---------A----CTCACTTTTGAAAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--AAATAATGATTGGGTTTCT---TT---TG------TTTGTT--TTTTTTGTCTTCTGACGCCAGAAGCAGAAGCAGACGATGCCATT--TAT--AATAAATACGATAAAGTAATCGGCTAAAGTAAAGCAGGTTCGTCTATAGCAGGCCTCTTTAAAACACTTGCAAATACTCAA-CATG-------------CTC-AGTGACAATGATCAACGGGAAATA--ACTCT------TA-TTGTA---TA------NNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNN--T--CTTTT---ACATAGAAGTTAC--TTCCC--TTA-GAT--TTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACCCTGGTCTTTGGAAATACAATACGCACAAGATCGCCAACGAAATGCT
gi|11 : tT---AATGTTTT--CTTTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTTGATGATTTAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGATTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTCTC-AGTGACAATGATCTACGGGAAATA--ACTCC------TA-TTGTA---TATA--GTTAGTGTGGTT---------------CCA-ATAAACAGT----CGATT-TTTATCGGTAAA-GGTCAGGGAACCA----GACTAT--GTTTT---CCATAGCAGTTGC--TTCAC--TTA-GAT--TTGTTTATTTCACAGTGTCTACTTCCGTTGTGAAAACACTGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|7 : T---AATGTTTG--CTTTAATATAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGT-----T---TT--TTTTCCGTCTTCTGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTCTC-AGTGACAATGATCTACGGGAAATANNNNNNN------NN-NNNNN---NNNN--NNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNN--T--GTTTT---CCATAGCAGTTGC--TTCAC--TTA-GAT--TTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTTaa
gi|8 : T---AATGTTTG--CTTTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTTATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGC-----T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAGATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACCTGGAAATACTCAA-CATGTTCCCATGTGCGTCTC-AGTGACAATGATCTACGGGAAATA--ACTCC------TA-TTGTA---TATA--NNNNNNNNNNNNNNNNNN--NN--NN-NNN-NNNNNNNNN----NNNNN-NNNNNNNNNNNN-NNNNNNNNNNNNN----NNNTAT--GTTTT---ACATAGCAGTTGC--TTCAC--TTA-GAT--TTGTTTATTTCACGGCGTCTACTTCCATTGTTAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGTTTa
gi|13 : TATTTTCCATGAATCTATGATATTTCCATTAATATTTCCTCCCATGT---TTTTGTTCAATTTTTC-TGACTGTGTCATGCATGCTTCAATATTACTTCATATTTTCTCACTTTTAGAAGAAATGTTTTTT-CTTACTAAAGAACTGGAATAGGTTGT--GGT-----TTGAGTTTCT---GTACATG------TAG-TTGATTCCCCATCTCCAGATGA------TAAAACCAGATGATGTAATTCATAATAA-TAAA-------AAATA------TTTAGTTCTGTAGAACCGTT---AAAATGCCACTTTTAGATGATTGTAAATATTCAA-TATATTCTCATGTGTGCCTTTAGTGAAAACAATCTACGGGGA-TA--ACTCCAGTGTTTA-TAATA---TACA--a
gi|15 : ATGATTGGGTTTCT---TT---TG------GG--TT--TTTTTTGTCTTCCGACGC------CAGAGGCAGCCGATGCCATT--TAT--AATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------CTT-AGTGACAATGATCTACGGGAAATA--ACTCT------TA-TTGTA---TATA--GTAAGTGTGGTTCCCCGA--TC--TA-CCA-ATAAACA--------ATT-TTTATTGGTATA-TGTCAGGGAACCA----AAC--TATGTTTT---ACATAGCAGTTAC--TGC-C--TTA-GAT--TTGTTTATTTCACGGTGTCTACTTCCATTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAACTGCTtgatgtagaaaagtcaatactgatctctgtttatatgtttatttgacatgtctactaactagtttttggaagtaagatacgcacgagatcatcagtgaaatgcttaa
gi|16 : GGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATCTC-AGTGACAATGATCTACGGGAAATA--ACTAT------TA-T
gi|29 : TACTCAAATATGTTTCCATGTGCTCCTT-GGTGACAAACATTTAAGGGAAATA--ACTCtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacggtgtctaattcctttgtgaaaaccccggtctttggaaatacgatacccacaagatcaccaatgaaatgc
gi|11 : ACAA--ATCTAAGTGAAGCA--ACTGC------TA-TGGAA---AACA----TAGTCTGGTTCCCTGA--CCTTTA-CCG-ATAAA-AAT----CGACTGTTTATT-------------GGAACCACACTAAC--T--ATATA---CAATAGGAGTTAT--TTCCC--GTA-GATCATTGTgata
gi|15 : taatgttttctttaatacagatttgaggttgccttcaatttcatttattatcagccatgggaactttacttttgatgatttaatggtatttgtattgaccttgcctcccgtgtgttttttgtttatttttttgtgatttagtaatacatgcatcaataactcacttttgagagtattgttttttacttaaagaactggaataagttatcagataatgattgggtttctgttgtttttttccgtcttccgacgtcagaagcagacaatgtcatttatattaaataaatacgataaagtaatcggctaaagtaatgcaggttcgtttatagcaggcctcttttaaacacttggaaatactcaacatgttcccatgtgcgtctcagtgACAA--ATCTA-AGGCAGTA--ACTGC------TA-T-GTAAAACATA--GTT----TGGTTCCCTGACATA--TA-CCA-ATAAA-AAT----TG----TTTATTGGTA---GATCGGGGAACCACACTTAC--T--ATATA---CAATAAGAGTTAT--TTCCC--GTA-GATCATTGTttatttcacagtgtctacttccgttgtgaaaacactggtctttggaaatacgatacacacaagattgccaatgaaatgcttaa
gi|28 : atgattgggtttcttttgggttttttttgtcttccgacgccagaggcagccgatgccatttataataaatacgataaagtaatcggctaaagtaatgcaggttcgtttatagcaggcctctttaaaacacttggaaatactcaacatgcttagtgTAGTCTGGTTCCCTGC--CC--TA-CCG-ATGAATAGT-------TT-TATAT-GGTTAT-GA-CAGGGAACCA----GAC--T--ttatttcacggtgtctacttccattgtgaaaaccccggtctttggaaatacgatacgcacaagatcgccaatgaactgct
gi|28 : aAGTCTGGTTCCCTG---TCA-TAACCATATAAA-A------CTATT-C--ATCGGTA---GGGCAGGGAACCA----GAC--T--AT
gi|27 : TGATTCCCTGT--TC--TT-ACA-ATAAATAGTTTCCCAATT---TATCGGTAGTTGGTCAGGAAACCA----GAC--T--
gi|12 : c--TA-CCG-ATAAA-AAT----CGACTGTTTATTGGTAAA-A-TCGGGGAACCT----CAC--TA-ACTTTATACAATAAGAGTTAT--TTCCC--GTA-GATCATTGT
gi|22 : ttctgaccagacactgttaatgtttgctttaatacagatttgaggttgtcttcaatttcatttattatcagccatgggaattttactttccatgattcaatggtatttgtattgaccttgcctcccgtgtttttaatttattttttgtgacttcgtaatacatgcatcaataactcacttttgagagtattgtttttcttaaagaactggaataagttagaataatgattgggtttcttttgggctttttttgtctaccgacgccagaagcagacgatgccatttataataaatacgataaagtaatcggctaaagtaatgcaggttcgtttatagcaggcctctttaaaacacttggaaatactcaacatgctcagtgTTT---ACATAGCAGTTGC--TTCCC--TTA-GAT--TTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGACTGCCAATGAAATGCTTtaggtcagcagttacttcccttagatttgtttattttacggtctctacttccgttgtgaaaaccccggtctttggaaatacgatacgcacaagatcaccaatgaaatgct
gi|23 : ATA-CAGTTAT--CTCAC--ATAAGTT--TTGTTTGTTTCATGGTGTCTAATTCCAATGTGCAAAATCTGGTCCTGAGAAACATGACACGCACAAGATAACAATTGAATTGTTTa
gi|13 : gAT--ATGTTTATTTGACA-TGTCTACT-----------AACT--AGTTTTTGGAAGTAAGATACGCACGAGATCATCAGTGAAATGCTT
gi|16 : tattttccatgaatctatgatatttccattaatatttcctcccatgtttttgttcaatttttctgactgtgtcatgcatgcttcaatattacttcatattttctcacttttagaagaaatgttttttcttactaaagaactggaataggttgtggtttgagtttctgtacatgtagttgattccccatctccagatgataaaaccagatgatgtaattcataataataaaaaatatttagttctgtagaaccgttaaaatgccacttttagatgattgtaaatattcaatatattctcatgtgtgcctttagtgaaaacaatctacggggataactccagtgtttataatatacatgatgtagaaaagtcaatactgatctctgtttCACGGTGTCTAATTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCACCAATGAAATGCaa
Alignments
lowQualScore : 111111111 11 222 2222222222 222 2222222222222 11 11111
lowQualScore : 4 4 2 1 5 3 3 555 444 8888888 44 5555 33 444 5 3 000000000 5555 4 44 444 000 444 444 1111111111 33 1 777777 444 2 2 7777777777777 2 00 2 1 0 44 0 1 888888 2 1 11 2 5 22222 33 33 2
lowQualScore : . . . . . . . ... ... ....... .. .... .. ... . . ......... .... . .. ... ... ... ... .......... .. . ...... ... . . ............. . .. . . . .. . . ...... . . .. . . ..... .. .. .
