lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444 33333333333333 22222 2222 8888888888888888888888888888888888888888888888888888888888888888888888 22 111 1 11111111 1111111 11111 22222 111 2222222222222 1111111111 1111111111 1 4444444 1 1 111 2222 111 22 222 22 22 1 1 11 1
lowQualScore : 9999999999999999999999999999999999999999999999999999999999999999 1 0 99 99999999999999 6 00000 3333 5 0 4444444444444444444444444444444444444444444444444444444444444444444444 44 222 5 99999999 6666666 22222 88888 888 000 8888888888888 2222222222 0 5555555555 1 9 0 0000000 6 66 3 888 2 333 4 5 0 0 4444 777 4 66 0 5 77 0 000 3 55 1 1 1 0 0 8 0 0 1 0 222 33 11 8 0 0 0 1 1 5 33 33 8 6 7 6 6 6 9 0
lowQualScore : ................................................................ . . .. .............. . ..... .... . . ...................................................................... .. ... . ........ ....... ..... ..... ... ... ............. .......... . .......... . . . ....... . .. . ... . ... . . . . .... ... . .. . . .. . ... . .. . . . . . . . . . . ... .. .. . . . . . . . .. .. . . . . . . . .
lowQualScore : 8888888888888888888888888888888888888888888888888888888888888888 7 8 22 22222222222222 7 77777 3333 7 7 3333333333333333333333333333333333333333333333333333333333333333333333 44 111 1 99999999 2222222 55555 11111 222 000 9999999999999 9999999999 9 6666666666 8 4 2 0000000 4 99 8 888 0 111 1 0 8 2 1111 888 4 99 4 0 99 6 999 5 88 0 0 0 8 8 0 8 8 0 6 000 00 00 0 8 6 6 4 0 0 88 22 0 7 0 7 7 0 0 7
consensus : NAATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCTTNNNNNNN----------A----------CAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA---AAAAGGAAAAA--GG-AGACGATT---T----------------NNNNNNNNNNNNNNNNNGATATGAGAGAGAGAGAGAGANNGGGAATTA-TTATGTAAGTAC-AGTGCTCGATTT--CGGAGTCGGAAAA-A------CAAAG-------TATTGT-----GGGA----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTAAAGTTGACATACTAGAAGCGA-T-A-G-ACGCGGC--AATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTNGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTA---TTT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAAGAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGTA-TGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTA-AGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAATCTTCAG
Reference ( gi|1 ) : AAATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------A----------CAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA---AAAAGGAAAAA--TG-AGATGATT---T----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTT-TTATGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAA-A------CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTAAAGTTAACACACTAGAAGCGA-T-A-GTACGCAGC--AATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTA---ATT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAAGAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGTA-TGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTA-AGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|2 : AATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------AATCGCACGCACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGAGAGAG-AGAGAAAAAAGTAAAAA--AG-ATATGATT---T----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------TTATGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAA-A------CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA
gi|5 : taacatagagttcagttagctAATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCTT------------------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGAG--AAAAGG--------G-AGATTATT---T----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------TTA-TTGTGGTAGTA--AGTGCTCGATTT--CAGAGTC-GAAAA-AAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTAA---GT-----TC------AG---T------------------------TTAAACTT-----------------T-A-G-ACGCAGC--AATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATAC--TT-----TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAAGAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGTA-TGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTA-AGATCTAAATgttggcatactacaagcgactagacgcggtaataaacccttgaaccgatctgaagatatgcacattttcctcgtgagataagtttgcacttccacaaagcattaactattaagtaataatattgttattttgtagagatgtaaacaattgttgacgttgaacagtatagttattacaaagaaaaaatgatacgcattttcatatgcattttcacaaatacagctcggttcatttacaatattaactctaaacaaatcataagtaagtggtctgcattgatactttaagcgtgcaatgtataatatttaattttcttttgccgtgattgtaatgatcatgtcatgaaattaacgagtaattatcatttgttatagctgttttgaactgtgccaatgatggtaaatttttaacattaagatctcaattattccatcttcttatagttggcggcacaaaggatttatttgataatgttaatctgtaatttgctattatataatcctcag
gi|11 : agagttgagttaactATGTTGCCTTTCACAGA
gi|16 : gttgagaacttATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACA----------CAATCGTATTTACAGAC--ACACA--------------TTCAAAcatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGA
gi|4 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaactt----------A----------CAATCGCATT-AC-CACCGACACA--------------TTCAAAAGATAGAG-AGA---AAAAGGAAAAA--GG-A---GAT--------------------------------------GATATGAGAGAGAGAGAGAGAGAGAGAATTG-TTATGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAA-A------CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTTTTGTTCACATACTAGAAGCGATT-A-G-ACGCGGC--AATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTA---TTT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAAGAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGTA-TGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTA-AGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAGc
gi|11 : c----------A----------CAATCGCACTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA--------GAAAA----G-AGATGATT---TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTA-TTATGTAAGTA--AGTGCTCGATTT--a
gi|3 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaCGCACGCACACAC--ACACA--------------CACACACGAGAGTGTAGA---A---GAAAAAG--TGGAGACTATN---N----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAG-------TTATGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAA-T------CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTAAATTTGACAAACTAAAACCAA-T----TA-GAAGCTCAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTA---TTT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAAGAAA----AAAAAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTAAAC-------------------TGCATTGATACCTTAAGCGTGTA-TGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTT---ATTATATAGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAGc
gi|7 : atgttgcctttcacaaacacacgcgcgcacaAGATATAG-AGA---AAAAGGAAAAAAAGG-AGATGATA---N----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTA-TTATGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA------CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATAAAGTGCACATACTAGAAGCGATT-A-G-ACGCGGC--AATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|6 : AAAAA--GG-AGACAATTGNNN----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTTATGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAA-C------CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTAAAGTTGACAGACTAAATG----------ACGCTGC--AATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTA---TTT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAA-----G----CGTTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGTA-TAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATG-AGATGTAAATTAGTCCAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|8 : -TTATGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAA-T------CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATAAAGTTGACATACTAGAAGCGA-T-AAGT-CGTTGC--AATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTA---TTT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAA
gi|9 : tgTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAA-A------CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTAAAGTTGAccaaaaaatgaactttcgcggccgtaccatgattgca
gi|2 : atgatgccattcacatacacacgcacgcccgcacgtacatacatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagTAAAGTTGGCATACTACAAGCGACT-A-G-ACGCGGT--AATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTA---TTT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAA----AGAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTA-AGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGttgactaacacaatgaatctga
gi|12 : taacatagagttcagttagctaatgttgcctttcacagacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcgcacgcacaattgtatttnnnnnnnnnnnnnnnnnnnnnnnnnttcaaaagagagagagagaaaaaagtaaaaaagatatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgtaagtaagtgctcgatttcggagttggaaaaacaaagtattgtgggtggggAAAGTTGACATACACGAAGCGA-TCA-G-ATGCTGC--AATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCAC-TTCAGAATTGCAACAACTCTAAAGTAATAATACCGTTA---TTT---TGTAGAG-AT
gi|20 : TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAAGTAAACATTATGTGCATttgctga
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|13 ): ATCATTCCCTAAATTTGTATTTATTTTTCCAAAATGTTCCAAAGAGGTTTAACATATTTTATAACATAATATGTACATACAGTTGAGTTGACTAGTGTTACCTTTCACACACGTGCACTGAAGCACATACGC
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|19 ): AATATATTGTATACCATATACATTGTGTAACCAACGCTAAGTTGACTAATGTTGCCTTTCACACACACACACGCACAC
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000000000000000000000 33333333333333 1111 222222222 888888888888888888888888888888888888888888888888888888888888 33333 1111111 11111 1111111 11111 33333 333333333333333333 11111111 111
lowQualScore : 8888 33333333333333333333333333333333333333333333333333333333333333333333333333333 1 77 33333333333333 5 0000 3 000000000 66 88 888888888888888888888888888888888888888888888888888888888888 2 99999 3333333 55 55555 4444444 11111 77777 4 4 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 7 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 2 2 2 0
lowQualScore : .... ............................................................................. . .. .............. . .... . ......... .. .. ............................................................ . ..... ....... .. ..... ....... ..... ..... . . .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 5555 22222222222222222222222222222222222222222222222222222222222222222222222222222 4 99 66666666666666 7 1111 0 000000000 99 44 888888888888888888888888888888888888888888888888888888888888 9 00000 0000000 55 66666 4444444 11111 66666 4 4 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 4 888 0 4 000 000 0 11 4 99 0 7 2 7 3 7 5 5 5 2
consensus : NAATGTTGCCTTTCACAG----ACACA------------------CGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGNACGN----------ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCNGATANGAGAGAG-AGAG-AGAGANT---------GGGAA----TTGTTATGTAAGTA---C-AG-------TGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAG----ACATA------------------CATACACTCAAGCACGTACGTACGCAGGCCT----------TNNNNNNN----------ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA---AAAAGGAAA---------AA--GGAGACGATTTNNNNNNNNNNNNNNNNNGATATGAGAGAG-AGAG-AGAGANN---------GGGAA----TTATTATGTAAGTA---C-AG-------TGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGGA----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCGGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTNGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAATCTTCAG
gi|1 : AATGTTGCCTTTCACAG----ANNNN------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNN----------ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA---AAAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTATGTAAGTA-----AG-------TGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATACATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNAA----------ACAATCGCACTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA---GAAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTATGTAAGTA-----AG-------TGCTCGATTT--C
gi|12 : gttgagaacttA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTC--------ACACA------------------CGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAG----ACATA------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAG----AC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACAC----ACACA------------------CACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAG----ACATA------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACGC----------ACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGAGAGAG-AGAGAAAAAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTATGTAAGTA-----AG-------TGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAA----ACACA------------------C----------GCGCGCAC--ACGCA--------------------------------------CGCAC--ACACAC--ACACA----------------CACACGAGAGTGTAGA---AGAA--AAA---------GT--GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTATGCAAATA---CCAG-------TGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------ACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGATAGAG-AGA---AAAAGGAAA---------AA--GGAGA----------------------TGATATGAGAGAG-AGAG-AGAGAGA---------GAGAA----TTGTTATGTTAGTA-----AG-------TACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : cAATGTTGCCTTTCACAG----ACATA------------------CATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAG-AGA--------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTGTGGTAGTA-----AG-------TGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTATGTAAGTA---CCAG-------AACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGATATAG-AGA---AAAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTATGTAAGTA-----AA-------TGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTATGCAAGTA---CCAG-------TGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACAT----ACACA------------------CGCACGCCC--GCACGTACATACATA---CT----------TGAGATCT----------ACAactttcgcggccgtaccatgattgca
