lowQualScore : 1 222222 3333333 11 1 22 1 11 1
lowQualScore : 5 000000 2 66 4444444 3 00 6 6 0 6 22 1 3 0 88 11 7
lowQualScore : . ...... . .. ....... . .. . . . . .. . . . .. .. .
lowQualScore : 0 111111 5 99 2222222 5 00 0 0 5 7 77 0 3 7 77 77 0
consensus : GTTGGAAAGCA----TCTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATC---A---TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAANAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAATTGGGNCCTCC-TTGGTCGAGTGGTCNAAGGCGCCGTCGTCCAATGAC
Reference ( gi|5 ) : GTTGCAAAGCA----ACTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATC---C---TTATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATGGAATTACATTATTCCATTTTTCACTGTTTTATCAATAACTTGGCTCCTTC-TTGGTCGAGTGGTCCCAGGCACTGCTGTCCATTGAC
gi|10 : GTTGGAAAGCA----TCTATCCCATTAACAAAGACTAGTAT--AAACAAACTATATC---A---TCATTGTTTCAGTGATTTTCTTTTCAGTTCAATTCAACAGACTTACATTATTCCATTT
gi|14 : GTTGGAAAGCA----TATATCCCATTTACAAAGACTAGTAT--AAACAAACTATGTC---A---TCATAGTTTCAATGATCTTCTTTTCAGT
gi|7 : ctcgacaGTTGGAAAGCA----TCTATCCCATTTGCAAAGACTAGTAT--AAACAAACTATAAA---A---TCATAGTTTTAATGATCTTCTTTTCAG
gi|9 : tgtccttatttgacactcaattgtctgactcgacactcgacaGTTAGAAAGCATATAATTATCCCATTTACAAAGAATAGTAT--AAACATACTTTATC---A---TTATAGTTTCAATGATCTTTTT
gi|16 : gttgttactcgatactcagtttgcttactcgacaGTTGGAAAGCA----TATATTCCATTTACAAAGACTAGTAT--AAACAAA
gi|15 : gtccttacttgacactcaattgtcttactcgacactcgacaGTTGGAAAGCA----TCTATCCCATTTACAAAGACTAATAC--ACACAAA
gi|2 : gtctttacttttgatactcagttttcttactcgacactcgaca----ATTATCTCATTTACAAAGA--AGTGTTTAAACAAACTATATTAATCGTATCATAGTTTTAAT----TCCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCAGTAAATTGGGTCCTCC-TTTATCAAGTGGTCTAATGCACTGTCGTC
gi|4 : gtaaactcatcagtgacttgaactaaaattaacactaatgttcacattttcattgatttgtactagtaaagaatgttaccacagtttcagtgaattgctttaatcacaattatattcatttgtacaagcaactttttaaactgt----ATTATTCCATTTACAAAGAATTGTAT--AAACAAATTATATT---A---TCATAGTTTCAGTGATCTTCTTTTCAGATCAATTCAAGAGAATTCCATTATTCCATTTtgatga
gi|6 : attttcacatttttattgatattaccatagtttcattggttttataacattttaattcatttgtacaatcaaatattcaaactgtTATTACTAAAATGGGGTCTTCGTTGGTCGAGTGGTCAAAGGCGCCGTT
