lowQualScore : 3333 11 1 11 1 11111111 22 111 11111111111111111 1111111111111 1111111111 222222222222222 111111111 11111111111111111111111 3333333333 99999999999999999999999999999
lowQualScore : 3 8888 22 88 4 7 7 6 9 6 11 8 4 1 777 3 0 88888888 4 4 55 33 3 0 3 666 3 000 6666 22222222222222222 8888888888888 5555555555 111111111111111 6666 333333333 55 88888888888888888888888 9999999999 3 66666 44 1 444 1 3 22222222222222222222222222222 2 88 44 3 6
lowQualScore : . .... .. .. . . . . . . .. . . . ... . . ........ . . .. .. . . . ... . ... .... ................. ............. .......... ............... .... ......... .. ....................... .......... . ..... .. . ... . . ............................. . .. .. . .
lowQualScore : 0 0000 00 00 0 0 0 7 0 7 00 0 0 4 444 5 1 44444444 0 0 00 22 6 3 8 444 6 999 7777 66666666666666666 3333333333333 9999999999 666666666666666 7777 777777777 00 99999999999999999999999 1111111111 6 55555 66 0 555 1 2 66666666666666666666666666666 9 88 66 3 0
consensus : TTCACNGCCAGGGTAGTAGTACNTGTTTGTAAGAGGAGACNNTCANATTACAACGCTACACTAGGCTATCTGCTGATGGTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATTTCAAA--TTTT-AGNA-GTTGGCG-TTAAAC---T----TTT-TTTT-C--AAA-CTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TAT--T-----T--T--T--GCCAA-------------TTAAATG----------TAT------T-AA----CA--ATAATC--------TAGT--AGT-ATGCAA-AANNATAA-CAA---AAACAATGCA-TGATGACC-GT-GA--AA--TTTCGAAAAAGGGTTNTCTGATTTG-A---TGAATCAT--TGAAAT-A-AT-TATATA-AAACC-TGCCCCAGAGCC--ATCTTGCGGC-TTTTATATGGCAGT
Reference ( gi|3 ) : TTTACTGCCAGGGTAGTAA---ATATTTACAAGAGGAGACTATCAAATTACAACGCTACACTAGGCTAACTGCTGATGGTGAATTAACACAGATACATGTGTATAGAATGCATCTCCCTCGAATTTCAAA--TTTT-AGAA-GTTGGAG-TTAAAC---T----TTT-TTTT-C--AA--CTGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TAT--T-----T--T--T--GCCAA-------------TTAAATG----------TAT------T-AA----CA--ACAATC--------TAAT--AGT-TTGCAC-AATTATAA-CAA---AAACAATGTATTGTTGAGT-GT-GA--AA--TTTTGAAAAAGGGTTATCTGATTTG-A-C-TGAATCAT--TGAAAT-A-ATGTATATA-AAACT-TGCCCCAGAGTC--ATCTTGTGGC-TTTTATATGGCAAT
gi|16 : TTCACGGCCAGAGTAGTAGTACATGTTTGTAAGAGGAGACTATCATATTACAACG
gi|4 : TTACTGCCAGGGTAGTAA---CTATTTGTAAGAGGAGACATTCAAATTACAACGCTACACTAGGCTATCTGCTGATGGTGAATTAACACAGATCCATGTGTATAGAGTGCATCTTCCTCAAATTCCAAA--TTTT-TGAA-GTTGGAGTTTAAA---------TTT-TTTA-A--AA--ATGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TAT--T-----T--T--TTGGCCAA-------------TCAAATG----------TAT------T--------A--ATTATC--------CAGT--AGT-ATGCAA-AATGAAAA-CAA---AAACAATGCAGTGACGACT-GT-GA--AA--TTTT-AAAAAGGG-TAC---ATTTGTA-C-T--------------T-A-AT-TATATA-AAACC-TGCTTCAGAGCC--ATCTTGCGGC-ATTTATATGGCAG
gi|6 : CACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATTTCAAA--TTTT-GGCA-GTTGGCG-TTAAACA--T----TTT-TTTTAT--AT--TTTCAT-ATAACAAA---CAC-TCATTGG---AG--T-T-T--T-----T--T--T--CCCAA-------------TTAAATG----------CAT------TAAA----TA--ATAATA--------TAAT--AGT-ATGCAT-CATTAT-T-CAG---AAACAATGCAATGATGACC-GT-GA--TA--TTTTGAAAAAGGGTTCTCTGATTTG-----T--ATCAT--GTATAT-A-AGTTATATA-AAACT-TGCTCCAGGGTC--ACCTTGCTGC-TTTGATGTGGCta
gi|1 : TACATGT-TATAAACT---CCTCCATTGAATTTTAAA--TTTTTAGTA-GTTTAAT-TTCA-T---T----TTT-TTTT-C--AAA-CTGCAT-AGAACATA---CAC-TTTTTGA-A-AA--TATAT--T-----T--T--TT-GTCAA-------------TTGGGTG----------TAT------T-AA----CA--ATAATC--------TTCT--AGT-ATGCAA-AATAATAA-CAA---AAACAATGC---------T-GT-GATCAG--TTTAGTTAAAGGGTTCTCTGACT-------TGAATCAT--GTATAG-A-AT-TATATA-TAATC-TGCCCTAGGGCC--ATCTTGCGGC-TTCTATATCGCAG
gi|9 : ttctgccagggcagagagttatgtaggagtggcttatgtacaccagctgttttctttacctgttagttagttatggctttttttttttaaaaaaacacaccattactcgtctgctgaattgatacatgcgtatttattATTTCAAA--TTTT-AGGATACTTGAA-TTAAAC---TGTTATTT-TCTT-CCCAA--ATGTAT-AAAACATG---CAC-TTTTTTA-ATAA--T-CCT--T-----T--TG-T--GCC-A-------------TTAGA-------------AT------C-AA----TATGATAACG--------TCGT--ATT-ATGCAA-AATAAAAA-TAAATCAGAAAAT---------AGT-GTAGA--AA--TAC--AGGAAGAGTTATCTAA--TG-AGT-TGAATCA---TGTATT-G-AT-TATATA-
gi|5 : TCAAGCGTTTC-AAAATGTTGGCA-T----C---T----TGT-TTTT-C--CATTCTGCA--ATAACAAA---TAC-ATTTTAG---GA--T-TAT--T-----TG-TTGT--GTCAA-------------CTGAGTA----------TGT------T-TA----TA--TCGATCATGCTACATGATCGAGT-ATATATAAAGTAAAATCAT---AAATAATTTAGTGGTGGCT-GT-----AA--TTTCAAAAA-----TATTTT-TTTG-G-TATGAATTATG-T---AT-AGACGTG-ATT-ATACT---ACCAAGAACC--ATTTTGTGGC-TTGTACATAGCAG
gi|8 : agatccatgtgctagtgattatatatgacctcacaagctctccA-GTTGTTG-TTAAACATTT----TTT-TTTT-C--AAA-CTGCAT-ATAACAGA---CAC-TTTTTGG-A-AG--T-TAT--TATTTAT--T--T--GCCAATTATAATTTAGTTTTAAATG----------TAT------T-AA----CA--ATAATC--------TAGA--AGT-ATGCAA-AACGATAA-CAA---AAACAATGCATTGAT--GC-CT-GA--AACTTTTTGAAAAAGGGTTCTCTAATT-------TGAACCA---TGTACTGA-AT-TATATA-AAACA-TGCCCCAGAGCC--ATCTTGCGGC-TTTTATATGGCAG
gi|7 : A-GTTGATG-TTTAAC---T----ATTATTTT-C--AAA-CTGCATTATAACAAA---TAG-TTTTTAT-T-AA--A-TAA--T-----T--T--G--GCCAA-------------TTGCATGAATTGATTTTTATTTTCACT-AATTGTCA--ATAATT--------CAGT--AGTGTTATAA-AAGTATA---TA---AAACAAGGCAGTGGTGTCT-GT-GT--AA--TTTCCAAAAAG----AACTG-TTT------TGAGTCAT----AAAC---ATGTTT--------T-T----CAAAATCCTATTCTATGGC-CTTTATGTCGCAtgg
gi|2 : gcgtcttctttaaataacagctctttgttgcG-TTTAAC---T----TGT-TTTA-C--AAA-CTGCAC-ATAACACA---CGT-TTTTTGG-G-AA--A-TATCTT-----T--T--T--GCCTA-------------TTAGATG----------CAT------T-AA----TA--ATAATC--------TAAA--A-------AC-ATGTATAA-TAA---AAATAAGGCAATG-CAACT-TA-GA--AA--GCATGAAAAA-TGTTATCTGATTTA-A-----AGTAAC--T-ATAT-A-AT-TATATA-AAACC-TG-CCCAGAACC--ATCCTGTGGC-cttggg
gi|10 : ttctgccgggatagagagttatgcaggagtggttaatgtacaacaactgttttcactacctgtcagttgtgatgcagtctttttaaatacaccattactcggctgcttgtatgcgtataaacacagatccacatgcacgtgtttacaaattagagtgcaattgttgtcagtttatTT-TTAC-C--AA--CTTCAT-AAAACATA---CATATTTTCGG-A-AAAAT-CAT--C-----TCTT--T--GCCAA-------------TTTAATT----------TATGA----T-CA----AA--AAAATA--------AAAT--AGT-T-------AGTAT---CCA---AAATAATG----ATTAAGC-AC-----AA--CTCTGATGA------ATTTGATTTG-----TGAAT-AT--TTGAAT------CATATA-AAAC--TGCCTTAGGGCT--ATTTTGTGGA-TTATATATatcttggaacttt
gi|17 : TT-CTTT-C--AAA-CTGAAT-ATAACACA---CAC-TTTTTGGAA-AA--T-TATA-T-----T--T--T--ACCAT-------------TTcacatt
gi|12 : --AA--CTGTAT-CAAACAAAGTTTAC-CTTTTGG-A-AA--A-TAG--G-----T--T--TA-GCCAA-------------TTAAATG----------CAT------T---------------TA--------TAAT--AGT-TTGCCA-AATCATGA-T-A---AAACAA-------TTGAGTGGT-GA---------TG----GGAGTTTTCTGATTTG-A-------------TAAAAG-A-GTTTG---A-AAACC-TGCCC
gi|11 : AT--T-----T--T--T--GCCAA-------------TTTAATG----------TAT------T-AA----CA--ATAATC--------TTGT--AGT-ATGCA---------A-CAT---AA-CAATGCATTGATGACT-GT-AA--AA--TTTTGAAAAAAAGTTCTCTGATTTA-A------ATCAT---GTACTGA-AT-TATATA-AAACC-TGTCCCAGAGCC--ATCTTGCGGC-TTTTATATGGCAG
gi|13 : --AA--TTTCGAAAAAGGGTTCTCTGACTCG-A------ATCGTACTGAATT-A-A-----AGA-AATCC-TGCGCCAGAGTC--ATCTTGTGGC-TTTTATATGGCAGtaagggc
gi|15 : -A-AT-TGTGTA-AGATTCTGCGCCAGAGTC--AT-TTATGGCATTTTATtggg
gi|14 : gTATATACAAATA-TACCC-AGAGTC--ATCTTGTTGT-TTTTCTATtgcagtttggtctttaa
Alignments
lowQualScore : 22222 111 1 1 2222222222 111 1111 1111 1111 11111111111111 11111 1111111111111 1111111111 3333333333333333333333333333333 3333333333333333 11 5555555555555555555555555
lowQualScore : 0 1 55555 777 3 0 22 1 7 4 7 3 6 9999999999 6 1 11 000 5 3 66 0000 5 5 4444 2 66 0000 44444444444444 3 8888 3 3 1 555 3 999 5555 44 3 77777 77 00000 6666666666666 4444444444 6666666666666666666666666666666 3 3 555 44 77 3 1111111111111111 44 00 3 3333333333333333333333333 3 3 3 1 1
lowQualScore : . . ..... ... . . .. . . . . . . .......... . . .. ... . . .. .... . . .... . .. .... .............. . .... . . . ... . ... .... .. . ..... .. ..... ............. .......... ............................... . . ... .. .. . ................ .. .. . ......................... . . . . .
