lowQualScore : 1111111111111111111111111111
lowQualScore : 2222 1 1111 22 99999999999999999999999 0000000000000000000000000000 2 1 33 2 1 11 1 11111111111 1 11111 1 2 555555555555555555555555555 22222222222 11111111 1111 1 1 22222222222222222222222 111 22222222222 5555555 11111 111 11111 11
lowQualScore : 2 1111 5 5 3 7777 3 6 77 6 6 00000000000000000000000 5 5 5 3333333333333333333333333333 8 2 6 2 1 6 4 3 2 9 6 00 6 0 8 8 1 6 6 1 2 6 4 4 88 0 5 33333333333 1 0 00000 5 8 88 1 000000000000000000000000000 0 99 55 44444444444 1 4 44444444 0000 4 66666 2 4 6 3 1 2 0 77777 0 2 44444444444444444444444 0 4 7 4 111 2 66666666666 888 5 77 5555555 33 6 9999999 88888 33 3 1 777 5555 5 111 9 2 22222 22 2
lowQualScore : . .... . . . .... . . .. . . ....................... . . . ............................ . . . . . . . . . . . .. . . . . . . . . . . . . .. . . ........... . . ..... . . .. . ........................... . .. .. ........... . . ........ .... . ..... . . . . . . . ..... . . ....................... . . . . ... . ........... ... . .. ....... .. . ....... ..... .. . . ... .... . ... . . ..... .. .
lowQualScore : 0 2222 0 0 0 1111 0 7 55 7 0 66666666666666666666666 7 7 7 0000000000000000000000000000 3 2 7 8 0 3 8 2 2 2 7 33 7 0 3 3 3 3 7 7 2 0 7 2 88 0 0 44444444444 0 0 44444 2 2 66 0 777777777777777777777777777 7 55 55 22222222222 6 0 55555555 4444 0 00000 0 0 0 3 0 0 4 11111 1 3 99999999999999999999999 4 8 7 8 000 7 88888888888 999 7 77 3333333 99 6 3333333 99999 99 1 4 999 7777 3 888 0 9 55555 77 8
consensus : NNATATAT----GTGGCCGATGGTCGTCAG---ANCAATAACAATA-AGATCG-GT-GA--GGTTTNTT-------G-G-TTTA-ATGCAGT-GT-----TGTA----GTA-TCT--G--TATACATTATAAGACAAGAACCTGTAACGATACAGTACGATACATAAATTA-CAAGACATGAAAACAACGATTACGAC-AAAACATCAATCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTTC-TTA-AAT-GA-GA-ATNAA--AAT-ACAAGTAAT---TCCTTACCAGGCTGAT-CAG--TAAGTAGCGAA-----ACA----A-------TT--NT-TTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTANANG-TCNCT-ATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCATGCAACA------------------AAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATGT--A-TACA---A-------ACA---GA-T-ACACTGACATC--ACAACAC--AAACAATTGAAA-------CGGACTATAGA---TCTT-T-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTA-AAANTTAA-AATAC-C--TAATG--TGGCCAAAAGCAAGCCCTGA
Reference ( gi|5 ) : CAACATAT----GTGGCAGATGGTGGTTAT---ATCAAGAAC--TA-AGACCG-TT-GA--GGTTTTTTTTTTT--G-G-TTTA-ATGCAGTTGT-----TATACA-TGTACTCT--G--TTTACACTATAA-ACAAAAACCTGCAACGACACAGTACGATACATCAATTA-CAAGCAATGAAAACAACGATTACGAC-AAA-CTTCAAACAATTTCACGCGATACATAATTCACACATTTTACATAATACAAATACGGTT--TTA-AAT-GA-GA-ATGAA--AAT-ACAAATAAT---TGCTTACAAGGCTGATATAG--TAAGTAGCGAA-----ACA----A-------TT--AT-TTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTATATG-TCCTT-ATCG-T-TCAATTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCTGGAATTGGAAATTGTTAA-----TTTACCCATCATGCAATA------------------AAATCGCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATGC--A-TACA---A-------ACA---GA-T-GCACTGACATC--GC--TAC--AAACAATTGGAA-------CGGACTATAGA---TGTT-T-TTACACA--CGCCAGAGTAC----TTGTGACCAGGAGGCTTGCAACTA-AAATTTAA-AATAC-C--TAATG--TGGCCAAAAGCAAGCCCTGAAC
gi|4 : ATATAT----GTGGCCGATGGTGGTTAT---ATCAAGAAC--TC-AGATCG-GT-GAAGGGTTAATTTG-----G-G-TTTA-ATGCAGTTCT-----TATACG-------CT--G--TTTACACTAAAG-ACAAAAACCTGCAACAACAC-GTACGGTACATAAATTA-CAAGACATGAAAACAACGATTACGAC-AAA-CTTCAAACAATTTTACGCGATACA-AATTCATACATAGCACATGATACAATTACGGTT--TTA-AAT-GA-GA-ATGAA--AAT-ACAAATAAT---TGCTTACTACGCTGATTTAG--TAAGTAGCGAA-----ACA----AGACAATTTT--TT-TTA--TATTAGAAAA--TCTGTG-A--A---GTTA-AG---------------------TCCTT-ATCG-T-TCAACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTCTGGCGGGAATTGGAAATTGTTAA-----TTTACCTACCAT-----------------------------GCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATGT--A-TACA---A-------ACA---GA-T-ACATTGACATC--ACAAAAC--AAACAACTGAAA-------CGAATTATAGA---TCTT-T-TTA
gi|3 : tgagaacaactataattaaaataaaagctattacgtacattcaagtttattattatatgtacgtgtttagccacaacttaaaagaaaaagctagtatgataaattaatacagATATAT----GTGACCGATGGTCATCAG---AGCAATAACAATA-CGATCG-GT-GA--GGGATTTTAG-----G-G-TTTA-ATACAGT-GT-----T-------GTATTCT--GAATATATATTATGAGATCATAACCTGTAACAATACAGTACGATACAT-AATTAACAAGACATGAAAATAA-AATTAGGAC-AAAACATCAATCAATT-CACTCAGTATACAATCCAAACATTTCACAAAATACAAATACAGTTC-TTG-ACTAGATAA-ATCAA--ATT-ACAAGTAAT---TTATTACCAGGCTGAT-CAG--TAAGTAGTGAACAA--AAA----A-------AT--AT-G-A--TATGAGTAAA--TCT------------TCACAG--------ATTTTCTAAAGG-TTGCT-GTCGCT-TCGACTGGCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCAGGTGTTAGAAATTGTTAG-----TTTACCCATCATGTAACA------------------AAATCAGTAA--CATTACTCACTCATTCACTCAGTAACTTTGTGCAATACATACATGT--A-TATA---T-------ACA---GA-T-ACACTGACATC--ACAACAC--ACACAATTGAAA-------CGGACTATAGA---TCTA-T-TTATACA--TGCCAGAGTAC----TTGTGACTAGGAGGCTTGCAACTA-TGAATTAT-AATAC-T--TAATG--TGGCCAAAAGTAAGCCCTG
gi|1 : atataattgacattctgacacACATATAACGGTGACCGATAATCGTCAG---AGCAATAACAATA-TGATTG-GT-GA--G---TGGTTTCAG--G-G-TTTA-ATGCAGT-GT-----TGTA-----TTCTCA--G--TATATATTATAAGACAAGAACTTGAAATGATACAGTATAAAACATAAATTA-CAAAACATGAAAACAACGATTACGAC-AAAACATCAATCAATT-CACGCAAAATGCAATTCACACGTTTCACAAATTACAAATATAGTT--CCT-AGC-GA-GA--TAAATTAATTGCAAGTAGT---TTCCTGCCAGGCTAAT-CAG--CAAGTAGTGAA------CA----A-------TA--AA-TTA--TAATAAAAAACATATGTT-A--ATCTGCGC-AG--------ATTTTCTAAAGG-TTGCT-GTTGCT-TTGGCTGTCAGAATAAAA-GTACCTAGATGGTTACATTGGCGGAAATAAGAAATAGATAA-----TTTACACATCATGCAACA------------------AATTTGCTCACTCAACACTCACTCATTCGCTCAATAACGTCGTGCAATACATATATGT--A-TTTA---T-------ACC---GA-T-ACACTTACATC--ACAACAC--AAACAATTGAAA-------CCGATTATAGA---TATA-T-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAAGCTCGCAACTA-TAAATTAA-GATAC-C--CAATG--TGGCCAAAAGTAGGCCCTGgtc
gi|17 : atttttttatgtattttagtctcatccacacatgtacgagtataatgaacgggtATATAA----GTTGCCGATGGTCGTCAG---ATTAATGAC--TACAGATCG-GT-GATAGGTTTA---------GAG-TTTA-ATGCAGg
gi|6 : attttaatatgaatttgtatacacaaatagctacaggcctatgaatactgTGGTCATCAAAGCAATAACAATA-AGATCG-GT-GG--GGTTTTA--------G-GATTTA-ATGCAGT---------GTA----GTATTCTTAA--TATATATTATAAGACAAGAACCTGTAATGATACAGCACAATACGTAGTTTA-CAAGACATGAAAACAACAATTACGAT-AAAACATCAATCAAT-----GC---ACATGAT--ACACATTTCACACAATACAAATACTGTTCTTTA-GAA-AA-TACATTAA--AGT-ACAAGTAAT---TCCTTACCAAGCTGAT-CAG--CAAGTAGTGAA------CA----A-------TA--AAATGA--TATGAGCAAA--TCT-T----------TGC-AG--------ATTTTCTAAAGG-TAACT-GACGCT-TTAACTGTAAGAAGAAAG-GTGCCTAGATGGTTTGTTTGGCAGTAATTAGAAATGGTTAAATTAATTCACCCATCATACAACA------------------AAATCGCTCACTCATCACTCACTCATTTGCTCAATAACTTTGTGCAATACATACATG---A-TACATGTATAT----ACAAT-GA-T-ACACTAACTTC--ACCATGC--AAACA-----AA-------CAGACTATAGA---TCTA-T-TTATATA--TGTCAGAGTAA----TTGTAAC
gi|2 : ---ATCAAGAAC--TA-AGATCGGTTAGG--GGTTTATCG------G-G-TTTA-ATGCAGT-AT-----TATA---TG----CT--G--TTTCCACTATAG-ACAAAAAC--------------------------ATTA-CAAGACATGAAAACAACGGTTACGAC-AAA-CTTCAAACAATTTCACGCGATACATAATTCATACATTTCACATAATACAAATACGGTT--TTA-AAT-GA-GA--TAAA--AAT-ACAAATAAA---TGCTTACCAGTCTGAT-TAAT-TAAGAAGCCAAACAAGACA----A-------TT--TC-TTA--TATAAGAAGA--TCT-----------GTGA-AG--------ATTTTCTATTTG-TCCTC-ATCA-T-TCAACTATCAGAAGAAAA-GTACCTAGTTGGTTAGTTTGGCGGGAATTGAAAATTGTTAA-----TTTACCCGTCAAGCAATA------------------AAATTGCTCACTCATCACTCACTCATTCGCTCAATTAATT-GTACAAAACATACATGT--A-TACA---A-------ACA---GA-T-ACACTGACACC--ACAACAC--AAAACACTGAAA-------CGGACTCTAGA---TCTT-T-TTACTCC--TGCCAGAGTGA----TTGTAACCAGGAGGCTAGCAACT---AATTTCA-AATAC-C--CAATG--TGGCCAAAAGCAAGCCCTG
gi|12 : gtgtgtgtgtgcatgctggcgtgtttagtatgtgagtttgtaaatgtgaacctctcacatgttataatgaatttgtatatatcaTTTTAGG-G-TTTATATGCAGT-GTCTCCATGTATAGTATAATCA--A--TATACAAAACAAGACAAGAACCTGTTACGATGCAGTACAATACATAATTTA-CAAAATATGAAAACAACGATTACGACAAAA-CATCAATCAA-TTCACGCAATATACATGTCATTCATTTCACACAATGCAAATACTGTTCCTTACAAG-GT-CA-ATTAA--AAT-ACAAGTTAT---CCC------GGCTGAT-CAG--CAAATAGTGAA-----gtc
gi|7 : atacacgtgatctatggtcgttggagtaatttaaacgatcgtgtgagggaAGTACAAAAATAGTT--CTACAGT-AA-GA-A---A--AGTCACAAATAATAACTTCTTACCAGGCTGATTTAG--TAAGTAGAGAA-----ACA----AGACAT--TT--TT-TTA--CATTCGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTTCATG-TTCTTTATCA-T-TCAACTGTCAGAAAAAAA-GTGCCTAATTGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCATGCAATA------------------AAATCGCTCACTCATCACTCACCCCCTAACTCAATTACTTTGTGCAAAACATACATGT--A-TACA---A-------ACA---GA-T-ACACTGACACC--ACAACAC--AAACAATTGAAA-------CGGACTATAGA---CCTT-T-TTACACA--CACCAGAATAC----CTGTGACCAGGAGGCTCGCAACTA-AAATTTAA-AATActa
gi|9 : tcacattctctcaattgctttcaagaaattcACAGTT--TAC-AAT-AA--A-ATG------T-ATGAA--AC---TCCTTAACAGGCTGA-ATCGGTTAAATTATGAA-----AC--------------C--AT-TTAACTATCA--AAA--TC---G-A--A----T-A-AG--------ATTGTCT----G-TCC---ATTG-T-ACGACTGTCTAAAGAAAA-ATGCCGAGATGATTAGTTTGGCTAGAATTAGAAATTGTTAA-----TTCACTCACTATG
gi|11 : AGACTGAT-CAG--TAAGTAGC-AA-----ACG----A-------TG--A----AG-TAGTAAAAAA--TTGATGCATTA---GTAA-ATCTACTCATATTTTCTACACG-CTGCC-GTCG-CATTGACTGGCAAAAGAAAA-GTGCCTAG-------------------------ATGGTTAG-----TGTAGACATCATGCAACA------------------ACGTCG---AC--------CACCCATTCGCTCAATAACTT--------ACATTCATGT--A-TATAT--AT------ACG---AA-T-ACACTGACATC--ACAACAC--AAACAATTGAAA-------CAGACTATAGA---TTTA-T-TTATACA--TGCCAG-GTACTTAATTGTGAGCAGGGGGCTCGCAACTATAAA--TAATACTAC-C--CAATG--TGGCCAAAAGTAAGCCttcattacatacacgttacatgctgagtacactaatatcacaatataaacaattgaaagagactataaaattaaaagtgtcagagtgcaggtattgaggaggcacgcactcagaaataaaatacactgtaatgactggaaaagtaaacctaggtcac
gi|8 : ccCTGATTTAG--TAAGTAGCGAA-----ACA----AGACA---TT--TT-TTA--TATTAGAAAA--TCTGTG-G--A---GTGA-AG--------ATTTTCTATATGATCTTT-ATCG-T-TCAACTGTCAGAAGAAAAAGT---T-GATGGTGAGTT-GGCGGGAATCGGAAATTGTTAA-----TTTACCCATCATGCAATATTAACCCCCTATGTAATAAAATCGCTTACTCATCACTCACTCATTCGATCAGTTACTTTGTGCAAAACATACGTGT--A-TACA---A-------TCA---GA-T-ACACTGACATC--ACATCAC--AAACAATTGAAAATTGAAACGGACTATAGA---TCTT-T-TTACACA--CGCCACAGTAC----TTGTGACCAACAGGATCGCAACTA-AAATTTAA-AATAC-C--TTATA--TGGCTAAAAGCACGCTCTG
gi|10 : gtG--CAAGTAGTGAA-----ACACGACA-------TTTTGT-TTA--TATTAGAAGT--TCTGTG-A--A---GTGA-AG--------ATTTTCTATATG-TTTTT-ATCG-T-TCAACTGTCAGAAGAAAA-GT-----GAT--TT-GTTTGGCGGGAATTGGAAATTGTTAA-----TTT-----------------------------------------CACTGATCACTCACTCATTCGCTCAATTACTTCGTGC-AAGCATACATGT--A-TACA---A-------ACA---GA-T-ACACTGACATC--AA--AACAAAAACAATACAAA-------CGGACCATAAA---TCTT-TGTTACACA--TGCCAGAGTAT----TTGTGACCAGGAGGCTCGCAACTA-AAGTTTAA-AATAC-T--TAATG--TGGCAAAAAGCAAGCCCTGgtc
gi|14 : ttACTGTCAGAAGAAAA-GTGTCAGGATGTTTACTTTGGCGGGAATTAGAAATTGTTTA-----TTCACTCATCATGTAACA------------------A-----------CATCACTCA-------AC-CAATAAATACGCGCATTACATACCTT-----TACA---T-------ACA---GATT-ATGCTAACACC--ATAACAC--AAACAATTGAAA-------TAGACTA---------TT-C-CCATATG--TATCAGAGTGC----TTGCAATCACGAGGCTCGCAACTG-CAA--TAA-A--------TAATGCCCGG--AAAAGCAAGTCTTGAgtcac
gi|13 : gACTGTCAGAAGAGAT-GTGTCGATATTGTCAGTCTGGCTCGAATTAAAAAGTGTTAG-----CTCACACATCATGCAATA------------------TAATtca
gi|19 : caaaagattatgacatcaagcatatcAGAAAGTTAGTTTGGCATAAGTTTGAGACTATTAA-----TTCACCTATCAT---------------------------TTGCTCATTCGCCA---ACACA------CAATAAC----TGCATATTATACATACAGA-TACA---tatattgggtacactaacatcacaacacaaacaattgaaacagaatgtaaagttatttatgcatgccagaatgcgtgtgaccaggaggcttgcatatataaataccatatacaatgactagaaaagtaagcattggtcac
gi|15 : aATGGTTAGTTTG-------TTGGGAATTGTTAA-----TTTATCCATCATGCAATA------------------AAACATCTCATTTATCATTCACTCATTCGCTCAGTTATTTAGTGCAATACATACATGT--A-TACA---A-------ACA---GA-T-ACACTGACATCAAAA--TAC--AAGCATTTGAAA-------CGGACTATAAATCTTTTT-T-TTATATAATTGCCAGAGTAC----TTGTGAC----------------------TTAA-AATAC-C--TAATG--TGGCCAAAAGCAAGCCCTG
gi|9 : ATTCACTCA----CTATGTTCATTACATACACGT----TACA---T-------GCT---GAGT-ACACTAATATC--ACAATAT--AAACAATTGAAA-------GAGACTATAAA--------A-TTAAAAG--TGTCAGAGTGC----AGGTATTGAGGAGGCACGC-ACTC-AGAAATAA-AATACACTGTAATGACTGG--AAAAGTAAACCgt
gi|13 : acagtttacaataaaatgtatgaaactccttaacaggctgaatcggttaaattatgaaaccatttaactatcaaaatcgaataagattgtctgtccattgtacgactgtctaaagaaaaatgccgagatgattagtttggctagaattagaaattgttaACAT-CATGC--AATATA---ATT-----ATATTGGG-T-ACACTAACATC--ACAACAC--AAACAATTGAAA-------CAGAATGTAAA----GTTAT-TTATGCA--TGCCAGAATGC----GTGTGACCAGGAGGCTTGCATATATAAATACCA-TATAC-----AATGACTAG--AAAAGTAAGCtaggtcac
gi|16 : caaaagattatgacatcaagcatatcactgtcagaagagatgtgtcgatattgtcagtctggctcgaattaaaaagtgttagctcacACATGC--A-CACA---ATGAGTGAGCA---AA-TAGCAC-AACAT------------AAACAATTGAAA-------CTGACTATAAA---attggtcac
gi|20 : cagtgtgaatatcaagataaacgagctgtgatgttttctttggtagacatttgagctaatcaaataatcattaatccgtaccatcaaatataccacgaCCAGAATAC----GTGTGATCAAGAGGCTCGCAACTA-TAAATTAT-GATAC-C---AATA--TATTCAAAAGTAAGCCCTGatta
gi|21 : taCAGAGTGC----ATGTGACCAGAAGGCTCGCAACT--AAATTT-A-AAT---------TG--TGGCCAAAAGCAAGCCCTGgtca
gi|22 : TGC----TTGTAGCCAGGAGGCTCGCAACTA-TAAATTAT-AATAC-A--CAGTG--TGACCGAAAGTAATCCCTGgtca
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): AGCAAACAATGATAACAGCTTGTGGAATTATATAAATACTAGTATGTTATTGTGCGTGTATCTAGTAGGTTCGCAACTATAAATATAATACACAATGACTGAAAAATAAGACTTGG
Unaligned ( gi|23 ): AAGCCAAATGCCTACTTTACCATACTGGCAATAAATT
Alignments
lowQualScore : 22 33333333 1111111 44444444444 1 11 111111 111 44444444444444 11111111111111111111111 1 111111111111111111 11111111
lowQualScore : 4 1 888 77 55 5 66 88888 66 66 55555555 5 5 5 5 8888888 4 88888888888 2 77 2 1 0 0 2 1 0 2 2 2 2 5 8 55 2 1 2 33 111111 2 5555 1 6 66 8 777 3 3 111 6 0 555 7777 55555555555555 88 55 2 66666666666666666666666 2 2 3 6666 0 3 3 0 1 66666 0 999999999999999999 2 22 111 0 1 3 1 66666 666 33 2 2 8888888 555 2 2 33 5555 8888 2 33333333 77 33
lowQualScore : . . ... .. .. . .. ..... .. .. ........ . . . . ....... . ........... . .. . . . . . . . . . . . . . .. . . . .. ...... . .... . . .. . ... . . ... . . ... .... .............. .. .. . ....................... . . . .... . . . . . ..... . .................. . .. ... . . . . ..... ... .. . . ....... ... . . .. .... .... . ........ .. ..
