lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 222 666666666 111 000000000000000000000000000000000000000000000000000000000000000000000000 222222 3333333333333333 111 11111 111 333333333333333 111111 1 111 1111 33333 33333333333333333333333 1111 22222222222 1 666666666666666666 11 222 1 66666666666666666666666666666666666666666666666666666666
lowQualScore : 2 4 000 8 1 111111111 1 6 3 5 777 5 99 0 666666666666666666666666666666666666666666666666666666666666666666666666 99 2 666666 4 2222222222222222 0 66 000 888 22222 000 0 777777777777777 3 999999 5 99 99 99 6 99 111 2222 9 8 77 11111 11 6 3 0 222 66 66666666666666666666666 7 0 6 77 1 0000 0 1 33333333333 5 0 4 77 2 1 5 6 2 1 333333333333333333 0 6 22 66 22 888 4 4 0 0 3 77777777777777777777777777777777777777777777777777777777 3
lowQualScore : . . ... . . ......... . . . . ... . .. . ........................................................................ .. . ...... . ................ . .. ... ... ..... ... . ............... . ...... . .. .. .. . .. ... .... . . .. ..... .. . . . ... .. ....................... . . . .. . .... . . ........... . . . .. . . . . . . .................. . . .. .. .. ... . . . . . ........................................................ .
lowQualScore : 0 2 555 4 4 333333333 7 7 5 7 666 0 99 2 000000000000000000000000000000000000000000000000000000000000000000000000 22 5 000000 3 7777777777777777 2 99 444 888 55555 666 7 222222222222222 3 222222 7 22 22 22 7 88 777 5555 0 1 99 00000 99 6 0 3 777 00 77777777777777777777777 9 6 2 66 1 6666 2 4 88888888888 0 1 4 66 6 0 0 0 3 0 222222222222222222 1 8 22 11 88 222 4 4 8 9 2 55555555555555555555555555555555555555555555555555555555 8
consensus : TATTTACATTTCTAC--TGCAATCGGCCTA---GT--AAATGA-ACTATA-TAGATT--NACTGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGG--CTNCACGAAT-TTGTTTTGCTGATGAGACGTCACGT-TGCC--GTTA-GTTTCACGTGACGTTTGC---CGTAA-----GTTGTCCTA-A-AAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAA--CG-TCGCCGTT---ACATTCATGACATTNGCTTTGCGGT--TTAATN--CGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAA-C-GTA---ATAGTTTTATCTAAAATAGTTAGAGAA----TATAATGTA-----------AA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGAT-GAAAAACATTAGGCCAGTTTAATGTTGCCGAGAAGCCNTTC---GGGCTTCNCG--A--ACATTAAAC-TNGCC-TAATG-TTTTTCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCT--T-A--A------------T-----A---ACAAT-----ATA-ACTN-GTT---TATTTTAAATAT
Reference ( gi|2 ) : TATTTACATTCCCAA--TGCAATAAGCCTATTAGT--AAATGA-ACTATA-TAGATT--TACTGCATTTCATT-TCCAAATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGG--TTGCACGGAT-TTGTTTTGCTGGTGAGACGTCCCGT-TGCC--GTTA-GTTTCACGTGACGTTTGC---CGTAA-----GTTGTCCTA-G-AAG---------TGCGCGCA------CTTATTCATTATG--TTG--ACAA--CG-TCGTCGTT---ACATTCGTGACATTTGCTTTTCGGT--TTATTG--CGTATACTTTGCTTTTTAAATATCAAAATGGC-AAAA-ATAA-C-GTA---ATACTTTTATCTAAGATAGTTGGAGAA----TATAATGTA-----------AA-TATAAGG-ATTAAAAGCCGAATTTTTAGTTTTCATCGAGTGAT-GAAAAGCATTAGGCTAGTTTAATGTTGCCTAGAAGCCGTTC---GGGCTTCACG--A--ACATTAAAC-ATGCC-TAATG-TTTTGCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCT--T-A--A------------T-----A---ACAAT-----ATA-ACTG-ATT---CATTTTAAATAT