lowQualScore : 9 4 0 0 0 6 4 888 777 7777777 66 7777 11 111 8 4 777777777 7777 1 77 777 111 777 777 3333333333 77 4 777777 888 4 5 4444444444444 5 33 7 0 4 66 3 9 333333 0 0 33 7 3 99999 77 77 7
consensus : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCGN-TCTACCAATAAACAGT----CGATTTTTATCGGTANA-GGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
Reference ( family-228 ) : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTNA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCGGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTNTGGTTCCCCGA-TCTACCGATAAACAGT----CGATTTTTATCGGTANA-GGTCGGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|1 : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACTAAAATCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGAAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTACCGACGT------CAGAAGCAGACAATGTCATTGATATTAAATAAATACGATAAAGTAATCGGCTTAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGACCTACGGGAAATA--ACTCCTATAG-TATATAGTTAGTGTGGTTCCCCAA-TCTACCAATAAACAGT----CGATTCTTATCGGTAAA-GGTCAGGGAACCAGAC--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|10 : CTTTACT----TTTGACCAGACACCGT--TAATGTTTGCT---TTAATATAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCTCGTGTATTTTTTGTTTA-TTTTTTGTGACTTTGTAATACATGCATCAACA---------A----ATCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--GAATAACGATTGGGCTTCT---TT---TG------T---GT--TT-----TCTTCCGACGC------CAGAAGCAAACGATGCCATTTATA--AA--AAATACAATAAAGTAATCGGCT-AAGTAATGCAGGTTCGTTTATAGCTGGCCTCTTTAAAACACTTTGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTAAGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAATTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATATGATACGCACAGGATCCCCAATGAAATGCT
gi|11 : t--TAATGTTTTCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTTGATGATTTAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGATTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATAGTTAGTGTGGTTCC-----------AATAAACAGT----CGATTTTTATCGGTAAA-GGTCAGGGAACCAGAC--TATGTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACAGTGTCTACTTCCGTTGTGAAAACACTGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|12 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGT--TTTTAATTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TT---TGGGC---T---TT--TTTT--GTCTACCGACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATAAAGTTAGTGAGGTTCCCCGATTTTACCAATAAACAGT----CGATTTTTATCGGTATA-GGTC--------------------------AGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTTACGGTCTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCACCAATGAAATGCTaa
gi|13 : TATTTTCCATGAATCTATGATATTTCCATTAATATTTCCTCCCATGT---TTTTGTTCAATTTTTC-TGACTGTGTCATGCATGCTTCAATATTACTTCATATTTTCTCACTTTTAGAAGAAATGTTTTTT-CTTACTAAAGAACTGGAATAGGTTGT--GGT-----TTGAGTTTCT---GTACATG------TAG-TTGATTCCCCATCTCCAGATGA------TAAAACCAGATGATGTAATTCATAAT-AATAA-------AAAATATTT------AGTTCTGTAGAACCGT---TAAAATGCCACTTTTAGATGATTGTAAATATTCAA-TATATTCTCATGTGTGCCTTTAGTGAAAACAATCTACGGG-GATA--ACTC-CAGTG-TTTATAAT
gi|13 : ATATGTTTATTTGACA-TGTCTACT-----------AACT--AGTTTTTGGAAGTAAGATACGCACGAGATCATCAGTGAAATGCTTatacatgatgtagaaaagtcaatactgatctctgtttatatgtttatttgacatgtctactaactagtttttggaagtaagatacgcacgagatcatcagtgaaatgcttaa
gi|14 : tattttccatgaatctatgatatttccattaatatttcctcccatgtttttgttcaatttttctgactgtgtcatgcatgcttcaatattacttcatattttctcacttttagaagaaatgttttttcttactaaagaactggaataggttgtggtttgagtttctgtacatgtagttgattccccatctccagatgataaaaccagatgatgtaattcataataataaaaaatatttagttctgtagaaccgttaaaatgccacttttagatgattgtaaatattcaatatattctcatgtgtgcctttagtgaaaacaatctacggggataactccagtgtttataatatacatgatgtagaaaagtcaatactgatctctgtttAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGATACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCTTTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATCGTATTTT-CTTA---AAGAACTGGAATAAG---TCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTTCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATTGGCTAAAGTAATGCAGGTTCATTTATAGCAGGCCTCTTTTCAACTCTTGGAAaa
gi|15 : ATGATTGGGTTTCT---TT---TG------GG--TT--TTTTTTGTCTTCCGACGC------CAGAGGCAGCCGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TTAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTAAGTGTGGTTCCCCGA-TCTACCAATAAACA--------ATTTTTATTGGTATA-TGTCAGGGAACCAAAC--TATGTTTTACATAGCAGTTAC--TGCC---TTA-GATTTGTTTATTTCACGGTGTCTACTTCCATTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAACTGCT
gi|16 : GGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTATTATTG-
gi|16 : CACGGTGTCTAATTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCACCAATGAAATGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacggtgtctaattcctttgtgaaaaccccggtctttggaaatacgatacccacaagatcaccaatgaaatgc
gi|17 : ggcctctttaaaacacttggaaatactcaacatgttcccatgtgcatctcagtgacaatgatctacgggaaataactattattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCATGTGTTTTTTGTTCA-TTTTTTGTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAA
gi|18 : AAACGAAAA---TTGAA---AGAG-------TATTTTCAG--A--TCAGCTTT---------TGGCCAAA---TGC--TTAT-TTTACTCCCTTAAT
gi|18 : TTCAGATCAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTTA-ATTAAAATACAATGATTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TGTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTtaaaatacaatgattaaaatggaaattgaaagagtattttcaaaatttacctttacttgtgaccagacactgttaatgtttgctttaatacagatttgaggt
gi|19 : aaacgaaaattgaaagagtattAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCTGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCC-TGT