gi|21 : agAACTTTGGACCTCC-TTGGTTAAGTGATCCAAGGCACTGCCGTTCAATGACctaagatcacttaccggtcaaaaaactgtatgtgggaaggacggagtttcttctcggactcatcctgagat
11 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTAAAAAACACAATGAACTCAATTGAAGATTCCACCTGTCAGCAGAGTTATAGGTAGAATCATATTAAATAACAACAAGTTTTTAAACACGATCGACAATATATCACTAATTTAAACGGTCATCCGTGGCCGAGTGGTCTAAGGCGTCGTCTCAAGTTCACTTACCTCCCATCGCTTAGGTCGTAGGTTCGAGTGCATCTTGCTCCAAAAACTGTATGTGAGAAAGTTTGCCAGTTTTTTCGGAAGGACGATGGTTCTTCTTAGATTTATTCTGAGGTCTTCCTCCACCAATTAAACTGGATATGCCATATATAACAGTAAATGTGTTGAAAATTGCGTTAAATCCCATTAAAAATCGCTAATTCAGGGGCTTGTAGAAACAGTTAAGTTATCAGTGACTTGACCCAAAAAAAACAGAAATTATATTTTCACATAATTTTCATTGATTTGTACTAGTAAAGTGTACTACCATGGTTTCAGTG
Unaligned ( gi|3 ): TAATGATCTAAAGCGCCACCCCAGTGACAATATCATTTACTTATCACCCTTAAGGTAATGGGTGCGAGACCAGCTCTGTCTAAAATAAATTATCTAAAATAAAAATTCTGGACACATACAAAACACAATAGTTCTCCTTAGATTTAGTATAAGCCTTTCCTACATCAATGAAGACGGACACCTTGTGTAGCCTTTAATGTGTTATAA
Unaligned ( gi|8 ): TTTTCCAATGACAATTGCAATATCTTTTCAGATTTATTCTGCTTTTTTACTCCTCACCATCATAACCCGATGCTATATATTATAACAGCCAAGTGTTGAAATTACGTTAAAC
Unaligned ( gi|11 ): TTCAATCGTATCTTGGTCCAAAACCTGTGGACGTGATAAGAAAAAGTTGGCCAGTTTCTTGCACAAAATATTTGTTCTGCGTTTTTTCTTACCCATAGAACTGGATA
Unaligned ( gi|12 ): TATCAATTAACAAGGAATCCTACATTACAGAAAATTATCTCCAAATCTCAACAATTGTCCTACATGACTGATCGGTCTAAGGTGTCATCTCAAGGTCACTCA
Unaligned ( gi|13 ): TTAAACTTATTCCAAGGTCTTCCCTCACAAATTGAACTCATACATGTACATGTCGTCAATCTATATAAAATTACGTGTTGAAAATGATTTGAGTCCTTTTAA
Unaligned ( gi|17 ): AGGTCTTCTTCAGCAAAAAACTTAAACTTGATATGCCATTTATAACATGTCCTTTGTTAGCGATAAACCCCAATAAAA
Unaligned ( gi|18 ): TTACTCTGAAGGATCCTCTGTCAACAATTAAATGGCTGCCATATATAACGAAAATTGCGTTAAACCACATT
Unaligned ( gi|19 ): TCTTAATCCAACAATAAAAATAAACTGGATGCTATATATAACATTTAATGTATTGAAAAGTGTATTAAATC
Unaligned ( gi|20 ): ACTGACTTCATCATTTACTTATCACTGCATCAGTCATTGGTTCAAGACCAGCTTTGTCCAAA
Unaligned ( gi|22 ): TATAACATTTAATGTGTTGAAAATTGCATTAAATCGAATTCCATTAAAAA
Alignments
lowQualScore : 1111 111111 111
lowQualScore : 2222 1 66 666666 1 1 5 444 1 8 1 3
lowQualScore : .... . .. ...... . . . ... . . . .