gi|9 : ACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAAG---CTAGGATACAAGTAGTGC-AAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAA----CTT-G-GTAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAttgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 888888888888888888888888888888888 33333333333333 1111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 33 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 0 666666666666666666666666666666666 3 77 33333333333333 0000 0000000000000 1 66666666666666666666666666666666666666666666666666666666666 000000000000 77 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 4 444 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . . ................................. . .. .............. .... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 1 6 222222222222222222222222222222222 6 99 66666666666666 1111 1111111111111 4 11111111111111111111111111111111111111111111111111111111111 555555555555 66 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 4 222 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACGC----------ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGA-T-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGNACGN----------ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCNGATANGAGAGAG-AGAG-AGAGANT---------GGGAA----TTGTTA------------TGTAAGTAC-AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGA-T-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNN----------ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGA-T-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaactt----------ACAATCGCACTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---GAAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGA-TCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACGC----------ACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGAGAGAGAGAGAAAAAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGG-T-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACAC----------ACA----------CACAC--ACACA--------------C--------GAGAGTGT---AGAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAA-TTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------ACAATCGCA-TTAC-CACCGACACA--------------TTCAAAAGATAGAGAGA---AAAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATT-A-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : cAATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA--------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT-----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA------T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGATATAGAGA---AAAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGA-TTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGA-T-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : ACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 66666666666666666666666666666666 22222222222222 11111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 22 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 22 66666666666666666666666666666666 0 0 66 99999999999999 5 22222 0000000000000 1 33333333333333333333333333333333333333333333333333333333333 000000000000 22 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . .. ................................ . . .. .............. . ..... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 4 11 00000000000000000000000000000000 4 1 99 44444444444444 0 88888 1111111111111 4 22222222222222222222222222222222222222222222222222222222222 555555555555 00 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNN----------NACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaacttACAATCGCACTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---G-AAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG----------CACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGA-GAGAGAGAGAAA-AAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA----------CACA----------CACAC--ACACA--------------C---------GAGAGTGT---A-GAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------CACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGA-TAGAGAGA---A-AAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGA-TATAGAGA---A-AAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : CACATACACACGCACGCC------------CGCACG----------TACATACATACTTG-AGAT--CTACA--------------TTGATCAGATAAGAGAGA---ATAGAGGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
gi|9 : atgatgccattACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAgagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 88888888888888888888888888888888 33333333333333 1111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 22 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 0 44444444444444444444444444444444 1 77 33333333333333 0000 0000000000000 1 33333333333333333333333333333333333333333333333333333333333 000000000000 22 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . . ................................ . .. .............. .... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 1 6 44444444444444444444444444444444 4 99 66666666666666 1111 1111111111111 4 22222222222222222222222222222222222222222222222222222222222 555555555555 00 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNN----------NACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaacttACAATCGCACTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---GAAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG----------CACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGAGAGAGAGAGAAAAAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA----------CACA----------CACAC--ACACA--------------C--------GAGAGTGT---AGAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------CACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGATAGAGAGA---AAAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA--------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGATATAGAGA---AAAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : ACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 66666666666666666666666666666666 22222222222222 11111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 22 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 22 66666666666666666666666666666666 0 0 66 99999999999999 5 22222 0000000000000 1 33333333333333333333333333333333333333333333333333333333333 000000000000 22 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . .. ................................ . . .. .............. . ..... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 4 11 00000000000000000000000000000000 4 1 99 44444444444444 0 88888 1111111111111 4 22222222222222222222222222222222222222222222222222222222222 555555555555 00 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNN----------NACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaacttACAATCGCACTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---G-AAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG----------CACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGA-GAGAGAGAGAAA-AAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA----------CACA----------CACAC--ACACA--------------C---------GAGAGTGT---A-GAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------CACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGA-TAGAGAGA---A-AAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGA-TATAGAGA---A-AAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : CACATACACACGCACGCC------------CGCACG----------TACATACATACTTG-AGAT--CTACA--------------TTGATCAGATAAGAGAGA---ATAGAGGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
gi|9 : atgatgccattACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAgagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 88888888888888888888888888888888 33333333333333 1111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 22 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 0 44444444444444444444444444444444 1 77 33333333333333 0000 0000000000000 1 33333333333333333333333333333333333333333333333333333333333 000000000000 22 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . . ................................ . .. .............. .... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 1 6 44444444444444444444444444444444 4 99 66666666666666 1111 1111111111111 4 22222222222222222222222222222222222222222222222222222222222 555555555555 00 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNN----------NACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaacttACAATCGCACTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---GAAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG----------CACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGAGAGAGAGAGAAAAAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA----------CACA----------CACAC--ACACA--------------C--------GAGAGTGT---AGAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------CACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGATAGAGAGA---AAAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA--------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGATATAGAGA---AAAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : ACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 66666666666666666666666666666666 22222222222222 11111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 22 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 22 66666666666666666666666666666666 0 0 66 99999999999999 5 22222 0000000000000 1 33333333333333333333333333333333333333333333333333333333333 000000000000 22 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . .. ................................ . . .. .............. . ..... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 4 11 00000000000000000000000000000000 4 1 99 44444444444444 0 88888 1111111111111 4 22222222222222222222222222222222222222222222222222222222222 555555555555 00 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNN----------NACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaacttACAATCGCACTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---G-AAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG----------CACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGA-GAGAGAGAGAAA-AAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA----------CACA----------CACAC--ACACA--------------C---------GAGAGTGT---A-GAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------CACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGA-TAGAGAGA---A-AAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGA-TATAGAGA---A-AAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : CACATACACACGCACGCC------------CGCACG----------TACATACATACTTG-AGAT--CTACA--------------TTGATCAGATAAGAGAGA---ATAGAGGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
gi|9 : atgatgccattACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAgagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 88888888888888888888888888888888 33333333333333 1111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 22 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 0 44444444444444444444444444444444 1 77 33333333333333 0000 0000000000000 1 33333333333333333333333333333333333333333333333333333333333 000000000000 22 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . . ................................ . .. .............. .... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 1 6 44444444444444444444444444444444 4 99 66666666666666 1111 1111111111111 4 22222222222222222222222222222222222222222222222222222222222 555555555555 00 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNN----------NACAATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---AAAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaacttACAATCGCACTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA---GAAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG----------CACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGAGAGAGAGAGAAAAAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA----------CACA----------CACAC--ACACA--------------C--------GAGAGTGT---AGAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------CACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGATAGAGAGA---AAAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGAGAGAGAGA--------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGATATAGAGA---AAAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : ACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 66666666666666666666666666666666 22222222222222 11111 2222222222222 88888888888888888888888888888888888888888888888888888888888 222222222222 22 11111 1111111 11111 22222 333333333333333333 11111111 111
lowQualScore : 1 2 0000 4 22 66666666666666666666666666666666 0 0 66 99999999999999 5 22222 0000000000000 1 33333333333333333333333333333333333333333333333333333333333 000000000000 22 55 55555 4444444 11111 55555 666 333333333333333333 777 4 777 1 00000000 1 4 1 3 1 888 4 2 777 1 4 777 777 4 66 4 66 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . .. ................................ . . .. .............. . ..... ............. . ........................................................... ............ .. .. ..... ....... ..... ..... ... .................. ... . ... . ........ . . . . . ... . . ... . . ... ... . .. . .. . . . . . . . . . .