gi|2 : ATGCTTA-TTTGACTTTCTAA-ATTAAAATGCAATGCTTAAAATCGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGTT---TTAATACAGATTTGAGGTTGTCTTCAATTTTATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCATCCCGCGTGTTTTTTGTTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TG---TG------T---AT--GTTTTTGTCTTCTGACGC------CAGAAGCAGAAGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAA-GTAGTGCAGGTTCGTTTATAGCAAGCCTCTTTAAAAAAATTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNT--ATTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCGCGGTGTCTACTTCCATTGTGAAAAACCCGGTTTTTGGAAATACGATACGTACAAGATCGCCAATGAAATGCT
gi|20 : CTCTAGATAAGGTTTTGACTGAATGAATA-TTTTAC-CCCTGATATTAAAAT-TAGTGCTGAAAATTAAAACTTCTGAAGTCAGAA-------TAT
gi|21 : AATGGAAA---CTGAA---AGAG-------TATTTTCgtattggttatgtttcaaaacaaataataagacaaaaccactgatttaaaatgtctgtacttcaacac
gi|21 : GATCAGTTATTGGCCATATGCTTA-TTGTACGCCCTAA-ATT-AAATGCAATGCTTAAAATGGA------------------------CATTTTCAA--AACTTACCTCTATT----TGCAAGTAG--ACTGTCATAATGtgatcagttattggccatatgcttattgtacgccctaaattaaatgcaatgcttaaaatggacattttcaaaacttacctctatttgcaagtagactgtcataatg
gi|22 : aatggaaactgaaagagtattttctTTTACATAGCAGTTGC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGACTGCCAATGAAATGCTT
gi|23 : ATA-CAGTTAT--CTCAC--ATAAGTTTTGTTTGTTTCATGGTGTCTAATTCCAATGTGCAAAATCTGGTCCTGAGAAACATGACACGCACAAGATAACAATTGAATTGTTTa
gi|24 : gCTCCAGATAAGCTTTTGGCCCAATGCTTA-TTTTACCCCCTAA-AATAAAATTCAATGCTTAAAATGGAAA---CTGAA---AGAG-------TATTTTC
gi|25 : -TTTTACTCCCTTA-ATTTAAGTACAATACTTAAAATGGAAA---TTAAA---AAAAACACAATTATTTTCCATGAATCTAtgatcagttattgg
gi|26 : TGCTCCAGAT-AGCTTTTAGCCAAATGCTTATTTTTTCTCCCTAA-ATTTAATTGCAATGCTTAAA
gi|27 : TGATTCCCTGT-TCTTACAATAAATAGTTTCCCAATTT--ATCGGTAGTTGGTCAGGAAACCAGAC--T--g
gi|28 : cTAGTCTGGTTCCCTGC-CCTACCGATGAATAGT-------TTTATAT-GGT-TA-TGACAGGGAACCAGAC--T--
gi|29 : aTACTCAAATATGTTTCCATGTGCTCC-TTGGTGACAAACATTTAAGGGAAATA--ACTC
gi|3 : AA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTG------CCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCGTGTGTTTTTTGTTCATTTTTT-GTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGATTAAGTTAGCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCAACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTATGGGAAATA--ACTATTATTGNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--N--NNNNNNNNNNNNNGTAACAATTCACTGTTG-CGTTAGTTTATTTCACGGTGTCTACTTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCGCCAATGAAATGCTgata
gi|30 : TGCTCCAGGTAATTTTTTAGCCAAAAAATTA-TTTTAC
gi|4 : AATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATATACCTTTACT----TCTGACCAGACATTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTAACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGTTTTTTGTTAATTTTT--GTGACTTCATAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCTTTTGT---TG------T---TG--TTTTTTGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATATGATAAAGTAATCGGCTAAAGTCATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAATTACTCA---------CCATG-----C-TCAGTGACAATGATCTACGGGAAATA--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNTA--T--GCTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACTCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTcacgaaaat
gi|5 : GAA---AGAG-------TATTTTCAA--AATTTATCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTTAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAATTGGAATAAGTTA--AAATAATGATTGTTTTTTT---TT---TGTTTGTTT---TT--TTTTTTGTCTTCTGACGC------CAGAAGCAGACGATGCCATTTAT----AATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCTGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAAT
gi|6 : TTTACT----TCTGACCAGACAATGT--TAATGTTTGCT---TTAATACAGATCTGAGGTTGCTTTCAATTTCATT-ATTATCAACCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGCTTTTTGTTTATTTT-TTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTCGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------TAGAAGCAGACAATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTACTG-TATATANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTAAAAACCCCTGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|7 : --TAATGTTTGCT---TTAATATAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGT-----T---TT--TTTTCCGTCTTCTGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTTg
gi|8 : --TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTTATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGC-----T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAGATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACCTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATANNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGCGTCTACTTCCATTGTTAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGTTTa
gi|9 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGCCAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTTCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAGTA---------A----CTCACTTTTGAAAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--AAATAATGATTGGGTTTCT---TT---TG------TTTGTT--TTTTTTGTCTTCTGACGCCAGAAGCAGAAGCAGACGATGCCATTTAT----AATAAATACGATAAAGTAATCGGCTAAAGTAAAGCAGGTTCGTCTATAGCAGGCCTCTTTAAAACACTTGCAAATACTCAA-CATG-------------C-TCAGTGACAATGATCAACGGGAAATA--ACTCTTATTG-TATA----NNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN--T--CTTTTACATAGAAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACCCTGGTCTTTGGAAATACAATACGCACAAGATCGCCAACGAAATGCTa
Alignments
lowQualScore : 111111111 11 11 2222222222 222 2222222222222 11 11
lowQualScore : 4 4 2 5 3 3 555 444 8888888 44 5555 33 444 5 3 000000000 5555 4 44 444 88 444 444 1111111111 33 1 777777 444 1 2 7777777777777 2 00 2 0 44 0 888888 0 1 333 0 44 33 33 33 2
lowQualScore : . . . . . . ... ... ....... .. .... .. ... . . ......... .... . .. ... .. ... ... .......... .. . ...... ... . . ............. . .. . . .. . ...... . . ... . .. .. .. .. .