lowQualScore : 1111 1 11 444444 0 0 8 000 0 0 0 2
consensus : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAANTTG---GGTCCTCC-TTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
Reference ( family-2268 ) : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAANAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAATTG---GGNCCTCC-TTGGTCGAGTGGTCNAAGGCGCCGTCGTCCAATGAC
gi|1 : TATCACTAATTTAAACGGTCATCC-GTGGCCGAGTGGTCTAAGGCGTCGTC
gi|10 : ttaaaaaacacaatgaactcaattgaagattccacctgtcagcagagttataggtagaatcatattaaataacaacaagtttttaaacacgatcgacaataGTTGGAAAGCAT----CTATCCCATTAACAAAGACTAGTAT--AAACAAACTATATCA------TCATTGTTTCAGTGATTTTCTTTTCAGTTCAATTCAACAGACTTACATTATTCCATTTtcaagttcacttacctcccatcgcttaggtcgtaggttcgagtgcatcttgctccaaaaactgtatgtgagaaagtttgccagttttttcggaaggacgatggttcttcttagatttattctgaggtcttcctccaccaattaaactggatatgccatatataacagtaaatgtgttgaaaattgcgttaaatcccattaaaaatcgctaattcaggggcttgtagaaacagttaagttatcagtgacttgacccaaaaaaaacagaaattatattttcacataattttcattgatttgtactagtaaagtgtactaccatggtttcagtg
gi|14 : GTTGGAAAGCAT----ATATCCCATTTACAAAGACTAGTAT--AAACAAACTATGTCA------TCATAGTTTCAATGATCTTCTTTTCAGT
gi|15 : ctcgacaGTTGGAAAGCAT----CTATCCCATTTACAAAGACTAATAC--ACACAAA
gi|16 : gtctttacttttgatactcagttttcttactcgacactcgacaGTTGGAAAGCAT----ATATTCCATTTACAAAGACTAGTAT--AAACAAA
gi|2 : gtccttacttgacactcaattgtcttactcgacactcgacaTATCTCATTTACAAAGA--AGTGTTTAAACAAACTATATTAATCGTATCATAGTTTTAAT----TCCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCAGTAAATTG---GGTCCTCC-TTTATCAAGTGGTCTAATGCACTGTCGTCTGATGA
gi|21 : gtaaactcatcagtgacttgaactaaaattaacactaatgttcacattttcattgatttgtactagtaaagaatgttaccacagtttcagtgaattgctttaatcacaattatattcatttgtacaagcaactttttaaactgtatAACTTT---GGACCTCC-TTGGTTAAGTGATCCAAGGCACTGCCGTTCAATGAC
gi|4 : TATTCCATTTACAAAGAATTGTAT--AAACAAATTATATTA------TCATAGTTTCAGTGATCTTCTTTTCAGATCAATTCAAGAGAATTCCATTATTCCATTTc