lowQualScore : 5 0 888 66 22 0 99 55555 99 99 88888888 0 0 0 7 6666666 0 11111111111 1 99 1 1 1 4 4 4 4 1 0 1 1 0 4 44 4 0 2 88 555555 0 5555 9 9 11 9 888 7 6 888 7 1 888 7777 99999999999999 66 00 8 88888888888888888888888 3 3 6 0000 9 6 1 2 5 77777 9 777777777777777777 2 11 888 4 0 7 9 22222 444 77 7 7 7777777 000 0 9 99 3333 8888 7 11111111 99 99
consensus : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--GTT--TTTN-----G-G-TTTA-ATGCAGT-GT-------TGTA----TA-T---CNG--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAA---ACA----AG-C----T-TNT--TTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTA-AAATAC-C-----TAATG--TGGCC--AAAAGCAAGCCCTGA
Reference ( family-2193 ) : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--GTT--TNTT-----G-G-TTTA-ATGCAGT-GT-------TGTA---GTA-T---CTG--TATACATTATAAGACAAGAACCTGTAACGATACAGTACGATACATAAATTACAAGACATGAAAACAACGATTACGACAAAACATCAATCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TCCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAA---ACA----A-------T-TNT--TTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTANANG-T-CNCTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTAAAANTTA-AAATAC-C-----TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|1 : GTGACCGATAATCGTCAGAGCAAT---AACAATA-TGATTG-GT--G--A--GTGGTT--TCAG-----G-G-TTTA-ATGCAGT-GT-------TGTA---TTC-T---CAG--TATATATTATAAGACAAGAACTTGAAATGATACAGTATAAAACATAAATTACAAAACATGAAAACAACGATTACGACAAAACATCAATCAATT-CACGCAAAATGCAATTCACACGTTTCACAAATTACAAATATAGTT-CCT----A-G-C-GA-GA-TAAATTAATTGCAAGTAGT---TTCCTGCCAGGCTAA-T-C-AGC-AAGTAGTGAA----CA----A-------T-AAA--TTA--TAATAAAAAACATATGTT-A--ATCTGCGC-AG--------ATTTTCTAAAGG-T-TGCTGTTGCT-TTGGCTGTCAGAATAAAA-GTACCTAGATGGTTACATTGGCGGAAATAAGAAATAG-----ATAATTTACACATCAT------------------GCAACAAATTTGCTCACTCAACACTCACTCATTCGCTCAATAACGTCGTGCAATACATATATG-----TATTTA-T-ACC--GA-T-ACACTTACATCACAACACAAAC-------AATTGAAACCGATTATAGATA---TAT-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAAGCTCGCAACTATAAATTA-AGATAC-C-----CAATG--TGGCC--AAAAGTAGGCCCTG
gi|10 : atttttttatgtattttagtctcatccacacatgtacgagtataatgaacgggtacatataacgGC-AAGTAGTGAA---ACACGACA-------T-TTTGTTTA--TATTAGAAGT--TCTGTG-A--A---GTGA-AG--------ATTTTCTATATG-T-TTTTATCG-T-TCAACTGTCAGAAGAAAA-GT-----GAT--TT-GTTTGGCGGGAATTGGAAATTG-----TTAATT-----------------------------------------TCACTGATCACTCACTCATTCGCTCAATTACTTCGTGCAAG-CATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAACAAAAAC-------AATACAAACGGACCATAAATC---TTTGTTACACA--TGCCAGAGTAT----TTGTGACCAGGAGGCTCGCAACTAAAGTTTA-AAATAC-T-----TAATG--TGGCA--AAAAGCAAGCCCTGg
gi|11 : ttCCAGACTGA-T-C-AGT-AAGTAGC-AA---ACG----A-------T-GA-----AG-TAGTAAAAAA--TTGATGCATTA---GTAA-ATCTACTCATATTTTCTACACG-C-TGCCGTCG-CATTGACTGGCAAAAGAAAA-GTGCCTAGATGGTTAG--TG--------TAGA--------------------CATCAT------------------GCAACAACGTCG---AC--------CACCCATTCGCTCAATAACTT--------ACATTCATG-----TATATATATACG--AA-T-ACACTGACATCACAACACAAAC-------AATTGAAACAGACTATAGATT---TAT-TTATACA--TGCCAG-GTACTTAATTGTGAGCAGGGGGCTCGCAACTATAAATAA-TACTAC-C-----CAATG--TGGCC--AAAAGTAAGCCgtcac
gi|12 : ATACACGTGATCTATGGTCGTTGGAGTAATTTAAAC------GATCGTGT--G--A--G--GGA--TTTTAG---G-G-TTTATATGCAGT-GTCTCCATGTATA---GTA-TAATCAA--TATACAAAACAAGACAAGAACCTGTTACGATGCAGTACAATACATAATTTACAAAATATGAAAACAACGATTACGACAAAACATCAATCAA-TTCACGCAATATACATGTCATTCATTTCACACAATGCAAATACTGTTCCTT----ACAAG-GT-CAATTAA--AAT-ACAAGTTAT---CCC------GGCTGA-T-C-AGC-AAATAGTGAA---
gi|13 : ACTGTCAGAAGAGAT-GTGTCGATATTGTCAGTCTGGCTCGAATTAAAAAGTG-----TTAGCTCACACATCAT------------------GCAATATAATcta
gi|13 : caaaagattatgacatcaagcatatcTTAGCTCA--CACATCATGCAATATA---AT------TATAT-----TG--GG-T-ACACTAACATCACAACACAAAC-------AATTGAAACAGAATGTAAAGT---TAT-TTATGCA--TGCCAGAATGC----GTGTGACCAGGAGGCTTGCA--TA-----TATAAATAC-CATATACAATGACTAG----AAAAGTAAGCtatattgggtacactaacatcacaacacaaacaattgaaacagaatgtaaagttatttatgcatgccagaatgcgtgtgaccaggaggcttgcatatataaataccatatacaatgactagaaaagtaagcattggtcac
gi|14 : caaaagattatgacatcaagcatatcactgtcagaagagatgtgtcgatattgtcagtctggctcgaattaaaaagtgGACTGTCAGAAGAAAA-GTGTCAGGATGTTTACTTTGGCGGGAATTAGAAATTG-----TTTATTCACTCATCAT------------------GTAACAA-----------CATCACTCA-------AC-CAATAAATACGCGCATTACATACCT------T-TACA-T-ACA--GA-TTATGCTAACACCATAACACAAAC-------AATTGAAATAGACTA---------TTC-CCATATG--TATCAGAGTGC----TTGCAATCACGAGGCTCGCAACTGCAA--TA-AA-----------TAATG--C--CCGGAAAAGCAAGTCTTGAattggtcac
gi|15 : ATGGTTAGTTTG-------TTGGGAATTG-----TTAATTTATCCATCAT------------------GCAATAAAACATCTCATTTATCATTCACTCATTCGCTCAGTTATTTAGTGCAATACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAATACAAGC-------ATTTGAAACGGACTATAAATCTTTTTT-TTATATAATTGCCAGAGTAC----TTGTGAC---------------------TTA-AAATAC-C-----TAATG--TGGCC--AAAAGCAAGCCCTGtca
gi|16 : ACATG-----CACACA-A-TGA--G--T-GAGCAAATAGCACAACATAAAC-------AATTGAAACTGACTATAAAgt
gi|17 : cagtgtgaatatcaagataaacgagctgtgatgttttctttggtagacatttgagctaatcaaataatcattaatccgtaccatcaaatataccacgaATATAAGTTGCCGATGGTCGTCAGATTAAT---GAC--TACAGATCG-GT--GATA--G--GTT--TA-------GAG-TTTA-ATGCAGatta
gi|19 : attttaatatgaatttgtatacacaaatagctacaggcctatgaatactgAGAAAGTTAGTTTGGCATAAGTTTGAGACTA-----TTAATTCACCTATCAT---------------------------TTGCTCATTCGCCA---ACACA------CAATAACTGCATATTATACATACA-G------ATACA-
gi|2 : aTCA-ATCAAG---AAC--TA-AGATCG-GTTAG--G--G--GTT--TATC-----G-GGTTTA-ATGCAGT-AT-------TATA----TG-----CTG--TTTCCACTATA-GACAAAAAC--------------------------ATTACAAGACATGAAAACAACGGTTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCATACATTTCACATAATACAAATACGGTT--TT----A-AAT-GA-GA-TAAA--AAT-ACAAATAAA---TGCTTACCAGTCTGA-T-T-AATTAAGAAGCCAA---ACA----AGACAA--T-TTC--TTA--TATAAGAAGA--TCTGTG-A--A---G--------------ATTTTCTATTTG-T-CCTCATCA-T-TCAACTATCAGAAGAAAA-GTACCTAGTTGGTTAGTTTGGCGGGAATTGAAAATTG-----TTAATTTACCCGTCAA------------------GCAATAAAATTGCTCACTCATCACTCACTCATTCGCTCAATTAATT-GTACAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAA-------CACTGAAACGGACTCTAGATC---TTT-TTACTCC--TGCCAGAGTGA----TTGTAACCAGGAGGCTAGCAACT--AATTTC-AAATAC-C-----CAATG--TGGCC--AAAAGCAAGCCCTG
gi|20 : gtgtgtgtgtgcatgctggcgtgtttagtatgtgagtttgtaaatgtgaacctctcacatgttataatgaatttgtatata--TACCAGAATAC----GTGTGATCAAGAGGCTCGCAACTATAAATTA-TGATAC-C------AATA--TATTC--AAAAGTAAGCCCTGgtc
gi|21 : CAGAGTGC----ATGTGACCAGAAGGCTCGCAACTAAA--TTT-AAAT------------TG--TGGCC--AAAAGCAAGCCCTGgtca
gi|22 : TGC----TTGTAGCCAGGAGGCTCGCAACTATAAATTA-TAATAC-A-----CAGTG--TGACC--GAAAGTAATCCCTGgtca
gi|3 : ATATATGTGACCGATGGTCATCAGAGCAAT---AACAATA-CGATCG-GT--G--A--G--GGA--TTTTAG---G-G-TTTA-ATACAGT-GT-------TGTA----T--T---CTGAATATATATTATGAGATCATAACCTGTAACAATACAGTACGATACATAATTAACAAGACATGAAAATAA-AATTAGGACAAAACATCAATCAATT-CACTCAGTATACAATCCAAACATTTCACAAAATACAAATACAGTT-CTT----G-ACTAGATAAATCAA--ATT-ACAAGTAAT---TTATTACCAGGCTGA-T-C-AGT-AAGTAGTGAACAAAAA----A-------A-TAT--G-A--TATGAGTAAA--TCT------------TCACAG--------ATTTTCTAAAGG-T-TGCTGTCGCT-TCGACTGGCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCAGGTGTTAGAAATTG-----TTAGTTTACCCATCAT------------------GTAACAAAATCAGTAAC--ATTACTCACTCATTCACTCAGTAACTTTGTGCAATACATACATG-----TATATA-T-ACA--GA-T-ACACTGACATCACAACACACAC-------AATTGAAACGGACTATAGATC---TAT-TTATACA--TGCCAGAGTAC----TTGTGACTAGGAGGCTTGCAACTATGAATTA-TAATAC-T-----TAATG--TGGCC--AAAAGTAAGCCCTG
gi|4 : atataattgacattctgacacATATATGTGGCCGATGGTGGTTATATCAAG---AAC--TC-AGATCG-GT--G--AAGG--GTTAATTTG-----G-G-TTTA-ATGCAGT-TC-------T-TA----TA-CG--CTG--TTTACACTA-AAGACAAAAACCTGCAACAACAC-GTACGGTACATAAATTACAAGACATGAAAACAACGATTACGACAAA-CTTCAAACAATTTTACGCGATACA-AATTCATACATAGCACATGATACAATTACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACTACGCTGA-T-TTAGT-AAGTAGCGAA---ACA----AGACAATTT-TTT--TTA--TATTAGAAAA--TCTGTG-A--A---GT---------------------TAAG-T-CCTTATCG-T-TCAACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTCTGGCGGGAATTGGAAATTG-----TTAATTTACCTACCAT------------------GC-----------TCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACATTGACATCACAAAACAAAC-------AACTGAAACGAATTATAGATC---TTT-TTAgtc
gi|5 : tgagaacaactataattaaaataaaagctattacgtacattcaagtttattattatatgtacgtgtttagccacaacttaaaagaaaaagctagtatgataaattaatacagACATATGTGGCAGATGGTGGTTATATCAAG---AAC--TA-AGACCG-TT--G--A--G--GTT--TTTTTTTTTG-G-TTTA-ATGCAGTTGT-------TATACATGTACT---CTG--TTTACACTATAA-ACAAAAACCTGCAACGACACAGTACGATACATCAATTACAAGCAATGAAAACAACGATTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCACACATTTTACATAATACAAATACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACAAGGCTGA-TAT-AGT-AAGTAGCGAA---ACA----A-------T-TAT--TTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTATATG-T-CCTTATCG-T-TCAATTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCTGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----CATACA-A-ACA--GA-T-GCACTGACATCGC--TACAAAC-------AATTGGAACGGACTATAGATG---TTT-TTACACA--CGCCAGAGTAC----TTGTGACCAGGAGGCTTGCAACTAAAATTTA-AAATAC-C-----TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|6 : caTGGTCATCAAAGCAAT---AACAATA-AGATCG-GT--G--G--G--GTT--TTAG-----G-A-TTTA-ATGCAGT-GT-------AGTA---TTC-T---TAA--TATATATTATAAGACAAGAACCTGTAATGATACAGCACAATACGTAGTTTACAAGACATGAAAACAACAATTACGATAAAACATCAATCAA-TGCACATGATAC---------ACATTTCACACAATACAAATACTGTT-CTTTAGAA-AAT----ACATTAA--AGT-ACAAGTAAT---TCCTTACCAAGCTGA-T-C-AGC-AAGTAGTG-A---ACA----A-------TAAAA--TGA--TATGAGCAAA--TCT-T----------TGC-AG--------ATTTTCTAAAGG-T-AACTGACGCT-TTAACTGTAAGAAGAAAG-GTGCCTAGATGGTTTGTTTGGCAGTAATTAGAAATGGTTAAATTAATTCACCCATCAT------------------ACAACAAAATCGCTCACTCATCACTCACTCATTTGCTCAATAACTTTGTGCAATACATACATGATACATGTATA-T-ACAATGA-T-ACACTAACTTCACCATGCAAAC------------AAACAGACTATAGATC---TAT-TTATATA--TGTCAGAGTAA----TTGTAACac
gi|7 : AGTACAAAAATAGTT-CTA----C-AGT-AA-GAA---A--AGTCACAAATAATAACTTCTTACCAGGCTGA-T-TTAGT-AAGTAGAGAA---ACA----AGACAT--T-TTT--TTA--CATTCGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTTCATG-TTCTTTATCA-T-TCAACTGTCAGAAAAAAA-GTGCCTAATTGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACCCCCTAACTCAATTACTTTGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAC-------AATTGAAACGGACTATAGACC---TTT-TTACACA--CACCAGAATAC----CTGTGACCAGGAGGCTCGCAACTAAAATTTA-AAATA