lowQualScore : 9 4 0 0 6 4 888 777 7777777 66 7777 11 111 8 4 777777777 7777 1 77 777 00 777 777 3333333333 77 4 777777 888 0 5 4444444444444 5 33 7 4 66 3 333333 3 0 999 3 77 77 77 77 7
consensus : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
Reference ( family-228 ) : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-NAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|1 : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACTAAAATCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGAAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTACCGACGT------CAGAAGCAGACAATGTCATTGATATTAAATAAATACGATAAAGTAATCGGCTTAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGACCTACGGGAAATA--ACTCCTATAG-TATATAGTTAGTGTGGTTCCCCA-ATCTACCAATAAACAGT----CGATTCTTATCGGTA-AAGGTCAGGGAACCAGAC--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|10 : CTTTACT----TTTGACCAGACACCGT--TAATGTTTGCT---TTAATATAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCTCGTGTATTTTTTGTTTA-TTTTTTGTGACTTTGTAATACATGCATCAACA---------A----ATCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--GAATAACGATTGGGCTTCT---TT---TG------T---GT--TT-----TCTTCCGACGC------CAGAAGCAAACGATGCCATTTATA--AA--AAATACAATAAAGTAATCGGCT-AAGTAATGCAGGTTCGTTTATAGCTGGCCTCTTTAAAACACTTTGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTAAGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAATTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATATGATACGCACAGGATCCCCAATGAAATGCT
gi|11 : t--TAATGTTTTCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTTGATGATTTAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGATTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATAGTTAGTGTGGTT-----------CCAATAAACAGT----CGATTTTTATCGGTA-AAGGTCAGGGAACCAGACTAT--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACAGTGTCTACTTCCGTTGTGAAAACACTGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|12 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGT--TTTTAATTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TT---TGGGC---T---TT--TTTT--GTCTACCGACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATAAAGTTAGTGAGGTTCCCCGATTTTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTC--------------------------AGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTTACGGTCTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCACCAATGAAATGCTaa
gi|13 : TATTTTCCATGAATCTATGATATTTCCATTAATATTTCCTCCCATGT---TTTTGTTCAATTTTTC-TGACTGTGTCATGCATGCTTCAATATTACTTCATATTTTCTCACTTTTAGAAGAAATGTTTTTT-CTTACTAAAGAACTGGAATAGGTTGT--GGT-----TTGAGTTTCT---GTACATG------TAG-TTGATTCCCCATCTCCAGATGA------TAAAACCAGATGATGTAATTCATAAT-AATAA-------AAAATATTT------AGTTCTGTAGAACCGT---TAAAATGCCACTTTTAGATGATTGTAAATATTCAA-TATATTCTCATGTGTGCCTTTAGTGAAAACAATCTACGGG-GATA--ACTC-CAGTG-TTTATAAT
gi|13 : ATATGTTTATTTGACA-TGTCTACT-----------AACT--AGTTTTTGGAAGTAAGATACGCACGAGATCATCAGTGAAATGCTTatacatgatgtagaaaagtcaatactgatctctgtttatatgtttatttgacatgtctactaactagtttttggaagtaagatacgcacgagatcatcagtgaaatgcttaa
gi|14 : tattttccatgaatctatgatatttccattaatatttcctcccatgtttttgttcaatttttctgactgtgtcatgcatgcttcaatattacttcatattttctcacttttagaagaaatgttttttcttactaaagaactggaataggttgtggtttgagtttctgtacatgtagttgattccccatctccagatgataaaaccagatgatgtaattcataataataaaaaatatttagttctgtagaaccgttaaaatgccacttttagatgattgtaaatattcaatatattctcatgtgtgcctttagtgaaaacaatctacggggataactccagtgtttataatatacatgatgtagaaaagtcaatactgatctctgtttAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGATACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCTTTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATCGTATTTT-CTTA---AAGAACTGGAATAAG---TCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTTCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATTGGCTAAAGTAATGCAGGTTCATTTATAGCAGGCCTCTTTTCAACTCTTGGAAaa
gi|15 : ATGATTGGGTTTCT---TT---TG------GG--TT--TTTTTTGTCTTCCGACGC------CAGAGGCAGCCGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TTAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTAAGTGTGGTTCCCCG-ATCTACCAATAAACA--------ATTTTTATTGGTA-TATGTCAGGGAACCAAAC--TATGTTTTACATAGCAGTTAC--TGCC---TTA-GATTTGTTTATTTCACGGTGTCTACTTCCATTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAACTGCT
gi|16 : GGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTATTATTG-
gi|16 : CACGGTGTCTAATTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCACCAATGAAATGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacggtgtctaattcctttgtgaaaaccccggtctttggaaatacgatacccacaagatcaccaatgaaatgc
gi|17 : ggcctctttaaaacacttggaaatactcaacatgttcccatgtgcatctcagtgacaatgatctacgggaaataactattattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCATGTGTTTTTTGTTCA-TTTTTTGTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAA
gi|18 : AAACGAAAA---TTGAA---AGAG-------TATTTTCAG--A--TCAGCTTT---------TGGCCAAA---TGC--TTAT-TTTACTCCCTTAAT
gi|18 : TTCAGATCAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTTA-ATTAAAATACAATGATTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TGTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTtaaaatacaatgattaaaatggaaattgaaagagtattttcaaaatttacctttacttgtgaccagacactgttaatgtttgctttaatacagatttgaggt
gi|19 : aaacgaaaattgaaagagtattAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCTGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCC-TGT
gi|2 : ATGCTTA-TTTGACTTTCTAA-ATTAAAATGCAATGCTTAAAATCGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGTT---TTAATACAGATTTGAGGTTGTCTTCAATTTTATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCATCCCGCGTGTTTTTTGTTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TG---TG------T---AT--GTTTTTGTCTTCTGACGC------CAGAAGCAGAAGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAA-GTAGTGCAGGTTCGTTTATAGCAAGCCTCTTTAAAAAAATTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNT--ATTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCGCGGTGTCTACTTCCATTGTGAAAAACCCGGTTTTTGGAAATACGATACGTACAAGATCGCCAATGAAATGCT
gi|20 : CTCTAGATAAGGTTTTGACTGAATGAATA-TTTTAC-CCCTGATATTAAAAT-TAGTGCTGAAAATTAAAACTTCTGAAGTCAGAA-------TAT
gi|21 : AATGGAAA---CTGAA---AGAG-------TATTTTCgtattggttatgtttcaaaacaaataataagacaaaaccactgatttaaaatgtctgtacttcaacac
gi|21 : GATCAGTTATTGGCCATATGCTTA-TTGTACGCCCTAA-ATT-AAATGCAATGCTTAAAATGGA------------------------CATTTTCAA--AACTTACCTCTATT----TGCAAGTAG--ACTGTCATAATGtgatcagttattggccatatgcttattgtacgccctaaattaaatgcaatgcttaaaatggacattttcaaaacttacctctatttgcaagtagactgtcataatg
gi|22 : aatggaaactgaaagagtattttctTTTACATAGCAGTTGC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGACTGCCAATGAAATGCTT
gi|23 : ATA-CAGTTAT--CTCAC--ATAAGTTTTGTTTGTTTCATGGTGTCTAATTCCAATGTGCAAAATCTGGTCCTGAGAAACATGACACGCACAAGATAACAATTGAATTGTTTa
gi|24 : gCTCCAGATAAGCTTTTGGCCCAATGCTTA-TTTTACCCCCTAA-AATAAAATTCAATGCTTAAAATGGAAA---CTGAA---AGAG-------TATTTTC
gi|25 : -TTTTACTCCCTTA-ATTTAAGTACAATACTTAAAATGGAAA---TTAAA---AAAAACACAATTATTTTCCATGAATCTAtgatcagttattgg
gi|26 : TGCTCCAGAT-AGCTTTTAGCCAAATGCTTATTTTTTCTCCCTAA-ATTTAATTGCAATGCTTAAA
gi|27 : TGATTCCCTG-TTCTTACAATAAATAGTTTCCCAA--TTTATCGGTAGTTGGTCAGGAAACCAGAC--T--g
gi|28 : cTAGTCTGGTTCCCTG-CCCTACCGATGAATAGT-------TTTATAT-GGT--TATGACAGGGAACCAGAC--T--
gi|29 : aTACTCAAATATGTTTCCATGTGCTCC-TTGGTGACAAACATTTAAGGGAAATA--ACTC
gi|3 : AA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTG------CCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCGTGTGTTTTTTGTTCATTTTTT-GTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGATTAAGTTAGCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCAACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTATGGGAAATA--ACTATTATTGNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNNNNNNNNGTAACAATTCACTGTTG-CGTTAGTTTATTTCACGGTGTCTACTTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCGCCAATGAAATGCTgata
gi|30 : TGCTCCAGGTAATTTTTTAGCCAAAAAATTA-TTTTAC
gi|4 : AATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATATACCTTTACT----TCTGACCAGACATTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTAACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGTTTTTTGTTAATTTTT--GTGACTTCATAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCTTTTGT---TG------T---TG--TTTTTTGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATATGATAAAGTAATCGGCTAAAGTCATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAATTACTCA---------CCATG-----C-TCAGTGACAATGATCTACGGGAAATA--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNTA--T--GCTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACTCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTcacgaaaat
gi|5 : GAA---AGAG-------TATTTTCAA--AATTTATCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTTAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAATTGGAATAAGTTA--AAATAATGATTGTTTTTTT---TT---TGTTTGTTT---TT--TTTTTTGTCTTCTGACGC------CAGAAGCAGACGATGCCATTTAT----AATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCTGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAAT
gi|6 : TTTACT----TCTGACCAGACAATGT--TAATGTTTGCT---TTAATACAGATCTGAGGTTGCTTTCAATTTCATT-ATTATCAACCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGCTTTTTGTTTATTTT-TTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTCGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------TAGAAGCAGACAATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTACTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTAAAAACCCCTGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|7 : --TAATGTTTGCT---TTAATATAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGT-----T---TT--TTTTCCGTCTTCTGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTTg
gi|8 : --TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTTATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGC-----T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAGATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACCTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGCGTCTACTTCCATTGTTAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGTTTa
gi|9 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGCCAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTTCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAGTA---------A----CTCACTTTTGAAAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--AAATAATGATTGGGTTTCT---TT---TG------TTTGTT--TTTTTTGTCTTCTGACGCCAGAAGCAGAAGCAGACGATGCCATTTAT----AATAAATACGATAAAGTAATCGGCTAAAGTAAAGCAGGTTCGTCTATAGCAGGCCTCTTTAAAACACTTGCAAATACTCAA-CATG-------------C-TCAGTGACAATGATCAACGGGAAATA--ACTCTTATTG-TATA----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--T--CTTTTACATAGAAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACCCTGGTCTTTGGAAATACAATACGCACAAGATCGCCAACGAAATGCTa
Alignments
lowQualScore : 111111111 11 11 2222222222 222 2222222222222 11 11
lowQualScore : 4 4 2 5 3 3 555 444 8888888 44 5555 33 444 5 3 000000000 5555 4 44 444 88 444 444 1111111111 33 1 777777 444 1 2 7777777777777 2 00 2 0 44 0 888888 0 1 333 0 44 33 33 33 2
lowQualScore : . . . . . . ... ... ....... .. .... .. ... . . ......... .... . .. ... .. ... ... .......... .. . ...... ... . . ............. . .. . . .. . ...... . . ... . .. .. .. .. .