gi|5 : attttcacatttttattgatattaccatagtttcattggttttataacattttaattcatttgtacaatcaaatattcaaactgtatGTTGCAAAGCAA----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCC------TTATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATGGAATTACATTATTCCATTTTTCACTGTTTTATCAATAACTTG---GCTCCTTC-TTGGTCGAGTGGTCCCAGGCACTGCTGTCCATTGAC
gi|6 : TATTACTAAAATG---GGGTCTTCGTTGGTCGAGTGGTCAAAGGCGCCGT--TCTAA
gi|7 : agGTTGGAAAGCAT----CTATCCCATTTGCAAAGACTAGTAT--AAACAAACTATAAAA------TCATAGTTTTAATGATCTTCTTTTCAGgatcacttaccggtcaaaaaactgtatgtgggaaggacggagtttcttctcggactcatcctgagat
gi|9 : tgtccttatttgacactcaattgtctgactcgacactcgacaGTTAGAAAGCATATAATTATCCCATTTACAAAGAATAGTAT--AAACATACTTTATCA------TTATAGTTTCAATGATCTTTTT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGATCTAAAGCGCCACCCCAGTGACAATATCATTTACTTATCACCCTTAAGGTAATGGGTGCGAGACCAGCTCTGTCTAAAATAAATTATCTAAAATAAAAATTCTGGACACATACAAAACACAATAGTTCTCCTTAGATTTAGTATAAGCCTTTCCTACATCAATGAAGACGGACACCTTGTGTAGCCTTTAATGTGTTATAA
Unaligned ( gi|8 ): TTTTCCAATGACAATTGCAATATCTTTTCAGATTTATTCTGCTTTTTTACTCCTCACCATCATAACCCGATGCTATATATTATAACAGCCAAGTGTTGAAATTACGTTAAAC
Unaligned ( gi|11 ): TTCAATCGTATCTTGGTCCAAAACCTGTGGACGTGATAAGAAAAAGTTGGCCAGTTTCTTGCACAAAATATTTGTTCTGCGTTTTTTCTTACCCATAGAACTGGATA
Unaligned ( gi|12 ): TATCAATTAACAAGGAATCCTACATTACAGAAAATTATCTCCAAATCTCAACAATTGTCCTACATGACTGATCGGTCTAAGGTGTCATCTCAAGGTCACTCA
Unaligned ( gi|13 ): TTAAACTTATTCCAAGGTCTTCCCTCACAAATTGAACTCATACATGTACATGTCGTCAATCTATATAAAATTACGTGTTGAAAATGATTTGAGTCCTTTTAA
Unaligned ( gi|17 ): AGGTCTTCTTCAGCAAAAAACTTAAACTTGATATGCCATTTATAACATGTCCTTTGTTAGCGATAAACCCCAATAAAA
Unaligned ( gi|18 ): TTACTCTGAAGGATCCTCTGTCAACAATTAAATGGCTGCCATATATAACGAAAATTGCGTTAAACCACATT
Unaligned ( gi|19 ): TCTTAATCCAACAATAAAAATAAACTGGATGCTATATATAACATTTAATGTATTGAAAAGTGTATTAAATC
Unaligned ( gi|20 ): ACTGACTTCATCATTTACTTATCACTGCATCAGTCATTGGTTCAAGACCAGCTTTGTCCAAA
Unaligned ( gi|22 ): TATAACATTTAATGTGTTGAAAATTGCATTAAATCGAATTCCATTAAAAA
Alignments
lowQualScore : 1111 111111 111
lowQualScore : 2222 1 66 666666 0 1 99 444 1 3
lowQualScore : .... . .. ...... . . .. ... . .