lowQualScore : 7 0 22222 555 2 0 00 0 3 7 3 3 7 2222222222 7 0 44 000 7 0 99 6666 0 0 8888 8 11 9999 22222222222222 6 2222 3 3 0 888 3 333 4444 22 1 77777 33 55555 9999999999999 6666666666 5555555555555555555555555555555 3 3 888 33 99 3 0000000000000000 22 55 2 2222222222222222222222222 1 1 1 5 8
consensus : TTTACTGCCAGGGTAGTAGTACATGT---TTGTAAGAGG-AGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTG----------TATA-GAGTGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-G--GNAG--TTGGCG-TTAA----AC---T----TTT-TTTTC--A-A-ACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T--T--GCCAA-------------TTAAATG----------TAT------T---AA----CA-------------ATAATCTAG-TAGTA-TGCAA---AATNATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTCGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--T---GAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
Reference ( family-22 ) : TTCACNGCCAGGGTAGTAGTACNTGT---TTGTAAGAGG-AGACNNTCANATTACAACGCTACACTAGGCTATCTGCTGATG-GTGAATTAACACAGATCCATGTG----------TATA-GAGTGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-A--GNAG--TTGGCG-TTAA----AC---T----TTT-TTTTC--A-A-ACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T--T--GCCAA-------------TTAAATG----------TAT------T---AA----CA-------------ATAATCTAG-TAGTA-TGCAA---AANNATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTCGAAAAAGGGTTNTCTGATTTGA-TG-AATCAT--T---GAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
gi|1 : CATGT-----------TATA-AACT---C---CTC-CATTGAA--TT----TTAAAT-T-TTTA--GTAG--TT------TAATTTCAT---T----TTT-TTTTC--A-A-ACTGCAT-AGAACATA---CAC-TTTTTGA-A-AA--TATA--T-T-----T--T--TT-GTCAA-------------TTGGGTG----------TAT------T---AA----CA-------------ATAATCTTC-TAGTA-TGCAA---AATAATAA--CA-AAAACAATGC---T-G--TG--ATC----AG--TTTAGTTAAAGGGTTCTCTGACT----TG-AATCAT--G---TATAG-A-A-T-TATATATAATCTGCCCTAGGGCCATCTTGCGGCTTCTATATCGCAGT
gi|10 : ttctgccagggcagagagttatgtaggagtggcttatgtacaccagctgttttctttacctgttagttagttatggctttttttttttaaaaaaacacaccattactcgtctgctgaattgatacatgcgtatttatttaT-TTTAC--C-A-ACTTCAT-AAAACATA---CATATTTTCGG-A-AAAAT-CA--T-C-----TCTT--T--GCCAA-------------TTTAATT----------TATGA----TCAAAA----AA-------------ATAAAATAGTTAGTA-TCCAA---AATAATGAT-TA-AGCACAACTC---T-GA-TG---------AA--TT----------------TGATTTG--TG-AATATT--T---G-----A-A-T-CATATAAAA-CTGCCTTAGGGCTATTTTGTGGATTATATAT
gi|11 : A--T-T-----T--T--T--GCCAA-------------TTTAATG----------TAT------T---AA----CA-------------ATAATCTTG-TAGTA-TGCAA------CATAA--CA-A------TGC-A-TTGA-TG--ACTGTAAAA--TTTTGAAAAAAAGTTCTCTGATTTAA-----ATCAT------GTACTGA-A-T-TATATAAAACCTGTCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcacatt
gi|12 : -A-ACTGTAT-CAAACAAAGTTTAC-CTTTTGG-A-AA--A-TA--G-G-----T--T--TA-GCCAA-------------TTAAATG----------CAT------T-------------------------TA---TAA-TAGTT-TGCCA---AATCATGA--T--AAAACAAT-----T-GAGTG-----GTGA------TGG-----GAGTTTTCTGATTTGA------------T---AAAAG-A-G-T-T-TG-AAAACCTGCCCtaagggc
gi|13 : AA--TTTCGAAAAAGGGTTCTCTGACTCGA-----ATCGTACT---GAATT-A-A------AGAAATCCTGCGCCAGAGTCATCTTGTGGCTTTTATATGGCAGT
gi|16 : TTCACGGCCAGAGTAGTAGTACATGT---TTGTAAGAGG-AGACTATCATATTACAACGtggg
gi|17 : TT-CTTTC--A-A-ACTGAAT-ATAACACA---CAC-TTTTTGGAA-AA--T-TA--TAT-----T--T--T--ACCAT-------------TT
gi|2 : TACCTGTCAGTTGT--GATGCAGTCTTTTTAAATACACCATTAC--TCGGCTGCTTGT--ATGCGT--ATAAACACAGATCCACATG----------CAC----GTG--T---TTA-C---AAA--TTAGAGTGCAAT-TGTT-G--TCAG--TTTATG-TTTA----AC---T----TGT-TTTAC--A-A-ACTGCAC-ATAACACA---CGT-TTTTTGG-G-AA--A-TATCT-T-----T--T--T--GCCTA-------------TTAGATG----------CAT------T---AA----TA-------------ATAATCTAA-AAACA-TG---------TATAA--TA-AAAATAAGGC-A----A-TGCAACTTAGAAA--GCATGAAAAA-TGTTATCTGATTTAA-AGTAACTAT---------AT-A-A-T-TATATAAAACCTG-CCCAGAACCATCCTGTGGC
gi|3 : ttctgccgggatagagagttatgcaggagtggttaatgtacaacaactgttttcacTTTACTGCCAGGGTAGTAA---ATAT---TTACAAGAGG-AGACTATCAAATTACAACGCTACACTAGGCTAACTGCTGATG-GTGAATTAACACAGATACATGTG----------TATA-GAATGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-A--GAAG--TTGGAG-TTAA----AC---T----TTT-TTTTC----A-ACTGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T--T--GCCAA-------------TTAAATG----------TAT------T---AA----CA-------------ACAATCTAA-TAGTT-TGCAC---AATTATAA--CA-AAAACAATGT-ATT-GT-TG--AGTGTGAAA--TTTTGAAAAAGGGTTATCTGATTTGACTG-AATCAT--T---GAAAT-A-A-TGTATATAAAACTTGCCCCAGAGTCATCTTGTGGCTTTTATATGGCAATatcttggaacttt
gi|4 : TTACTGCCAGGGTAGTA--AC-TAT---TTGTAAGAGG-AGACATTCAAATTACAACGCTACACTAGGCTATCTGCTGATG-GTGAATTAACACAGATCCATGTG----------TATA-GAGTGCAT---CTT-CCTCAAA--TT----CCAAAT-T-TT-T--GAAG--TTGGAGTTTAA----A----------TT-TTTTA--A-A-AATGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T--TTGGCCAA-------------TCAAATG----------TAT------T----------A-------------ATTATCCAG-TAGTA-TGCAA---AATGAAAA--CA-AAAACAATGC-AGT-GA-CG--ACTGTGAAA--TTTT-AAAAAGGGTAC----ATTTG--------TAC--T-------T-A-A-T-TATATAAAACCTGCTTCAGAGCCATCTTGCGGCATTTATATGGCAGT
gi|5 : AGATCCATGTGCTAGTGATTATATATGACCTCACAAGCTCTCCTCAAGCGTT----TCAAAA-T----------G--TTGGCA-T--------C---T----TGT-TTTTC--C-ATTCTGCA--ATAACAAA---TAC-ATTTTAG---GA--T-TA--T-T-----TG-TTGT--GTCAA-------------CTGAGTA----------TGT------T---TA----TATCGATCATGCTACATGATCGAG-TA-TA-TATAA---AGTAAAAT--CA-TAAATAATTT-AGT-GG-TG--GCTGT--AA--TTTC-AAAAATATTTTTTTGGT---A-TG-AATTATG-TATAGACGT-G-A-T-TATA------CTA-CCAAGAACCATTTTGTGGCTTGTACATAGCAGTta
gi|6 : CACAGATCCATGTG----------TATA-GAGTGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-G--GCAG--TTGGCG-TTAA----AC---A----TTT-TTTTT--ATA-TTTTCAT-ATAACAAA---CAC-TCATTGG---AG--T-T---T-T-----T--T--T--CCCAA-------------TTAAATG----------CAT------TA--AA----TA-------------ATAATATAA-TAGTA-TGCAT---CATTAT-T--CA-GAAACAATGCAA-T-GA-TG--ACCGTGATA--TTTTGAAAAAGGGTTCTCTGATTTG--T---ATCAT--G---TATAT-A-AGT-TATATAAAACTTGCTCCAGGGTCACCTTGCTGCTTTGATGTGGC
gi|7 : GCGT---CTT-CTTTAAA--TA----ACAGCTCT-TT-GTTGCAG--TTGATG-TTTA----AC---T----ATTATTTTC--A-A-ACTGCATTATAACAAA---TAG-TTTTTAT-T-AA--A-TA--A-T-----T--T--G--GCCAA-------------TTGCATGAATTGATTTTTATTTTCACT---AATTGTCA-------------ATAATTCAG-TAGTGTTATAA---AAGTATA----T-AAAACAAGGC-AGT-GG-TG--TCTGTGTAA--TTTCCAAAAAGAA----CTG-TTT---TG-AGTCAT-------AAAC-ATG-T-TTTTCAAAATC----------CTATTCTATGGCCTTTATGTCGCA