lowQualScore : 6 8 6666 4 11 00000000000000000000000000000000 4 1 99 44444444444444 0 88888 1111111111111 4 22222222222222222222222222222222222222222222222222222222222 555555555555 00 55 66666 4444444 11111 00000 222 333333333333333333 888 4 888 8 66666666 9 0 6 6 8 777 4 6 888 7 4 000 000 0 11 4 99 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCAGGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNN----------NACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTA-AAGTTAACACACTAGAAGCGAT-A-GTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaacttACAATCGCACTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---G-AAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaA-AAGTTGACATACACGAAGCGATCA-G-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNNNNNNNNACACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG----------CACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGA-GAGAGAGAGAAA-AAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAA----GTT------G--------------------------------GC---A--T--ACTACAAG-CGAC----TAGACGCGGT-A-----------ATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTA----CAAA-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGac
gi|20 : taacatagagttcagttagct---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA----------CACA----------CACAC--ACACA--------------C---------GAGAGTGT---A-GAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTA-AATTTGACAAACTAAAACCAATTA-G-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGT-ATGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ----------CACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGA-TAGAGAGA---A-AAAGGAAA---------AA--GGAGATGATATGAGA------------------GAGAGAG-AGAG-AGAGA-------------GAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAAA-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTT-TTGTTCACATACTAGAAGCGATTA-G-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCCT----------T--------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAAAAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG--TT-------------TA-AACTT----------------T-A-G-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAAC-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTA-AAGTTGACAGACTAAA-----T---G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGT-ATAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGA-TATAGAGA---A-AAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATA-AAGTGCACATACTAGAAGCGATTA-G-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAAT-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATA-AAGTTGACATACTAGAAGCGAT-AAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : CACATACACACGCACGCC------------CGCACG----------TACATACATACTTG-AGAT--CTACA--------------TTGATCAGATAAGAGAGA---ATAGAGGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
gi|9 : atgatgccattACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAAA-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTA-AAGTTGAgagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
blockSeqs : G A TGAA A NN NNNNNNNNNNNNNNNNNNNNNA CG NNNNNNNNNNNNNN T GAAA TGATTTNNNNN N TCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAAG GGATACAAGTAG CC AC AACAA ATCAATG TTTAG AGGTT TGT GTTCTAAGAT AGT A CAA A AATCATT C C G T A CA . T CCG G T CCG GAC C TC T GT C T A A T C C C
blockSeqs : G N NNNN N NN NNNNNNNNNNNNNAATCGCACG . . . AT AAAA T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG . CC . A . . ACT G TATGTACTA . . . A GAAA C . G A C TA . T . T . . . . . . . . . A . T G C C
blockSeqs : G A NNNN N GT CGCCCGCACG . . . G AGT C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTA . CC . . . . AG G ATACTAATG . . . A GAAA T . G T A TA . G . G . . . . . . . . . A . T G . .
blockSeqs : C N TCAA G AT CGCACA . . . A AA T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTA . TG . . . . . A GTTC . . . A ATA C . C G A TA . A . T . . . . . . . . . . . .
blockSeqs : G A CC G AC GGCCTT . . . A AA T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAG . . . . . . . G GTTC . . . A AAA A . G T A AA . T . T . . . . . . . . . . . .
blockSeqs : A G . A . . . . A AG C NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN . . . . . . . G CTCC . . . C AAA A . C T A A . G . G . . . . . . . .
blockSeqs : G . . . . . . AA T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA . . . . . . . G G . . . . AT C . G . . A . T . T . . . . . . . .
blockSeqs : T GAGAGAGAGAGAGAGAGAATTG . . . . . . . . . . . . . . . . G . . . . . . G . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : NGCCCGCACG********************** TA*
originalCons : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCT----------TCGCACG----------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGAT-A-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
finalCons : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCCCGCACG----------------------CACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAAA-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTA-AAGTTGACATACTAGAAGCGATTA-G-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGT-ATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT
Alignments
lowQualScore : 1111 6666666666666666666666666666666666666 22222222222222 11111 2222222222222 77777777777777777777777777777777777777777777777777777777777777777 222222222222 22 1111111 1111111 11111 22222 333333333333333333 1
lowQualScore : 1 2 0000 4 22 7777777777777777777777777777777777777 0 0 66 99999999999999 5 22222 0000000000000 1 44444444444444444444444444444444444444444444444444444444444444444 000000000000 22 55 5555555 4444444 11111 55555 666 000000000000000000 888 5 888 0 1 0 66 66 0 0 0 4 1 777 1 4 777 777 4 66 4 66 0 0 5 6 3 6 7 0 1 2 2 0
lowQualScore : . . .... . .. ..................................... . . .. .............. . ..... ............. . ................................................................. ............ .. .. ....... ....... ..... ..... ... .................. ... . ... . . . .. .. . . . . . ... . . ... ... . .. . .. . . . . . . . . . . . .