gi|8 : tcacattctctcaattgctttcaagaaattcCTGA-T-TTAGT-AAGTAGCGAA---ACA----AGACA---T-TTT--TTA--TATTAGAAAA--TCTGTG-G--A---GTGA-AG--------ATTTTCTATATGAT-CTTTATCG-T-TCAACTGTCAGAAGAAAAAGT---T-GATGGTGAGTT-GGCGGGAATCGGAAATTG-----TTAATTTACCCATCATGCAATATTAACCCCCTATGTAATAAAATCGCTTACTCATCACTCACTCATTCGATCAGTTACTTTGTGCAAAACATACGTG-----TATACA-A-TCA--GA-T-ACACTGACATCACATCACAAACAATTGAAAATTGAAACGGACTATAGATC---TTT-TTACACA--CGCCACAGTAC----TTGTGACCAACAGGATCGCAACTAAAATTTA-AAATAC-C-----TTATA--TGGCT--AAAAGCACGCTCTG
gi|9 : gtAAT-AA--AAT-GTATGAAAC---TCCTTAACAGGCTGAAT-C-GGTTAAATTATGAA---ACC----A-------T-T-----TAACTATCA--AAA--TC---G-A--A----T-A-AG--------ATTGTCT----G-T-CC--ATTG-T-ACGACTGTCTAAAGAAAA-ATGCCGAGATGATTAGTTTGGCTAGAATTAGAAATTG-----TTAATTCACTCACTAT------------------Ggtc
gi|9 : acagtttacTCACTCACTATGTTCATTACATACACG-----T-TACA-T-GCT--GAGT-ACACTAATATCACAATATAAAC-------AATTGAAAGAGACTATAAA-------A-TTAAAAG--TGTCAGAGTGC----AGGTATTGAGGAGGCACGC-ACTCAGAAATA-AAATACACTG---TAATGACTGG----AAAAGTAAACCttcattacatacacgttacatgctgagtacactaatatcacaatataaacaattgaaagagactataaaattaaaagtgtcagagtgcaggtattgaggaggcacgcactcagaaataaaatacactgtaatgactggaaaagtaaacctaggtcac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGCAAACAATGATAACAGCTTGTGGAATTATATAAATACTAGTATGTTATTGTGCGTGTATCTAGTAGGTTCGCAACTATAAATATAATACACAATGACTGAAAAATAAGACTTGG
Unaligned ( gi|23 ): AAGCCAAATGCCTACTTTACCATACTGGCAATAAATT
Alignments
lowQualScore : 22 2222222222222222 11111 555555555555555555555 1 11 111111 111 666666666666 11111111111111111111111 1 111111111111111111
lowQualScore : 4 1 888 77 55 5 66 88888 66 0000000000000000 5 5 5 44444 1 444444444444444444444 1 0 0 0 2 1 0 1 3 2 1 1 5 8 55 2 1 2 33 111111 2 5555 1 6 66 8 777 2 3 111 6 0 44 3 7777 222222222222 55 55 2 66666666666666666666666 2 2 3 3 11 0 3 3 1 66666 999999999999999999 2 22 111 0 1 3 1 66666 666 33 2 2 8888888 555 2 2 0 33 5555 5 4 77777 77 33
lowQualScore : . . ... .. .. . .. ..... .. ................ . . . ..... . ..................... . . . . . . . . . . . . . . .. . . . .. ...... . .... . . .. . ... . . ... . . .. . .... ............ .. .. . ....................... . . . . .. . . . . ..... .................. . .. ... . . . . ..... ... .. . . ....... ... . . . .. .... . . ..... .. ..
lowQualScore : 5 0 888 66 22 0 99 55555 99 0000000000000000 0 0 7 33333 7 111111111111111111111 0 4 1 4 4 4 4 4 0 0 0 0 0 4 44 4 0 2 88 555555 0 5555 9 9 11 9 888 6 6 888 7 1 66 3 7777 444444444444 00 00 8 88888888888888888888888 3 3 6 6 99 9 6 1 5 77777 777777777777777777 2 11 888 4 0 7 9 22222 444 77 7 7 7777777 000 0 9 5 99 3333 5 5 88888 99 99
consensus : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TNG-----G-GTTTA-ATGCAGT-GT-----TGTAT-A------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGA--A-AC----AAGA-------TTNTTTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
Reference ( family-2193 ) : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TTN-----G-GTTTA-ATGCAGT-GT-----TGTAT-A------T-----CN--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGA--A-AC----AAG-----C--TTNTTTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|1 : GTGACCGATAATCGTCAGAGCAAT---AACAATA-TGATTG-GT--G--A--GTGG--TT--T-CAG-----G-GTTTA-ATGCAGT-GT-----TGTATTC------T-----CA--G--TATATATTATAAGACAAGAACTTGAAATGATACAGTATAAAACATAAATTACAAAACATGAAAACAACGATTACGACAAAACATCAATCAATT-CACGCAAAATGCAATTCACACGTTTCACAAATTACAAATATAGTT-CCT----A-G-C-GA-GA-TAAATTAATTGCAAGTAGT---TTCCTGCCAGGCTAA-T-C-AGC-AAGTAGTGA--A--C----AA---------TAAATTA--TAATAAAAAACATATGTT-A--ATCTGCGC-AG--------ATTTTCTAAAGG-T-TGCTGTTGCT-TTGGCTGTCAGAATAAAA-GTACCTAGATGGTTACATTGGCGGAAATAAGAAATAG-----ATAATTTACACATCAT------------------GCAACAAATTTGCTCACTCAACACTCACTCATTCGCTCAATAACGTCGTGCAATACATATATG-----TATTTA-T-ACC--GA-T-ACACTTACATCACAACACAAAC-------AATTGAAACCGATTATAGATA---TAT-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAAGCTCGCAACTATAAATTAAGATAC-C--CAATG--TGGCC--AAAAGTAGGCCCTG
gi|10 : atttttttatgtattttagtctcatccacacatgtacgagtataatgaacgggtacatataacgGC-AAGTAGTGA--A-AC----ACGACAT-T--TTGTTTA--TATTAGAAGT--TCTGTG-A--A---GTGA-AG--------ATTTTCTATATG-T-TTTTATCG-T-TCAACTGTCAGAAGAAAA-GTG-----AT--TT-GTTTGGCGGGAATTGGAAATTG-----TTAATTT-----------------------------------------CACTGATCACTCACTCATTCGCTCAATTACTTCGTGCAAG-CATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAACAAAAAC-------AATACAAACGGACCATAAATC---TTTGTTACACA--TGCCAGAGTAT----TTGTGACCAGGAGGCTCGCAACTAAAGTTTAAAATAC-T--TAATG--TGGCA--AAAAGCAAGCCCTGg
gi|11 : ttCCAGACTGA-T-C-AGT-AAGTAGC-A--A-ACGATGAAG-----------------TAGTAAAAAA--TTGATGCATTA---GTAA-ATCTACTCATATTTTCTACACG-C-TGCCGTCG-CATTGACTGGCAAAAGAAAA-GTGCCTAGATGGTTAG--TG--------TAGA--------------------CATCAT------------------GCAACAACGTCG---AC--------CACCCATTCGCTCAATAACTT--------ACATTCATG-----TATATATATACG--AA-T-ACACTGACATCACAACACAAAC-------AATTGAAACAGACTATAGATT---TAT-TTATACA--TGCCAG-GTACTTAATTGTGAGCAGGGGGCTCGCAACTATAAATAATACTAC-C--CAATG--TGGCC--AAAAGTAAGCCgtcac
gi|12 : ATACACGTGATCTATGGTCGTTGGAGTAATTTAAAC------GATCGTGT--G--A--G--GGATT--T-TAG-----G-GTTTATATGCAGT-GTCTCCATGTAT-AGTATAAT-----CA--A--TATACAAAACAAGACAAGAACCTGTTACGATGCAGTACAATACATAATTTACAAAATATGAAAACAACGATTACGACAAAACATCAATCAA-TTCACGCAATATACATGTCATTCATTTCACACAATGCAAATACTGTTCCTT----ACAAG-GT-CAATTAA--AAT-ACAAGTTAT---------CCCGGCTGA-T-C-AGC-AAATAGTGA--A-
gi|13 : ACTGTCAGAAGAGAT-GTGTCGATATTGTCAGTCTGGCTCGAATTAAAAAGTG-----TTAGCTCACACATCAT------------------GCAATATAATcta
gi|13 : caaaagattatgacatcaagcatatcTTAGCTCA--CACATCATGCAATATA---AT------TATAT-----TG--GG-T-ACACTAACATCACAACACAAAC-------AATTGAAACAGAATGTAAAGT---TAT-TTATGCA--TGCCAGAATGC----GTGTGACCAGGAGGCTTGCATATATAAA-TACCATAT-A--CAATGACTAG----AAAAGTAAGCtatattgggtacactaacatcacaacacaaacaattgaaacagaatgtaaagttatttatgcatgccagaatgcgtgtgaccaggaggcttgcatatataaataccatatacaatgactagaaaagtaagcattggtcac
gi|14 : caaaagattatgacatcaagcatatcactgtcagaagagatgtgtcgatattgtcagtctggctcgaattaaaaagtgGACTGTCAGAAGAAAA-GTGTCAGGATGTTTACTTTGGCGGGAATTAGAAATTG-----TTTATTCACTCATCAT------------------GTAACAA-----------CATCACTCA-------AC-CAATAAATACGCGCATTACATACCT------T-TACA-T-ACA--GA-TTATGCTAACACCATAACACAAAC-------AATTGAAATAGACTA---------TTC-CCATATG--TATCAGAGTGC----TTGCAATCACGAGGCTCGCAACTGCAA--TAAA--------TAATG--C--CCGGAAAAGCAAGTCTTGAattggtcac
gi|15 : ATGGTTAGTTTG-------TTGGGAATTG-----TTAATTTATCCATCAT------------------GCAATAAAACATCTCATTTATCATTCACTCATTCGCTCAGTTATTTAGTGCAATACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAATACAAGC-------ATTTGAAACGGACTATAAATCTTTTTT-TTATATAATTGCCAGAGTAC----TTGTGAC---------------------TTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGtca
gi|16 : ACATG-----CACACA-A-TGA--G--T-GAGCAAATAGCACAACATAAAC-------AATTGAAACTGACTATAAAgt
gi|17 : cagtgtgaatatcaagataaacgagctgtgatgttttctttggtagacatttgagctaatcaaataatcattaatccgtaccatcaaatataccacgaATATAAGTTGCCGATGGTCGTCAGATTAAT---GAC--TACAGATCG-GT--GATA--G--G------T-TTA-----GAGTTTA-ATGCAGatta
gi|19 : attttaatatgaatttgtatacacaaatagctacaggcctatgaatactgAGAAAGTTAGTTTGGCATAAGTTTGAGACTA-----TTAATTCACCTATCAT---------------------------TTGCTCATTCGCCA---ACACA------CAATAACTGCATATTATACATACA-G------ATACA-
gi|2 : aTCA-ATCAAG---AAC--TA-AGATCG-GTTAG--G--G--G--TT--TATCG-----G-GTTTA-ATGCAGT-AT-----TATAT-G------------CT--G--TTTCCACTATA-GACAAAA----------------------ACAT----TACAAGACATGAAAACAACGGTTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCATACATTTCACATAATACAAATACGGTT--TT----A-AAT-GA-GA-TAAA--AAT-ACAAATAAA---TGCTTACCAGTCTGA-T-T-AATTAAGAAGCCA--A-AC----AAGA----CAATTTCTTA--TATAAGAAGA--TCTGTG-A-----------AG--------ATTTTCTATTTG-T-CCTCATCA-T-TCAACTATCAGAAGAAAA-GTACCTAGTTGGTTAGTTTGGCGGGAATTGAAAATTG-----TTAATTTACCCGTCAA------------------GCAATAAAATTGCTCACTCATCACTCACTCATTCGCTCAATTAATT-GTACAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAA-------CACTGAAACGGACTCTAGATC---TTT-TTACTCC--TGCCAGAGTGA----TTGTAACCAGGAGGCTAGCAACT--AATTTCAAATAC-C--CAATG--TGGCC--AAAAGCAAGCCCTG
gi|20 : gtgtgtgtgtgcatgctggcgtgtttagtatgtgagtttgtaaatgtgaacctctcacatgttataatgaatttgtatata--TACCAGAATAC----GTGTGATCAAGAGGCTCGCAACTATAAATTATGATAC-C---AATA--TATTC--AAAAGTAAGCCCTGgtc
gi|21 : CAGAGTGC----ATGTGACCAGAAGGCTCGCAACTA-AATTT-AAAT---------TG--TGGCC--AAAAGCAAGCCCTGgtca
gi|22 : TGC----TTGTAGCCAGGAGGCTCGCAACTATAAATTATAATAC-A--CAGTG--TGACC--GAAAGTAATCCCTGgtca
gi|3 : ATATATGTGACCGATGGTCATCAGAGCAAT---AACAATA-CGATCG-GT--G--A--G--GGATT--T-TAG-----G-GTTTA-ATACAGT-GT-----TGTAT--------T-----CT--GAATATATATTATGAGATCATAACCTGTAACAATACAGTACGATACATAATTAACAAGACATGAAAATAA-AATTAGGACAAAACATCAATCAATT-CACTCAGTATACAATCCAAACATTTCACAAAATACAAATACAGTT-CTT----G-ACTAGATAAATCAA--ATT-ACAAGTAAT---TTATTACCAGGCTGA-T-C-AGT-AAGTAGTGA--ACAA----AAA-----A--ATATG-A--TATGAGTAAA--TCT------------TCACAG--------ATTTTCTAAAGG-T-TGCTGTCGCT-TCGACTGGCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCAGGTGTTAGAAATTG-----TTAGTTTACCCATCAT------------------GTAACAAAATCAGTAAC--ATTACTCACTCATTCACTCAGTAACTTTGTGCAATACATACATG-----TATATA-T-ACA--GA-T-ACACTGACATCACAACACACAC-------AATTGAAACGGACTATAGATC---TAT-TTATACA--TGCCAGAGTAC----TTGTGACTAGGAGGCTTGCAACTATGAATTATAATAC-T--TAATG--TGGCC--AAAAGTAAGCCCTG
gi|4 : atataattgacattctgacacATATATGTGGCCGATGGTGGTTATATCAAG---AAC--TC-AGATCG-GT--G--AAGG--G--TTAAT-TTG-----G-GTTTA-ATGCAGT-TC-----T-TAT-A------CG----CT--G--TTTACACTA-AAGACAAAAACCTGCAACAACAC-GTACGGTACATAAATTACAAGACATGAAAACAACGATTACGACAAA-CTTCAAACAATTTTACGCGATACA-AATTCATACATAGCACATGATACAATTACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACTACGCTGA-T-TTAGT-AAGTAGCGA--A-AC----AAGACAATT--TTTTTTA--TATTAGAAAA--TCTGTG-A--A---GT---------------------TAAG-T-CCTTATCG-T-TCAACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTCTGGCGGGAATTGGAAATTG-----TTAATTTACCTACCAT------------------GC-----------TCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACATTGACATCACAAAACAAAC-------AACTGAAACGAATTATAGATC---TTT-TTAgtc