lowQualScore : 1111 1 11 444444 8 0 00 000 4 2
consensus : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
Reference ( family-2268 ) : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
gi|1 : TATCACTAAT-TTAAACGGTCATCCGTGGCCGAGTGGTCTAAGGCGTCGTC
gi|10 : ttaaaaaacacaatgaactcaattgaagattccacctgtcagcagagttataggtagaatcatattaaataacaacaagtttttaaacacgatcgacaataGTTGGAAAGCAT----CTATCCCATTAACAAAGACTAGTAT--AAACAAACTATATCA------TCATTGTTTCAGTGATTTTCTTTTCAGTTCAATTCAACAGACTTACATTATTCCATTTtcaagttcacttacctcccatcgcttaggtcgtaggttcgagtgcatcttgctccaaaaactgtatgtgagaaagtttgccagttttttcggaaggacgatggttcttcttagatttattctgaggtcttcctccaccaattaaactggatatgccatatataacagtaaatgtgttgaaaattgcgttaaatcccattaaaaatcgctaattcaggggcttgtagaaacagttaagttatcagtgacttgacccaaaaaaaacagaaattatattttcacataattttcattgatttgtactagtaaagtgtactaccatggtttcagtg
gi|14 : GTTGGAAAGCAT----ATATCCCATTTACAAAGACTAGTAT--AAACAAACTATGTCA------TCATAGTTTCAATGATCTTCTTTTCAGT
gi|15 : ctcgacaGTTGGAAAGCAT----CTATCCCATTTACAAAGACTAATAC--ACACAAA
gi|16 : gtctttacttttgatactcagttttcttactcgacactcgacaGTTGGAAAGCAT----ATATTCCATTTACAAAGACTAGTAT--AAACAAA
gi|2 : gtccttacttgacactcaattgtcttactcgacactcgacaTATCTCATTTACAAAGA--AGTGTTTAAACAAACTATATTAATCGTATCATAGTTTTAAT----TCCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCAGTAAA-TTG---GGTCCTCCTTTATCAAGTGGTCTAATGCACTGTCGTCTGATGA
gi|21 : gtaaactcatcagtgacttgaactaaaattaacactaatgttcacattttcattgatttgtactagtaaagaatgttaccacagtttcagtgaattgctttaatcacaattatattcatttgtacaagcaactttttaaactgtatAAC-TTT---GGACCTCCTTGGTTAAGTGATCCAAGGCACTGCCGTTCAATGAC
gi|4 : TATTCCATTTACAAAGAATTGTAT--AAACAAATTATATTA------TCATAGTTTCAGTGATCTTCTTTTCAGATCAATTCAAGAGAATTCCATTATTCCATTTc
gi|5 : attttcacatttttattgatattaccatagtttcattggttttataacattttaattcatttgtacaatcaaatattcaaactgtatGTTGCAAAGCAA----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCC------TTATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATGGAATTACATTATTCCATTTTTCACTGTTTTATCAATAAC-TTG---GCTCCTTCTTGGTCGAGTGGTCCCAGGCACTGCTGTCCATTGAC
gi|6 : TATTACTAAAATGG---GGTCTTCGTTGGTCGAGTGGTCAAAGGCGCCGT--TCTAA
gi|7 : agGTTGGAAAGCAT----CTATCCCATTTGCAAAGACTAGTAT--AAACAAACTATAAAA------TCATAGTTTTAATGATCTTCTTTTCAGgatcacttaccggtcaaaaaactgtatgtgggaaggacggagtttcttctcggactcatcctgagat
gi|9 : tgtccttatttgacactcaattgtctgactcgacactcgacaGTTAGAAAGCATATAATTATCCCATTTACAAAGAATAGTAT--AAACATACTTTATCA------TTATAGTTTCAATGATCTTTTT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGATCTAAAGCGCCACCCCAGTGACAATATCATTTACTTATCACCCTTAAGGTAATGGGTGCGAGACCAGCTCTGTCTAAAATAAATTATCTAAAATAAAAATTCTGGACACATACAAAACACAATAGTTCTCCTTAGATTTAGTATAAGCCTTTCCTACATCAATGAAGACGGACACCTTGTGTAGCCTTTAATGTGTTATAA
Unaligned ( gi|8 ): TTTTCCAATGACAATTGCAATATCTTTTCAGATTTATTCTGCTTTTTTACTCCTCACCATCATAACCCGATGCTATATATTATAACAGCCAAGTGTTGAAATTACGTTAAAC
Unaligned ( gi|11 ): TTCAATCGTATCTTGGTCCAAAACCTGTGGACGTGATAAGAAAAAGTTGGCCAGTTTCTTGCACAAAATATTTGTTCTGCGTTTTTTCTTACCCATAGAACTGGATA
Unaligned ( gi|12 ): TATCAATTAACAAGGAATCCTACATTACAGAAAATTATCTCCAAATCTCAACAATTGTCCTACATGACTGATCGGTCTAAGGTGTCATCTCAAGGTCACTCA
Unaligned ( gi|13 ): TTAAACTTATTCCAAGGTCTTCCCTCACAAATTGAACTCATACATGTACATGTCGTCAATCTATATAAAATTACGTGTTGAAAATGATTTGAGTCCTTTTAA
Unaligned ( gi|17 ): AGGTCTTCTTCAGCAAAAAACTTAAACTTGATATGCCATTTATAACATGTCCTTTGTTAGCGATAAACCCCAATAAAA
Unaligned ( gi|18 ): TTACTCTGAAGGATCCTCTGTCAACAATTAAATGGCTGCCATATATAACGAAAATTGCGTTAAACCACATT
Unaligned ( gi|19 ): TCTTAATCCAACAATAAAAATAAACTGGATGCTATATATAACATTTAATGTATTGAAAAGTGTATTAAATC
Unaligned ( gi|20 ): ACTGACTTCATCATTTACTTATCACTGCATCAGTCATTGGTTCAAGACCAGCTTTGTCCAAA
Unaligned ( gi|22 ): TATAACATTTAATGTGTTGAAAATTGCATTAAATCGAATTCCATTAAAAA
Alignments
lowQualScore : 1111 111111 111
lowQualScore : 2222 1 66 666666 0 1 99 444 1 3
lowQualScore : .... . .. ...... . . .. ... . .