lowQualScore : 6 8 6666 4 11 1111111111111111111111111111111111111 4 1 99 44444444444444 0 88888 1111111111111 4 44444444444444444444444444444444444444444444444444444444444444444 555555555555 00 55 0000000 4444444 11111 00000 222 000000000000000000 888 0 888 1 1 0 99 99 2 9 8 4 0 888 7 4 000 000 0 11 4 99 1 1 0 7 2 7 3 7 0 5 5 2
consensus : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCC------------CGCACG------------C--ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATGAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAA-A-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTAAAGTTGACATACTAGAAGCGATTAG-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGTA-TGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
Reference ( family-2228 ) : NAATGTTGCCTTTCACAGACACACGCGCACTCAAGCACGTACGTACGCANGCC------------CGCACG------------C--ACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--GGAGACGATTTGAGATCTACATTGATCAGATAAGAGAGAG-AGAG-AGAGACT---------GGGAA----TTGTTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTCGGAAAA-A-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--ACTAAAGTTGACATACTAGAAGCGATTAG-ACGCNGCAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATCAAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGTA-TGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGACGGTAATTTTCTAACATTAAGATCTAAATTATTCCATNTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTGTTATTTGCTATTATATAGTCTTCAG
gi|1 : AATGTTGCCTTTCACAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------NNNNNN------------NNNACAATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---A-AAAGGAAA---------AA--TGAGATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTTTTA------------TGTAAGTA--AGTGCTCGATTT--TGGAGTCTGAAAA-A-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGTA-AA--A--ATTAAAGTTAACACACTAGAAGCGA-TAGTACGCAGCAATTAACCCTTGAACCGATCTGAAG---ATATGAACATTTTCCTCGTGAGATAAGTCTACACTTTCACAA-AGCATCAACTCTAAAGTAATAATACCGTTAA---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAATTAAA-GAAACCATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATATTAACTCTAAACAAATCATAATTAAGTGAAACGCATAAATACGCTAAGCGTGTA-TGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCAGGTAATGAAAATAACGAGTTAGTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAATTTTAAGATCTAAATTATTCCATCTACTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATCTATTATTTGTTATTATATAGTCTTCAG
gi|11 : aATGTTGCCTTTCACAGACATAC
gi|11 : gttgagaactt--ACAATCGCACTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---G-AAAAGAGATGATTTNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AGTGCTCGATTT--Catatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaatcgcacttacacacacacattcaaaagagagagagagaaaagagatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattattatgtaagtaagtgctcgatttc
gi|12 : gttgagaacttatgttgcctttcacagacatacatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaAAAGTTGACATACACGAAGCGATCAG-ATGCTGCAATAAACCCTTGAACCGATCTTAAG---ATATGCACATTTTCCTCGTGAGATAAGTTGGCACTT-CAGAATTGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-AT
gi|13 : AGTGTTACCTTTCACA----CACGTGCACTGAAGCACATACGttgctga
gi|16 : atcattccctaaatttgtatttatttttccaaaatgttccaaagaggtttaacatattttataacataatatgtacatacagttgagttgactATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------NNNNNNNNNNNNNNNNNAC--ACAATCGTATTTACAGAC--ACACA--------------TTCAAAc
gi|18 : atagagttgagttaacttATGTTGCCTTTCACAGAC
gi|19 : cttcccttaatttgagtttacaaataacatgaatatggctaaacatctataataccatatattaacatagagttgagttaacttAATGTTGCCTTTCACACACACACACGCAC
gi|2 : aatatattgtataccatatacattgtgtaaccaacgctaagttgactAATGTTGCCTTTCACAGACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCGCACG------------C--ACAATTGTATTTNNNNNN--NNNNNNNNNNNNNNNNNNNTTCAAAAGA-GAGAGAGAGAAA-AAAGTAAA---------AA--AGATATGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------------------TTA------------TGTAAGTA--AGTGCTCGATTT--CGGAGTTGGAAAA-A-----CAAAG-------TATTGT-----GGG-----TGG-G-GTAAAac