gi|5 : tgagaacaactataattaaaataaaagctattacgtacattcaagtttattattatatgtacgtgtttagccacaacttaaaagaaaaagctagtatgataaattaatacagACATATGTGGCAGATGGTGGTTATATCAAG---AAC--TA-AGACCG-TT--G--A--G--G--TT--T-TTTTTTTTG-GTTTA-ATGCAGTTGT-----TATAC-A------TGTACTCT--G--TTTACACTATAA-ACAAAAACCTGCAACGACACAGTACGATACATCAATTACAAGCAATGAAAACAACGATTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCACACATTTTACATAATACAAATACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACAAGGCTGA-TAT-AGT-AAGTAGCGA--A-AC----AA---------TTATTTA--TATTAGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTATATG-T-CCTTATCG-T-TCAATTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCTGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----CATACA-A-ACA--GA-T-GCACTGACATCGC--TACAAAC-------AATTGGAACGGACTATAGATG---TTT-TTACACA--CGCCAGAGTAC----TTGTGACCAGGAGGCTTGCAACTAAAATTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|6 : caTGGTCATCAAAGCAAT---AACAATA-AGATCG-GT--G--G--G--G--TT--T-TAG-----G-ATTTA-ATGCAGT-GT-----AGTAT--------T-----CTTAA--TATATATTATAAGACAAGAACCTGTAATGATACAGCACAATACGTAGTTTACAAGACATGAAAACAACAATTACGATAAAACATCAATCAA-TGCACATGATAC---------ACATTTCACACAATACAAATACTGTT-CTTTAGAA-AAT----ACATTAA--AGT-ACAAGTAAT---TCCTTACCAAGCTGA-T-C-AGC-AAGTAGTGAACA-AT----AA-----------AATGA--TATGAGCAAA--TCT-T----------TGC-AG--------ATTTTCTAAAGG-T-AACTGACGCT-TTAACTGTAAGAAGAAAG-GTGCCTAGATGGTTTGTTTGGCAGTAATTAGAAATGGTTAAATTAATTCACCCATCAT------------------ACAACAAAATCGCTCACTCATCACTCACTCATTTGCTCAATAACTTTGTGCAATACATACATGATACATGTATA-T-ACAATGA-T-ACACTAACTTCACCATGCAAAC------------AAACAGACTATAGATC---TAT-TTATATA--TGTCAGAGTAA----TTGTAACac
gi|7 : AGTACAAAAATAGTT-CTA----C-AGT-AA-GAA---A--AGTCACAAATAATAACTTCTTACCAGGCTGA-T-TTAGT-AAGTAGAGA--A-AC----AAGACA--T--TTTTTTA--CATTCGAAAA--TCTGTG-A--A---GTGA-AG--------ATTTTCTTCATG-TTCTTTATCA-T-TCAACTGTCAGAAAAAAA-GTGCCTAATTGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACCCCCTAACTCAATTACTTTGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAC-------AATTGAAACGGACTATAGACC---TTT-TTACACA--CACCAGAATAC----CTGTGACCAGGAGGCTCGCAACTAAAATTTAAAATA
gi|8 : tcacattctctcaattgctttcaagaaattcCTGA-T-TTAGT-AAGTAGCGA--A-AC----AAGA----CA-TTTTTTA--TATTAGAAAA--TCTGTG-G--A---GTGA-AG--------ATTTTCTATATGAT-CTTTATCG-T-TCAACTGTCAGAAGAAAAAGT---T-GATGGTGAGTT-GGCGGGAATCGGAAATTG-----TTAATTTACCCATCATGCAATATTAACCCCCTATGTAATAAAATCGCTTACTCATCACTCACTCATTCGATCAGTTACTTTGTGCAAAACATACGTG-----TATACA-A-TCA--GA-T-ACACTGACATCACATCACAAACAATTGAAAATTGAAACGGACTATAGATC---TTT-TTACACA--CGCCACAGTAC----TTGTGACCAACAGGATCGCAACTAAAATTTAAAATAC-C--TTATA--TGGCT--AAAAGCACGCTCTG
gi|9 : gtAAT-AA--AAT-GTATGAAAC---TCCTTAACAGGCTGAAT-C-GGTTAAATTATGA--A-AC----CA------------TTTAACTATCA--AAA--TC---G-A--A----T-A-AG--------ATTGTCT----G-T-CC--ATTG-T-ACGACTGTCTAAAGAAAA-ATGCCGAGATGATTAGTTTGGCTAGAATTAGAAATTG-----TTAATTCACTCACTAT------------------Ggtc
gi|9 : acagtttacTCACTCACTATGTTCATTACATACACG-----T-TACA-T-GCT--GAGT-ACACTAATATCACAATATAAAC-------AATTGAAAGAGACTATAAA-------A-TTAAAAG--TGTCAGAGTGC----AGGTATTGAGGAGGCACGCACTCAGAAA-TAAAATACACTGTAATGACTGG----AAAAGTAAACCttcattacatacacgttacatgctgagtacactaatatcacaatataaacaattgaaagagactataaaattaaaagtgtcagagtgcaggtattgaggaggcacgcactcagaaataaaatacactgtaatgactggaaaagtaaacctaggtcac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGCAAACAATGATAACAGCTTGTGGAATTATATAAATACTAGTATGTTATTGTGCGTGTATCTAGTAGGTTCGCAACTATAAATATAATACACAATGACTGAAAAATAAGACTTGG
Unaligned ( gi|23 ): AAGCCAAATGCCTACTTTACCATACTGGCAATAAATT
Alignments
lowQualScore : 22 11 11111 11111 55555555555555555555 1 1 11 111111 111 5555555555555555 1111111111111 1 111111111111111111
lowQualScore : 4 1 888 77 55 5 66 88888 66 33 66 5 1 22222 5 5 44444 1 33333333333333333333 1 0 0 0 2 1 0 1 3 2 1 1 2 1 1 2 1 2 33 111111 2 5 66 1 6 66 8 777 2 3 111 6 0 77 7777 2222222222222222 55 55 0 55 7777777777777 2 2 3 3 11 0 3 3 0 1 66666 0 999999999999999999 2 22 111 0 1 3 1 66666 666 33 2 2 8888888 555 2 2 0 33 5555 5 4 77777 77 33
lowQualScore : . . ... .. .. . .. ..... .. .. .. . . ..... . . ..... . .................... . . . . . . . . . . . . . . . . . . .. ...... . . .. . . .. . ... . . ... . . .. .... ................ .. .. . .. ............. . . . . .. . . . . . ..... . .................. . .. ... . . . . ..... ... .. . . ....... ... . . . .. .... . . ..... .. ..
lowQualScore : 5 0 888 66 22 0 99 55555 99 88 99 0 0 55555 0 7 33333 7 66666666666666666666 0 4 1 4 4 4 4 4 0 0 0 0 0 7 7 4 0 2 88 555555 0 0 44 9 9 11 9 888 6 6 888 7 1 99 7777 5555555555555555 00 00 1 00 4444444444444 3 3 6 6 99 9 6 1 2 5 77777 9 777777777777777777 2 11 888 4 0 7 9 22222 444 77 7 7 7777777 000 0 9 5 99 3333 5 5 88888 99 99
consensus : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAA--AC----AAG-ACA---TTN-----TTTA--T--ATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
Reference ( family-2193 ) : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TNG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAA--AC----AAG-A-----TTN-----TTTA--T--ATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|1 : GTGACCGATAATCGTCAGAGCAAT---AACAATA-TGATTG-GT--G--A--GTGG--TT--T-CAG-----GGTTTA-ATGCAGT-GT-----TGTAT-------T-----CTCAG--TATATATTATAAGACAAGAACTTGAAATGATACAGTATAAAACATAAATTACAAAACATGAAAACAACGATTACGACAAAACATCAATCAATT-CACGCAAAATGCAATTCACACGTTTCACAAATTACAAATATAGTT-CCT----A-G-C-GA-GA-TAAATTAATTGCAAGTAGT---TTCCTGCCAGGCTAA-T-C-AGC-AAGTAGTGAA---C----AAT-A-------A-----ATTA--T--AATAAAAAACATATGTTAATCTGCGC-AGATTTTCTAAAGG-T-TGCTGTTGCT-TTGGCTGTCAGAATAAAA-GTACCTAGATGGTTACATTGGCGGAAATAAGAAATAGATAA-----TTTACACATCAT------------------GCAACAAATTTGCTCACTCAACACTCACTCATTCGCTCAATAACGTCGTGCAATACATATATG-----TATTTA-T-ACC--GA-T-ACACTTACATCACAACACAAAC-------AATTGAAACCGATTATAGATA---TAT-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAAGCTCGCAACTATAAATTAAGATAC-C--CAATG--TGGCC--AAAAGTAGGCCCTG
gi|10 : atttttttatgtattttagtctcatccacacatgtacgagtataatgaacgggtacatataacgGC-AAGTAGTGAA--AC----ACG-ACATT-TTG-----TTTA--T--ATTAGAAGT--TCTGTGAA---GTGA-AGATTTTCTATATG-T-TTTTATCG-T-TCAACTGTCAGAAGAAAA-GT-----GAT--TT-GTTTGGCGGGAATTGGAAATTGTTAA-----TT-----------------------------------------TCACTGATCACTCACTCATTCGCTCAATTACTTCGTGCAAG-CATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAACAAAAAC-------AATACAAACGGACCATAAATC---TTTGTTACACA--TGCCAGAGTAT----TTGTGACCAGGAGGCTCGCAACTAAAGTTTAAAATAC-T--TAATG--TGGCA--AAAAGCAAGCCCTGg
gi|11 : ttCCAGACTGA-T-C-AGT-AAGTAGC-AA--ACGATGAAGTA-----GTAAAAAATTGA--TGCATTAGTAAA--TCT----A---CTCA--TATTTTCTACACG-C-TGCCGTCG-CATTGACTGGCAAAAGAAAA-GTGCCTAGATGGTTAG--TG--------TAGA--------------------CATCAT------------------GCAACAACGTCG---AC--------CACCCATTCGCTCAATAACTT--------ACATTCATG-----TATATATATACG--AA-T-ACACTGACATCACAACACAAAC-------AATTGAAACAGACTATAGATT---TAT-TTATACA--TGCCAG-GTACTTAATTGTGAGCAGGGGGCTCGCAACTATAAATAATACTAC-C--CAATG--TGGCC--AAAAGTAAGCCgtcac
gi|12 : ATACACGTGATCTATGGTCGTTGGAGTAATTTAAAC------GATCGTGT--G--A--G--GGATT--T-TAG-----GGTTTATATGCAGT-GTCTCCATGTATAGTATAAT-----CA--A--TATACAAAACAAGACAAGAACCTGTTACGATGCAGTACAATACATAATTTACAAAATATGAAAACAACGATTACGACAAAACATCAATCAA-TTCACGCAATATACATGTCATTCATTTCACACAATGCAAATACTGTTCCTT----ACAAG-GT-CAATTAA--AAT-ACAAGTTAT---------CCCGGCTGA-T-C-AGC-AAATAGTGAA--
gi|13 : ACTGTCAGAAGAGAT-GTGTCGATATTGTCAGTCTGGCTCGAATTAAAAAGTGTTAG-----CTCACACATCAT------------------GCAATATAATcta
gi|13 : caaaagattatgacatcaagcatatcTTAGCTCA--CACATCATGCAATATA---AT------TATAT-----TG--GG-T-ACACTAACATCACAACACAAAC-------AATTGAAACAGAATGTAAAGT---TAT-TTATGCA--TGCCAGAATGC----GTGTGACCAGGAGGCTTGCATATATAAA-TACCATAT-A--CAATGACTAG----AAAAGTAAGCtatattgggtacactaacatcacaacacaaacaattgaaacagaatgtaaagttatttatgcatgccagaatgcgtgtgaccaggaggcttgcatatataaataccatatacaatgactagaaaagtaagcattggtcac
gi|14 : caaaagattatgacatcaagcatatcactgtcagaagagatgtgtcgatattgtcagtctggctcgaattaaaaagtgGACTGTCAGAAGAAAA-GTGTCAGGATGTTTACTTTGGCGGGAATTAGAAATTGTTTA-----TTCACTCATCAT------------------GTAACAA-----------CATCACTCA-------AC-CAATAAATACGCGCATTACATACCT------T-TACA-T-ACA--GA-TTATGCTAACACCATAACACAAAC-------AATTGAAATAGACTA---------TTC-CCATATG--TATCAGAGTGC----TTGCAATCACGAGGCTCGCAACTGCAA--TAAA--------TAATG--C--CCGGAAAAGCAAGTCTTGAattggtcac
gi|15 : ATGGTTAGTTTG-------TTGGGAATTGTTAA-----TTTATCCATCAT------------------GCAATAAAACATCTCATTTATCATTCACTCATTCGCTCAGTTATTTAGTGCAATACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAATACAAGC-------ATTTGAAACGGACTATAAATCTTTTTT-TTATATAATTGCCAGAGTAC----TTGTGAC---------------------TTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGtca
gi|16 : ACATG-----CACACA-A-TGA--G--T-GAGCAAATAGCACAACATAAAC-------AATTGAAACTGACTATAAAgt
gi|17 : cagtgtgaatatcaagataaacgagctgtgatgttttctttggtagacatttgagctaatcaaataatcattaatccgtaccatcaaatataccacgaATATAAGTTGCCGATGGTCGTCAGATTAAT---GAC--TACAGATCG-GT--GATA--G--G---T--T-TAG-----AGTTTA-ATGCAGatta
gi|19 : attttaatatgaatttgtatacacaaatagctacaggcctatgaatactgAGAAAGTTAGTTTGGCATAAGTTTGAGACTATTAA-----TTCACCTATCAT---------------------------TTGCTCATTCGCCA---ACACA------CAATAACTGCATATTATACATACA-G------ATACA-
gi|2 : aTCA-ATCAAG---AAC--TA-AGATCG-GTTAG--G--G--G--TT--TATCG-----GGTTTA-ATGCAGT-AT-----TATATG------------CT--G--TTTCCACTATA-GACAAAA----------------------ACAT----TACAAGACATGAAAACAACGGTTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCATACATTTCACATAATACAAATACGGTT--TT----A-AAT-GA-GA-TAAA--AAT-ACAAATAAA---TGCTTACCAGTCTGA-T-T-AATTAAGAAGCCAA--AC----AAG-ACAA--TTT-----CTTA--T--ATAAGAAGA--TCTGTGA---------AGATTTTCTATTTG-T-CCTCATCA-T-TCAACTATCAGAAGAAAA-GTACCTAGTTGGTTAGTTTGGCGGGAATTGAAAATTGTTAA-----TTTACCCGTCAA------------------GCAATAAAATTGCTCACTCATCACTCACTCATTCGCTCAATTAATT-GTACAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAA-------CACTGAAACGGACTCTAGATC---TTT-TTACTCC--TGCCAGAGTGA----TTGTAACCAGGAGGCTAGCAACT--AATTTCAAATAC-C--CAATG--TGGCC--AAAAGCAAGCCCTG
gi|20 : gtgtgtgtgtgcatgctggcgtgtttagtatgtgagtttgtaaatgtgaacctctcacatgttataatgaatttgtatata--TACCAGAATAC----GTGTGATCAAGAGGCTCGCAACTATAAATTATGATAC-C---AATA--TATTC--AAAAGTAAGCCCTGgtc
gi|21 : CAGAGTGC----ATGTGACCAGAAGGCTCGCAACTA-AATTT-AAAT---------TG--TGGCC--AAAAGCAAGCCCTGgtca
gi|22 : TGC----TTGTAGCCAGGAGGCTCGCAACTATAAATTATAATAC-A--CAGTG--TGACC--GAAAGTAATCCCTGgtca
gi|3 : ATATATGTGACCGATGGTCATCAGAGCAAT---AACAATA-CGATCG-GT--G--A--G--GGATT--T-TAG-----GGTTTA-ATACAGT-GT-----TGTAT-------T-----CT--GAATATATATTATGAGATCATAACCTGTAACAATACAGTACGATACATAATTAACAAGACATGAAAATAA-AATTAGGACAAAACATCAATCAATT-CACTCAGTATACAATCCAAACATTTCACAAAATACAAATACAGTT-CTT----G-ACTAGATAAATCAA--ATT-ACAAGTAAT---TTATTACCAGGCTGA-T-C-AGT-AAGTAGTGAAC-AA----AAA-A-----ATA-----TG-A--T--ATGAGTAAA--TCT---------TCACAGATTTTCTAAAGG-T-TGCTGTCGCT-TCGACTGGCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCAGGTGTTAGAAATTGTTAG-----TTTACCCATCAT------------------GTAACAAAATCAGTAAC--ATTACTCACTCATTCACTCAGTAACTTTGTGCAATACATACATG-----TATATA-T-ACA--GA-T-ACACTGACATCACAACACACAC-------AATTGAAACGGACTATAGATC---TAT-TTATACA--TGCCAGAGTAC----TTGTGACTAGGAGGCTTGCAACTATGAATTATAATAC-T--TAATG--TGGCC--AAAAGTAAGCCCTG