lowQualScore : 1111 1 11 444444 8 0 00 000 4 2
consensus : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
Reference ( family-2268 ) : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
gi|1 : TATCACTAAT-TTAAACGGTCATCCGTGGCCGAGTGGTCTAAGGCGTCGTC
gi|10 : ttaaaaaacacaatgaactcaattgaagattccacctgtcagcagagttataggtagaatcatattaaataacaacaagtttttaaacacgatcgacaataGTTGGAAAGCAT----CTATCCCATTAACAAAGACTAGTAT--AAACAAACTATATCA------TCATTGTTTCAGTGATTTTCTTTTCAGTTCAATTCAACAGACTTACATTATTCCATTTtcaagttcacttacctcccatcgcttaggtcgtaggttcgagtgcatcttgctccaaaaactgtatgtgagaaagtttgccagttttttcggaaggacgatggttcttcttagatttattctgaggtcttcctccaccaattaaactggatatgccatatataacagtaaatgtgttgaaaattgcgttaaatcccattaaaaatcgctaattcaggggcttgtagaaacagttaagttatcagtgacttgacccaaaaaaaacagaaattatattttcacataattttcattgatttgtactagtaaagtgtactaccatggtttcagtg
gi|14 : GTTGGAAAGCAT----ATATCCCATTTACAAAGACTAGTAT--AAACAAACTATGTCA------TCATAGTTTCAATGATCTTCTTTTCAGT
gi|15 : ctcgacaGTTGGAAAGCAT----CTATCCCATTTACAAAGACTAATAC--ACACAAA
gi|16 : gtctttacttttgatactcagttttcttactcgacactcgacaGTTGGAAAGCAT----ATATTCCATTTACAAAGACTAGTAT--AAACAAA
gi|2 : gtccttacttgacactcaattgtcttactcgacactcgacaTATCTCATTTACAAAGA--AGTGTTTAAACAAACTATATTAATCGTATCATAGTTTTAAT----TCCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCAGTAAA-TTG---GGTCCTCCTTTATCAAGTGGTCTAATGCACTGTCGTCTGATGA
gi|21 : gtaaactcatcagtgacttgaactaaaattaacactaatgttcacattttcattgatttgtactagtaaagaatgttaccacagtttcagtgaattgctttaatcacaattatattcatttgtacaagcaactttttaaactgtatAAC-TTT---GGACCTCCTTGGTTAAGTGATCCAAGGCACTGCCGTTCAATGAC
gi|4 : TATTCCATTTACAAAGAATTGTAT--AAACAAATTATATTA------TCATAGTTTCAGTGATCTTCTTTTCAGATCAATTCAAGAGAATTCCATTATTCCATTTc
gi|5 : attttcacatttttattgatattaccatagtttcattggttttataacattttaattcatttgtacaatcaaatattcaaactgtatGTTGCAAAGCAA----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCC------TTATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATGGAATTACATTATTCCATTTTTCACTGTTTTATCAATAAC-TTG---GCTCCTTCTTGGTCGAGTGGTCCCAGGCACTGCTGTCCATTGAC
gi|6 : TATTACTAAAATGG---GGTCTTCGTTGGTCGAGTGGTCAAAGGCGCCGT--TCTAA
gi|7 : agGTTGGAAAGCAT----CTATCCCATTTGCAAAGACTAGTAT--AAACAAACTATAAAA------TCATAGTTTTAATGATCTTCTTTTCAGgatcacttaccggtcaaaaaactgtatgtgggaaggacggagtttcttctcggactcatcctgagat
gi|9 : tgtccttatttgacactcaattgtctgactcgacactcgacaGTTAGAAAGCATATAATTATCCCATTTACAAAGAATAGTAT--AAACATACTTTATCA------TTATAGTTTCAATGATCTTTTT
blockSeqs : ATAA C TT ATCGTA G AA . T C
blockSeqs : . C . . A A . C C
blockSeqs : . C . . C C . C T
blockSeqs : . A . . C . A .
blockSeqs : . C . .
blockSeqs : . C . .
blockSeqs : A .
blockSeqs : . .