gi|2 : taacatagagttcagttagctTAAAGTTGGCATACTACAAGCGACTAG-ACGCGGTAATAAACCCTTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCATTAACTATTAAGTAATAATATTGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAGTTATTACAA----A-GAAAAAATGATACGCATTTTCATATGCATTTTCACAAATACAGCTCGGTTCATTTA-CAATATTAACTCTAAACAAATCATAAGTAAGTGGTCTGCATTGATACTTTAAGCGTGCAATGTATAATATTTAATTTTCTTTTGCCGTGATTGTAATGATCATGTCATGAAATTAACGAGTAATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAAATTTTTAACATTAAGATCTCAATTATTCCATCTTCTTATAGTTGGCGGCACAAAGGATTTATTTGATAATGTTAATCTGTAATTTGCTATTATATAATCCTCAGgttggcatactacaagcgactagacgcggtaataaacccttgaaccgatctgaagatatgcacattttcctcgtgagataagtttgcacttccacaaagcattaactattaagtaataatattgttattttgtagagatgtaaacaattgttgacgttgaacagtatagttattacaaagaaaaaatgatacgcattttcatatgcattttcacaaatacagctcggttcatttacaatattaactctaaacaaatcataagtaagtggtctgcattgatactttaagcgtgcaatgtataatatttaattttcttttgccgtgattgtaatgatcatgtcatgaaattaacgagtaattatcatttgttatagctgttttgaactgtgccaatgatggtaaatttttaacattaagatctcaattattccatcttcttatagttggcggcacaaaggatttatttgataatgttaatctgtaatttgctattatataatcctcag
gi|20 : taacatagagttcagttagctaatgttgcctttcacagacatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatcgcacgcacaattgtatttnnnnnnnnnnnnnnnnnnnnnnnnnttcaaaagagagagagagaaaaaagtaaaaaagatatgatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatgtaagtaagtgctcgatttcggagttggaaaaacaaagtattgtgggtgggg---TC---TGTTAAG-ATG--TTAAC-AATTGTGTTAACGTTTTACAGTATAATTGATACAATTAAA-GTAAACATTATGTGCAT
gi|3 : ATGTTGCCTTTCACAAACACACGCGC------GCAC------ACGCA----------------CGCACA------------C--ACA----------CACAC--ACACA--------------C---------GAGAGTGT---A-GAAGAAAA---------AGT-GGAGACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNTT---------AG----------TTA------------TGCAAATACCAGTGCTCGATTT--CGGAGTCGGAAAA-T-----CAAAGATCAATGTATTGT-----AAG-----CGG-G-GTAAATGTGGTTTAA---GT-----TCTAAGATAG---TT-T---AAATTTGTAGAA--A--ACTAAATTTGACAAACTAAAACCAATTAG-AAGCT-CAATAAACCCCTGAACTGATCTGAAGCCGATATGCACATTTTCCTCTTGAGACAAGTTGGCACTTCCACAA-AGCATCAACTCTAGATTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAACAGTATAATTATTACAATTAAA-GAAAAAA----AAG-AT----ACATGCATTTCCACAACTACAACTAGGTTCATTTA-CAATAATAACTCTA-------------------AACTGCATTGATACCTTAAGCGTGTA-TGTATTATATTCAATTT------------AATGTAATGATCAGGTAAAGAAAATACCGAGTTATTATCACATGTTATAGCTGTTTTAAACTGTGCCAATGACGGTAATTTTATTATAT--AGATCTAAAGTATTCCATGTTCTTATAGTTGACGG-A-AAAGGAAATATTCGATAATGTCCATCTGTTATTTGGTATTACAGAATCTTCAG
gi|4 : ------------C--ACAATCGCATT-AC-CACCGACACA--------------TTCAAAAGA-TAGAGAGA---A-AAAGGAAA---------AA--GGAGATGAT--------------------ATGAGAGAGAG-AGAG-AGAGA-----------GAGAA----TTGTTA------------TGTTAGTA--AGTACTCGTTTT--CGGAGTCGAAAAA-A-----CAAAG-------TATTGT-----GGG-----TGA-A-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AT--A--ATTTTTGTTCACATACTAGAAGCGATTAG-ACGCGGCAATAAACCCTTGAACTGATCTGAAT---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTAT---TT---TGTAGAG-ATG--TAAAC-AATTGT--TGACGTTGAGCAGTATAGTTACTACAATCTAA-GAAAAAATGATACGCATTTTCACATGCATTTCCACAACTACAACTAGGTTCATTTA-CATTATTAACTCTAAACAAATCATAATTAAGTGAACTGCATTGATACCTTAAGCGTGTA-TGTACAATATTTAATTTTCTTTTGCCGTGATTGTAATAATCAGGTAATGAAAATAACGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGATAATTTTCGAACATTAAGATCTAAATTATTCCATGTTCTTATAGTTGACGGCACAAAGGATTTATTCGATAATGTTAATATGTTATTTGCTATTATATAGTCTTCAG