gi|4 : atataattgacattctgacacATATATGTGGCCGATGGTGGTTATATCAAG---AAC--TC-AGATCG-GT--G--AAGG--G--TTAAT-TTG-----GGTTTA-ATGCAGT-TC-----T-TATA------CG----CT--G--TTTACACTA-AAGACAAAAACCTGCAACAACAC-GTACGGTACATAAATTACAAGACATGAAAACAACGATTACGACAAA-CTTCAAACAATTTTACGCGATACA-AATTCATACATAGCACATGATACAATTACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACTACGCTGA-T-TTAGT-AAGTAGCGAA--AC----AAG-ACAATTTTT-----TTTA--T--ATTAGAAAA--TCTGTGAA---GT-------------TAAG-T-CCTTATCG-T-TCAACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTCTGGCGGGAATTGGAAATTGTTAA-----TTTACCTACCAT------------------GC-----------TCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACATTGACATCACAAAACAAAC-------AACTGAAACGAATTATAGATC---TTT-TTAgtc
gi|5 : tgagaacaactataattaaaataaaagctattacgtacattcaagtttattattatatgtacgtgtttagccacaacttaaaagaaaaagctagtatgataaattaatacagACATATGTGGCAGATGGTGGTTATATCAAG---AAC--TA-AGACCG-TT--G--A--G--G--TT--T-TTTTTTTTGGTTTA-ATGCAGTTGT-----TATACA------TGTACTCT--G--TTTACACTATAA-ACAAAAACCTGCAACGACACAGTACGATACATCAATTACAAGCAATGAAAACAACGATTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCACACATTTTACATAATACAAATACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACAAGGCTGA-TAT-AGT-AAGTAGCGAA--AC----AA--------TTA-----TTTA--T--ATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTATATG-T-CCTTATCG-T-TCAATTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCTGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----CATACA-A-ACA--GA-T-GCACTGACATCGC--TACAAAC-------AATTGGAACGGACTATAGATG---TTT-TTACACA--CGCCAGAGTAC----TTGTGACCAGGAGGCTTGCAACTAAAATTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|6 : caTGGTCATCAAAGCAAT---AACAATA-AGATCG-GT--G--G--G--G--TT--T-TAG-----GATTTA-ATGCAGT-GT-----AGTAT-------T-----CTTAA--TATATATTATAAGACAAGAACCTGTAATGATACAGCACAATACGTAGTTTACAAGACATGAAAACAACAATTACGATAAAACATCAATCAATG-CACATGATACACA---------TTTCACACAATACAAATACTGTT-CTTTAGAA-AAT-AC---ATTAA--AGT-ACAAGTAAT---TCCTTACCAAGCTGA-T-C-AGC-AAGTAGTGAACAAT----AAA-A-----TG---------A--T--ATGAGCAAA--TCT-T-------TGC-AGATTTTCTAAAGG-T-AACTGACGCT-TTAACTGTAAGAAGAAAG-GTGCCTAGATGGTTTGTTTGGCAGTAATTAGAAATGGTTAAATTAATTCACCCATCAT------------------ACAACAAAATCGCTCACTCATCACTCACTCATTTGCTCAATAACTTTGTGCAATACATACATGATACATGTATA-T-ACAATGA-T-ACACTAACTTCACCATGCAAAC------------AAACAGACTATAGATC---TAT-TTATATA--TGTCAGAGTAA----TTGTAACac
gi|7 : AGTACAAAAATAGTT-CTA----C-AGT-AA-GAA---A--AGTCACAAATAATAACTTCTTACCAGGCTGA-T-TTAGT-AAGTAGAGAA--AC----AAG-ACAT--TTT-----TTTA--C--ATTCGAAAA--TCTGTGAA---GTGA-AGATTTTCTTCATG-TTCTTTATCA-T-TCAACTGTCAGAAAAAAA-GTGCCTAATTGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACCCCCTAACTCAATTACTTTGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAC-------AATTGAAACGGACTATAGACC---TTT-TTACACA--CACCAGAATAC----CTGTGACCAGGAGGCTCGCAACTAAAATTTAAAATA
gi|8 : tcacattctctcaattgctttcaagaaattcCTGA-T-TTAGT-AAGTAGCGAA--AC----AAG-ACA---TTT-----TTTA--T--ATTAGAAAA--TCTGTGGA---GTGA-AGATTTTCTATATGAT-CTTTATCG-T-TCAACTGTCAGAAGAAAAAGT---T-GATGGTGAGTT-GGCGGGAATCGGAAATTGTTAA-----TTTACCCATCATGCAATATTAACCCCCTATGTAATAAAATCGCTTACTCATCACTCACTCATTCGATCAGTTACTTTGTGCAAAACATACGTG-----TATACA-A-TCA--GA-T-ACACTGACATCACATCACAAACAATTGAAAATTGAAACGGACTATAGATC---TTT-TTACACA--CGCCACAGTAC----TTGTGACCAACAGGATCGCAACTAAAATTTAAAATAC-C--TTATA--TGGCT--AAAAGCACGCTCTG
gi|9 : gtAAT-AA--AAT-GTATGAAAC---TCCTTAACAGGCTGAAT-C-GGTTAAATTATGAA--AC----CA----------------TTTAACT--ATCA--AAA--TC---GAA----T-A-AGATTGTCT----G-T-CC--ATTG-T-ACGACTGTCTAAAGAAAA-ATGCCGAGATGATTAGTTTGGCTAGAATTAGAAATTGTTAA-----TTCACTCACTAT------------------Ggtc
gi|9 : acagtttacTCACTCACTATGTTCATTACATACACG-----T-TACA-T-GCT--GAGT-ACACTAATATCACAATATAAAC-------AATTGAAAGAGACTATAAA-------A-TTAAAAG--TGTCAGAGTGC----AGGTATTGAGGAGGCACGCACTCAGAAA-TAAAATACACTGTAATGACTGG----AAAAGTAAACCttcattacatacacgttacatgctgagtacactaatatcacaatataaacaattgaaagagactataaaattaaaagtgtcagagtgcaggtattgaggaggcacgcactcagaaataaaatacactgtaatgactggaaaagtaaacctaggtcac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGCAAACAATGATAACAGCTTGTGGAATTATATAAATACTAGTATGTTATTGTGCGTGTATCTAGTAGGTTCGCAACTATAAATATAATACACAATGACTGAAAAATAAGACTTGG
Unaligned ( gi|23 ): AAGCCAAATGCCTACTTTACCATACTGGCAATAAATT
Alignments
lowQualScore : 22 11 11111 11111 55555555555555555555 1 11 111111 111 11111111111 111 2222222 1111111111111 1 111111111111111111
lowQualScore : 4 1 888 77 55 5 66 88888 66 33 66 5 0 22222 5 5 44444 1 33333333333333333333 1 0 0 0 2 1 0 1 3 2 1 1 5 8 55 2 1 2 33 111111 2 5555 1 6 66 8 777 2 3 111 6 0 77777777777 4 1 000 4444444 55 0 55 7777777777777 2 2 3 3 11 0 3 3 1 66666 999999999999999999 2 22 111 0 1 3 1 66666 666 33 2 2 8888888 555 2 2 0 33 5555 5 4 77777 77 33
lowQualScore : . . ... .. .. . .. ..... .. .. .. . . ..... . . ..... . .................... . . . . . . . . . . . . . . .. . . . .. ...... . .... . . .. . ... . . ... . . ........... . . ... ....... .. . .. ............. . . . . .. . . . . ..... .................. . .. ... . . . . ..... ... .. . . ....... ... . . . .. .... . . ..... .. ..
lowQualScore : 5 0 888 66 22 0 99 55555 99 88 99 0 5 55555 0 7 33333 7 66666666666666666666 0 4 1 4 4 4 4 4 0 0 0 0 0 4 44 4 0 2 88 555555 0 5555 9 9 11 9 888 6 6 888 7 1 33333333333 3 4 000 3333333 00 1 00 4444444444444 3 3 6 6 99 9 6 1 5 77777 777777777777777777 2 11 888 4 0 7 9 22222 444 77 7 7 7777777 000 0 9 5 99 3333 5 5 88888 99 99
consensus : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAAAC-----------AAGACA---TTNT--TT-A--TATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
Reference ( family-2193 ) : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAAAC-----------AAGACA---TTNT--TT-A--TATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|1 : GTGACCGATAATCGTCAGAGCAAT---AACAATA-TGATTG-GT--G--A--GTGG--TT--T-CAG-----GGTTTA-ATGCAGT-GT-----TGTAT-------T-----CTCAG--TATATATTATAAGACAAGAACTTGAAATGATACAGTATAAAACATAAATTACAAAACATGAAAACAACGATTACGACAAAACATCAATCAATT-CACGCAAAATGCAATTCACACGTTTCACAAATTACAAATATAGTT-CCT----A-G-C-GA-GA-TAAATTAATTGCAAGTAGT---TTCCTGCCAGGCTAA-T-C-AGC-AAGTAGTGAA-C-----------AATAAA---TT-------A--TAATAAAAAACATATGTTAATCTGCGC-AGATTTTCTAAAGG-T-TGCTGTTGCT-TTGGCTGTCAGAATAAAA-GTACCTAGATGGTTACATTGGCGGAAATAAGAAATAG-----ATAATTTACACATCAT------------------GCAACAAATTTGCTCACTCAACACTCACTCATTCGCTCAATAACGTCGTGCAATACATATATG-----TATTTA-T-ACC--GA-T-ACACTTACATCACAACACAAAC-------AATTGAAACCGATTATAGATA---TAT-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAAGCTCGCAACTATAAATTAAGATAC-C--CAATG--TGGCC--AAAAGTAGGCCCTG
gi|10 : atttttttatgtattttagtctcatccacacatgtacgagtataatgaacgggtacatataacgGC-AAGTAGTGAAAC-----------ACGACA---TTTTGTTT-A--TATTAGAAGT--TCTGTGAA---GTGA-AGATTTTCTATATG-T-TTTTATCG-T-TCAACTGTCAGAAGAAAA-GTG-----AT--TT-GTTTGGCGGGAATTGGAAATTG-----TTAATTT-----------------------------------------CACTGATCACTCACTCATTCGCTCAATTACTTCGTGCAAG-CATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAACAAAAAC-------AATACAAACGGACCATAAATC---TTTGTTACACA--TGCCAGAGTAT----TTGTGACCAGGAGGCTCGCAACTAAAGTTTAAAATAC-T--TAATG--TGGCA--AAAAGCAAGCCCTGg
gi|11 : ttCCAGACTGA-T-C-AGT-AAGTAGC-AAACGATGAAGTAGTAAAAAA---TTGA--T--G--CATTAGTAAA--TCT----A---CTCA--TATTTTCTACACG-C-TGCCGTCG-CATTGACTGGCAAAAGAAAA-GTGCCTAGATGGTTAG--TG--------TAGA--------------------CATCAT------------------GCAACAACGTCG---AC--------CACCCATTCGCTCAATAACTT--------ACATTCATG-----TATATATATACG--AA-T-ACACTGACATCACAACACAAAC-------AATTGAAACAGACTATAGATT---TAT-TTATACA--TGCCAG-GTACTTAATTGTGAGCAGGGGGCTCGCAACTATAAATAATACTAC-C--CAATG--TGGCC--AAAAGTAAGCCgtcac
gi|12 : ATACACGTGATCTATGGTCGTTGGAGTAATTTAAAC------GATCGTGT--G--A--G--GGATT--T-TAG-----GGTTTATATGCAGT-GTCTCCATGTATAGTATAAT-----CA--A--TATACAAAACAAGACAAGAACCTGTTACGATGCAGTACAATACATAATTTACAAAATATGAAAACAACGATTACGACAAAACATCAATCAA-TTCACGCAATATACATGTCATTCATTTCACACAATGCAAATACTGTTCCTT----ACAAG-GT-CAATTAA--AAT-ACAAGTTAT---------CCCGGCTGA-T-C-AGC-AAATAGTGAA
gi|13 : ACTGTCAGAAGAGAT-GTGTCGATATTGTCAGTCTGGCTCGAATTAAAAAGTG-----TTAGCTCACACATCAT------------------GCAATATAATcta
gi|13 : caaaagattatgacatcaagcatatcTTAGCTCA--CACATCATGCAATATA---AT------TATAT-----TG--GG-T-ACACTAACATCACAACACAAAC-------AATTGAAACAGAATGTAAAGT---TAT-TTATGCA--TGCCAGAATGC----GTGTGACCAGGAGGCTTGCATATATAAA-TACCATAT-A--CAATGACTAG----AAAAGTAAGCtatattgggtacactaacatcacaacacaaacaattgaaacagaatgtaaagttatttatgcatgccagaatgcgtgtgaccaggaggcttgcatatataaataccatatacaatgactagaaaagtaagcattggtcac
gi|14 : caaaagattatgacatcaagcatatcactgtcagaagagatgtgtcgatattgtcagtctggctcgaattaaaaagtgGACTGTCAGAAGAAAA-GTGTCAGGATGTTTACTTTGGCGGGAATTAGAAATTG-----TTTATTCACTCATCAT------------------GTAACAA-----------CATCACTCA-------AC-CAATAAATACGCGCATTACATACCT------T-TACA-T-ACA--GA-TTATGCTAACACCATAACACAAAC-------AATTGAAATAGACTA---------TTC-CCATATG--TATCAGAGTGC----TTGCAATCACGAGGCTCGCAACTGCAA--TAAA--------TAATG--C--CCGGAAAAGCAAGTCTTGAattggtcac
gi|15 : ATGGTTAGTTTG-------TTGGGAATTG-----TTAATTTATCCATCAT------------------GCAATAAAACATCTCATTTATCATTCACTCATTCGCTCAGTTATTTAGTGCAATACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAATACAAGC-------ATTTGAAACGGACTATAAATCTTTTTT-TTATATAATTGCCAGAGTAC----TTGTGAC---------------------TTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGtca
gi|16 : ACATG-----CACACA-A-TGA--G--T-GAGCAAATAGCACAACATAAAC-------AATTGAAACTGACTATAAAgt
gi|17 : cagtgtgaatatcaagataaacgagctgtgatgttttctttggtagacatttgagctaatcaaataatcattaatccgtaccatcaaatataccacgaATATAAGTTGCCGATGGTCGTCAGATTAAT---GAC--TACAGATCG-GT--GATA--G--G---T--T-TAG-----AGTTTA-ATGCAGatta
gi|19 : attttaatatgaatttgtatacacaaatagctacaggcctatgaatactgAGAAAGTTAGTTTGGCATAAGTTTGAGACTA-----TTAATTCACCTATCAT---------------------------TTGCTCATTCGCCA---ACACA------CAATAACTGCATATTATACATACA-G------ATACA-
gi|2 : aTCA-ATCAAG---AAC--TA-AGATCG-GTTAG--G--G--G--TT--TATCG-----GGTTTA-ATGCAGT-AT-----TATATG------------CT--G--TTTCCACTATA-GACAAAA----------------------ACAT----TACAAGACATGAAAACAACGGTTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCATACATTTCACATAATACAAATACGGTT--TT----A-AAT-GA-GA-TAAA--AAT-ACAAATAAA---TGCTTACCAGTCTGA-T-T-AATTAAGAAGCCAAAC-----------AAGACAA--TTTC--TT-A--TATAAGAAGA--TCTGTGA---------AGATTTTCTATTTG-T-CCTCATCA-T-TCAACTATCAGAAGAAAA-GTACCTAGTTGGTTAGTTTGGCGGGAATTGAAAATTG-----TTAATTTACCCGTCAA------------------GCAATAAAATTGCTCACTCATCACTCACTCATTCGCTCAATTAATT-GTACAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAA-------CACTGAAACGGACTCTAGATC---TTT-TTACTCC--TGCCAGAGTGA----TTGTAACCAGGAGGCTAGCAACT--AATTTCAAATAC-C--CAATG--TGGCC--AAAAGCAAGCCCTG