gi|3 : TATTTACATTTTTAC--TGCAATCGGCCTA--------AATGA-ACTTTA-TAGCTT--AAATGCATTTCATA-TCCCAATGAAAAACATTTTTGCAGCTGGGCGGAGC--------------T-----------------AAAA-AGGACCAG-------TTTGCATTTCATTGG--TTGCACTATT-TTGTTTTG--------ACAT------TACC--ATTA-GGTTAACATCATGTTTGC---GGTAA-----GT----CTATGCAAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAA--CA-TTGCTGTT---ACATTCAAGGCATTAGCTTTGTGGT--TTATTATACGAATAATTTGCATTTCAAACATCAAAATCGT-AAAATAAAA-CTGTA---ATAGTTTTATCTAAAATAGTTAAAAAG----TTTCATGTA-----------AA-TATGAGG-GCTAAAAGCCAAATTTAGAGTTTTCATCGAGTGAT-GAAAAACATAAGAATAATTTAATGTTGCTGAGAAGCCCT-----GGTCT---CG--A--TC--TG------GTC-TAATG-TTTTAAATCACCCAATGGAACCTAAAAATGGGGCTTTTAATCCA--T-A--A------------
gi|5 : ATTCACATTCCAAC--TGCAATCAGCCTA--------AATGA-ACTATA-TAGATT--TACTGCATTTCATT-TTCCAATGAAAAACA-------------------C--------------TTGCAGCTGGGCGGAGCTAAAA-AGGACCAG-------TTTGCATTTCATTGG--TTGTATGAAT-TTGTTTTGCTGATGAGACGTCAGGT-TGCC--GTTA-GTTTCATATGGCGTTTGT---CATAT-----GTTGTCCTA-C-AAA---------TGCGTGCA------CTTATTTAGTATG--TTG--ACAA--CG-TCGCCGTT---ACATTCATGACATTAGCTTTGCAGT--TTAATT--TGTACAATTTGCTTTTTAGTTATCAAAATTCCAAAAA-ATTA-C-GTC---ATAGTTTTATCTGAAATAGTAAGAAAA----TATAATGTA-----------AA-TATCAGG-ATTAAAAGCCGAATGTTGAGTTTTCATCGGTTGAT-GAAAAACGTTAGGGCAGTTTAGTGTTGTCGAGAAGCCCTTT---GGGCTTCACG--A--ACATTAAAC-TGGCC-TAATG-TTTTgtg
gi|6 : ATTTACATTTCCAT--GGCAACAGGTCTA--AAT--AAGTTACAAT-TA-TAGATTA-TA-TGCATTTCATT-TTCTGATGAAAAACA-------------------TGCAGTTGGGCGGAGC-----------------ATAATATGATCTG-------TTTACATTTCATTTACTTTTCA------TTGTTTTGATGGTGCGTCGTCACAT-TGTC--ATTAAGTTTAATGTGAAGTTTGC---TGTAA-----GTAG-CCTA-A-AAAAATAAAAAATATGTGCA------TTGATTCGATGTG--TTG--ACAA--TG-TCGCTGTT---CCAATGATGACATTGGCTTTGCGGG--TTAATT--CTTATAATCTGCTTT-----------------------ATAA----------TAGTTTTGTCCAAAACGGTTAGATAATTATTGTCATGTA-----------AA-TATAAAATATTAAAAGCACAATTTTGAGTGTTCATTGGGTAAT-GAAATACATTAGCCTAGTTTAATGTTGC
gi|7 : CATTTCTAAGTTGCAATCGGTCT-----T--AA-TGA-ACTATACTA-------ACTGCATTTCATT-TCGAGATAAAAAA
gi|1 : tt--TGTAATGAGAC-----GT--AAATGA-ACTATA-TAAATT--TACTGCATTTCATT-TCCTTATGAAAAACA-------------------C-----------------------------------------------------TTGCA--------G--CTGGGCGGA---------GCTAA--AAAGGACCAGT-TTCC--GTTT-GTTTCACATGACGTTTGC---CGTAA-----GTTTTCCTA-C-AAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAA--CG-TCGCCGTT---ACATTCATGGCATTGGCTTTGCGGT--TTAAGA--CGTATAAATTGTTTTTTAAATATCAAAATGGC--AAA-ATAA-C-GTA---ATAGTTATATCTAAAATAGCTACAGAA----TATAATGTA-----------AA-TATAAGG-ATTAAAAGC------------------CGGGTGAT-GCAAAACATAAGGCTAGTTTATTGTTGCCGAGAAGCCCTTC---GAGCGTCACG--A--ACATTAAAC-AGGCT-TTATGTTTTTTTATCACCCGATGAAAACTCAAAATGCCGCTTTTAATCCT--T-A--A------------TTAAAAA---AAAAT-----GTA-AATA-GT-----ATTCTGAATaatgtttgcaactgggctatataagtcagtttagcatacttatttgtcgaaggtgtatattttttattcaaacgtattatatttacaaacaacatatatatttatgtcactaaatatagccacgtttggcgcct