gi|8 : AG--TTGTTG-TTAA----ACATTT----TTT-TTTTC--A-A-ACTGCAT-ATAACAGA---CAC-TTTTTGG-A-AG--T-TA--T-TATTTAT--T--T--GCCAATTATAATTTAGTTTTAAATG----------TAT------T---AA----CA-------------ATAATCTAG-AAGTA-TGCAA---AACGATAA--CA-AAAACAATGC-ATT-GA-TG---CC-TGAAACTTTTTGAAAAAGGGTTCTCTAATT----TG-AACCA---T---GTACTGA-A-T-TATATAAAACATGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcttggg
gi|9 : A--TT----TCAAAT-T-TT-A--GGATACTTGA-A-TTAA----AC---TGTTATTT-TCTTCCCA-A-A-TGTAT-AAAACATG---CAC-TTTTTTA-ATAA--T-CC--T-T-----T--TG-T--GCCA--------------TTAGA-------------AT------C---AA----TATG-----------ATAACGTCG-TATTA-TGCAAAATAAAAATAAATCAGAAAATAGTGT-A---------------GAAA--TAC--AGGAAGAGTTATCTAATGAGT-TG-AATCA---T---GTATT-G-A-T-TATATAtgg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTATATACAAATATACCCAGAGTCATCTTGTTGTTTTTCTATCACATTTAAGAGTTTAAGA
Unaligned ( gi|15 ): GAATTGTGTAAGATTCTGCGCCAGAGTCATTTATGGCATTTTATTGCAGTTTGGTCTTTAA
Alignments
lowQualScore : 33333 1 1111 1111 1111 1111 11111111 11 1111111111111 1111111111 22222222222222222 1111 1111111 3333333333333333 5555555555555555555555
lowQualScore : 22222 0 1 3 7 1 7 3 6 0 44 5 2222 5 5 4444 1 66 4444 0000 66666666 4 7777 3 0 1 666 3 666 6666 44 3 88888 44 3 11 8888888888888 5555555555 22222222222222222 55 0 3 3 0000 1111111 4444444444444444 44 88 1 2222222222222222222222 3 3 3
lowQualScore : ..... . . . . . . . . . .. . .... . . .... . .. .... .... ........ . .... . . . ... . ... .... .. . ..... .. . .. ............. .......... ................. .. . . . .... ....... ................ .. .. . ...................... . . .
lowQualScore : 00000 7 0 2 3 0 3 3 7 8 00 2 1111 7 7 0000 0 99 0000 6666 66666666 0 4444 6 3 0 444 6 555 7777 66 3 33333 66 3 22 3333333333333 9999999999 00000000000000000 00 5 6 6 9999 5555555 6666666666666666 66 88 8 8888888888888888888888 3 3 3
consensus : TTTACTGCCAGGGTAGTAG-ACATATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNAG--TTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAG-TAGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
Reference ( family-22 ) : TTTACTGCCAGGGTAGTAGTACATGTTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNAG--TTGGCG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAG-TAGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTCGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
gi|1 : CATGT-TATAAACT---CCTCCATTGAATT----TTAAAT-T-TTTA--GTAG--TT------TAATTTCAT---T----TTT-TTTTC--A-AACTGCAT-AGAACATA---CAC-TTTTTGA-A-AA--TATA--T-T-----T--T-TT-GTCAA-------------TTGGGTG----------TAT------T---AA----CA--ATAATCTTC-TAGTA-TGCAAAAT---AATAA--CA-AAAACAATGC---T-G--TG--ATC----AG--TTTAGTTAAAGGGTTCTCTGACT----TG-AATCAT--GTATAG-A-A-T-TATATATAATCTGCCCTAGGGCCATCTTGCGGCTTCTATATCGCAGT
gi|10 : ttctgccagggcagagagttatgtaggagtggcttatgtacaccagctgttttctttacctgttagttagttatggctttttttttttaaaaaaacacaccattactcgtctgctgaattgatacatgcgtatttatttaT-TTTAC--C-AACTTCAT-AAAACATA---CATATTTTCGG-A-AAAAT-CA--T-C-----TCTT-T--GCCAA-------------TTTAATT----------TATGA----TCAAAA----AA--ATAAAATAGTTAGTA-TCCAAAAT---AATGAT-TA-AGCACAACTC---T-GA-TG---------AA--TT----------------TGATTTG--TG-AATATT--TG-----A-A-T-CATATAAAA-CTGCCTTAGGGCTATTTTGTGGATTATATAT
gi|11 : A--T-T-----T--T-T--GCCAA-------------TTTAATG----------TAT------T---AA----CA--ATAATCTTG-TAGTA-TGCAACAT---------------AACAATGC-A-TTGA-TG--ACTGTAAAA--TTTTGAAAAAAAGTTCTCTGATTTAA-----ATCAT---GTACTGA-A-T-TATATAAAACCTGTCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcacatt
gi|12 : -AACTGTAT-CAAACAAAGTTTAC-CTTTTGG-A-AA--A-TA--G-G-----T--T-TA-GCCAA-------------TTAAATG----------CAT------T--------------TA---TAA-TAGTT-TGCCAAAT---CATGA--T--AAAACAAT-----T-GAGTG-----GTGA------TGG-----GAGTTTTCTGATTTGA------------TAAAAG-A-G-T-T-TG-AAAACCTGCCCtaagggc
gi|13 : AA--TTTCGAAAAAGGGTTCTCTGACTCGA-----ATCGTACTGAATT-A-A------AGAAATCCTGCGCCAGAGTCATCTTGTGGCTTTTATATGGCAGT
gi|16 : TTCACGGCCAGAGTAGTAGTACATGTTTGTAAGAGGAGACTATCATATTACAACGtggg
gi|17 : TT-CTTTC--A-AACTGAAT-ATAACACA---CAC-TTTTTGGAA-AA--T-TA--TAT-----T--T-T--ACCAT-------------TT
gi|2 : TTTTAAAT-ACACCATTAC--TCGGCTGCTTGT--ATGCGT--ATAAACACAGATCCACATGCAC---GTG--TTTAC---AAATTAGAGTGCAAT-TGTT-G--TCAG--TTTATG-TTTA----AC---T----TGT-TTTAC--A-AACTGCAC-ATAACACA---CGT-TTTTTGG-G-AA--A-TATCT-T-----T--T-T--GCCTA-------------TTAGATG----------CAT------T---AA----TA--ATAATCTAA-AAACA-TG---------TATAA--TA-AAAATAAGGC-A----A-TGCAACTTAGAAA--GCATGAAAAA-TGTTATCTGATTTAA-AGTAACTAT------AT-A-A-T-TATATAAAACCTG-CCCAGAACCATCCTGTGGC
gi|3 : ttctgccgggatagagagttatgcaggagtggttaatgtacaacaactgttttcactacctgtcagttgtgatgcagtctTTTACTGCCAGGGTAGTAA---ATATTTACAAGAGGAGACTATCAAATTACAACGCTACACTAGGCTAACTGCTGATG-GTGAATTAACACAGATACATGTGTATAGAATGCATCTCCCTCGAATT----TCAAAT-T-TT-A--GAAG--TTGGAG-TTAA----AC---T----TTT-TTTTC----AACTGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ACAATCTAA-TAGTT-TGCACAAT---TATAA--CA-AAAACAATGT-ATT-GT-TG--AGTGTGAAA--TTTTGAAAAAGGGTTATCTGATTTGACTG-AATCAT--TGAAAT-A-A-TGTATATAAAACTTGCCCCAGAGTCATCTTGTGGCTTTTATATGGCAATatcttggaacttt
gi|4 : TTACTGCCAGGGTAGTA--AC-TATTTGTAAGAGGAGACATTCAAATTACAACGCTACACTAGGCTATCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTTCCTCAAATT----CCAAAT-T-TT-T--GAAG--TTGGAGTTTAA----A----------TT-TTTTA--A-AAATGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-TTGGCCAA-------------TCAAATG----------TAT------T----------A--ATTATCCAG-TAGTA-TGCAAAAT---GAAAA--CA-AAAACAATGC-AGT-GA-CG--ACTGTGAAA--TTTT-AAAAAGGGTAC----ATTTG--------TAC--T----T-A-A-T-TATATAAAACCTGCTTCAGAGCCATCTTGCGGCATTTATATGGCAGT
gi|6 : CACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GCAG--TTGGCG-TTAA----AC---A----TTT-TTTTT--ATATTTTCAT-ATAACAAA---CAC-TCATTGG---AG--T-T---T-T-----T--T-T--CCCAA-------------TTAAATG----------CAT------TA--AA----TA--ATAATATAA-TAGTA-TGCATCAT---TAT-T--CA-GAAACAATGCAA-T-GA-TG--ACCGTGATA--TTTTGAAAAAGGGTTCTCTGATTTG--T---ATCAT--GTATAT-A-AGT-TATATAAAACTTGCTCCAGGGTCACCTTGCTGCTTTGATGTGGCta