blockSeqCons : ***
originalCons : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
finalCons : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGATCTAAAGCGCCACCCCAGTGACAATATCATTTACTTATCACCCTTAAGGTAATGGGTGCGAGACCAGCTCTGTCTAAAATAAATTATCTAAAATAAAAATTCTGGACACATACAAAACACAATAGTTCTCCTTAGATTTAGTATAAGCCTTTCCTACATCAATGAAGACGGACACCTTGTGTAGCCTTTAATGTGTTATAA
Unaligned ( gi|8 ): TTTTCCAATGACAATTGCAATATCTTTTCAGATTTATTCTGCTTTTTTACTCCTCACCATCATAACCCGATGCTATATATTATAACAGCCAAGTGTTGAAATTACGTTAAAC
Unaligned ( gi|11 ): TTCAATCGTATCTTGGTCCAAAACCTGTGGACGTGATAAGAAAAAGTTGGCCAGTTTCTTGCACAAAATATTTGTTCTGCGTTTTTTCTTACCCATAGAACTGGATA
Unaligned ( gi|12 ): TATCAATTAACAAGGAATCCTACATTACAGAAAATTATCTCCAAATCTCAACAATTGTCCTACATGACTGATCGGTCTAAGGTGTCATCTCAAGGTCACTCA
Unaligned ( gi|13 ): TTAAACTTATTCCAAGGTCTTCCCTCACAAATTGAACTCATACATGTACATGTCGTCAATCTATATAAAATTACGTGTTGAAAATGATTTGAGTCCTTTTAA
Unaligned ( gi|17 ): AGGTCTTCTTCAGCAAAAAACTTAAACTTGATATGCCATTTATAACATGTCCTTTGTTAGCGATAAACCCCAATAAAA
Unaligned ( gi|18 ): TTACTCTGAAGGATCCTCTGTCAACAATTAAATGGCTGCCATATATAACGAAAATTGCGTTAAACCACATT
Unaligned ( gi|19 ): TCTTAATCCAACAATAAAAATAAACTGGATGCTATATATAACATTTAATGTATTGAAAAGTGTATTAAATC
Unaligned ( gi|20 ): ACTGACTTCATCATTTACTTATCACTGCATCAGTCATTGGTTCAAGACCAGCTTTGTCCAAA
Unaligned ( gi|22 ): TATAACATTTAATGTGTTGAAAATTGCATTAAATCGAATTCCATTAAAAA
Alignments
lowQualScore : 1111 111111 111
lowQualScore : 2222 1 66 666666 0 1 99 444 1 3
lowQualScore : .... . .. ...... . . .. ... . .
lowQualScore : 1111 1 11 444444 8 0 00 000 4 2
consensus : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
Reference ( family-2268 ) : GTTGGAAAGCAT----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCA------TCATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCANTAAN-TTG---GGTCCTCCTTGGTCGAGTGGTCCAAGGCGCCGTCGTCCAATGAC
gi|1 : TATCACTAAT-TTAAACGGTCATCCGTGGCCGAGTGGTCTAAGGCGTCGTC
gi|10 : ttaaaaaacacaatgaactcaattgaagattccacctgtcagcagagttataggtagaatcatattaaataacaacaagtttttaaacacgatcgacaataGTTGGAAAGCAT----CTATCCCATTAACAAAGACTAGTAT--AAACAAACTATATCA------TCATTGTTTCAGTGATTTTCTTTTCAGTTCAATTCAACAGACTTACATTATTCCATTTtcaagttcacttacctcccatcgcttaggtcgtaggttcgagtgcatcttgctccaaaaactgtatgtgagaaagtttgccagttttttcggaaggacgatggttcttcttagatttattctgaggtcttcctccaccaattaaactggatatgccatatataacagtaaatgtgttgaaaattgcgttaaatcccattaaaaatcgctaattcaggggcttgtagaaacagttaagttatcagtgacttgacccaaaaaaaacagaaattatattttcacataattttcattgatttgtactagtaaagtgtactaccatggtttcagtg
gi|14 : GTTGGAAAGCAT----ATATCCCATTTACAAAGACTAGTAT--AAACAAACTATGTCA------TCATAGTTTCAATGATCTTCTTTTCAGT
gi|15 : ctcgacaGTTGGAAAGCAT----CTATCCCATTTACAAAGACTAATAC--ACACAAA