gi|9 : gATCAGTCTAAATGA-AGTATA-TAGAGCAACACTGCATATTATTAGCCAAAT--AAAACAT------------------T--------------T-----------------GCAC-ATGCGCAGAACTAAATATGCATTTTATTGG--CTCTACGATT-TTGTTTTGCtggagaactgtaaactttgggtatactaaaactgaaaaagaaaagaacatgaagaaattgaaaaataaa
gi|12 : tatcatatgaccattttgtttccccacagtaA-TAGATC--AACTGCATTTCATT-TCAAGATAAAAAA
gi|4 : catttctataaaatgcacacagcgtgctttgaaACTGCATTTCGTT-TCTTTATGAAAATCAATTGAATTTGGGTAGTG--C--------------T-----------------TAAA-GT-ACCAG-------TTTGCATTTCATTGG--CACCATG-ATGTTGCTTTGCTTTT-AG----CTTGTAGGAC--ATTACATTTCATGGGATGCTTAC---TGTAGCCTAGGTAGCCATA-A-AGA---------TGTGCACAACTGTGCTTATTCAACAGGGCTTGGAACAA--AG-TCACTATTCAAACA---ATGACATTAAATT---GGTAGCTA------G-ATACTTT--------AATATAAAAA-----AAAACATCATC-GTAGTTATTCTTTCATCTTAAATAATTTGAAAA----TATATTGTA-----------AATTATA-------------CAAA--TTGAGTTTTCATTGAAAGAT-GAAAAACATT-CTCTAGTCTA----------------GTTC---GGACTTCA----A--ACATTAATC-TAGCC----TG-TTTTTCATCACTGGAT-CAAACTCAAAATTATGCTACCATTCCT--GAA--A------------T-----A---AACAC-----A-A-ACTT-ATT---TACT---AATATacaattatagctataaacagt
gi|10 : tgttaatgatgtgcaatgttgaaacaatagaaTGTTTTGATGATACGGCGTCACGA-TGTCAAGT---GTTTTCCTTGTTGTTTGC---CGTAA-----ATTACCATA-A-ACG---------TGTGTGCA------CTCATTCAGTGTG--AT----CAATCCGATTGT-GTT---A-AT--GT-ATATTTACATTTCa
gi|16 : CGTCATTT-TGAC--CTGA-GTTTCACGGGACGTTTGC---CGTAA-----GTTGTCATA-
gi|15 : CC--GTGA-GTTTCACGCGACATTTGCCGGCGTAA-----GT
gi|1 : gagctaaaaaagaccaTTTATTTTTCAAT--TTCTT---CATGTTCTTTTCTTTTTCAGTTTTAGTATACC-CAAA-GT------T-----TACAGTTCTCCAA-----TTC-AGAA----TACTATTTACATTTTTTTTTAA-T-TAAGG-ATTAAAAGCGGCATTTTGAGTTTTCATCGGGTGATAAAAAAACATAAAGCCTGTTTAATGTT-CGT-GA---CGCTCGAAGGGCTTCTCGGCA--ACAATAAAC-TAGCC-TTATG-TTTTGCATCACC------------------CGGCTTTTAATCCT--T----A------------T-----ATTTACATT-----ATATTCTGTAGC---TATTTTAGATATat
gi|8 : gtgtaatgagacgtaaatgaactatataaatttactgcatttcatttccttatgaaaaacacttgcagctgggcggagctaaaaaggaccagtttccgtttgtttcacatgacgtttgccgtaagttttcctacaaatgcgtgcacttattcagtatgttgacaacgtcgccgttacattcatggcattggctttgcggtttaagacgtataaattgttttttaaatatcaaaatggcaaaataacgtaatagttT--TTAATG--AGT-TGTTCTATCTTTTAAG-ATCAAAATAG--GAAA-ATAA-C-GCA---ATAGTTTCATCTTAGGCAATTAGAAGA----TATAACATT-----------AT-AATAAGT-ATTAAAAGCCCACTTTTGAGATTTCATCGGGTGA
gi|13 : ctgctgtcaattttgcaaaaatatcagcgatataggtaaaacatcGATAG--GGAGCA----CACAAT-------------------TAAGG-ATTAAAAGCTGAATTTTGAGTTTTCATCG
gi|3 : cTATGG-ATTAAAAGCCCCATTTTTAGGTTCCATTGGGTGAT-TTAAAACATTAGACCAG----AT-----CGAGA--CCA------GGGCTTCTCAGCA--ACATTAAATTATTCT-TA-TG-TTTTTCATCACTCGATGAAAACTCTAAATTTGGCTTTTAGCCCTCAT-A--T------------T-----T---AC-AT-----GAA-ACTT-TTTAACTATTTTAGATAaattgcaaattattggttgattttaaatta
gi|4 : tatttacatttttactgcaatcggcctaaatgaactttatagcttaaatgcatttcatatcccaatgaaaaacatttttgcagctgggcggagctaaaaaggaccagtttgcatttcattggttgcactattttgttttgacattaccattaggttaacatcatgtttgcggtaagtctatgcaaatgcgtgcacttattcagtatgttgacaacattgctgttacattcaaggcattagctttgtggtttattatacgaataatttgcatttcaaacatcaaaatcgtaaaataaaactgtaatagtttAATTTTGAGTTTG-ATCCAGTGAT-GAAAAAC---AGGCTAGATTAATGTT---T-GAAGTC---------------CG--A--AC--TAGAC--TAGA-GAATG-TTTTTCATCTTTCAATGAAAACTC--AATTTG---TATAAT--T--T---------------------------ACAAT-----ATA-agtg