gi|7 : GCGTCTTCTTTAAATA----ACAGCTCT-TT-GTTGCAG--TTGATG-TTTA----AC---T----ATTATTTTC--A-AACTGCATTATAACAAA---TAG-TTTTTAT-T-AA--A-TA--A-T-----T--T-G--GCCAA-------------TTGCATGAATTGATTTTTATTTTCACT---AATTGTCA--ATAATTCAG-TAGTGTTATAAAAG---TATA----T-AAAACAAGGC-AGT-GG-TG--TCTGTGTAA--TTTCCAAAAAGAA----CTG-TTT---TG-AGTCAT----AAAC-ATG-T-TTTTCAAAATC----------CTATTCTATGGCCTTTATGTCGCA
gi|8 : AG--TTGTTG-TTAA----ACATTT----TTT-TTTTC--A-AACTGCAT-ATAACAGA---CAC-TTTTTGG-A-AG--T-TA--T-TATTTAT--T-T--GCCAATTATAATTTAGTTTTAAATG----------TAT------T---AA----CA--ATAATCTAG-AAGTA-TGCAAAAC---GATAA--CA-AAAACAATGC-ATT-GA-TG---CC-TGAAACTTTTTGAAAAAGGGTTCTCTAATT----TG-AACCA---TGTACTGA-A-T-TATATAAAACATGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcttggg
gi|9 : ATT----TCAAAT-T-TT-A--GGATACTTGA-A-TTAA----AC---TGTTATTT-TCTTCCCA-AA-TGTAT-AAAACATG---CAC-TTTTTTA-ATAA--T-CC--T-T-----T--TGT--GCCA--------------TTAGA-------------AT------C---AA----TATGATAACGTCG-TATTA-TGCAAAATAAAAATAAATCAGAAAATAGTGT-A---------------GAAA--TAC--AGGAAGAGTTATCTAATGAGT-TG-AATCA---TGTATT-G-A-T-TATATAtgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGATCCATGTGCTAGTGATTATATATGACCTCACAAGCTCTCCTCAAGCGTTTCAAAATGTTGGCATCTTGTTTTTCCATTCTGCAATAACAAATACATTTTAGGATTATTTGTTGTGTCAACTGAGTATGTTTATATCGATCATGCTACATGATCGAGTATATATAAAGTAAAATCATAAATAATTTAGTGGTGGCTGTAATTTCAAAAATATTTTTTTGGTATGAATTATGTATAGACGTGATTATACTACCAAGAACCATTTTGTGGCTTGTACATAGCAGT
Unaligned ( gi|14 ): TTATATACAAATATACCCAGAGTCATCTTGTTGTTTTTCTATCACATTTAAGAGTTTAAGA
Unaligned ( gi|15 ): GAATTGTGTAAGATTCTGCGCCAGAGTCATTTATGGCATTTTATTGCAGTTTGGTCTTTAA
Alignments
lowQualScore : 33333 1 1111 1111 1111 11111111 11 1111111111111 1111111111 22222222222222222 1111 1111111 3333333333333333 5555555555555555555555
lowQualScore : 88888 1 3 7 1 7 3 6 0 44 5 2222 5 5 4444 1 5 55555 0000 66666666 4 7777 3 0 1 666 3 666 6666 44 3 88888 44 3 11 8888888888888 5555555555 22222222222222222 55 0 3 3 0000 1111111 4444444444444444 44 222 1 2222222222222222222222 3 3 3
lowQualScore : ..... . . . . . . . . .. . .... . . .... . . ..... .... ........ . .... . . . ... . ... .... .. . ..... .. . .. ............. .......... ................. .. . . . .... ....... ................ .. ... . ...................... . . .
lowQualScore : 33333 0 2 3 0 3 3 7 8 00 2 1111 7 7 0000 0 0 66666 6666 66666666 0 4444 6 3 0 444 6 555 7777 66 3 33333 66 3 22 3333333333333 9999999999 00000000000000000 00 5 6 6 9999 5555555 6666666666666666 66 777 8 8888888888888888888888 3 3 3
consensus : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNA-GTTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAG-TAGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
Reference ( family-22 ) : TTTACTGCCAGGGTAGTAG-ACATATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNA-GTTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAG-TAGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
gi|1 : CATGT-TATAAACT---CCTCCATTGAATT----TTAAAT-T-TTTA--GTA-GTT------TAATTTCAT---T----TTT-TTTTC--A-AACTGCAT-AGAACATA---CAC-TTTTTGA-A-AA--TATA--T-T-----T--T-TT-GTCAA-------------TTGGGTG----------TAT------T---AA----CA--ATAATCTTC-TAGTA-TGCAAAAT---AATAA--CA-AAAACAATGC---T-G--TG--ATC----AG--TTTAGTTAAAGGGTTCTCTGACT----TG-AATCAT--GTATAG-A-A-T-TATATATAATCTGCCCTAGGGCCATCTTGCGGCTTCTATATCGCAGT
gi|10 : ttctgccagggcagagagttatgtaggagtggcttatgtacaccagctgttttctttacctgttagttagttatggctttttttttttaaaaaaacacaccattactcgtctgctgaattgatacatgcgtatttatttaT-TTTAC--C-AACTTCAT-AAAACATA---CATATTTTCGG-A-AAAAT-CA--T-C-----TCTT-T--GCCAA-------------TTTAATT----------TATGA----TCAAAA----AA--ATAAAATAGTTAGTA-TCCAAAAT---AATGAT-TA-AGCACAACTC---T-GA-TG---------AA--TT----------------TGATTTG--TG-AATATT--TG-----A-A-T-CATATAAAA-CTGCCTTAGGGCTATTTTGTGGATTATATAT
gi|11 : A--T-T-----T--T-T--GCCAA-------------TTTAATG----------TAT------T---AA----CA--ATAATCTTG-TAGTA-TGCAACAT---------------AACAATGC-A-TTGA-TG--ACTGTAAAA--TTTTGAAAAAAAGTTCTCTGATTTAA-----ATCAT---GTACTGA-A-T-TATATAAAACCTGTCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcacatt
gi|12 : -AACTGTAT-CAAACAAAGTTTAC-CTTTTGG-A-AA--A-TA--G-G-----T--T-TA-GCCAA-------------TTAAATG----------CAT------T--------------TA---TAA-TAGTT-TGCCAAAT---CATGA--T--AAAACAAT-----T-GAGTG-----GTGA-------TG----GGAGTTTTCTGATTTGA------------TAAAAG-A-G-T-T-TG-AAAACCTGCCCtaagggc
gi|13 : AA--TTTCGAAAAAGGGTTCTCTGACTCGA-----ATCGTACTGAATT-A-A------AGAAATCCTGCGCCAGAGTCATCTTGTGGCTTTTATATGGCAGT
gi|16 : TTCACGGCCAGAGTAGTAGTACATGTTTGTAAGAGGAGACTATCATATTACAACGtggg
gi|17 : TT-CTTTC--A-AACTGAAT-ATAACACA---CAC-TTTTTGGAA-AA--T-TA--TAT-----T--T-T--ACCAT-------------TT
gi|2 : TTTTAAAT-ACACCATTAC--TCGGCTGCTTGT--ATGCGT--ATAAACACAGATCCACATGCAC---GTG--TTTAC---AAATTAGAGTGCAAT-TGTT-G--TCA-GTTTATG-TTTA----AC---T----TGT-TTTAC--A-AACTGCAC-ATAACACA---CGT-TTTTTGG-G-AA--A-TATCT-T-----T--T-T--GCCTA-------------TTAGATG----------CAT------T---AA----TA--ATAATCTAA-AAACA-TG---------TATAA--TA-AAAATAAGGC-A----A-TGCAACTTAGAAA--GCATGAAAAA-TGTTATCTGATTTAA-AGTAACTAT------AT-A-A-T-TATATAAAACCTG-CCCAGAACCATCCTGTGGC
gi|3 : ttctgccgggatagagagttatgcaggagtggttaatgtacaacaactgttttcactacctgtcagttgtgatgcagtctTTTACTGCCAGGGTAGTAA-A--TATTTACAAGAGGAGACTATCAAATTACAACGCTACACTAGGCTAACTGCTGATG-GTGAATTAACACAGATACATGTGTATAGAATGCATCTCCCTCGAATT----TCAAAT-T-TT-A--GAA-GTTGGAG-TTAA----AC---T----TTT-TTTTC----AACTGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ACAATCTAA-TAGTT-TGCACAAT---TATAA--CA-AAAACAATGT-ATT-GT-TG--AGTGTGAAA--TTTTGAAAAAGGGTTATCTGATTTGACTG-AATCAT--TGAAAT-A-A-TGTATATAAAACTTGCCCCAGAGTCATCTTGTGGCTTTTATATGGCAATatcttggaacttt
gi|4 : TTACTGCCAGGGTAGTA--AC-TATTTGTAAGAGGAGACATTCAAATTACAACGCTACACTAGGCTATCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTTCCTCAAATT----CCAAAT-T-TT-T--GAA-GTTGGAGTTTAA----A----------TT-TTTTA--A-AAATGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-TTGGCCAA-------------TCAAATG----------TAT------T----------A--ATTATCCAG-TAGTA-TGCAAAAT---GAAAA--CA-AAAACAATGC-AGT-GA-CG--ACTGTGAAA--TTTT-AAAAAGGGTAC----ATTTG--------TAC--T----T-A-A-T-TATATAAAACCTGCTTCAGAGCCATCTTGCGGCATTTATATGGCAGT