gi|20 : gtgtgtgtgtgcatgctggcgtgtttagtatgtgagtttgtaaatgtgaacctctcacatgttataatgaatttgtatata--TACCAGAATAC----GTGTGATCAAGAGGCTCGCAACTATAAATTATGATAC-C---AATA--TATTC--AAAAGTAAGCCCTGgtc
gi|21 : CAGAGTGC----ATGTGACCAGAAGGCTCGCAACTA-AATTT-AAAT---------TG--TGGCC--AAAAGCAAGCCCTGgtca
gi|22 : TGC----TTGTAGCCAGGAGGCTCGCAACTATAAATTATAATAC-A--CAGTG--TGACC--GAAAGTAATCCCTGgtca
gi|3 : ATATATGTGACCGATGGTCATCAGAGCAAT---AACAATA-CGATCG-GT--G--A--G--GGATT--T-TAG-----GGTTTA-ATACAGT-GT-----TGTAT-------T-----CT--GAATATATATTATGAGATCATAACCTGTAACAATACAGTACGATACATAATTAACAAGACATGAAAATAA-AATTAGGACAAAACATCAATCAATT-CACTCAGTATACAATCCAAACATTTCACAAAATACAAATACAGTT-CTT----G-ACTAGATAAATCAA--ATT-ACAAGTAAT---TTATTACCAGGCTGA-T-C-AGT-AAGTAGTGAA-C-----------AAAAAA---ATAT--G--A--TATGAGTAAA--TCT---------TCACAGATTTTCTAAAGG-T-TGCTGTCGCT-TCGACTGGCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCAGGTGTTAGAAATTG-----TTAGTTTACCCATCAT------------------GTAACAAAATCAGTAAC--ATTACTCACTCATTCACTCAGTAACTTTGTGCAATACATACATG-----TATATA-T-ACA--GA-T-ACACTGACATCACAACACACAC-------AATTGAAACGGACTATAGATC---TAT-TTATACA--TGCCAGAGTAC----TTGTGACTAGGAGGCTTGCAACTATGAATTATAATAC-T--TAATG--TGGCC--AAAAGTAAGCCCTG
gi|4 : atataattgacattctgacacATATATGTGGCCGATGGTGGTTATATCAAG---AAC--TC-AGATCG-GT--G--AAGG--G--TTAAT-TTG-----GGTTTA-ATGCAGT-TC-----T-TATA------CG----CT--G--TTTACACTA-AAGACAAAAACCTGCAACAACAC-GTACGGTACATAAATTACAAGACATGAAAACAACGATTACGACAAA-CTTCAAACAATTTTACGCGATACA-AATTCATACATAGCACATGATACAATTACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACTACGCTGA-T-TTAGT-AAGTAGCGAAAC-----------AAGACAATTTTTT--TT-A--TATTAGAAAA--TCTGTGAA---GT-------------TAAG-T-CCTTATCG-T-TCAACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTCTGGCGGGAATTGGAAATTG-----TTAATTTACCTACCAT------------------GC-----------TCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACATTGACATCACAAAACAAAC-------AACTGAAACGAATTATAGATC---TTT-TTAgtc
gi|5 : tgagaacaactataattaaaataaaagctattacgtacattcaagtttattattatatgtacgtgtttagccacaacttaaaagaaaaagctagtatgataaattaatacagACATATGTGGCAGATGGTGGTTATATCAAG---AAC--TA-AGACCG-TT--G--A--G--G--TT--T-TTTTTTTTGGTTTA-ATGCAGTTGT-----TATACA------TGTACTCT--G--TTTACACTATAA-ACAAAAACCTGCAACGACACAGTACGATACATCAATTACAAGCAATGAAAACAACGATTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCACACATTTTACATAATACAAATACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACAAGGCTGA-TAT-AGT-AAGTAGCGAAAC-----------AA-------TTAT--TT-A--TATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTATATG-T-CCTTATCG-T-TCAATTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCTGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----CATACA-A-ACA--GA-T-GCACTGACATCGC--TACAAAC-------AATTGGAACGGACTATAGATG---TTT-TTACACA--CGCCAGAGTAC----TTGTGACCAGGAGGCTTGCAACTAAAATTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|6 : caTGGTCATCAAAGCAAT---AACAATA-AGATCG-GT--G--G--G--G--TT--T-TAG-----GATTTA-ATGCAGT-GT-----AGTAT-------T-----CTTAA--TATATATTATAAGACAAGAACCTGTAATGATACAGCACAATACGTAGTTTACAAGACATGAAAACAACAATTACGATAAAACATCAATCAA-TGCACATGATAC---------ACATTTCACACAATACAAATACTGTT-CTTTAGAA-AAT----ACATTAA--AGT-ACAAGTAAT---TCCTTACCAAGCTGA-T-C-AGC-AAGTAGTG-AAC-----------AATAAA---ATG------A--TATGAGCAAA--TCT-T-------TGC-AGATTTTCTAAAGG-T-AACTGACGCT-TTAACTGTAAGAAGAAAG-GTGCCTAGATGGTTTGTTTGGCAGTAATTAGAAATGGTTAAATTAATTCACCCATCAT------------------ACAACAAAATCGCTCACTCATCACTCACTCATTTGCTCAATAACTTTGTGCAATACATACATGATACATGTATA-T-ACAATGA-T-ACACTAACTTCACCATGCAAAC------------AAACAGACTATAGATC---TAT-TTATATA--TGTCAGAGTAA----TTGTAACac
gi|7 : AGTACAAAAATAGTT-CTA----C-AGT-AA-GAA---A--AGTCACAAATAATAACTTCTTACCAGGCTGA-T-TTAGT-AAGTAGAGAAAC-----------AAGACA---TTTT--TTTA--CATTCGAAAA--TCTGTGAA---GTGA-AGATTTTCTTCATG-TTCTTTATCA-T-TCAACTGTCAGAAAAAAA-GTGCCTAATTGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACCCCCTAACTCAATTACTTTGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAC-------AATTGAAACGGACTATAGACC---TTT-TTACACA--CACCAGAATAC----CTGTGACCAGGAGGCTCGCAACTAAAATTTAAAATA
gi|8 : tcacattctctcaattgctttcaagaaattcCTGA-T-TTAGT-AAGTAGCGAAAC-----------AAGACA---TTTT--TT-A--TATTAGAAAA--TCTGTGGA---GTGA-AGATTTTCTATATGAT-CTTTATCG-T-TCAACTGTCAGAAGAAAAAGT---T-GATGGTGAGTT-GGCGGGAATCGGAAATTG-----TTAATTTACCCATCATGCAATATTAACCCCCTATGTAATAAAATCGCTTACTCATCACTCACTCATTCGATCAGTTACTTTGTGCAAAACATACGTG-----TATACA-A-TCA--GA-T-ACACTGACATCACATCACAAACAATTGAAAATTGAAACGGACTATAGATC---TTT-TTACACA--CGCCACAGTAC----TTGTGACCAACAGGATCGCAACTAAAATTTAAAATAC-C--TTATA--TGGCT--AAAAGCACGCTCTG
gi|9 : gtAAT-AA--AAT-GTATGAAAC---TCCTTAACAGGCTGAAT-C-GGTTAAATTATGAAAC---------------CA---TT-----T-AACTATCA--AAA--TC---GAA----T-A-AGATTGTCT----G-T-CC--ATTG-T-ACGACTGTCTAAAGAAAA-ATGCCGAGATGATTAGTTTGGCTAGAATTAGAAATTG-----TTAATTCACTCACTAT------------------Ggtc
gi|9 : acagtttacTCACTCACTATGTTCATTACATACACG-----T-TACA-T-GCT--GAGT-ACACTAATATCACAATATAAAC-------AATTGAAAGAGACTATAAA-------A-TTAAAAG--TGTCAGAGTGC----AGGTATTGAGGAGGCACGCACTCAGAAA-TAAAATACACTGTAATGACTGG----AAAAGTAAACCttcattacatacacgttacatgctgagtacactaatatcacaatataaacaattgaaagagactataaaattaaaagtgtcagagtgcaggtattgaggaggcacgcactcagaaataaaatacactgtaatgactggaaaagtaaacctaggtcac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGCAAACAATGATAACAGCTTGTGGAATTATATAAATACTAGTATGTTATTGTGCGTGTATCTAGTAGGTTCGCAACTATAAATATAATACACAATGACTGAAAAATAAGACTTGG
Unaligned ( gi|23 ): AAGCCAAATGCCTACTTTACCATACTGGCAATAAATT
Alignments
lowQualScore : 22 11 11111 11111 55555555555555555555 1 11 111111 111 11111111111 111 2222222 1111111111111 1 111111111111111111
lowQualScore : 4 1 888 77 55 5 66 88888 66 33 66 5 0 22222 5 5 44444 1 33333333333333333333 1 0 0 0 2 1 0 1 3 2 1 1 5 8 55 2 1 2 33 111111 2 5555 1 6 66 8 777 2 3 111 6 0 77777777777 4 1 000 4444444 55 0 55 7777777777777 2 2 3 3 11 0 3 3 1 66666 999999999999999999 2 22 111 0 1 3 1 66666 666 33 2 2 8888888 555 2 2 0 33 5555 5 4 77777 77 33
lowQualScore : . . ... .. .. . .. ..... .. .. .. . . ..... . . ..... . .................... . . . . . . . . . . . . . . .. . . . .. ...... . .... . . .. . ... . . ... . . ........... . . ... ....... .. . .. ............. . . . . .. . . . . ..... .................. . .. ... . . . . ..... ... .. . . ....... ... . . . .. .... . . ..... .. ..
lowQualScore : 5 0 888 66 22 0 99 55555 99 88 99 0 5 55555 0 7 33333 7 66666666666666666666 0 4 1 4 4 4 4 4 0 0 0 0 0 4 44 4 0 2 88 555555 0 5555 9 9 11 9 888 6 6 888 7 1 33333333333 3 4 000 3333333 00 1 00 4444444444444 3 3 6 6 99 9 6 1 5 77777 777777777777777777 2 11 888 4 0 7 9 22222 444 77 7 7 7777777 000 0 9 5 99 3333 5 5 88888 99 99
consensus : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAAAC-----------AAGACA---TTNT--TT-A--TATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
Reference ( family-2193 ) : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAAAC-----------AAGACA---TTNT--TT-A--TATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|1 : GTGACCGATAATCGTCAGAGCAAT---AACAATA-TGATTG-GT--G--A--GTGG--TT--T-CAG-----GGTTTA-ATGCAGT-GT-----TGTAT-------T-----CTCAG--TATATATTATAAGACAAGAACTTGAAATGATACAGTATAAAACATAAATTACAAAACATGAAAACAACGATTACGACAAAACATCAATCAATT-CACGCAAAATGCAATTCACACGTTTCACAAATTACAAATATAGTT-CCT----A-G-C-GA-GA-TAAATTAATTGCAAGTAGT---TTCCTGCCAGGCTAA-T-C-AGC-AAGTAGTGAA-C-----------AATAAA---TT-------A--TAATAAAAAACATATGTTAATCTGCGC-AGATTTTCTAAAGG-T-TGCTGTTGCT-TTGGCTGTCAGAATAAAA-GTACCTAGATGGTTACATTGGCGGAAATAAGAAATAG-----ATAATTTACACATCAT------------------GCAACAAATTTGCTCACTCAACACTCACTCATTCGCTCAATAACGTCGTGCAATACATATATG-----TATTTA-T-ACC--GA-T-ACACTTACATCACAACACAAAC-------AATTGAAACCGATTATAGATA---TAT-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAAGCTCGCAACTATAAATTAAGATAC-C--CAATG--TGGCC--AAAAGTAGGCCCTG
gi|10 : atttttttatgtattttagtctcatccacacatgtacgagtataatgaacgggtacatataacgGC-AAGTAGTGAAAC-----------ACGACA---TTTTGTTT-A--TATTAGAAGT--TCTGTGAA---GTGA-AGATTTTCTATATG-T-TTTTATCG-T-TCAACTGTCAGAAGAAAA-GTG-----AT--TT-GTTTGGCGGGAATTGGAAATTG-----TTAATTT-----------------------------------------CACTGATCACTCACTCATTCGCTCAATTACTTCGTGCAAG-CATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAACAAAAAC-------AATACAAACGGACCATAAATC---TTTGTTACACA--TGCCAGAGTAT----TTGTGACCAGGAGGCTCGCAACTAAAGTTTAAAATAC-T--TAATG--TGGCA--AAAAGCAAGCCCTGg
gi|11 : ttCCAGACTGA-T-C-AGT-AAGTAGC-AAACGATGAAGTAGTAAAAAA---TTGA--T--G--CATTAGTAAA--TCT----A---CTCA--TATTTTCTACACG-C-TGCCGTCG-CATTGACTGGCAAAAGAAAA-GTGCCTAGATGGTTAG--TG--------TAGA--------------------CATCAT------------------GCAACAACGTCG---AC--------CACCCATTCGCTCAATAACTT--------ACATTCATG-----TATATATATACG--AA-T-ACACTGACATCACAACACAAAC-------AATTGAAACAGACTATAGATT---TAT-TTATACA--TGCCAG-GTACTTAATTGTGAGCAGGGGGCTCGCAACTATAAATAATACTAC-C--CAATG--TGGCC--AAAAGTAAGCCgtcac
gi|12 : ATACACGTGATCTATGGTCGTTGGAGTAATTTAAAC------GATCGTGT--G--A--G--GGATT--T-TAG-----GGTTTATATGCAGT-GTCTCCATGTATAGTATAAT-----CA--A--TATACAAAACAAGACAAGAACCTGTTACGATGCAGTACAATACATAATTTACAAAATATGAAAACAACGATTACGACAAAACATCAATCAA-TTCACGCAATATACATGTCATTCATTTCACACAATGCAAATACTGTTCCTT----ACAAG-GT-CAATTAA--AAT-ACAAGTTAT---------CCCGGCTGA-T-C-AGC-AAATAGTGAA
gi|13 : ACTGTCAGAAGAGAT-GTGTCGATATTGTCAGTCTGGCTCGAATTAAAAAGTG-----TTAGCTCACACATCAT------------------GCAATATAATcta
gi|13 : caaaagattatgacatcaagcatatcTTAGCTCA--CACATCATGCAATATA---AT------TATAT-----TG--GG-T-ACACTAACATCACAACACAAAC-------AATTGAAACAGAATGTAAAGT---TAT-TTATGCA--TGCCAGAATGC----GTGTGACCAGGAGGCTTGCATATATAAA-TACCATAT-A--CAATGACTAG----AAAAGTAAGCtatattgggtacactaacatcacaacacaaacaattgaaacagaatgtaaagttatttatgcatgccagaatgcgtgtgaccaggaggcttgcatatataaataccatatacaatgactagaaaagtaagcattggtcac
gi|14 : caaaagattatgacatcaagcatatcactgtcagaagagatgtgtcgatattgtcagtctggctcgaattaaaaagtgGACTGTCAGAAGAAAA-GTGTCAGGATGTTTACTTTGGCGGGAATTAGAAATTG-----TTTATTCACTCATCAT------------------GTAACAA-----------CATCACTCA-------AC-CAATAAATACGCGCATTACATACCT------T-TACA-T-ACA--GA-TTATGCTAACACCATAACACAAAC-------AATTGAAATAGACTA---------TTC-CCATATG--TATCAGAGTGC----TTGCAATCACGAGGCTCGCAACTGCAA--TAAA--------TAATG--C--CCGGAAAAGCAAGTCTTGAattggtcac
gi|15 : ATGGTTAGTTTG-------TTGGGAATTG-----TTAATTTATCCATCAT------------------GCAATAAAACATCTCATTTATCATTCACTCATTCGCTCAGTTATTTAGTGCAATACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAATACAAGC-------ATTTGAAACGGACTATAAATCTTTTTT-TTATATAATTGCCAGAGTAC----TTGTGAC---------------------TTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGtca
gi|16 : ACATG-----CACACA-A-TGA--G--T-GAGCAAATAGCACAACATAAAC-------AATTGAAACTGACTATAAAgt
gi|17 : cagtgtgaatatcaagataaacgagctgtgatgttttctttggtagacatttgagctaatcaaataatcattaatccgtaccatcaaatataccacgaATATAAGTTGCCGATGGTCGTCAGATTAAT---GAC--TACAGATCG-GT--GATA--G--G---T--T-TAG-----AGTTTA-ATGCAGatta
gi|19 : attttaatatgaatttgtatacacaaatagctacaggcctatgaatactgAGAAAGTTAGTTTGGCATAAGTTTGAGACTA-----TTAATTCACCTATCAT---------------------------TTGCTCATTCGCCA---ACACA------CAATAACTGCATATTATACATACA-G------ATACA-
gi|2 : aTCA-ATCAAG---AAC--TA-AGATCG-GTTAG--G--G--G--TT--TATCG-----GGTTTA-ATGCAGT-AT-----TATATG------------CT--G--TTTCCACTATA-GACAAAA----------------------ACAT----TACAAGACATGAAAACAACGGTTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCATACATTTCACATAATACAAATACGGTT--TT----A-AAT-GA-GA-TAAA--AAT-ACAAATAAA---TGCTTACCAGTCTGA-T-T-AATTAAGAAGCCAAAC-----------AAGACAA--TTTC--TT-A--TATAAGAAGA--TCTGTGA---------AGATTTTCTATTTG-T-CCTCATCA-T-TCAACTATCAGAAGAAAA-GTACCTAGTTGGTTAGTTTGGCGGGAATTGAAAATTG-----TTAATTTACCCGTCAA------------------GCAATAAAATTGCTCACTCATCACTCACTCATTCGCTCAATTAATT-GTACAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAA-------CACTGAAACGGACTCTAGATC---TTT-TTACTCC--TGCCAGAGTGA----TTGTAACCAGGAGGCTAGCAACT--AATTTCAAATAC-C--CAATG--TGGCC--AAAAGCAAGCCCTG
gi|20 : gtgtgtgtgtgcatgctggcgtgtttagtatgtgagtttgtaaatgtgaacctctcacatgttataatgaatttgtatata--TACCAGAATAC----GTGTGATCAAGAGGCTCGCAACTATAAATTATGATAC-C---AATA--TATTC--AAAAGTAAGCCCTGgtc
gi|21 : CAGAGTGC----ATGTGACCAGAAGGCTCGCAACTA-AATTT-AAAT---------TG--TGGCC--AAAAGCAAGCCCTGgtca
gi|22 : TGC----TTGTAGCCAGGAGGCTCGCAACTATAAATTATAATAC-A--CAGTG--TGACC--GAAAGTAATCCCTGgtca
gi|3 : ATATATGTGACCGATGGTCATCAGAGCAAT---AACAATA-CGATCG-GT--G--A--G--GGATT--T-TAG-----GGTTTA-ATACAGT-GT-----TGTAT-------T-----CT--GAATATATATTATGAGATCATAACCTGTAACAATACAGTACGATACATAATTAACAAGACATGAAAATAA-AATTAGGACAAAACATCAATCAATT-CACTCAGTATACAATCCAAACATTTCACAAAATACAAATACAGTT-CTT----G-ACTAGATAAATCAA--ATT-ACAAGTAAT---TTATTACCAGGCTGA-T-C-AGT-AAGTAGTGAA-C-----------AAAAAA---ATAT--G--A--TATGAGTAAA--TCT---------TCACAGATTTTCTAAAGG-T-TGCTGTCGCT-TCGACTGGCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCAGGTGTTAGAAATTG-----TTAGTTTACCCATCAT------------------GTAACAAAATCAGTAAC--ATTACTCACTCATTCACTCAGTAACTTTGTGCAATACATACATG-----TATATA-T-ACA--GA-T-ACACTGACATCACAACACACAC-------AATTGAAACGGACTATAGATC---TAT-TTATACA--TGCCAGAGTAC----TTGTGACTAGGAGGCTTGCAACTATGAATTATAATAC-T--TAATG--TGGCC--AAAAGTAAGCCCTG
gi|4 : atataattgacattctgacacATATATGTGGCCGATGGTGGTTATATCAAG---AAC--TC-AGATCG-GT--G--AAGG--G--TTAAT-TTG-----GGTTTA-ATGCAGT-TC-----T-TATA------CG----CT--G--TTTACACTA-AAGACAAAAACCTGCAACAACAC-GTACGGTACATAAATTACAAGACATGAAAACAACGATTACGACAAA-CTTCAAACAATTTTACGCGATACA-AATTCATACATAGCACATGATACAATTACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACTACGCTGA-T-TTAGT-AAGTAGCGAAAC-----------AAGACAATTTTTT--TT-A--TATTAGAAAA--TCTGTGAA---GT-------------TAAG-T-CCTTATCG-T-TCAACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTCTGGCGGGAATTGGAAATTG-----TTAATTTACCTACCAT------------------GC-----------TCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACATTGACATCACAAAACAAAC-------AACTGAAACGAATTATAGATC---TTT-TTAgtc
gi|5 : tgagaacaactataattaaaataaaagctattacgtacattcaagtttattattatatgtacgtgtttagccacaacttaaaagaaaaagctagtatgataaattaatacagACATATGTGGCAGATGGTGGTTATATCAAG---AAC--TA-AGACCG-TT--G--A--G--G--TT--T-TTTTTTTTGGTTTA-ATGCAGTTGT-----TATACA------TGTACTCT--G--TTTACACTATAA-ACAAAAACCTGCAACGACACAGTACGATACATCAATTACAAGCAATGAAAACAACGATTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCACACATTTTACATAATACAAATACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACAAGGCTGA-TAT-AGT-AAGTAGCGAAAC-----------AA-------TTAT--TT-A--TATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTATATG-T-CCTTATCG-T-TCAATTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCTGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----CATACA-A-ACA--GA-T-GCACTGACATCGC--TACAAAC-------AATTGGAACGGACTATAGATG---TTT-TTACACA--CGCCAGAGTAC----TTGTGACCAGGAGGCTTGCAACTAAAATTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|6 : caTGGTCATCAAAGCAAT---AACAATA-AGATCG-GT--G--G--G--G--TT--T-TAG-----GATTTA-ATGCAGT-GT-----AGTAT-------T-----CTTAA--TATATATTATAAGACAAGAACCTGTAATGATACAGCACAATACGTAGTTTACAAGACATGAAAACAACAATTACGATAAAACATCAATCAA-TGCACATGATAC---------ACATTTCACACAATACAAATACTGTT-CTTTAGAA-AAT----ACATTAA--AGT-ACAAGTAAT---TCCTTACCAAGCTGA-T-C-AGC-AAGTAGTG-AAC-----------AATAAA---ATG------A--TATGAGCAAA--TCT-T-------TGC-AGATTTTCTAAAGG-T-AACTGACGCT-TTAACTGTAAGAAGAAAG-GTGCCTAGATGGTTTGTTTGGCAGTAATTAGAAATGGTTAAATTAATTCACCCATCAT------------------ACAACAAAATCGCTCACTCATCACTCACTCATTTGCTCAATAACTTTGTGCAATACATACATGATACATGTATA-T-ACAATGA-T-ACACTAACTTCACCATGCAAAC------------AAACAGACTATAGATC---TAT-TTATATA--TGTCAGAGTAA----TTGTAACac
gi|7 : AGTACAAAAATAGTT-CTA----C-AGT-AA-GAA---A--AGTCACAAATAATAACTTCTTACCAGGCTGA-T-TTAGT-AAGTAGAGAAAC-----------AAGACA---TTTT--TTTA--CATTCGAAAA--TCTGTGAA---GTGA-AGATTTTCTTCATG-TTCTTTATCA-T-TCAACTGTCAGAAAAAAA-GTGCCTAATTGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACCCCCTAACTCAATTACTTTGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAC-------AATTGAAACGGACTATAGACC---TTT-TTACACA--CACCAGAATAC----CTGTGACCAGGAGGCTCGCAACTAAAATTTAAAATA
gi|8 : tcacattctctcaattgctttcaagaaattcCTGA-T-TTAGT-AAGTAGCGAAAC-----------AAGACA---TTTT--TT-A--TATTAGAAAA--TCTGTGGA---GTGA-AGATTTTCTATATGAT-CTTTATCG-T-TCAACTGTCAGAAGAAAAAGT---T-GATGGTGAGTT-GGCGGGAATCGGAAATTG-----TTAATTTACCCATCATGCAATATTAACCCCCTATGTAATAAAATCGCTTACTCATCACTCACTCATTCGATCAGTTACTTTGTGCAAAACATACGTG-----TATACA-A-TCA--GA-T-ACACTGACATCACATCACAAACAATTGAAAATTGAAACGGACTATAGATC---TTT-TTACACA--CGCCACAGTAC----TTGTGACCAACAGGATCGCAACTAAAATTTAAAATAC-C--TTATA--TGGCT--AAAAGCACGCTCTG
gi|9 : gtAAT-AA--AAT-GTATGAAAC---TCCTTAACAGGCTGAAT-C-GGTTAAATTATGAAAC---------------CA---TT-----T-AACTATCA--AAA--TC---GAA----T-A-AGATTGTCT----G-T-CC--ATTG-T-ACGACTGTCTAAAGAAAA-ATGCCGAGATGATTAGTTTGGCTAGAATTAGAAATTG-----TTAATTCACTCACTAT------------------Ggtc
gi|9 : acagtttacTCACTCACTATGTTCATTACATACACG-----T-TACA-T-GCT--GAGT-ACACTAATATCACAATATAAAC-------AATTGAAAGAGACTATAAA-------A-TTAAAAG--TGTCAGAGTGC----AGGTATTGAGGAGGCACGCACTCAGAAA-TAAAATACACTGTAATGACTGG----AAAAGTAAACCttcattacatacacgttacatgctgagtacactaatatcacaatataaacaattgaaagagactataaaattaaaagtgtcagagtgcaggtattgaggaggcacgcactcagaaataaaatacactgtaatgactggaaaagtaaacctaggtcac
blockSeqs : G G TTA AA CA T TA ATA . GA AA A TTTTT T T CTCCA G AGTATAATCAA A T A A T A A T T T AC T C T CC TAGAA A AGAT A T . C AAC G A TT T GATGAAGTAGT G C ATT TTGTTT AC . GTGAAGTGA T T A T TT C A A G TTAAA GCAATATTAACCCCCTAT C CG ATC T C G ATACA TAT AT G T AATTGAA TTT T G AT TTAA A T ACTGT AC GG
blockSeqs : G T . AA A . . AAG . GA . . . . . . A ATGTACTCTG T T A A T A T A T T AT T T G C AC A GT A A . . . T . AT T . A A A TTTTT . . GTGAAGTGA C C . . GC C . . T . . T AA TGC A C T . A . . . . . A . . . T A TT AC .
blockSeqs : G T . . C . . A . . . . . . . . G TCTGAA A C A A A A A T T T AC A A A C A C GA A C . . . G . TT . . G C . TCTT . . GTGAAGTGA T T . . CT . . . G . . C AA TGC C C T . T . . . . . A . . . T A CC . .
blockSeqs : T G . . A . . G . . . . . . . . A ACGCTG T C A C A . T A T T AT T T G C G A GA A G . . . G . TT . . A A . TTTT . . GTGGAGTGA A G . . GC . . . A . . T AA CAG A A T . A . . . . . T . . . C T AC . .
blockSeqs : T T . . A . . A . . . . . . . . G TCTTAA T T . A T . T A . G A C T G . A A GA A G . . . C . C . . G C . ATTT . . GTGAAGT T A . . CT . . . G . . T AA CGC T C T . A . . . . . T . . . T A CT . .
blockSeqs : A T . . A . . A . . . . . . . . . GCTG A . . . . . A T . . . . C T . A A AA A T . . . T . C . . T A . TTTT . . ACTCA T T . . CT . . . A . . C AA CGC A T A . A . . . . . T . . . T T CC . .
blockSeqs : . G . . . . . G . . . . . . A . C G . A . . . . C . T . . G C . GAT . . GAATA A G . . AC . . . G . . T AA CGC T C T . T . . . . . A . . . T A AC . .
blockSeqs : . . . . . . . C . . G C . ATG . . GTGA C T . . TT . . . T . . C AA CGC A C A . A . . . . . T . . . A A TT . .
blockSeqs : . C . . . C . G . . TCAC T T . . TT . . . A . . T AA CG T T A . A . . . . . T . . . A T CT . .
blockSeqs : . C . . . . . T . . TTGC . . . . C . . . G . . T . . T T T . T . . . . . A . . . A T CT . .
blockSeqs : . . G . . . . . A T A . A . . . . . T . . . G T T . .
blockSeqs : . T . . . . . T T A . A . . . . . T . . . . A C . .
blockSeqs : . . . . . T . T . T . . . . . . . . . . . . . .
blockSeqs : . . . C . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ** ** ** TTTT*** ** GTGAGTGA*****
originalCons : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AACAATA-AGATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAAAC-----------AAGACA---TTNT--TT-A--TATTAGAAAA--TCTGTGAA---GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
finalCons : NNATATATGTGGCCGATGGTCGTCAGANCAAT---AAC--TA-AGATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAAAC-----------AAGACA---TTTTTT---A--TATTAGAAAA--TCTGTGAGTGA-----AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTG-----TTAATTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGCAAACAATGATAACAGCTTGTGGAATTATATAAATACTAGTATGTTATTGTGCGTGTATCTAGTAGGTTCGCAACTATAAATATAATACACAATGACTGAAAAATAAGACTTGG
Unaligned ( gi|23 ): AAGCCAAATGCCTACTTTACCATACTGGCAATAAATT
Alignments
lowQualScore : 22 11 11111 11111 55555555555555555555 1 1 11 111111 111 2222222222222222222222 33333333333333 1 111111111111111111
lowQualScore : 4 1 00 9999 5 66 88888 66 33 66 5 0 22222 5 5 44444 1 33333333333333333333 1 0 0 0 2 1 0 1 3 2 1 1 2 1 1 2 1 2 33 111111 2 5 66 1 6 66 8 777 2 3 111 6 0 44 7777 4444444444444444444444 55 0 55 33333333333333 3 2 3 3 11 0 3 3 1 66666 999999999999999999 2 22 111 0 1 3 1 66666 666 33 2 2 8888888 555 2 2 0 33 5555 5 4 77777 77 33
lowQualScore : . . .. .... . .. ..... .. .. .. . . ..... . . ..... . .................... . . . . . . . . . . . . . . . . . . .. ...... . . .. . . .. . ... . . ... . . .. .... ...................... .. . .. .............. . . . . .. . . . . ..... .................. . .. ... . . . . ..... ... .. . . ....... ... . . . .. .... . . ..... .. ..