gi|5 : tgttaatgatgtgcaatgttgaaacaatagaaactgcatttcgtttctttatgaaaatcaattgaatttgggtagtgcttaaagtaccagtttgcatttcattggcaccatgatgttgctttgcttttagcttgtaggacattacatttcatgggatgcttactgtagcctaggtagccataaagatgtgcacaactgtgcttattcaacagggcttggaacaaagtcactattcaaacaatgacattaaattggtagctagatactttaatataaaaaaaaacatcatcgtagttattctttcatcttaaataatttgaaaaAAAACATTAGGCCAGTTTAATGTT-CGT-GAAGCC---CAAAGGGCTTCTCG--ACAACACTAAAC--TGCCCTAACG-TTTTTCATCAACCGATGAAAACTCAACATTCGGCTTTTAATCCTGAT-A--T------------T-----T---ACATT-----ATA-atgctaccattcctgaaataaacacaaacttatttactaatata
gi|6 : attcacattccaactgcaatcagcctaaatgaactatatagatttactgcatttcattttccaatgaaaaacacttgcagctgggcggagctaaaaaggaccagtttgcatttcattggttgtatgaatttgttttgctgatgagacgtcaggttgccgttagtttcatatggcgtttgtcatatgttgtcctacaaatgcgtgcacttatttagtatgttgacaacgtcgccgttacattcatgacattagctttgcagtttaatttgtacaatttgctttttagttatcaaaattccaaaaaattacgtcatagttttatctgaaatagtaagaaaa--A--ACATTAAAC-TAGGC-TAATG-TATTTCATTACCCAATGAACACTCAAAATTGTGCTTTTAATATT--T-T--A------------T-----A---
gi|8 : atttacatttccatggcaacaggtctaaataagttacaattatagattatatgcatttcattttctgatgaaaaacatgcagttgggcggagcataatatgatctgtttacatttcatttacttttcattgttttgatggtgcgtcgtcacattgtcattaagtttaatgtgaagtttgctgtaagtagcctaaaaaaataaaaaatatgtgcattgattcgatgtgttgacaatgtcgctgttccaatgatgacattggctttgcgggttaattcttataatctgctttataatagttttgtccaaaacggttagataattattgtcatgtaaaTCACCCGATGAAATCTCAAAAGTGGGCTTTTAATACT--T-ATTA------------T-----A---ATGTT-----ATA-TCTgc
gi|13 : ctgctgtcaattttgcaaaaatatcagcgatataggtaaaacatctttaatgagttgttctatcttttaagatcaaaataggaaaataacgcaatagtttcatcttaggcaattagaCCGATGAAAACTCAAAATTCAGCTTTTAATCCT--T-A--ATTGTGTGCTCCCT-----A---TCAATTGCAAATT-ATTG-GTT---GATTTTAAAT
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TACATTCACTTGGTACAATTTACATAAATTTCTTTACAGTTGAGTTATATGCATTTTTTTTTTTAATGAAATAGATGTAGATGAGCGAATCAAACATG
Unaligned ( gi|14 ): GGATCCAATCAAAAAGTATGATACATGTAATTAGAGTTTATATCTAATTTTTCAAG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111
lowQualScore : 444444 1111 666666666666666666666666666666666666666666666666666666 1111111 22222222 11111 222222222 111111 111 222222 111111 1111 555555555555555555 22222
lowQualScore : 2 99 111111 2222 1 1 66 4 99 000000000000000000000000000000000000000000000000000000 5 22 8888888 11 33333333 66 2 0 33 66 1 1 1 66 888 777 11111 4 0 3 222222222 666666 77 99 111 3 1 77 1 0 1 1 0 44 0 333333 5 0 5 1 666666 0 2 2222 5 5 44 00 666 6 1 0 3 0 1 0 0 1 22 6 8 33 333 8 777777777777777777 2 55555 3 0 1 3 0 7 0
lowQualScore : . .. ...... .... . . .. . .. ...................................................... . .. ....... .. ........ .. . . .. .. . . . .. ... ... ..... . . . ......... ...... .. .. ... . . .. . . . . . .. . ...... . . . . ...... . . .... . . .. .. ... . . . . . . . . . .. . . .. ... . .................. . ..... . . . . . . .