gi|6 : CACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GCA-GTTGGCG-TTAA----AC---A----TTT-TTTTT--ATATTTTCAT-ATAACAAA---CAC-TCATTGG---AG--T-T---T-T-----T--T-T--CCCAA-------------TTAAATG----------CAT------TA--AA----TA--ATAATATAA-TAGTA-TGCATCAT---TAT-T--CA-GAAACAATGCAA-T-GA-TG--ACCGTGATA--TTTTGAAAAAGGGTTCTCTGATTTG--T---ATCAT--GTATAT-A-AGT-TATATAAAACTTGCTCCAGGGTCACCTTGCTGCTTTGATGTGGCta
gi|7 : GCGTCTTCTTTAAATA----ACAGCTCT-TT-GTTGCA-GTTGATG-TTTA----AC---T----ATTATTTTC--A-AACTGCATTATAACAAA---TAG-TTTTTAT-T-AA--A-TA--A-T-----T--T-G--GCCAA-------------TTGCATGAATTGATTTTTATTTTCACT---AATTGTCA--ATAATTCAG-TAGTGTTATAAAAG---TATA----T-AAAACAAGGC-AGT-GG-TG--TCTGTGTAA--TTTCCAAAAAGAA----CTG-TTT---TG-AGTCAT----AAAC-ATG-T-TTTTCAAAATC----------CTATTCTATGGCCTTTATGTCGCA
gi|8 : A-GTTGTTG-TTAA----ACATTT----TTT-TTTTC--A-AACTGCAT-ATAACAGA---CAC-TTTTTGG-A-AG--T-TA--T-TATTTAT--T-T--GCCAATTATAATTTAGTTTTAAATG----------TAT------T---AA----CA--ATAATCTAG-AAGTA-TGCAAAAC---GATAA--CA-AAAACAATGC-ATT-GA-TG---CC-TGAAACTTTTTGAAAAAGGGTTCTCTAATT----TG-AACCA---TGTACTGA-A-T-TATATAAAACATGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcttggg
gi|9 : ATT----TCAAAT-T-TT-A--GGATACTTGAA-TTAA----AC---TGTTATTT-TCTTCCCA-AA-TGTAT-AAAACATG---CAC-TTTTTTA-ATAA--T-CC--T-T-----T--TGT--GCCA--------------TTAGA-------------AT------C---AA----TATGATAACGTCG-TATTA-TGCAAAATAAAAATAAATCAGAAAATAGTGT-A---------------GAAA--TAC--AGGAAGAGTTATCTAATGAGT-TG-AATCA---TGTATT-G-A-T-TATATAtgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGATCCATGTGCTAGTGATTATATATGACCTCACAAGCTCTCCTCAAGCGTTTCAAAATGTTGGCATCTTGTTTTTCCATTCTGCAATAACAAATACATTTTAGGATTATTTGTTGTGTCAACTGAGTATGTTTATATCGATCATGCTACATGATCGAGTATATATAAAGTAAAATCATAAATAATTTAGTGGTGGCTGTAATTTCAAAAATATTTTTTTGGTATGAATTATGTATAGACGTGATTATACTACCAAGAACCATTTTGTGGCTTGTACATAGCAGT
Unaligned ( gi|14 ): TTATATACAAATATACCCAGAGTCATCTTGTTGTTTTTCTATCACATTTAAGAGTTTAAGA
Unaligned ( gi|15 ): GAATTGTGTAAGATTCTGCGCCAGAGTCATTTATGGCATTTTATTGCAGTTTGGTCTTTAA
Alignments
lowQualScore : 33333 1 1111 1111 1111 11111111 11 1111111111111 1111111111 22222222222222222 1111 1111111 3333333333333333 5555555555555555555555
lowQualScore : 66666 1 3 7 1 7 3 6 0 44 5 2222 5 5 4444 1 5 55555 0000 66666666 4 7777 3 0 1 666 3 666 6666 44 3 88888 44 3 11 8888888888888 5555555555 22222222222222222 55 0 3 3 0000 1111111 4444444444444444 44 222 1 2222222222222222222222 3 3 3
lowQualScore : ..... . . . . . . . . .. . .... . . .... . . ..... .... ........ . .... . . . ... . ... .... .. . ..... .. . .. ............. .......... ................. .. . . . .... ....... ................ .. ... . ...................... . . .
lowQualScore : 33333 0 2 3 0 3 3 7 8 00 2 1111 7 7 0000 0 0 66666 6666 66666666 0 4444 6 3 0 444 6 555 7777 66 3 33333 66 3 22 3333333333333 9999999999 00000000000000000 00 5 6 6 9999 5555555 6666666666666666 66 777 8 8888888888888888888888 3 3 3
consensus : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNA-GTTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAGT-AGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
Reference ( family-22 ) : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNA-GTTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAGT-AGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
gi|1 : CATGT-TATAAACT---CCTCCATTGAATT----TTAAAT-T-TTTA--GTA-GTT------TAATTTCAT---T----TTT-TTTTC--A-AACTGCAT-AGAACATA---CAC-TTTTTGA-A-AA--TATA--T-T-----T--T-TT-GTCAA-------------TTGGGTG----------TAT------T---AA----CA--ATAATCTTCT-AGTA-TGCAAAAT---AATAA--CA-AAAACAATGC---T-G--TG--ATC----AG--TTTAGTTAAAGGGTTCTCTGACT----TG-AATCAT--GTATAG-A-A-T-TATATATAATCTGCCCTAGGGCCATCTTGCGGCTTCTATATCGCAGT
gi|10 : ttctgccagggcagagagttatgtaggagtggcttatgtacaccagctgttttctttacctgttagttagttatggctttttttttttaaaaaaacacaccattactcgtctgctgaattgatacatgcgtatttatttaT-TTTAC--C-AACTTCAT-AAAACATA---CATATTTTCGG-A-AAAAT-CA--T-C-----TCTT-T--GCCAA-------------TTTAATT----------TATGA----TCAAAA----AA--ATAAAATAGTTAGTA-TCCAAAAT---AATGAT-TA-AGCACAACTC---T-GA-TG---------AA--TT----------------TGATTTG--TG-AATATT--TG-----A-A-T-CATATAAAA-CTGCCTTAGGGCTATTTTGTGGATTATATAT
gi|11 : A--T-T-----T--T-T--GCCAA-------------TTTAATG----------TAT------T---AA----CA--ATAATCTTGT-AGTA-TGCAACAT---------------AACAATGC-A-TTGA-TG--ACTGTAAAA--TTTTGAAAAAAAGTTCTCTGATTTAA-----ATCAT---GTACTGA-A-T-TATATAAAACCTGTCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcacatt
gi|12 : -AACTGTAT-CAAACAAAGTTTAC-CTTTTGG-A-AA--A-TA--G-G-----T--T-TA-GCCAA-------------TTAAATG----------CAT------T--------------TA---TAAT-AGTT-TGCCAAAT---CATGA--T--AAAACAAT-----T-GAGTG-----GTGA-------TG----GGAGTTTTCTGATTTGA------------TAAAAG-A-G-T-T-TG-AAAACCTGCCCtaagggc
gi|13 : AA--TTTCGAAAAAGGGTTCTCTGACTCGA-----ATCGTACTGAATT-A-A------AGAAATCCTGCGCCAGAGTCATCTTGTGGCTTTTATATGGCAGT
gi|16 : TTCACGGCCAGAGTAGTAGTACATGTTTGTAAGAGGAGACTATCATATTACAACGtggg
gi|17 : TT-CTTTC--A-AACTGAAT-ATAACACA---CAC-TTTTTGGAA-AA--T-TA--TAT-----T--T-T--ACCAT-------------TT
gi|2 : TTTTAAAT-ACACCATTAC--TCGGCTGCTTGT--ATGCGT--ATAAACACAGATCCACATGCAC---GTG--TTTAC---AAATTAGAGTGCAAT-TGTT-G--TCA-GTTTATG-TTTA----AC---T----TGT-TTTAC--A-AACTGCAC-ATAACACA---CGT-TTTTTGG-G-AA--A-TATCT-T-----T--T-T--GCCTA-------------TTAGATG----------CAT------T---AA----TA--ATAATCTAAA-AACA-TG---------TATAA--TA-AAAATAAGGC-A----A-TGCAACTTAGAAA--GCATGAAAAA-TGTTATCTGATTTAA-AGTAACTAT------AT-A-A-T-TATATAAAACCTG-CCCAGAACCATCCTGTGGC
gi|3 : ttctgccgggatagagagttatgcaggagtggttaatgtacaacaactgttttcactacctgtcagttgtgatgcagtctTTTACTGCCAGGGTAGTAA-A--TATTTACAAGAGGAGACTATCAAATTACAACGCTACACTAGGCTAACTGCTGATG-GTGAATTAACACAGATACATGTGTATAGAATGCATCTCCCTCGAATT----TCAAAT-T-TT-A--GAA-GTTGGAG-TTAA----AC---T----TTT-TTTTC----AACTGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ACAATCTAAT-AGTT-TGCACAAT---TATAA--CA-AAAACAATGT-ATT-GT-TG--AGTGTGAAA--TTTTGAAAAAGGGTTATCTGATTTGACTG-AATCAT--TGAAAT-A-A-TGTATATAAAACTTGCCCCAGAGTCATCTTGTGGCTTTTATATGGCAATatcttggaacttt