lowQualScore : 5 0 66 1111 0 99 55555 99 88 99 0 5 55555 0 7 33333 7 66666666666666666666 0 4 1 4 4 4 4 4 0 0 0 0 0 7 7 4 0 2 88 555555 0 0 44 9 9 11 9 888 6 6 888 7 1 66 7777 2222222222222222222222 00 1 00 55555555555555 5 3 6 6 99 9 6 1 5 77777 777777777777777777 2 11 888 4 0 7 9 22222 444 77 7 7 7777777 000 0 9 5 99 3333 5 5 88888 99 99
consensus : NNATATATGTGGCCGATGGTCGTCAGANCAATAACAATA-A--GATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAA--AC----AAG------ACA---TTTT--TT-A--TATTAGAAAA--TCTGTG-A----GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
Reference ( family-2193 ) : NNATATATGTGGCCGATGGTCGTCAGANCAATAAC--TA-A--GATCG-GT--G--A--G--G--TT--T-TAG-----GGTTTA-ATGCAGT-GT-----TGTATA------T-----CT--G--TNTACACTATAAGACAAGAACCTGTAACGATACAGTACGATACATAANTTACAAGACATGAAAACAACGATTACGACAAAACNTCAANCAATTTCACGCGATACACAATTCATACATTTCACANAATACAAATACGGTT-CTT----A-AAT-GA-GAATNAA--AAT-ACAAGTAAT---TNCTTACCAGGCTGA-T-C-AGT-AAGTAGCGAA--AC----AAG------ACA---TTTT--TT-A--TATTAGAAAA--TCTGTG-A----GTGA-AGATTTTCTANANG-T-CNTTATCG-T-TCGACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAACAAAATCGCTCACTCATCACTCACTCATTCGCTCAATNACTTCGTGCAANACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCACAACACAAAC-------AATTGAAACGGACTATAGATC---TTT-TTACACA--TGCCAGAGTAC----TTGTGACCAGGAGGCTCGCAACTANAANTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|1 : GTGACCGATAATCGTCAGAGCAATAACAATA-T--GATTG-GT--G--A--GTGG--TT--T-CAG-----GGTTTA-ATGCAGT-GT-----TGTAT-------T-----CTCAG--TATATATTATAAGACAAGAACTTGAAATGATACAGTATAAAACATAAATTACAAAACATGAAAACAACGATTACGACAAAACATCAATCAATT-CACGCAAAATGCAATTCACACGTTTCACAAATTACAAATATAGTT-CCT----A-G-C-GA-GA-TAAATTAATTGCAAGTAGT---TTCCTGCCAGGCTAA-T-C-AGC-AAGTAGTGAA---C----AAT------AAA---TT-------A--TAATAAAAAACATATGTT-AATCTGCGC-AGATTTTCTAAAGG-T-TGCTGTTGCT-TTGGCTGTCAGAATAAAA-GTACCTAGATGGTTACATTGGCGGAAATAAGAAATAGATAA-----TTTACACATCAT------------------GCAACAAATTTGCTCACTCAACACTCACTCATTCGCTCAATAACGTCGTGCAATACATATATG-----TATTTA-T-ACC--GA-T-ACACTTACATCACAACACAAAC-------AATTGAAACCGATTATAGATA---TAT-TTATACA--TGCCAGAGTAC----TTGTGACCAGGAAGCTCGCAACTATAAATTAAGATAC-C--CAATG--TGGCC--AAAAGTAGGCCCTG
gi|10 : atttttttatgtattttagtctcatccacacatgtacgagtataatgaacgggtacatataacgGC-AAGTAGTGAA--AC----ACG------ACA---TTTTGTTT-A--TATTAGAAGT--TCTGTG-AA---GTGA-AGATTTTCTATATG-T-TTTTATCG-T-TCAACTGTCAGAAGAAAA-GTG-----AT--TT-GTTTGGCGGGAATTGGAAATTGTTAA-----TTT-----------------------------------------CACTGATCACTCACTCATTCGCTCAATTACTTCGTGCAAG-CATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAACAAAAAC-------AATACAAACGGACCATAAATC---TTTGTTACACA--TGCCAGAGTAT----TTGTGACCAGGAGGCTCGCAACTAAAGTTTAAAATAC-T--TAATG--TGGCA--AAAAGCAAGCCCTGg
gi|11 : ttCCAGACTGA-T-C-AGT-AAGTAGC-AA--ACGATGAAGTAGTAAAAA---ATTG--AT-G--CATTAGTAAA--TCT----A----CTCA--TATTTTCTACACG-C-TGCCGTCG-CATTGACTGGCAAAAGAAAA-GTGCCTAGATGGTTAG--TG--------TAGA--------------------CATCAT------------------GCAACAACGTCG---AC--------CACCCATTCGCTCAATAACTT--------ACATTCATG-----TATATATATACG--AA-T-ACACTGACATCACAACACAAAC-------AATTGAAACAGACTATAGATT---TAT-TTATACA--TGCCAG-GTACTTAATTGTGAGCAGGGGGCTCGCAACTATAAATAATACTAC-C--CAATG--TGGCC--AAAAGTAAGCCgtcac
gi|12 : ATACACGTGATCTATGGTCGTTGGAGTAAT--T--TA-AACGATCGTGT--G--A--G--GGATT--T-TAG-----GGTTTATATGCAGT-GTCTCCATGTATAGTATAAT-----CA--A--TATACAAAACAAGACAAGAACCTGTTACGATGCAGTACAATACATAATTTACAAAATATGAAAACAACGATTACGACAAAACATCAATCAA-TTCACGCAATATACATGTCATTCATTTCACACAATGCAAATACTGTTCCTT----ACAAG-GT-CAATTAA--AAT-ACAAGTTAT---------CCCGGCTGA-T-C-AGC-AAATAGTGAA--
gi|13 : ACTGTCAGAAGAGAT-GTGTCGATATTGTCAGTCTGGCTCGAATTAAAAAGTGTTAG-----CTCACACATCAT------------------GCAATATAATcta
gi|13 : caaaagattatgacatcaagcatatcTTAGCTCA--CACATCATGCAATATA---AT------TATAT-----TG--GG-T-ACACTAACATCACAACACAAAC-------AATTGAAACAGAATGTAAAGT---TAT-TTATGCA--TGCCAGAATGC----GTGTGACCAGGAGGCTTGCATATATAAA-TACCATAT-A--CAATGACTAG----AAAAGTAAGCtatattgggtacactaacatcacaacacaaacaattgaaacagaatgtaaagttatttatgcatgccagaatgcgtgtgaccaggaggcttgcatatataaataccatatacaatgactagaaaagtaagcattggtcac
gi|14 : caaaagattatgacatcaagcatatcactgtcagaagagatgtgtcgatattgtcagtctggctcgaattaaaaagtgGACTGTCAGAAGAAAA-GTGTCAGGATGTTTACTTTGGCGGGAATTAGAAATTGTTTA-----TTCACTCATCAT------------------GTAACAA-----------CATCACTCA-------AC-CAATAAATACGCGCATTACATACCT------T-TACA-T-ACA--GA-TTATGCTAACACCATAACACAAAC-------AATTGAAATAGACTA---------TTC-CCATATG--TATCAGAGTGC----TTGCAATCACGAGGCTCGCAACTGCAA--TAAA--------TAATG--C--CCGGAAAAGCAAGTCTTGAattggtcac
gi|15 : ATGGTTAGTTTG-------TTGGGAATTGTTAA-----TTTATCCATCAT------------------GCAATAAAACATCTCATTTATCATTCACTCATTCGCTCAGTTATTTAGTGCAATACATACATG-----TATACA-A-ACA--GA-T-ACACTGACATCAAAATACAAGC-------ATTTGAAACGGACTATAAATCTTTTTT-TTATATAATTGCCAGAGTAC----TTGTGAC---------------------TTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGtca
gi|16 : ACATG-----CACACA-A-TGA--G--T-GAGCAAATAGCACAACATAAAC-------AATTGAAACTGACTATAAAgt
gi|17 : cagtgtgaatatcaagataaacgagctgtgatgttttctttggtagacatttgagctaatcaaataatcattaatccgtaccatcaaatataccacgaATATAAGTTGCCGATGGTCGTCAGATTAATGAC--TACA--GATCG-GT--GATA--G--G---T--T-TAG-----AGTTTA-ATGCAGatta
gi|19 : attttaatatgaatttgtatacacaaatagctacaggcctatgaatactgAGAAAGTTAGTTTGGCATAAGTTTGAGACTATTAA-----TTCACCTATCAT---------------------------TTGCTCATTCGCCA---ACACA------CAATAACTGCATATTATACATACA-G------ATACA-
gi|2 : aTCA-ATCAAGAAC--TA-A--GATCG-GTTAG--G--G--G--TT--TATCG-----GGTTTA-ATGCAGT-AT-----TATATG------------CT--G--TTTCCACTATA-GACAAAA----------------------ACAT----TACAAGACATGAAAACAACGGTTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCATACATTTCACATAATACAAATACGGTT--TT----A-AAT-GA-GA-TAAA--AAT-ACAAATAAA---TGCTTACCAGTCTGA-T-T-AATTAAGAAGCCAA--AC----AAG------ACAA--TTTC--TT-A--TATAAGAAGA--TCTGTG-A---------AGATTTTCTATTTG-T-CCTCATCA-T-TCAACTATCAGAAGAAAA-GTACCTAGTTGGTTAGTTTGGCGGGAATTGAAAATTGTTAA-----TTTACCCGTCAA------------------GCAATAAAATTGCTCACTCATCACTCACTCATTCGCTCAATTAATT-GTACAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAA-------CACTGAAACGGACTCTAGATC---TTT-TTACTCC--TGCCAGAGTGA----TTGTAACCAGGAGGCTAGCAACT--AATTTCAAATAC-C--CAATG--TGGCC--AAAAGCAAGCCCTG
gi|20 : gtgtgtgtgtgcatgctggcgtgtttagtatgtgagtttgtaaatgtgaacctctcacatgttataatgaatttgtatata--TACCAGAATAC----GTGTGATCAAGAGGCTCGCAACTATAAATTATGATAC-C---AATA--TATTC--AAAAGTAAGCCCTGgtc
gi|21 : CAGAGTGC----ATGTGACCAGAAGGCTCGCAACTA-AATTT-AAAT---------TG--TGGCC--AAAAGCAAGCCCTGgtca
gi|22 : TGC----TTGTAGCCAGGAGGCTCGCAACTATAAATTATAATAC-A--CAGTG--TGACC--GAAAGTAATCCCTGgtca
gi|3 : ATATATGTGACCGATGGTCATCAGAGCAATAACAATA-C--GATCG-GT--G--A--G--GGATT--T-TAG-----GGTTTA-ATACAGT-GT-----TGTAT-------T-----CT--GAATATATATTATGAGATCATAACCTGTAACAATACAGTACGATACATAATTAACAAGACATGAAAATAA-AATTAGGACAAAACATCAATCAATT-CACTCAGTATACAATCCAAACATTTCACAAAATACAAATACAGTT-CTT----G-ACTAGATAAATCAA--ATT-ACAAGTAAT---TTATTACCAGGCTGA-T-C-AGT-AAGTAGTGAA---C----AAA------AAA---ATAT--G--A--TATGAGTAAA--TCT----------TCACAGATTTTCTAAAGG-T-TGCTGTCGCT-TCGACTGGCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCAGGTGTTAGAAATTGTTAG-----TTTACCCATCAT------------------GTAACAAAATCAGTAAC--ATTACTCACTCATTCACTCAGTAACTTTGTGCAATACATACATG-----TATATA-T-ACA--GA-T-ACACTGACATCACAACACACAC-------AATTGAAACGGACTATAGATC---TAT-TTATACA--TGCCAGAGTAC----TTGTGACTAGGAGGCTTGCAACTATGAATTATAATAC-T--TAATG--TGGCC--AAAAGTAAGCCCTG
gi|4 : atataattgacattctgacacATATATGTGGCCGATGGTGGTTATATCAAGAAC--TC-A--GATCG-GT--G--AAGG--G--TTAAT-TTG-----GGTTTA-ATGCAGT-TC-----T-TATA------CG----CT--G--TTTACACTA-AAGACAAAAACCTGCAACAACAC-GTACGGTACATAAATTACAAGACATGAAAACAACGATTACGACAAA-CTTCAAACAATTTTACGCGATACA-AATTCATACATAGCACATGATACAATTACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACTACGCTGA-T-TTAGT-AAGTAGCGAA--AC----AAG------ACAATTTTTT--TT-A--TATTAGAAAA--TCTGTG-A---------AG---TT----AAG-T-CCTTATCG-T-TCAACTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTCTGGCGGGAATTGGAAATTGTTAA-----TTTACCTACCAT------------------GC-----------TCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACATTGACATCACAAAACAAAC-------AACTGAAACGAATTATAGATC---TTT-TTAgtc
gi|5 : tgagaacaactataattaaaataaaagctattacgtacattcaagtttattattatatgtacgtgtttagccacaacttaaaagaaaaagctagtatgataaattaatacagACATATGTGGCAGATGGTGGTTATATCAAGAAC--TA-A--GACCG-TT--G--A--G--G--TT--T-TTTTTTTTGGTTTA-ATGCAGTTGT-----TATACA------TGTACTCT--G--TTTACACTATAA-ACAAAAACCTGCAACGACACAGTACGATACATCAATTACAAGCAATGAAAACAACGATTACGACAAA-CTTCAAACAATTTCACGCGATACATAATTCACACATTTTACATAATACAAATACGGTT--TT----A-AAT-GA-GAATGAA--AAT-ACAAATAAT---TGCTTACAAGGCTGA-TAT-AGT-AAGTAGCGAA--AC----AA-------------TTAT--TT-A--TATTAGAAAA--TCTGTG-AA---GTGA-AGATTTTCTATATG-T-CCTTATCG-T-TCAATTGTCAGAAGAAAA-GTGCCTAGATGGTTAGTTTGGCTGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACTCATTCGCTCAATTACTTCGTGCAAAACATACATG-----CATACA-A-ACA--GA-T-GCACTGACATCGC--TACAAAC-------AATTGGAACGGACTATAGATG---TTT-TTACACA--CGCCAGAGTAC----TTGTGACCAGGAGGCTTGCAACTAAAATTTAAAATAC-C--TAATG--TGGCC--AAAAGCAAGCCCTGA
gi|6 : caTGGTCATCAAAGCAATAACAATA-A--GATCG-GT--G--G--G--G--TT--T-TAG-----GATTTA-ATGCAGT-GT-----AGTAT-------T-----CTTAA--TATATATTATAAGACAAGAACCTGTAATGATACAGCACAATACGTAGTTTACAAGACATGAAAACAACAATTACGATAAAACATCAATCAATG-CACATGATACACA---------TTTCACACAATACAAATACTGTT-CTTTAGAA-AAT-AC---ATTAA--AGT-ACAAGTAAT---TCCTTACCAAGCTGA-T-C-AGC-AAGTAGTGAACAAT----AAA------A-----------TG-A--TATGAGCAAA--TCT-T--------TGC-AGATTTTCTAAAGG-T-AACTGACGCT-TTAACTGTAAGAAGAAAG-GTGCCTAGATGGTTTGTTTGGCAGTAATTAGAAATGGTTAAATTAATTCACCCATCAT------------------ACAACAAAATCGCTCACTCATCACTCACTCATTTGCTCAATAACTTTGTGCAATACATACATGATACATGTATA-T-ACAATGA-T-ACACTAACTTCACCATGCAAAC------------AAACAGACTATAGATC---TAT-TTATATA--TGTCAGAGTAA----TTGTAACac
gi|7 : AGTACAAAAATAGTT-CTA----C-AGT-AA-GAA---A--AGTCACAAATAATAACTTCTTACCAGGCTGA-T-TTAGT-AAGTAGAGAA--AC----AAG------ACA---TTTT--TTTA--CATTCGAAAA--TCTGTG-AA---GTGA-AGATTTTCTTCATG-TTCTTTATCA-T-TCAACTGTCAGAAAAAAA-GTGCCTAATTGGTTAGTTTGGCGGGAATTGGAAATTGTTAA-----TTTACCCATCAT------------------GCAATAAAATCGCTCACTCATCACTCACCCCCTAACTCAATTACTTTGTGCAAAACATACATG-----TATACA-A-ACA--GA-T-ACACTGACACCACAACACAAAC-------AATTGAAACGGACTATAGACC---TTT-TTACACA--CACCAGAATAC----CTGTGACCAGGAGGCTCGCAACTAAAATTTAAAATA
gi|8 : tcacattctctcaattgctttcaagaaattcCTGA-T-TTAGT-AAGTAGCGAA--AC----AAG------ACA---TTTT--TT-A--TATTAGAAAA--TCTGTGGA----GTGA-AGATTTTCTATATGAT-CTTTATCG-T-TCAACTGTCAGAAGAAAAAGT---T-GATGGTGAGTT-GGCGGGAATCGGAAATTGTTAA-----TTTACCCATCATGCAATATTAACCCCCTATGTAATAAAATCGCTTACTCATCACTCACTCATTCGATCAGTTACTTTGTGCAAAACATACGTG-----TATACA-A-TCA--GA-T-ACACTGACATCACATCACAAACAATTGAAAATTGAAACGGACTATAGATC---TTT-TTACACA--CGCCACAGTAC----TTGTGACCAACAGGATCGCAACTAAAATTTAAAATAC-C--TTATA--TGGCT--AAAAGCACGCTCTG
gi|9 : gtAAT-AA--AAT-GTATGAAAC---TCCTTAACAGGCTGAAT-C-GGTTAAATTATGAA--AC--------------CA---TTT------AACTATCA--AAA--TC---G-A----AT-A-AGATTGTCT----G-T-CC--ATTG-T-ACGACTGTCTAAAGAAAA-ATGCCGAGATGATTAGTTTGGCTAGAATTAGAAATTGTTAA-----TTCACTCACTAT------------------Ggtc
gi|9 : acagtttacTCACTCACTATGTTCATTACATACACG-----T-TACA-T-GCT--GAGT-ACACTAATATCACAATATAAAC-------AATTGAAAGAGACTATAAA-------A-TTAAAAG--TGTCAGAGTGC----AGGTATTGAGGAGGCACGCACTCAGAAA-TAAAATACACTGTAATGACTGG----AAAAGTAAACCttcattacatacacgttacatgctgagtacactaatatcacaatataaacaattgaaagagactataaaattaaaagtgtcagagtgcaggtattgaggaggcacgcactcagaaataaaatacactgtaatgactggaaaagtaaacctaggtcac
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): AGCAAACAATGATAACAGCTTGTGGAATTATATAAATACTAGTATGTTATTGTGCGTGTATCTAGTAGGTTCGCAACTATAAATATAATACACAATGACTGAAAAATAAGACTTGG
Unaligned ( gi|23 ): AAGCCAAATGCCTACTTTACCATACTGGCAATAAATT