gi|5 : AATGTTGCCTTTCACAGACATACATACACTCAAGCACGTACGTACGCAGGCC------------TT----------------------ATCGCATTTACACAC--ACACA--------------TTCAAAAGA-GAGAGAGA---------GAAA---------AG--GGAGATTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NN-----------------------TTATTG------------TGGTAGTA--AGTGCTCGATTT--CAGAGTCGAAAAA-AAACAACAAAG-------TAGTGT-----GGGAG---TGG-G-GTAATTGTGGTTTA-------------------AG---TT-C---AG-TTT-----A--A--ACT----------------------TTAG-ACGCAGCAATAAACCATTGAACCGATCTGAAG---ATATGCACATTTTCCTCGTGAGATAAGTTTGCACTTCCTCAA-AGCATCAACTCTAAAGTAACAATACT----T---TT---TTTAGAG-ATG--CAAAC-AATTGT--TGTCGTTTAAAAGTATAGTTAATACAATCAAA-GAAAAAATGATAAATATTTCCACATGCATTTCCACAACTACAACTAGGTTCATTTTTCAATATTAAC-------AGATTATAATTAAGTGAACTGCATTGATACCTTAAGCGTGTA-TGTATAATAT---ATTT-CTGTTGCCGTGATTGTAATGATAAGGTAATGAAAATATCGAGTTATTATCATTTGTTATAGCTGTTTTGAACTGTGCCAATGATGGTAATTTTCTAACATTAAGATCTAAATa
gi|6 : agagttgagttaactAAA---------AA--GGAGACAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNNNNNTTTGTTA------------TGTAAGTACCAGAACTCGATTT--CAGAGTCTGATAA-C-----CA--G-------TATTTTTTTAGGGGAGGTTTGGTGTGTAAATGTGATTTAATATGTAC---TA------AG---ATATCAAAAACTTGTA-AATCATTACTAAAGTTGACAGACTAAA------T-G-ACGCTGCAATAAACCCCTGAAACAATCTTAGG---ATATGAACGGCTTCCTCTTGAGATAAGTTGGCAATTCCATAC-AGCATCAACTCTGGAGTAATAATACTGTTAT---TT---TGTTGAG-ATG--T-------------TGGCGTTGAACAGTCAAATTATTACAAGCG----------TTATACACATTTTCACATGCATT-CCACAACTAAAACTAGGTACATTTA-CAATATTAACTCTAAACAAAACATAATTAAGTGAACTGCATTGGTATCTCAAGCGTGTA-TAAGTGATATTTAATTTTCTTTTACCGTGATTGTAATGATCAGATAAAGAAAATAA----TTATTTTCACTGGCTATATCTGTTTTAAACTGAGCCAATGACGGTGATTTTCTAATAATGAGATGTAAATTAGTCCA
gi|7 : AGA-TATAGAGA---A-AAAGGAAA---------AAAAGGAGATGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNN-NNNNNNN---------NNNNA----TTATTA------------TGTAAGTA--AATGCTCGATTT--CGGAGTCGGAAAAAA-----CAAAG-------TTTTGT-----GGG-----TGG-G-GTAAATGTGGTTTAA---GT-----TC------AG---TT-T---AAACTTGCA-AA--A--AATAAAGTGCACATACTAGAAGCGATTAG-ACGCGGCAATAAATCTTTGAACCGATCTGAAA---ATATTCACATTTTCCTCGTGAGATAAATTTGCACTTCCACAA-AGCAACAACTCTAAAGTAATAATACCGTTATCCGTTGACTGTGAAGCATGTCTAAAT-AATT
gi|8 : TGTTA------------TGCAAGTACCAGTGCTCGATTT--CGGAGTCGGAAAA-T-----CAAAG-------TATAGT-----GGG-----TGG-G-GTAAATAAGGTTTAA---CT-----CC------AG---TT-T---AAACTTGTAGAA--A--AATAAAGTTGACATACTAGAAGCGATAAG-TCGTTGCAATTAACCCTTGAACCGATTTGATG---ATATGCACAATTTCTTCGTGAAATTAGTTGACACTTCCACAA-AGCATCAACTTTAAAGTAATACTACCGTTAT---TT---TGTAGAG-ATG--CAAACTATTTTT--TAACGTTGAACAGTATAGTTATTACAATCAAACCAAAAAATGAtagtgtgtaatttcaaattttggcacattaattaagaattcaaacatgtcgttataataattaa
gi|9 : ATGATGCCATTCACATACACACGCACGCCC--GCACGTACATACactttcgcggccgtaccatgattgca
gi|9 : CACATACACACGCACGCC------------CGCACG------------T--ACATACATACTTG-AGAT--CTACA--------------TTGATCAGATAAGAGAGA---ATAGAGGAatacttgagatctacattgatcagataagagagaatagaggagagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
gi|9 : atgatgccattACTTGAGATCTACATTGATCAGATAAGAGAGAATAGAGGAGAGACTATATAGCAAGGGAA------GCTAGGATACAAGTAGTGCAAATATGAATGTTC-ATTTACCCGAGTCGGAGAA-A-----CAAAC-------TATTGA-----GAAACT--TGG----TAAATGTCGTCTAA---ATACTAATG------AGAGTTT-T---AACCTTGCA-AA--A--GCTAAAGTTGAgagactatatagcaagggaagctaggatacaagtagtgcaaatatgaatgttcatttacccgagtcggagaaacaaactattgagaaacttggtaaatgtcgtctaaatactaatgagagttttaaccttgcaaaagctaaagttgattgactaacacaatgaatctga
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TGCGACTGTGTTATTTAGCGCACAGATGTAAATACTGTGTATGATTGTAACATATTTTATTGTCAATTATGTAAATGTACGATTGGGTCAGGCCACAAGTGATACCCACATTAGTTACGGCACTTCCCTTAGACTGAGTATACAAATATCATGAATATGGCTAAACATATTTAATAACATATATTAACATAGAGTTGATTAATTAATTAATTAATAATTTTGCCTTTCACAAACATA
Unaligned ( gi|14 ): TTACATTTGTATTGCCAAATATGTACAAGTACAATGGAATATGGTCAGGCCACATATGCTATCAACATTAGTGACGTGTTTACAGATGTTATGAGTATGGCCAAACATAGCTTATAACATAGTTACGTAG
Unaligned ( gi|15 ): AATGCAATTTGATCAGGCCACAAGTAATATCCACAATATTTACGGTCATTCCAGAATTTAATAATATAATAATTTGCTGTGGTTTAATAATTTCAATTAAATAACACAGAGTTTGGATTAATTATAA
Unaligned ( gi|17 ): AATATTAACACTTGATTTAAACATAGTTTATGGTCAAATATGTACAGATTCATTGCAATTATGTTGAGCAACAAGTGACACCCACATTTGTTACGGTCCCTCA
Unaligned ( gi|21 ): TGATTTAAACATATGTTATTGCCAAATGTGTACAAGTACATTGTAATTGTGTT