gi|4 : TTACTGCCAGGGTAGTA--AC-TATTTGTAAGAGGAGACATTCAAATTACAACGCTACACTAGGCTATCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTTCCTCAAATT----CCAAAT-T-TT-T--GAA-GTTGGAGTTTAA----A----------TT-TTTTA--A-AAATGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-TTGGCCAA-------------TCAAATG----------TAT------T----------A--ATTATCCAGT-AGTA-TGCAAAAT---GAAAA--CA-AAAACAATGC-AGT-GA-CG--ACTGTGAAA--TTTT-AAAAAGGGTAC----ATTTG--------TAC--T----T-A-A-T-TATATAAAACCTGCTTCAGAGCCATCTTGCGGCATTTATATGGCAGT
gi|6 : CACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GCA-GTTGGCG-TTAA----AC---A----TTT-TTTTT--ATATTTTCAT-ATAACAAA---CAC-TCATTGG---AG--T-T---T-T-----T--T-T--CCCAA-------------TTAAATG----------CAT------TA--AA----TA--ATAATATAAT-AGTA-TGCATCAT---TAT-T--CA-GAAACAATGCAA-T-GA-TG--ACCGTGATA--TTTTGAAAAAGGGTTCTCTGATTTG--T---ATCAT--GTATAT-A-AGT-TATATAAAACTTGCTCCAGGGTCACCTTGCTGCTTTGATGTGGCta
gi|7 : GCGTCTTCTTTAAATA----ACAGCTCT-TT-GTTGCA-GTTGATG-TTTA----AC---T----ATTATTTTC--A-AACTGCATTATAACAAA---TAG-TTTTTAT-T-AA--A-TA--A-T-----T--T-G--GCCAA-------------TTGCATGAATTGATTTTTATTTTCACT---AATTGTCA--ATAATTCAGT-AGTGTTATAAAAG---TATA----T-AAAACAAGGC-AGT-GG-TG--TCTGTGTAA--TTTCCAAAAAGAA----CTG-TTT---TG-AGTCAT----AAAC-ATG-T-TTTTCAAAATC----------CTATTCTATGGCCTTTATGTCGCA
gi|8 : A-GTTGTTG-TTAA----ACATTT----TTT-TTTTC--A-AACTGCAT-ATAACAGA---CAC-TTTTTGG-A-AG--T-TA--T-TATTTAT--T-T--GCCAATTATAATTTAGTTTTAAATG----------TAT------T---AA----CA--ATAATCTAGA-AGTA-TGCAAAAC---GATAA--CA-AAAACAATGC-ATT-GA-TG---CC-TGAAACTTTTTGAAAAAGGGTTCTCTAATT----TG-AACCA---TGTACTGA-A-T-TATATAAAACATGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcttggg
gi|9 : ATT----TCAAAT-T-TT-A--GGATACTTGAA-TTAA----AC---TGTTATTT-TCTTCCCA-AA-TGTAT-AAAACATG---CAC-TTTTTTA-ATAA--T-CC--T-T-----T--TGT--GCCA--------------TTAGA-------------AT------C---AA----TATGATAACGTCGT-ATTA-TGCAAAATAAAAATAAATCAGAAAATAGTGT-A---------------GAAA--TAC--AGGAAGAGTTATCTAATGAGT-TG-AATCA---TGTATT-G-A-T-TATATAtgg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGATCCATGTGCTAGTGATTATATATGACCTCACAAGCTCTCCTCAAGCGTTTCAAAATGTTGGCATCTTGTTTTTCCATTCTGCAATAACAAATACATTTTAGGATTATTTGTTGTGTCAACTGAGTATGTTTATATCGATCATGCTACATGATCGAGTATATATAAAGTAAAATCATAAATAATTTAGTGGTGGCTGTAATTTCAAAAATATTTTTTTGGTATGAATTATGTATAGACGTGATTATACTACCAAGAACCATTTTGTGGCTTGTACATAGCAGT
Unaligned ( gi|14 ): TTATATACAAATATACCCAGAGTCATCTTGTTGTTTTTCTATCACATTTAAGAGTTTAAGA
Unaligned ( gi|15 ): GAATTGTGTAAGATTCTGCGCCAGAGTCATTTATGGCATTTTATTGCAGTTTGGTCTTTAA
Alignments
lowQualScore : 33333 1 1111 1111 1111 11111111 11 1111111111111 1111111111 22222222222222222 1111 1111111 3333333333333333 5555555555555555555555
lowQualScore : 66666 1 3 7 1 7 3 6 0 44 5 2222 5 5 4444 1 5 55555 0000 66666666 4 7777 3 0 1 666 3 666 6666 44 3 88888 44 3 11 8888888888888 5555555555 22222222222222222 55 0 3 3 0000 1111111 4444444444444444 44 222 1 2222222222222222222222 3 3 3
lowQualScore : ..... . . . . . . . . .. . .... . . .... . . ..... .... ........ . .... . . . ... . ... .... .. . ..... .. . .. ............. .......... ................. .. . . . .... ....... ................ .. ... . ...................... . . .
lowQualScore : 33333 0 2 3 0 3 3 7 8 00 2 1111 7 7 0000 0 0 66666 6666 66666666 0 4444 6 3 0 444 6 555 7777 66 3 33333 66 3 22 3333333333333 9999999999 00000000000000000 00 5 6 6 9999 5555555 6666666666666666 66 777 8 8888888888888888888888 3 3 3
consensus : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNA-GTTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAGT-AGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
Reference ( family-22 ) : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNA-GTTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAGT-AGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
gi|1 : CATGT-TATAAACT---CCTCCATTGAATT----TTAAAT-T-TTTA--GTA-GTT------TAATTTCAT---T----TTT-TTTTC--A-AACTGCAT-AGAACATA---CAC-TTTTTGA-A-AA--TATA--T-T-----T--T-TT-GTCAA-------------TTGGGTG----------TAT------T---AA----CA--ATAATCTTCT-AGTA-TGCAAAAT---AATAA--CA-AAAACAATGC---T-G--TG--ATC----AG--TTTAGTTAAAGGGTTCTCTGACT----TG-AATCAT--GTATAG-A-A-T-TATATATAATCTGCCCTAGGGCCATCTTGCGGCTTCTATATCGCAGT
gi|10 : ttctgccagggcagagagttatgtaggagtggcttatgtacaccagctgttttctttacctgttagttagttatggctttttttttttaaaaaaacacaccattactcgtctgctgaattgatacatgcgtatttatttaT-TTTAC--C-AACTTCAT-AAAACATA---CATATTTTCGG-A-AAAAT-CA--T-C-----TCTT-T--GCCAA-------------TTTAATT----------TATGA----TCAAAA----AA--ATAAAATAGTTAGTA-TCCAAAAT---AATGAT-TA-AGCACAACTC---T-GA-TG---------AA--TT----------------TGATTTG--TG-AATATT--TG-----A-A-T-CATATAAAA-CTGCCTTAGGGCTATTTTGTGGATTATATAT
gi|11 : A--T-T-----T--T-T--GCCAA-------------TTTAATG----------TAT------T---AA----CA--ATAATCTTGT-AGTA-TGCAACAT---------------AACAATGC-A-TTGA-TG--ACTGTAAAA--TTTTGAAAAAAAGTTCTCTGATTTAA-----ATCAT---GTACTGA-A-T-TATATAAAACCTGTCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcacatt
gi|12 : -AACTGTAT-CAAACAAAGTTTAC-CTTTTGG-A-AA--A-TA--G-G-----T--T-TA-GCCAA-------------TTAAATG----------CAT------T--------------TA---TAAT-AGTT-TGCCAAAT---CATGA--T--AAAACAAT-----T-GAGTG-----GTGA-------TG----GGAGTTTTCTGATTTGA------------TAAAAG-A-G-T-T-TG-AAAACCTGCCCtaagggc
gi|13 : AA--TTTCGAAAAAGGGTTCTCTGACTCGA-----ATCGTACTGAATT-A-A------AGAAATCCTGCGCCAGAGTCATCTTGTGGCTTTTATATGGCAGT
gi|16 : TTCACGGCCAGAGTAGTAGTACATGTTTGTAAGAGGAGACTATCATATTACAACGtggg
gi|17 : TT-CTTTC--A-AACTGAAT-ATAACACA---CAC-TTTTTGGAA-AA--T-TA--TAT-----T--T-T--ACCAT-------------TT
gi|2 : TTTTAAAT-ACACCATTAC--TCGGCTGCTTGT--ATGCGT--ATAAACACAGATCCACATGCAC---GTG--TTTAC---AAATTAGAGTGCAAT-TGTT-G--TCA-GTTTATG-TTTA----AC---T----TGT-TTTAC--A-AACTGCAC-ATAACACA---CGT-TTTTTGG-G-AA--A-TATCT-T-----T--T-T--GCCTA-------------TTAGATG----------CAT------T---AA----TA--ATAATCTAAA-AACA-TG---------TATAA--TA-AAAATAAGGC-A----A-TGCAACTTAGAAA--GCATGAAAAA-TGTTATCTGATTTAA-AGTAACTAT------AT-A-A-T-TATATAAAACCTG-CCCAGAACCATCCTGTGGC