lowQualScore : 9 4 0 0 6 4 888 777 7777777 66 7777 11 111 8 4 777777777 7777 1 77 777 00 777 777 3333333333 77 4 777777 888 0 5 4444444444444 5 33 7 4 66 3 333333 3 0 444 3 77 77 77 77 7
consensus : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
Reference ( family-228 ) : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|1 : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACTAAAATCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGAAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTACCGACGT------CAGAAGCAGACAATGTCATTGATATTAAATAAATACGATAAAGTAATCGGCTTAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGACCTACGGGAAATA--ACTCCTATAG-TATATAGTTAGTGTGGTTCCCCA-ATCTACCAATAAACAGT----CGATTCTTATCGGTA-AAGGTCAGGGAACCAGAC--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|10 : CTTTACT----TTTGACCAGACACCGT--TAATGTTTGCT---TTAATATAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCTCGTGTATTTTTTGTTTA-TTTTTTGTGACTTTGTAATACATGCATCAACA---------A----ATCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--GAATAACGATTGGGCTTCT---TT---TG------T---GT--TT-----TCTTCCGACGC------CAGAAGCAAACGATGCCATTTATA--AA--AAATACAATAAAGTAATCGGCT-AAGTAATGCAGGTTCGTTTATAGCTGGCCTCTTTAAAACACTTTGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTAAGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAATTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATATGATACGCACAGGATCCCCAATGAAATGCT
gi|11 : t--TAATGTTTTCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTTGATGATTTAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGATTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATAGTTAGTGTGGTT-----------CCAATAAACAGT----CGATTTTTATCGGTA-AAGGTCAGGGAACCAGACTAT--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACAGTGTCTACTTCCGTTGTGAAAACACTGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|12 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGT--TTTTAATTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TT---TGGGC---T---TT--TTTT--GTCTACCGACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATAAAGTTAGTGAGGTTCCCCGATTTTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTC--------------------------AGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTTACGGTCTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCACCAATGAAATGCTaa
gi|13 : TATTTTCCATGAATCTATGATATTTCCATTAATATTTCCTCCCATGT---TTTTGTTCAATTTTTC-TGACTGTGTCATGCATGCTTCAATATTACTTCATATTTTCTCACTTTTAGAAGAAATGTTTTTT-CTTACTAAAGAACTGGAATAGGTTGT--GGT-----TTGAGTTTCT---GTACATG------TAG-TTGATTCCCCATCTCCAGATGA------TAAAACCAGATGATGTAATTCATAAT-AATAA-------AAAATATTT------AGTTCTGTAGAACCGT---TAAAATGCCACTTTTAGATGATTGTAAATATTCAA-TATATTCTCATGTGTGCCTTTAGTGAAAACAATCTACGGG-GATA--ACTC-CAGTG-TTTATAAT
gi|13 : ATATGTTTATTTGACA-TGTCTACT-----------AACT--AGTTTTTGGAAGTAAGATACGCACGAGATCATCAGTGAAATGCTTatacatgatgtagaaaagtcaatactgatctctgtttatatgtttatttgacatgtctactaactagtttttggaagtaagatacgcacgagatcatcagtgaaatgcttaa
gi|14 : tattttccatgaatctatgatatttccattaatatttcctcccatgtttttgttcaatttttctgactgtgtcatgcatgcttcaatattacttcatattttctcacttttagaagaaatgttttttcttactaaagaactggaataggttgtggtttgagtttctgtacatgtagttgattccccatctccagatgataaaaccagatgatgtaattcataataataaaaaatatttagttctgtagaaccgttaaaatgccacttttagatgattgtaaatattcaatatattctcatgtgtgcctttagtgaaaacaatctacggggataactccagtgtttataatatacatgatgtagaaaagtcaatactgatctctgtttAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGATACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCTTTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATCGTATTTT-CTTA---AAGAACTGGAATAAG---TCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTTCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATACGATAAAGTAATTGGCTAAAGTAATGCAGGTTCATTTATAGCAGGCCTCTTTTCAACTCTTGGAAaa
gi|15 : ATGATTGGGTTTCT---TT---TG------GG--TT--TTTTTTGTCTTCCGACGC------CAGAGGCAGCCGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TTAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTAAGTGTGGTTCCCCG-ATCTACCAATAAACA--------ATTTTTATTGGTA-TATGTCAGGGAACCAAAC--TATGTTTTACATAGCAGTTAC--TGCC---TTA-GATTTGTTTATTTCACGGTGTCTACTTCCATTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAACTGCT
gi|16 : GGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTATTATTG-
gi|16 : CACGGTGTCTAATTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCACCAATGAAATGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacggtgtctaattcctttgtgaaaaccccggtctttggaaatacgatacccacaagatcaccaatgaaatgc
gi|17 : ggcctctttaaaacacttggaaatactcaacatgttcccatgtgcatctcagtgacaatgatctacgggaaataactattattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCATGTGTTTTTTGTTCA-TTTTTTGTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAA
gi|18 : AAACGAAAA---TTGAA---AGAG-------TATTTTCAG--A--TCAGCTTT---------TGGCCAAA---TGC--TTAT-TTTACTCCCTTAAT
gi|18 : TTCAGATCAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTTA-ATTAAAATACAATGATTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TGTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTtaaaatacaatgattaaaatggaaattgaaagagtattttcaaaatttacctttacttgtgaccagacactgttaatgtttgctttaatacagatttgaggt
gi|19 : aaacgaaaattgaaagagtattAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCTGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCC-TGT
gi|2 : ATGCTTA-TTTGACTTTCTAA-ATTAAAATGCAATGCTTAAAATCGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGTT---TTAATACAGATTTGAGGTTGTCTTCAATTTTATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCATCCCGCGTGTTTTTTGTTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TG---TG------T---AT--GTTTTTGTCTTCTGACGC------CAGAAGCAGAAGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAA-GTAGTGCAGGTTCGTTTATAGCAAGCCTCTTTAAAAAAATTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNT--ATTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCGCGGTGTCTACTTCCATTGTGAAAAACCCGGTTTTTGGAAATACGATACGTACAAGATCGCCAATGAAATGCT
gi|20 : CTCTAGATAAGGTTTTGACTGAATGAATA-TTTTAC-CCCTGATATTAAAAT-TAGTGCTGAAAATTAAAACTTCTGAAGTCAGAA-------TAT
gi|21 : AATGGAAA---CTGAA---AGAG-------TATTTTCgtattggttatgtttcaaaacaaataataagacaaaaccactgatttaaaatgtctgtacttcaacac