lowQualScore : 8 22 666666 1111 8 0 11 4 11 111111111111111111111111111111111111111111111111111111 7 00 6666666 44 33333333 99 5 9 99 00 4 4 4 11 111 888 11111 4 9 4 999999999 444444 99 22 777 5 0 99 0 7 4 6 3 00 7 000000 7 3 7 3 444444 6 7 1111 0 0 88 44 888 0 0 8 2 6 0 8 8 0 44 0 0 88 888 0 000000000000000000 5 00000 2 2 0 2 8 0 8
consensus : TATTTACATTTCCA--CTGCAATCGGCCTA----TAAATGAACTA----TATAGATTAAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGA-----NTTTGTTTT--GCTGGTGAG-ACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CGTAA-----GT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAAC-GTAATAGTT------TTATCTAAAATAGTTAGAAAA----TATAATGTAAAT-ATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
Reference ( family-2168 ) : TATTTACATTTCTA--CTGCAATCGGCCTA---GTAAATGAACTA----TATAGATTNAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTNCACGA-----ATTTGTTTT--GCTGATGAG-ACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CGTAA-----GT-TGTCCTAAAAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTNGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAAC-GTAATAGTT------TTATCTAAAATAGTTAGAGAA----TATAATGTAAAT-ATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCCAGTTTAATGTTGCCGAGAAGCCNTTCGGGCTTCNCGAACATTAAACTNGCCTAATG-TTTTTCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AACAAT-----ATAACTNGTTTATTTTAAATAT
gi|1 : ---GTAAATGAACTA----TATAAATTTAC--TGCATTTCATT-TCCTTATGAAAAACA-------------------C-----------------------------------------------------TTGCA--------GCTGGGCGG-----A----------GCTAAAAAGGAC--CA-GTTTCC--GTTT-GTTTCACATGACGTTTGC---CGTAA-----GT-TTTCCTACAAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGGCATTGGCTTTGCGGTTTA--AGACGTATAAATTGTTTTTTAAATATCAAAATGGC--AAA-ATAAC-GTAATAGTT------ATATCTAAAATAGCTACAGAA----TATAATGTAAAT-ATAAGG-ATTAAAAGC------------------CGGGTGATGCAAAACATAAGGCTAGTTTATTGTTGCCGAGAAGCCCTTCGAGCGTCACGAACATTAAACAGGCTTTATGTTTTTTTATCACCCGATGAAAACTCAAAATGCCGCTTTTAATCCTT-AA------------TTAAAAAAAAAT-----GTAAATAG--TATTCTGAAT
gi|10 : gtgtaatgagacTGTTTT--GATGATACG-GCGTCACGATGTCAAGT---GTTTTCCTTGTTGTTTGC---CGTAA-----AT-TACCATAAACG---------TGTGTGCA------CTCATTCAGTGTG--tggagaactgtaaactttgggtatactaaaactgaaaaagaaaagaacatgaagaaattgaaaaataaa
gi|12 : ATAGATCAAC--TGCATTTCATT-TCAAGATAAAAAAatcaatccgattgtgttaatgtatatttacatttc
gi|13 : catttctataaaatgcacacagcgtgctttgaaAAT--TAAGG-ATTAAAAGCTGAATTTTGAGTTTTCATCGGacaattatagctataaacagt
gi|13 : CCGATGAAAACTCAAAATTCAGCTTTTAATCCTT-AATTGTGTGCTCCCT-----ATCAATTGCAAATTATTGGTTGATTTTAAATgtgtgctccctatcaattgcaaattattggttgattttaaatta
gi|15 : CC--GTGA-GTTTCACGCGACATTTGCCGGCGTAA-----GT-ta
gi|16 : gagctaaaaaagaccaCGTCATTTTGAC--CTGA-GTTTCACGGGACGTTTGC---CGTAA-----GT-TGTCATAat
gi|2 : TATTTACATTCCCA--ATGCAATAAGCCTATTAGTAAATGAACTA----TATAGATTTAC--TGCATTTCATT-TCCAAATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGTTGCACGG-----ATTTGTTTT--GCTGGTGAG-ACGTCCCGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CGTAA-----GT-TGTCCTAGAAG---------TGCGCGCA------CTTATTCATTATG--TTG--ACAACGTCGTCGTT---ACATTCGTGACATTTGCTTTTCGGTTTA--TTGCGTATACTTTGCTTTTTAAATATCAAAATGGC-AAAA-ATAAC-GTAATACTT------TTATCTAAGATAGTTGGAGAA----TATAATGTAAAT-ATAAGG-ATTAAAAGCCGAATTTTTAGTTTTCATCGAGTGATGAAAAGCATTAGGCTAGTTTAATGTTGCCTAGAAGCCGTTCGGGCTTCACGAACATTAAACATGCCTAATG-TTTTGCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AACAAT-----ATAACTGATTCATTTTAAATAT
gi|3 : TATTTACATTTTTA--CTGCAATCGGCCTA------AATGAACTT----TATAGCTTAAA--TGCATTTCATA-TCCCAATGAAAAACATTTTTGCAGCTGGGCGGAGC--------------T-----------------AAAA-AGGACCAG-------TTTGCATTTCATTGGTTGCACTA-----TTTTGTTTT--G--------------ACATTACC--ATTA-GGTTAACATCATGTTTGC---GGTAA-----GTCTATGC---AAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACATTGCTGTT---ACATTCAAGGCATTAGCTTTGTGGTTTATTATACGAATAATTTGCATTTCAAACATCAAAATCGT-AAAATAAAACTGTAATAGTT------TTATCTAAAATAGTTAAAAAG----TTTCATGTAAAT-ATGAGG-GCTAAAAGCCAAATTTAGAGTTTTCATCGAGTGATGAAAAACATAAGAATAATTTAATGTTGCTGAGAAGCCCT--GG---TCTCG---AT----CTGGTCTAATG-TTTTAAATCACCCAATGGAACCTAAAAATGGGGCTTTTAATCCAT-AA------------