gi|3 : ttctgccgggatagagagttatgcaggagtggttaatgtacaacaactgttttcactacctgtcagttgtgatgcagtctTTTACTGCCAGGGTAGTAA-A--TATTTACAAGAGGAGACTATCAAATTACAACGCTACACTAGGCTAACTGCTGATG-GTGAATTAACACAGATACATGTGTATAGAATGCATCTCCCTCGAATT----TCAAAT-T-TT-A--GAA-GTTGGAG-TTAA----AC---T----TTT-TTTTC----AACTGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ACAATCTAAT-AGTT-TGCACAAT---TATAA--CA-AAAACAATGT-ATT-GT-TG--AGTGTGAAA--TTTTGAAAAAGGGTTATCTGATTTGACTG-AATCAT--TGAAAT-A-A-TGTATATAAAACTTGCCCCAGAGTCATCTTGTGGCTTTTATATGGCAATatcttggaacttt
gi|4 : TTACTGCCAGGGTAGTA--AC-TATTTGTAAGAGGAGACATTCAAATTACAACGCTACACTAGGCTATCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTTCCTCAAATT----CCAAAT-T-TT-T--GAA-GTTGGAGTTTAA----A----------TT-TTTTA--A-AAATGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-TTGGCCAA-------------TCAAATG----------TAT------T----------A--ATTATCCAGT-AGTA-TGCAAAAT---GAAAA--CA-AAAACAATGC-AGT-GA-CG--ACTGTGAAA--TTTT-AAAAAGGGTAC----ATTTG--------TAC--T----T-A-A-T-TATATAAAACCTGCTTCAGAGCCATCTTGCGGCATTTATATGGCAGT
gi|6 : CACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GCA-GTTGGCG-TTAA----AC---A----TTT-TTTTT--ATATTTTCAT-ATAACAAA---CAC-TCATTGG---AG--T-T---T-T-----T--T-T--CCCAA-------------TTAAATG----------CAT------TA--AA----TA--ATAATATAAT-AGTA-TGCATCAT---TAT-T--CA-GAAACAATGCAA-T-GA-TG--ACCGTGATA--TTTTGAAAAAGGGTTCTCTGATTTG--T---ATCAT--GTATAT-A-AGT-TATATAAAACTTGCTCCAGGGTCACCTTGCTGCTTTGATGTGGCta
gi|7 : GCGTCTTCTTTAAATA----ACAGCTCT-TT-GTTGCA-GTTGATG-TTTA----AC---T----ATTATTTTC--A-AACTGCATTATAACAAA---TAG-TTTTTAT-T-AA--A-TA--A-T-----T--T-G--GCCAA-------------TTGCATGAATTGATTTTTATTTTCACT---AATTGTCA--ATAATTCAGT-AGTGTTATAAAAG---TATA----T-AAAACAAGGC-AGT-GG-TG--TCTGTGTAA--TTTCCAAAAAGAA----CTG-TTT---TG-AGTCAT----AAAC-ATG-T-TTTTCAAAATC----------CTATTCTATGGCCTTTATGTCGCA
gi|8 : A-GTTGTTG-TTAA----ACATTT----TTT-TTTTC--A-AACTGCAT-ATAACAGA---CAC-TTTTTGG-A-AG--T-TA--T-TATTTAT--T-T--GCCAATTATAATTTAGTTTTAAATG----------TAT------T---AA----CA--ATAATCTAGA-AGTA-TGCAAAAC---GATAA--CA-AAAACAATGC-ATT-GA-TG---CC-TGAAACTTTTTGAAAAAGGGTTCTCTAATT----TG-AACCA---TGTACTGA-A-T-TATATAAAACATGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcttggg
gi|9 : ATT----TCAAAT-T-TT-A--GGATACTTGAA-TTAA----AC---TGTTATTT-TCTTCCCA-AA-TGTAT-AAAACATG---CAC-TTTTTTA-ATAA--T-CC--T-T-----T--TGT--GCCA--------------TTAGA-------------AT------C---AA----TATGATAACGTCGT-ATTA-TGCAAAATAAAAATAAATCAGAAAATAGTGT-A---------------GAAA--TAC--AGGAAGAGTTATCTAATGAGT-TG-AATCA---TGTATT-G-A-T-TATATAtgg
blockSeqs : AA T T A A T . G CA C AGAG C G GTT C T GGAGT . TGTTA A CCA T T GTT A AA AAT TC A ATTTA CT G TG TTATAATTTAGTT AATTGATTTT TTTCACTAATTGTC TG T T AAAA AAATCAG ATTGATGACTG CT TTG C TGACTGAATCATTGAAAT T G G
blockSeqs : AC A T A T T . G CA C . . . G A . TATG . ATTT . AT . A . . AT A . . . . . A . . GATCAAAAA . . . A GATTA ATTGTTGAGTG . TCG T CGAATCGTACTGAATT . . .
blockSeqs : T . CA C . . . A A . GGAG . T . C . C . . A T . . . . . . . . TAAAT . . . C AATA AGTGACGACTG . ATG C AGTTGAATCATGTATT . . .
blockSeqs : CG T . . . T C . GGCG . T . A . C . . A A . . . . . . . . TAAC . . . T AACA AATGATGACCG . TTG A TAAATCATGTACTG . . .
blockSeqs : . . . . . G C . GATG . A . A . A . . G T . . . . . . . . TAAT . . . T AACA AGTGGTGTCTG . TTG A TAAAGTAACTATAT . . .
blockSeqs : . . . A G . GTTG . T . A . A . . A T . . . . . . . . TAAC . . . G AACA AATGCAACTT . TCC C TGTATCATGTATAT . . .
blockSeqs : . TGAA . . . A . A . . A T . . . . . . . . TAAC . . . T GAT ATTGATGCC . TTG C TGAACCATGTACTG . . .
blockSeqs : . A . A . . T A . . . . . . . . CAAT . . . T TCA TGAGTGG . TG C TTGAGTCATAAAC . . .
blockSeqs : . . . G . . A T . . . . . . . . T . . . G AT TGATG . TT A TGTGAATATTTG . . .
blockSeqs : . T . . . T . . . . . . . . T . . . . . A . C . TGATAAAAG . . .
blockSeqs : . . . . . . . . . . TGTACTT . . .
blockSeqCons : CA G*** GGCG* **** T*** ** ATGATGACTG******
originalCons : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TT-G--GNA-GTTGGNG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAGT-AGTA-TGCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACCGTGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
finalCons : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTGTATAGAGTGCATCTCCCTCGAATT----TCAAAT-T-TTG---GNA-GTTGGCG-TTAA----AC---T----TTT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AAT---TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA--ATAATCTAGT-AGTA-TGCAAAAT---NATAA--CA-AAAACAATGCATGATGACTG------TGAAA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--TGAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): AGATCCATGTGCTAGTGATTATATATGACCTCACAAGCTCTCCTCAAGCGTTTCAAAATGTTGGCATCTTGTTTTTCCATTCTGCAATAACAAATACATTTTAGGATTATTTGTTGTGTCAACTGAGTATGTTTATATCGATCATGCTACATGATCGAGTATATATAAAGTAAAATCATAAATAATTTAGTGGTGGCTGTAATTTCAAAAATATTTTTTTGGTATGAATTATGTATAGACGTGATTATACTACCAAGAACCATTTTGTGGCTTGTACATAGCAGT
Unaligned ( gi|14 ): TTATATACAAATATACCCAGAGTCATCTTGTTGTTTTTCTATCACATTTAAGAGTTTAAGA
Unaligned ( gi|15 ): GAATTGTGTAAGATTCTGCGCCAGAGTCATTTATGGCATTTTATTGCAGTTTGGTCTTTAA
Alignments
lowQualScore : 33333 1 2222222222 111 1111 1111 1111 1111111111111111 11 1111111111111 1111111111 3333333333333333333333333333333 1111 1111111 22222222222222 5555555555555555555555555
lowQualScore : 66666 1 3 7 1 7 3 6 9999999999 6 1 11 000 5 3 66 0000 5 5 4444 2 66 0000 4444444444444444 3 6666 3 1 555 3 666 5555 44 3 77777 88 6 00 6666666666666 4444444444 6666666666666666666666666666666 3 3 3 555 0000 6666666 99999999999999 0 444444 11 2 3333333333333333333333333 3 3 3 1 1
lowQualScore : ..... . . . . . . . .......... . . .. ... . . .. .... . . .... . .. .... ................ . .... . . ... . ... .... .. . ..... .. . .. ............. .......... ............................... . . . ... .... ....... .............. . ...... .. . ......................... . . . . .