gi|16 : gtctttacttttgatactcagttttcttactcgacactcgacaGTTGGAAAGCAT----ATATTCCATTTACAAAGACTAGTAT--AAACAAA
gi|2 : gtccttacttgacactcaattgtcttactcgacactcgacaTATCTCATTTACAAAGA--AGTGTTTAAACAAACTATATTAATCGTATCATAGTTTTAAT----TCCTTTTCAGTTCAATTCAATAGAATTACATTATTCCATTTTCCACTGTTCTATCAGTAAA-TTG---GGTCCTCCTTTATCAAGTGGTCTAATGCACTGTCGTCTGATGA
gi|21 : gtaaactcatcagtgacttgaactaaaattaacactaatgttcacattttcattgatttgtactagtaaagaatgttaccacagtttcagtgaattgctttaatcacaattatattcatttgtacaagcaactttttaaactgtatAAC-TTT---GGACCTCCTTGGTTAAGTGATCCAAGGCACTGCCGTTCAATGAC
gi|4 : TATTCCATTTACAAAGAATTGTAT--AAACAAATTATATTA------TCATAGTTTCAGTGATCTTCTTTTCAGATCAATTCAAGAGAATTCCATTATTCCATTTc
gi|5 : attttcacatttttattgatattaccatagtttcattggttttataacattttaattcatttgtacaatcaaatattcaaactgtatGTTGCAAAGCAA----CTATCCCATTTACAAAGACTAGTAT--AAACAAACTATATCC------TTATAGTTTCAATGATCTTCTTTTCAGTTCAATTCAATGGAATTACATTATTCCATTTTTCACTGTTTTATCAATAAC-TTG---GCTCCTTCTTGGTCGAGTGGTCCCAGGCACTGCTGTCCATTGAC
gi|6 : TATTACTAAAATGG---GGTCTTCGTTGGTCGAGTGGTCAAAGGCGCCGT--TCTAA
gi|7 : agGTTGGAAAGCAT----CTATCCCATTTGCAAAGACTAGTAT--AAACAAACTATAAAA------TCATAGTTTTAATGATCTTCTTTTCAGgatcacttaccggtcaaaaaactgtatgtgggaaggacggagtttcttctcggactcatcctgagat
gi|9 : tgtccttatttgacactcaattgtctgactcgacactcgacaGTTAGAAAGCATATAATTATCCCATTTACAAAGAATAGTAT--AAACATACTTTATCA------TTATAGTTTCAATGATCTTTTT
10 sequences could not be aligned to this reference sequence:
Unaligned ( gi|3 ): TAATGATCTAAAGCGCCACCCCAGTGACAATATCATTTACTTATCACCCTTAAGGTAATGGGTGCGAGACCAGCTCTGTCTAAAATAAATTATCTAAAATAAAAATTCTGGACACATACAAAACACAATAGTTCTCCTTAGATTTAGTATAAGCCTTTCCTACATCAATGAAGACGGACACCTTGTGTAGCCTTTAATGTGTTATAA
Unaligned ( gi|8 ): TTTTCCAATGACAATTGCAATATCTTTTCAGATTTATTCTGCTTTTTTACTCCTCACCATCATAACCCGATGCTATATATTATAACAGCCAAGTGTTGAAATTACGTTAAAC
Unaligned ( gi|11 ): TTCAATCGTATCTTGGTCCAAAACCTGTGGACGTGATAAGAAAAAGTTGGCCAGTTTCTTGCACAAAATATTTGTTCTGCGTTTTTTCTTACCCATAGAACTGGATA
Unaligned ( gi|12 ): TATCAATTAACAAGGAATCCTACATTACAGAAAATTATCTCCAAATCTCAACAATTGTCCTACATGACTGATCGGTCTAAGGTGTCATCTCAAGGTCACTCA
Unaligned ( gi|13 ): TTAAACTTATTCCAAGGTCTTCCCTCACAAATTGAACTCATACATGTACATGTCGTCAATCTATATAAAATTACGTGTTGAAAATGATTTGAGTCCTTTTAA
Unaligned ( gi|17 ): AGGTCTTCTTCAGCAAAAAACTTAAACTTGATATGCCATTTATAACATGTCCTTTGTTAGCGATAAACCCCAATAAAA
Unaligned ( gi|18 ): TTACTCTGAAGGATCCTCTGTCAACAATTAAATGGCTGCCATATATAACGAAAATTGCGTTAAACCACATT
Unaligned ( gi|19 ): TCTTAATCCAACAATAAAAATAAACTGGATGCTATATATAACATTTAATGTATTGAAAAGTGTATTAAATC
Unaligned ( gi|20 ): ACTGACTTCATCATTTACTTATCACTGCATCAGTCATTGGTTCAAGACCAGCTTTGTCCAAA
Unaligned ( gi|22 ): TATAACATTTAATGTGTTGAAAATTGCATTAAATCGAATTCCATTAAAAA