gi|4 : ATAGA--AAC--TGCATTTCGTT-TCTTTATGAAAATCAATTGAATTTGGGTAGTG--C--------------T-----------------TAAA-GT-ACCAG-------TTTGCATTTCATTGGCACCATGATGTTGCTTTGCTTTTAGCTTGTAGG-ACATTACATT-------------TCATGGGATGCTTAC---TGTAGCCTAGGT-AGCCATAAAGA---------TGTGCACAACTGTGCTTATTCAACAGGGCTTGGAACAAAGTCACTATTCAAACA---ATGACATTAAATTGGTAGCTAG--ATAC-------------TTTAA-TAT-AAAA-----AAAA-ACATC-ATCGTAGTTATTCTTTCATCTTAAATAATTTGAAAA----TATATTGTAAATTATA-------------CAAATT--GAGTTTTCATTGAAAGATGAAAAACATTCT-CTAGTCTA----------------GTTCGGACTTCA--AACATTAATCTAGCCT---G-TTTTTCATCACTGGAT-CAAACTCAAAATTATGCTACCATTCCTGAAA------------T-----AAACAC-----A-AACTTATTTACT---AATATgtg
gi|5 : tgttaatgatgtgcaatgttgaaacaATTCACATTCCAA--CTGCAATCAGCCTA------AATGAACTA----TATAGATTTAC--TGCATTTCATT-TTCCAATGAAAAACA-------------------C--------------TTGCAGCTGGGCGGAGCTAAAA-AGGACCAG-------TTTGCATTTCATTGGTTGTATGA-----ATTTGTTTT--GCTGATGAG-ACGTCAGGTTGCC--GTTA-GTTTCATATGGCGTTTGT---CATAT-----GT-TGTCCTACAAA---------TGCGTGCA------CTTATTTAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCAGTTTA--ATTTGTACAATTTGCTTTTTAGTTATCAAAATTCCAAAAA-ATTAC-GTCATAGTT------TTATCTGAAATAGTAAGAAAA----TATAATGTAAAT-ATCAGG-ATTAAAAGCCGAATGTTGAGTTTTCATCGGTTGATGAAAAACGTTAGGGCAGTTTAGTGTTGTCGAGAAGCCCTTTGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTa
gi|6 : ATTTACATTTCCA--TGGCAACAGGTCTA------AATAAGTTACAATTATAGATTATA--TGCATTTCATT-TTCTGATGAAAAACA-------------------TGCAGTTGGGCGGAGC-----------------ATAATATGATCTG-------TTTACATTTCATTTACTTTTCA--------TTGTTTT--GATGGTGCG-TCGTCACATTGTC--ATTAAGTTTAATGTGAAGTTTGC---TGTAA-----GT-AG-CCTAAAAAAATAAAAAATATGTGCA------TTGATTCGATGTG--TTG--ACAATGTCGCTGTT---CCAATGATGACATTGGCTTTGCGGGTTA--ATTCTTATAATCTGCTTT----ATA-------------------------ATAGTT------TTGTCCAAAACGGTTAGATAATTATTGTCATGTAAAT-ATAAAATATTAAAAGCACAATTTTGAGTGTTCATTGGGTAATGAAATACATTAGCCTAGTTTAATGTTGC
gi|7 : CATTTCTAAGTTGCAATCGGTCT-----TAA-TGAACTA----TAC----TAAC--TGCATTTCATT-TCGAGATAAAAAA
gi|8 : ttTTTA--ATGAGT-TGTTCTATCTTTTAAG-ATCAAAATAG--GAAA-ATAAC-GCAATAGTT------TCATCTTAGGCAATTAGAAGA----TATAACATTATA-ATAAGT-ATTAAAAGCCCACTTTTGAGATTTCATCGGGTGAaatgtttgcaactgggctatataagtcagtttagcatacttatttgtcgaaggtgtatattttttattcaaacgtattatatttacaaacaacatatatatttatgtcactaaatatagccacgtttggcgcct
gi|9 : ctgctgtcaattttgcaaaaatatcagcgatataggtaaaacatcCCA--CAGTAATCAGTCTA------AATGAAGTA----TATAGAGCAACACTGCATATTATTAGCCAAAT--AAAACA-------------------T--------------TT----------------GCAC-ATGCGCAGAACTAAATATGCATTTTATTGGCTCTACGA-----TTTTGTTTT--GC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACATTCACTTGGTACAATTTACATAAATTTCTTTACAGTTGAGTTATATGCATTTTTTTTTTTAATGAAATAGATGTAGATGAGCGAATCAAACATG
Unaligned ( gi|14 ): GGATCCAATCAAAAAGTATGATACATGTAATTAGAGTTTATATCTAATTTTTCAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 333333 1111 5555555555555555555555555555555555555555555555555555 1111111 111 222222222222 11111 222222222 111111 111 222222 111111 1111 555555555555555555 22222
lowQualScore : 99 555555 2222 1 66 4 99 8888888888888888888888888888888888888888888888888888 5 4 8888888 11 000 2 000000000000 66 1 44 66 888 777 11111 4 0 3 222222222 1 666666 77 99 111 3 0 77 1 0 1 1 0 1 0 0 333333 5 0 5 1 666666 0 2222 5 5 44 0 1 0 0 0 0 0 1 1 11 8 11 333 8 777777777777777777 1 55555 3 0 0 3 0 7 0
lowQualScore : .. ...... .... . .. . .. .................................................... . . ....... .. ... . ............ .. . .. .. ... ... ..... . . . ......... . ...... .. .. ... . . .. . . . . . . . . ...... . . . . ...... . .... . . .. . . . . . . . . . .. . .. ... . .................. . ..... . . . . . . .