lowQualScore : 33333 0 2 3 0 3 3 7 2222222222 7 0 44 000 7 0 99 6666 0 0 1111 8 11 9999 8888888888888888 6 0000 3 0 888 3 444 4444 22 1 77777 55 2 44 9999999999999 6666666666 5555555555555555555555555555555 3 3 3 888 1111 5555555 22222222222222 3 888888 88 1 2222222222222222222222222 1 1 1 5 8
consensus : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTG----------TATA-GAGTGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-G--GNAG--TTGGCG-TTAA----AC---T----T-TT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA-------------ATAATCTAG-TA-GTA-T---GCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACTGTGA--AA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--T---GAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
Reference ( family-22 ) : TTTACTGCCAGGGTAGTAG-AC-TATTTGTAAGAGGAGACTNTCAAATTACAACGCTACACTAGGCTANCTGCTGATG-GTGAATTAACACAGATCCATGTG----------TATA-GAGTGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-G--GNAG--TTGGCG-TTAA----AC---T----T-TT-TTTTC--A-AACTGCAT-ATAACANA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA-------------ATAATCTAG-TA-GTA-T---GCAAAAT---NATAA--CA-AAAACAATGC-A-T-GA-TG--ACTGTGA--AA--TTTTGAAAAAGGGTTCTCTGATTTGA-TG-AATCAT--T---GAAAT-A-A-T-TATATAAAACCTGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGT
gi|1 : CATGT-----------TATA-AACT---C---CTC-CATTGAA--TT----TTAAAT-T-TTTA--GTAG--TT------TAATTTCAT---T----T-TT-TTTTC--A-AACTGCAT-AGAACATA---CAC-TTTTTGA-A-AA--TATA--T-T-----T--T-TT-GTCAA-------------TTGGGTG----------TAT------T---AA----CA-------------ATAATCTTC-TA-GTA-T---GCAAAAT---AATAA--CA-AAAACAATG--------------CTGTGATCAG--TTTAGTTAAAGGGTTCTCTGACT----TG-AATCAT--G---TATAG-A-A-T-TATATATAATCTGCCCTAGGGCCATCTTGCGGCTTCTATATCGCAGT
gi|10 : ttctgccagggcagagagttatgtaggagtggcttatgtacaccagctgttttctttacctgttagttagttatggctttttttttttaaaaaaacacaccattactcgtctgctgaattgatacatgcgtatttatttaT-TTTAC--C-AACTTCAT-AAAACATA---CATATTTTCGG-A-AAAAT-CA--T-C-----TCTT-T--GCCAA-------------TTTAATT----------TATGA----TCAAAA----AA-------------ATAAAATAGTTA-GTA-T---CCAAAAT---AATGA--TT-AA------GC------A-CA--ACTCTGA---------TGAA---------TTTGATTTG--TG-AATATT--T---G-----A-A-T-CATATAAAA-CTGCCTTAGGGCTATTTTGTGGATTATATAT
gi|11 : A--T-T-----T--T-T--GCCAA-------------TTTAATG----------TAT------T---AA----CA-------------ATAATCTTG-TA-GTA-T---GCAACAT---------------AACAATGC-A-TTGA-TG--ACTGTAA--AA--TTTTGAAAAAAAGTTCTCTGATTTAA-----ATCAT------GTACTGA-A-T-TATATAAAACCTGTCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcacatt
gi|12 : -AACTGTAT-CAAACAAAGTTTAC-CTTTTGG-A-AA--A-TA--G-G-----T--T-TA-GCCAA-------------TTAAATG----------CAT------T-------------------------TA---TAA-TA-GTT-T---GCCAAAT---CATGA--T--AAAACAAT-----T-GAGTG-----GTGA---------TG----GGAGTTTTCTGATTTGA------------T---AAAAG-A-G-T-T-TG-AAAACCTGCCCtaagggc
gi|13 : --AA--TTTCGAAAAAGGGTTCTCTGACTCGA-----ATCGTACT---GAATT-A-A------AGAAATCCTGCGCCAGAGTCATCTTGTGGCTTTTATATGGCAGT
gi|16 : TTCACGGCCAGAGTAGTAGTACATGTTTGTAAGAGGAGACTATCATATTACAACGtggg
gi|17 : -TT-CTTTC--A-AACTGAAT-ATAACACA---CAC-TTTTTGGAA-AA--T-TA--TAT-----T--T-T--ACCAT-------------TT
gi|2 : TTTTAAAT-ACACCATTAC--TCGGCTGCTTGT--ATGCGT--ATAAACACAGATCCACATG----------CAC----GTG--T---TTA-C---AAA--TTAGAGTGCAAT-TGTT-G--TCAG--TTTATG-TTTA----AC---T----T-GT-TTTAC--A-AACTGCAC-ATAACACA---CGT-TTTTTGG-G-AA--A-TATCT-T-----T--T-T--GCCTA-------------TTAGATG----------CAT------T---AA----TA-------------ATAATCTAA-AA-ACA-T---G---------TATAA--TA-AAAATAAGGC-A----A-TGCAACTTAGA--AA--GCATGAAAAA-TGTTATCTGATTTAA-AGTAACTAT---------AT-A-A-T-TATATAAAACCTG-CCCAGAACCATCCTGTGGC
gi|3 : ttctgccgggatagagagttatgcaggagtggttaatgtacaacaactgttttcactacctgtcagttgtgatgcagtctTTTACTGCCAGGGTAGTAA-A--TATTTACAAGAGGAGACTATCAAATTACAACGCTACACTAGGCTAACTGCTGATG-GTGAATTAACACAGATACATGTG----------TATA-GAATGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-A--GAAG--TTGGAG-TTAA----AC---T----T-TT-TTTTC----AACTGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-T--GCCAA-------------TTAAATG----------TAT------T---AA----CA-------------ACAATCTAA-TA-GTT-T---GCACAAT---TATAA--CA-AAAACAATGT-ATT-GT-TG--AGTGTGA--AA--TTTTGAAAAAGGGTTATCTGATTTGACTG-AATCAT--T---GAAAT-A-A-TGTATATAAAACTTGCCCCAGAGTCATCTTGTGGCTTTTATATGGCAATatcttggaacttt
gi|4 : TTACTGCCAGGGTAGTA--AC-TATTTGTAAGAGGAGACATTCAAATTACAACGCTACACTAGGCTATCTGCTGATG-GTGAATTAACACAGATCCATGTG----------TATA-GAGTGCAT---CTT-CCTCAAA--TT----CCAAAT-T-TT-T--GAAG--TTGGAGTTTAA----A-----------TT-TTTTA--A-AAATGCAT-ATAACAAA---CAC-TTTTTGG-A-AA--T-TA--T-T-----T--T-TTGGCCAA-------------TCAAATG----------TAT------T----------A-------------ATTATCCAG-TA-GTA-T---GCAAAAT---GAAAA--CA-AAAACAATGC-AGT-GA-CG--ACTGTGA--AA--TTTT-AAAAAGGGTAC----ATTTG--------TAC--T-------T-A-A-T-TATATAAAACCTGCTTCAGAGCCATCTTGCGGCATTTATATGGCAGT
gi|5 : AGATCCATGTGCTAGTGATTATATATGACCTCACAAGCTCTCCTCAAGCGTT----TCAAAA-T----------G--TTGGCA-T--------C---T----TGTT-TTTCC--A-TTCTGCA--ATAACAAA---TAC-ATTTTAG-G-A---T-TA--T-T-----TGTTGT--GTCAA-------------CTGAGTA----------TGT------T---TA----TATCGATCATGCTACATGATCGAG-TATATA-TAAAGTAAAAT---CAT--------AAATAATTT-AGT-GG-TG--GCTGT----AA--TTTC-AAAAATATTTTTTTGGT---A-TG-AATTATG-TATAGACGT-G-A-T-TATA------CTA-CCAAGAACCATTTTGTGGCTTGTACATAGCAGTta
gi|6 : CACAGATCCATGTG----------TATA-GAGTGCAT---CTC-CCTCGAA--TT----TCAAAT-T-TT-G--GCAG--TTGGCG-TTAA----AC---A----T-TT-TTTTT--ATATTTTCAT-ATAACAAA---CAC-TCATTGG---AG--T-T---T-T-----T--T-T--CCCAA-------------TTAAATG----------CAT------TA--AA----TA-------------ATAATATAA-TA-GTA-T---GCATCAT---TAT-T--CA-GAAACAATGCAA-T-GA-TG--ACCGTGA--TA--TTTTGAAAAAGGGTTCTCTGATTTG--T---ATCAT--G---TATAT-A-AGT-TATATAAAACTTGCTCCAGGGTCACCTTGCTGCTTTGATGTGGC
gi|7 : GCGT---CTT-CTTTAAA--TA----ACAGCTCT-TT-GTTGCAG--TTGATG-TTTA----AC---T----A-TTATTTTC--A-AACTGCATTATAACAAA---TAG-TTTTTAT-T-AA--A-TA--A-T-----T--T-G--GCCAA-------------TTGCATGAATTGATTTTTATTTTCACT---AATTGTCA-------------ATAATTCAG-TA-GTGTT---ATAAAAG---TATA----T-AAAACAAGGC-AGT-GG-TG--TCTGTGT--AA--TTTCCAAAAAGAA----CTG-TTT---TG-AGTCAT-------AAAC-ATG-T-TTTTCAAAATC----------CTATTCTATGGCCTTTATGTCGCA
gi|8 : AG--TTGTTG-TTAA----ACATTT----T-TT-TTTTC--A-AACTGCAT-ATAACAGA---CAC-TTTTTGG-A-AG--T-TA--T-TATTTAT--T-T--GCCAATTATAATTTAGTTTTAAATG----------TAT------T---AA----CA-------------ATAATCTAG-AA-GTA-T---GCAAAAC---GATAA--CA-AAAACAATGC-ATT-GA-TG--CC--TGA--AACTTTTTGAAAAAGGGTTCTCTAATT----TG-AACCA---T---GTACTGA-A-T-TATATAAAACATGCCCCAGAGCCATCTTGCGGCTTTTATATGGCAGTcttggg
gi|9 : A--TT----TCAAAT-T-TT-A--GGATACTTGA-A-TTAA----AC---TGTTAT-TT-TCTTCCCA-AA-TGTAT-AAAACATG---CAC-TTTTTTA-ATAA--T-CC--T-T-----T--TGT--GCCA--------------TTAGA-------------AT------C---AA----TATG-----------ATAACGTCG-TA-TTA-T---GCAAAATAAAAATAAATCAGAAAATAGTGT-A---------------GA--AA--TAC--AGGAAGAGTTATCTAATGAGT-TG-AATCA---T---GTATT-G-A-T-TATATAtgg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TTATATACAAATATACCCAGAGTCATCTTGTTGTTTTTCTATCACATTTAAGAGTTTAAGA
Unaligned ( gi|15 ): GAATTGTGTAAGATTCTGCGCCAGAGTCATTTATGGCATTTTATTGCAGTTTGGTCTTTAA