gi|21 : GATCAGTTATTGGCCATATGCTTA-TTGTACGCCCTAA-ATT-AAATGCAATGCTTAAAATGGA------------------------CATTTTCAA--AACTTACCTCTATT----TGCAAGTAG--ACTGTCATAATGtgatcagttattggccatatgcttattgtacgccctaaattaaatgcaatgcttaaaatggacattttcaaaacttacctctatttgcaagtagactgtcataatg
gi|22 : aatggaaactgaaagagtattttctTTTACATAGCAGTTGC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGACTGCCAATGAAATGCTT
gi|23 : ATA-CAGTTAT--CTCAC--ATAAGTTTTGTTTGTTTCATGGTGTCTAATTCCAATGTGCAAAATCTGGTCCTGAGAAACATGACACGCACAAGATAACAATTGAATTGTTTa
gi|24 : gCTCCAGATAAGCTTTTGGCCCAATGCTTA-TTTTACCCCCTAA-AATAAAATTCAATGCTTAAAATGGAAA---CTGAA---AGAG-------TATTTTC
gi|25 : -TTTTACTCCCTTA-ATTTAAGTACAATACTTAAAATGGAAA---TTAAA---AAAAACACAATTATTTTCCATGAATCTAtgatcagttattgg
gi|26 : TGCTCCAGAT-AGCTTTTAGCCAAATGCTTATTTTTTCTCCCTAA-ATTTAATTGCAATGCTTAAA
gi|27 : TGATTCCCTG-TTCTTACAATAAATAGTTTCCCAA--TTTATCGGTAGTTGGTCAGGAAACCAGAC--T--g
gi|28 : cTAGTCTGGTTCCCTG-CCCTACCGATGAATAGT-------TTTATAT-GGT--TATGACAGGGAACCAGAC--T--
gi|29 : aTACTCAAATATGTTTCCATGTGCTCC-TTGGTGACAAACATTTAAGGGAAATA--ACTC
gi|3 : AA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTG------CCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCGTGTGTTTTTTGTTCATTTTTT-GTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGATTAAGTTAGCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCAACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTATGGGAAATA--ACTATTATTGNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNNNNNNNNGTAACAATTCACTGTTG-CGTTAGTTTATTTCACGGTGTCTACTTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCGCCAATGAAATGCTgata
gi|30 : TGCTCCAGGTAATTTTTTAGCCAAAAAATTA-TTTTAC
gi|4 : AATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATATACCTTTACT----TCTGACCAGACATTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTAACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGTTTTTTGTTAATTTTT--GTGACTTCATAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCTTTTGT---TG------T---TG--TTTTTTGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATA----ATAAATATGATAAAGTAATCGGCTAAAGTCATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAATTACTCA---------CCATG-----C-TCAGTGACAATGATCTACGGGAAATA--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNTA--T--GCTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACTCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTcacgaaaat
gi|5 : GAA---AGAG-------TATTTTCAA--AATTTATCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTTAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAATTGGAATAAGTTA--AAATAATGATTGTTTTTTT---TT---TGTTTGTTT---TT--TTTTTTGTCTTCTGACGC------CAGAAGCAGACGATGCCATTTAT----AATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCTGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAAT
gi|6 : TTTACT----TCTGACCAGACAATGT--TAATGTTTGCT---TTAATACAGATCTGAGGTTGCTTTCAATTTCATT-ATTATCAACCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGCTTTTTGTTTATTTT-TTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTCGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------TAGAAGCAGACAATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTACTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTAAAAACCCCTGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|7 : --TAATGTTTGCT---TTAATATAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGT-----T---TT--TTTTCCGTCTTCTGACGT------CAGAAGCAGACAATGTCATTTATATTAAATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTTg
gi|8 : --TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTTATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGC-----T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATTAGATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACCTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGCGTCTACTTCCATTGTTAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGTTTa
gi|9 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGCCAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTTCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAGTA---------A----CTCACTTTTGAAAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--AAATAATGATTGGGTTTCT---TT---TG------TTTGTT--TTTTTTGTCTTCTGACGCCAGAAGCAGAAGCAGACGATGCCATTTAT----AATAAATACGATAAAGTAATCGGCTAAAGTAAAGCAGGTTCGTCTATAGCAGGCCTCTTTAAAACACTTGCAAATACTCAA-CATG-------------C-TCAGTGACAATGATCAACGGGAAATA--ACTCTTATTG-TATA----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--T--CTTTTACATAGAAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACCCTGGTCTTTGGAAATACAATACGCACAAGATCGCCAACGAAATGCTa
blockSeqs : C T T T A A CTT GTC ACACAAT TG . CA CCC T T TTACTTCAT TTTT T TA CTA TC TTT ACA TTTGTTT GA C CAGAAG TTA A A TTCCCATGTGCGT T NN N AT TTCCCA N AGT TA AT AA TG A
blockSeqs : A . T . A G . . . . . . . T T . . T TA . TC . . GGCT . C . TTA T . TTCTCATGTGTGC . NN . N NN C NN NN . . . .
blockSeqs : C . G . A G . . . . . . . A C . . T TA . GC . . TTTG . T . TTA A . TTCCCATGTGCAT . NN . A CG C AA TA . . . .
blockSeqs : A . C . A T . . . . . . . T T . . T T . TC . . TAG . T . TTA T . TTTCCATGTGCTC . . . N CG T AT TA . . . .
blockSeqs : A . T . T A . . . . . . . T T . . T T . TC . . GG . T . TTA T . TTCCCATGTGCGT . . . T NN N AT . . . . .
blockSeqs : . . T . T G . . . . . . . T T . . T T . TC . . TT . C . AT A . TTCCCATGTGCAT . . . C NN C NN . . . . .
blockSeqs : . . . . . . . . . . . . T T . . T T . T . . CT . T . A A . TTCCCATGTGCGT . . . N NN N NN . . . . .
blockSeqs : . . . . . . . . T T . . T T . . . . T . T . . A . TTCCCATGTGCGT . . . N NN N NN . . . . .
blockSeqs : . . . . . . . T T . . T T . . . . T . C . . A . CCATG . . . N NN N NN . . . . .
blockSeqs : . . . . . . . T T . . T T . . . . T . C . . A . A . . . N NN N NN . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . C . . A . A . . . N NN N NN . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . T . . T . . . . . N NN N NN . . . . .
blockSeqs : . . . . . . . . . . . . . . . T . . . . T . . . . . N . N NN . . . . .
blockSeqs : . . . . . . . . . . . . . . T . . . . T . . . . . . . . T . . . . .