lowQualScore : 22 999999 1111 8 11 4 11 3333333333333333333333333333333333333333333333333333 7 3 6666666 11 111 5 444444444444 00 4 88 11 111 888 11111 4 9 4 999999999 4 444444 99 22 777 5 3 99 0 7 4 6 3 4 1 7 000000 7 3 7 3 444444 6 1111 0 0 88 1 0 3 8 8 8 8 0 4 88 0 22 888 0 000000000000000000 0 00000 2 2 2 2 8 0 8
consensus : TATTTACATTTCCA--CTGCAATCGGCCTAT----AAATGAACTA----TATAGATTAAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGANTTTGTTTTGCT----G---GTGAG-ACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAAC-GTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
Reference ( family-2168 ) : TATTTACATTTCCA--CTGCAATCGGCCTAT----AAATGAACTA----TATAGATTAAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGANTTTGTTTTGCT----G---GTGAG-ACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAAC-GTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
gi|1 : T----AAATGAACTA----TATAAATTTAC--TGCATTTCATT-TCCTTATG-----------------------------------------------------------AAAA-AC-AC-----------TTGCA--------GCTGGGCGGA--------GCT----A---AAAAGGAC--CA-GTTTCC--GTTT-GTTTCACATGACGTTTGC---CG-----TAAGT-TTTCCTACAAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGGCATTGGCTTTGCGGTTTA--AGACGTATAAATTGTTTTTTAAATATCAAAATGGC--AAA-ATAAC-GTAATAG------TTATATCTAAAATAGCTACAGAA----TATAATGTAAA-TATAAGG-ATTAAAAGC------------------CGGGTGATGCAAAACATAAGGCTAGTTTATTGTTGCCGAGAAGCCCTTCGAGCGTCACGAACATTAAACAGGCTTTATGTTTTTTTATCACCCGATGAAAACTCAAAATGCCGCTTTTAATCCTT-AA------------TTAAAAAAAAAT-----GTAAATAG--TATTCTGAAT
gi|10 : gtgtaatgagacgTGTTTTGAT----G---ATACG-GCGTCACGATGTCAAGT---GTTTTCCTTGTTGTTTGC---CG-----TAAAT-TACCATAAACG---------TGTGTGCA------CTCATTCAGTGTG--tggagaactgtaaactttgggtatactaaaactgaaaaagaaaagaacatgaagaaattgaaaaataaa
gi|12 : ATAGATCAAC--TGCATTTCATT-TCAAGATAAAAAAatcaatccgattgtgttaatgtatatttacatttc
gi|13 : catttctataaaatgcacacagcgtgctttgaaAA-T-TAAGG-ATTAAAAGCTGAATTTTGAGTTTTCATCGGacaattatagctataaacagt
gi|13 : CCGATGAAAACTCAAAATTCAGCTTTTAATCCTT-AATTGTGTGCTCCCT-----ATCAATTGCAAATTATTGGTTGATTTTAAATgtgtgctccctatcaattgcaaattattggttgattttaaatta
gi|15 : CC--GTGA-GTTTCACGCGACATTTGCCGGCG-----TAAGT-ta
gi|16 : gagctaaaaaagaccaCGTCATTTTGAC--CTGA-GTTTCACGGGACGTTTGC---CG-----TAAGT-TGTCATAat
gi|2 : TATTTACATTCCCA--ATGCAATAAGCCTATTAGTAAATGAACTA----TATAGATTTAC--TGCATTTCATT-TCCAAATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGTTGCACGGATTTGTTTTGCT----G---GTGAG-ACGTCCCGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAGAAG---------TGCGCGCA------CTTATTCATTATG--TTG--ACAACGTCGTCGTT---ACATTCGTGACATTTGCTTTTCGGTTTA--TTGCGTATACTTTGCTTTTTAAATATCAAAATGGC-AAAA-ATAAC-GTAATAC------TTTTATCTAAGATAGTTGGAGAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTTAGTTTTCATCGAGTGATGAAAAGCATTAGGCTAGTTTAATGTTGCCTAGAAGCCGTTCGGGCTTCACGAACATTAAACATGCCTAATG-TTTTGCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AACAAT-----ATAACTGATTCATTTTAAATAT