blockSeqs : . . A . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : **** T* TC TA*
originalCons : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATTAAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
finalCons : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATATA-AATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
Alignments
lowQualScore : 111111111 11 11 2222222222 3333 2222222222222 11 11
lowQualScore : 4 4 2 5 3 3 555 444 8888888 44 5555 33 444 5 3 000000000 5555 4 44 444 88 444 444 1111111111 33 1 777777 5555 1 2 7777777777777 2 00 2 0 44 0 888888 2 1 333 0 44 33 33 33 2
lowQualScore : . . . . . . ... ... ....... .. .... .. ... . . ......... .... . .. ... .. ... ... .......... .. . ...... .... . . ............. . .. . . .. . ...... . . ... . .. .. .. .. .
lowQualScore : 9 4 0 0 6 4 888 777 7777777 66 7777 11 111 8 4 777777777 7777 1 77 777 00 777 777 3333333333 77 4 777777 5555 0 5 4444444444444 5 33 7 4 66 3 333333 0 0 444 3 77 77 77 77 7
consensus : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATA-T-AAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
Reference ( family-228 ) : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATA-T-AAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTNAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTTAGTGTGGTTCCCCG-NTCTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTCAGGGAACCAGAC--T--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|1 : TGCTCCAGATAAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTAA-ATTAAAATGCAATGCTTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACTAAAATCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGAAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTACCGACGT------CAGAAGCAGACAATGTCATTGATA-TTAAATAAATACGATAAAGTAATCGGCTTAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGACCTACGGGAAATA--ACTCCTATAG-TATATAGTTAGTGTGGTTCCCCA-ATCTACCAATAAACAGT----CGATTCTTATCGGTA-AAGGTCAGGGAACCAGAC--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|10 : CTTTACT----TTTGACCAGACACCGT--TAATGTTTGCT---TTAATATAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCTCGTGTATTTTTTGTTTA-TTTTTTGTGACTTTGTAATACATGCATCAACA---------A----ATCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--GAATAACGATTGGGCTTCT---TT---TG------T---GT--TT-----TCTTCCGACGC------CAGAAGCAAACGATGCCATTTATA---AA--AAATACAATAAAGTAATCGGCT-AAGTAATGCAGGTTCGTTTATAGCTGGCCTCTTTAAAACACTTTGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTAAGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAATTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATATGATACGCACAGGATCCCCAATGAAATGCT
gi|11 : t--TAATGTTTTCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTTGATGATTTAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGATTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATT-AAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATAGTTAGTGTGGTT-----------CCAATAAACAGT----CGATTTTTATCGGTA-AAGGTCAGGGAACCAGACTAT--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACAGTGTCTACTTCCGTTGTGAAAACACTGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTT
gi|12 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGT--TTTTAATTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TT---TGGGC---T---TT--TTTT--GTCTACCGACGC------CAGAAGCAGACGATGCCATTTATA-----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATAAAGTTAGTGAGGTTCCCCGATTTTACCAATAAACAGT----CGATTTTTATCGGTA-TAGGTC--------------------------AGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTTACGGTCTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCACCAATGAAATGCTaa
gi|13 : TATTTTCCATGAATCTATGATATTTCCATTAATATTTCCTCCCATGT---TTTTGTTCAATTTTTC-TGACTGTGTCATGCATGCTTCAATATTACTTCATATTTTCTCACTTTTAGAAGAAATGTTTTTT-CTTACTAAAGAACTGGAATAGGTTGT--GGT-----TTGAGTTTCT---GTACATG------TAG-TTGATTCCCCATCTCCAGATGA------TAAAACCAGATGATGTAATTCATA-A-TAATAA-------AAAATATTT------AGTTCTGTAGAACCGT---TAAAATGCCACTTTTAGATGATTGTAAATATTCAA-TATATTCTCATGTGTGCCTTTAGTGAAAACAATCTACGGG-GATA--ACTC-CAGTG-TTTATAAT
gi|13 : ATATGTTTATTTGACA-TGTCTACT-----------AACT--AGTTTTTGGAAGTAAGATACGCACGAGATCATCAGTGAAATGCTTatacatgatgtagaaaagtcaatactgatctctgtttatatgtttatttgacatgtctactaactagtttttggaagtaagatacgcacgagatcatcagtgaaatgcttaa
gi|14 : tattttccatgaatctatgatatttccattaatatttcctcccatgtttttgttcaatttttctgactgtgtcatgcatgcttcaatattacttcatattttctcacttttagaagaaatgttttttcttactaaagaactggaataggttgtggtttgagtttctgtacatgtagttgattccccatctccagatgataaaaccagatgatgtaattcataataataaaaaatatttagttctgtagaaccgttaaaatgccacttttagatgattgtaaatattcaatatattctcatgtgtgcctttagtgaaaacaatctacggggataactccagtgtttataatatacatgatgtagaaaagtcaatactgatctctgtttAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGATACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCTTTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATCGTATTTT-CTTA---AAGAACTGGAATAAG---TCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTTCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATT-AAATAAATACGATAAAGTAATTGGCTAAAGTAATGCAGGTTCATTTATAGCAGGCCTCTTTTCAACTCTTGGAAaa
gi|15 : ATGATTGGGTTTCT---TT---TG------GG--TT--TTTTTTGTCTTCCGACGC------CAGAGGCAGCCGATGCCATTTATA-----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-------------C-TTAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATAGTAAGTGTGGTTCCCCG-ATCTACCAATAAACA--------ATTTTTATTGGTA-TATGTCAGGGAACCAAAC--TATGTTTTACATAGCAGTTAC--TGCC---TTA-GATTTGTTTATTTCACGGTGTCTACTTCCATTGTGAAAACCCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAACTGCT
gi|16 : GGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTATTATTG-
gi|16 : CACGGTGTCTAATTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCACCAATGAAATGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacggtgtctaattcctttgtgaaaaccccggtctttggaaatacgatacccacaagatcaccaatgaaatgc
gi|17 : ggcctctttaaaacacttggaaatactcaacatgttcccatgtgcatctcagtgacaatgatctacgggaaataactattattgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCATGTGTTTTTTGTTCA-TTTTTTGTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAA
gi|18 : AAACGAAAA---TTGAA---AGAG-------TATTTTCAG--A--TCAGCTTT---------TGGCCAAA---TGC--TTAT-TTTACTCCCTTAAT
gi|18 : TTCAGATCAGCTTTTGGCCAAATGCTTA-TTTTACTCCCTTA-ATTAAAATACAATGATTAAAATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TGTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTtaaaatacaatgattaaaatggaaattgaaagagtattttcaaaatttacctttacttgtgaccagacactgttaatgtttgctttaatacagatttgaggt
gi|19 : aaacgaaaattgaaagagtattAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCTGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCC-TGT
gi|2 : ATGCTTA-TTTGACTTTCTAA-ATTAAAATGCAATGCTTAAAATCGAAA---TTGAA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGTT---TTAATACAGATTTGAGGTTGTCTTCAATTTTATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCATCCCGCGTGTTTTTTGTTTATTTTTT-GTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCT---TG---TG------T---AT--GTTTTTGTCTTCTGACGC------CAGAAGCAGAAGATGCCATTTATA-----ATAAATACGATAAAGTAATCGGCTAA-GTAGTGCAGGTTCGTTTATAGCAAGCCTCTTTAAAAAAATTGGAAATACTCAA-CATG-------------C-TCAGTGACAATGATCTACGGGAAATA--ACTCTTATTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNT--ATTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCGCGGTGTCTACTTCCATTGTGAAAAACCCGGTTTTTGGAAATACGATACGTACAAGATCGCCAATGAAATGCT
gi|20 : CTCTAGATAAGGTTTTGACTGAATGAATA-TTTTAC-CCCTGATATTAAAAT-TAGTGCTGAAAATTAAAACTTCTGAAGTCAGAA-------TAT
gi|21 : AATGGAAA---CTGAA---AGAG-------TATTTTCgtattggttatgtttcaaaacaaataataagacaaaaccactgatttaaaatgtctgtacttcaacac
gi|21 : GATCAGTTATTGGCCATATGCTTA-TTGTACGCCCTAA-ATT-AAATGCAATGCTTAAAATGGA------------------------CATTTTCAA--AACTTACCTCTATT----TGCAAGTAG--ACTGTCATAATGtgatcagttattggccatatgcttattgtacgccctaaattaaatgcaatgcttaaaatggacattttcaaaacttacctctatttgcaagtagactgtcataatg
gi|22 : aatggaaactgaaagagtattttctTTTACATAGCAGTTGC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGACTGCCAATGAAATGCTT
gi|23 : ATA-CAGTTAT--CTCAC--ATAAGTTTTGTTTGTTTCATGGTGTCTAATTCCAATGTGCAAAATCTGGTCCTGAGAAACATGACACGCACAAGATAACAATTGAATTGTTTa
gi|24 : gCTCCAGATAAGCTTTTGGCCCAATGCTTA-TTTTACCCCCTAA-AATAAAATTCAATGCTTAAAATGGAAA---CTGAA---AGAG-------TATTTTC
gi|25 : -TTTTACTCCCTTA-ATTTAAGTACAATACTTAAAATGGAAA---TTAAA---AAAAACACAATTATTTTCCATGAATCTAtgatcagttattgg
gi|26 : TGCTCCAGAT-AGCTTTTAGCCAAATGCTTATTTTTTCTCCCTAA-ATTTAATTGCAATGCTTAAA
gi|27 : TGATTCCCTG-TTCTTACAATAAATAGTTTCCCAATTT--ATCGGTAGTTGGTCAGGAAACCAGAC--T--g
gi|28 : cTAGTCTGGTTCCCTG-CCCTACCGATGAATAGT-------TTTATAT-GGT--TATGACAGGGAACCAGAC--T--
gi|29 : aTACTCAAATATGTTTCCATGTGCTCC-TTGGTGACAAACATTTAAGGGAAATA--ACTC
gi|3 : AA---AGAG-------TATTTTCAA--AATTTACCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTG------CCTTCAATTCCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTCTATTGACCTTGCCACCCGTGTGTTTTTTGTTCATTTTTT-GTGACTTCGTAATATATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGATTAAGTTAGCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCAACGC------CAGAAGCAGACGATGCCATTTATA-----ATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTATGGGAAATA--ACTATTATTGNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNNNNNNNNGTAACAATTCACTGTTG-CGTTAGTTTATTTCACGGTGTCTACTTCCTTTGTGAAAACCCCGGTCTTTGGAAATACGATACCCACAAGATCGCCAATGAAATGCTgata
gi|30 : TGCTCCAGGTAATTTTTTAGCCAAAAAATTA-TTTTAC
gi|4 : AATGGAAA---TTGAA---AGAG-------TATTTTCAA--AATATACCTTTACT----TCTGACCAGACATTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGGGAATTTAACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGTTTTTTGTTAATTTTT--GTGACTTCATAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTT--CTTA---AAGAACTGGAATAAGTTA--GAATAATGATTGGGTTTCTTTTGT---TG------T---TG--TTTTTTGTCTTCCGACGC------CAGAAGCAGACGATGCCATTTATA-----ATAAATATGATAAAGTAATCGGCTAAAGTCATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAATTACTCA---------CCATG-----C-TCAGTGACAATGATCTACGGGAAATA--NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNTA--T--GCTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACTCCGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTcacgaaaat
gi|5 : GAA---AGAG-------TATTTTCAA--AATTTATCTTTACT----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTTAATTTCATTTATTATCAGCCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTG-TTTTT-CTTA---AAGAATTGGAATAAGTTA--AAATAATGATTGTTTTTTT---TT---TGTTTGTTT---TT--TTTTTTGTCTTCTGACGC------CAGAAGCAGACGATGCCATTTAT-----AATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTAAAACACTTGGAAATACTCAA-CATG-----A---------TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--N--NNNNNNCATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCTGGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAAT
gi|6 : TTTACT----TCTGACCAGACAATGT--TAATGTTTGCT---TTAATACAGATCTGAGGTTGCTTTCAATTTCATT-ATTATCAACCATGGGAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCATGTGCTTTTTGTTTATTTT-TTGTGACTTCGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTT-CTTA---AAGAACTCGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TG------T---TT--TTTTCCGTCTTCCGACGC------TAGAAGCAGACAATGCCATTTATATT-AAATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCATC-TCAGTGACAATGATCTACGGGAAATA--ACTCTTACTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTAC--TTCCC--TTA-GATTTGTTTATTTCACGGTATCTACTTCCGTTGTAAAAACCCCTGTCTTTGGAAATACGATACGCACAAGATCGCCAATGAAATGCTT
gi|7 : --TAATGTTTGCT---TTAATATAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCGATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTAGTAATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGT-----T---TT--TTTTCCGTCTTCTGACGT------CAGAAGCAGACAATGTCATTTATATT-AAATAAATATGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACTTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATANNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--T--GTTTTCCATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGTGTCTACTTCCGTTGTGAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGCTTg
gi|8 : --TAATGTTTGCT---TTAATACAGATTTGAGGTTGCCTTCAATTTCATTTATTATCAGCCATGGGAACTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTGCCTCCCGTGTGTTTTTTGTTTATTTTTTTGTGACTTCGTTATACATGCATCAATA---------A----CTCACTTTTGAGAGTATTGTTTTTTACTTA---AAGAACTGGAATAAGTTATCAGATAATGATTGGGTTTCT---GT---TGC-----T---TT--TTTTCCGTCTTCCGACGT------CAGAAGCAGACAATGTCATTTATATT-AGATAAATACGATAAAGTAATCGGCTAAAGTAATGCAGGTTCGTTTATAGCAGGCCTCTTTTAAACACCTGGAAATACTCAA-CATGTTCCCATGTGCGTC-TCAGTGACAATGATCTACGGGAAATA--ACTCCTATTG-TATATANNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNTAT--GTTTTACATAGCAGTTGC--TTCAC--TTA-GATTTGTTTATTTCACGGCGTCTACTTCCATTGTTAAAACCCCGGTCTTTGGAAATACGATACACACAAGATTGCCAATGAAATGTTTa
gi|9 : T----TCTGACCAGACACTGT--TAATGTTTGCT---TTAATACAGATTTGAGGTTGTCTTCAATTTCATTTATTATCAGCCATGCCAATTTTACTTTCCATGATTCAATGGTATTTGTATTGACCTTTCCTCCCGTGTGTTTTTTGTTTA-TTTTTTGTGACTTCGTAATACATGCATCAGTA---------A----CTCACTTTTGAAAGTATTG-TTTTT-CTTA---AAGAACTGGAATAAGTTA--AAATAATGATTGGGTTTCT---TT---TG------TTTGTT--TTTTTTGTCTTCTGACGCCAGAAGCAGAAGCAGACGATGCCATTTAT-----AATAAATACGATAAAGTAATCGGCTAAAGTAAAGCAGGTTCGTCTATAGCAGGCCTCTTTAAAACACTTGCAAATACTCAA-CATG-------------C-TCAGTGACAATGATCAACGGGAAATA--ACTCTTATTG-TATA----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNN--T--CTTTTACATAGAAGTTAC--TTCCC--TTA-GATTTGTTTATTTCATGGTGTCTACTTCTGTTGTGAAAACCCTGGTCTTTGGAAATACAATACGCACAAGATCGCCAACGAAATGCTa