gi|3 : TATTTACATTTTTA--CTGCAATCGGCCTA------AATGAACTT----TATAGCTTAAA--TGCATTTCATA-TCCCAATGAAAAACATTTTTGCAGCTGGGCGGAGC--------------T-----------------AAAA-AGGACCAG-------TTTGCATTTCATTGGTTGCACTATTTTGTTTTG---------------------ACATTACC--ATTA-GGTTAACATCATGTTTGC---GG-----TAAGTCTATGC---AAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACATTGCTGTT---ACATTCAAGGCATTAGCTTTGTGGTTTATTATACGAATAATTTGCATTTCAAACATCAAAATCGT-AAAATAAAACTGTAATAG------TTTTATCTAAAATAGTTAAAAAG----TTTCATGTAAA-TATGAGG-GCTAAAAGCCAAATTTAGAGTTTTCATCGAGTGATGAAAAACATAAGAATAATTTAATGTTGCTGAGAAGCCCT--GGTCT---CG---AT----CTGGTCTAATG-TTTTAAATCACCCAATGGAACCTAAAAATGGGGCTTTTAATCCAT-AA------------
gi|4 : ATAGA--AAC--TGCATTTCGTT-TCTTTATGAAAATCAATTGAATTTGGGTAGTG--C--------------T-----------------TAAA-GT-ACCAG-------TTTGCATTTCATTGGCACCATGATGTTGCTTTGCTTTTAGCTTGTAGG-ACATTAC-------------ATTTCATGGGATGCTTAC---TGTAGCCTAGGT-AGCCATAAAGA---------TGTGCACAACTGTGCTTATTCAACAGGGCTTGGAACAAAGTCACTATTCAAACA---ATGACATTAAATTGGTAGCTAG--ATAC------TTT--------AATAT-AAAA-----AAAA-ACATC-ATCGTAGTTATTCTTTCATCTTAAATAATTTGAAAA----TATATTGTAAATTATA-------------CAAA--TTGAGTTTTCATTGAAAGATGAAAAACATT-CTCTAGTCTAG----------------TTCGGACTTCA--AACATTAATCTAGCC---TG-TTTTTCATCACTGGAT-CAAACTCAAAATTATGCTACCATTCCTGAAA------------T-----AAACAC-----A-AACTTATTTACT---AATATgtg
gi|5 : tgttaatgatgtgcaatgttgaaacaATTCACATTCCAA--CTGCAATCAGCCTA------AATGAACTA----TATAGATTTAC--TGCATTTCATT-TTCCAATGAAAAACA-------------------C--------------TTGCAGCTGGGCGGAGCTAAAA-AGGACCAG-------TTTGCATTTCATTGGTTGTATGAATTTGTTTTGCT----G---ATGAG-ACGTCAGGTTGCC--GTTA-GTTTCATATGGCGTTTGT---CA-----TATGT-TGTCCTACAAA---------TGCGTGCA------CTTATTTAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCAGTTTA--ATTTGTACAATTTGCTTTTTAGTTATCAAAATTCCAAAAA-ATTAC-GTCATAG------TTTTATCTGAAATAGTAAGAAAA----TATAATGTAAA-TATCAGG-ATTAAAAGCCGAATGTTGAGTTTTCATCGGTTGATGAAAAACGTTAGGGCAGTTTAGTGTTGTCGAGAAGCCCTTTGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTa
gi|6 : ATTTACATTTCCA--TGGCAACAGGTCTA------AATAAGTTACAATTATAGATTATA--TGCATTTCATT-TTCTGATGAAAAACA-------------------TGCAGTTGGGCGGAGC-----------------ATAATATGATCTG-------TTTACATTTCATTTACTTTTCA---TTGTTTTGAT----G---GTGCG-TCGTCACATTGTC--ATTAAGTTTAATGTGAAGTTTGC---TG-----TAAGT-AG-CCTAAAAAAATAAAAAATATGTGCA------TTGATTCGATGTG--TTG--ACAATGTCGCTGTT---CCAATGATGACATTGGCTTTGCGGGTTA--ATTCTTATAATCTGCTTT----ATA-------------------------ATAG------TTTTGTCCAAAACGGTTAGATAATTATTGTCATGTAAA-TATAAAATATTAAAAGCACAATTTTGAGTGTTCATTGGGTAATGAAATACATTAGCCTAGTTTAATGTTGC
gi|7 : CATTTCTAAGTTGCAATCGGTCT-T----AA-TGAACTA----TAC----TAAC--TGCATTTCATT-TCGAGATAAAAAA
gi|8 : ttTTTA--ATGAGT-TGTTCTATCTTTTAAG-ATCAAAATAG--GAAA-ATAAC-GCAATAG------TTTCATCTTAGGCAATTAGAAGA----TATAACATTAT-AATAAGT-ATTAAAAGCCCACTTTTGAGATTTCATCGGGTGAaatgtttgcaactgggctatataagtcagtttagcatacttatttgtcgaaggtgtatattttttattcaaacgtattatatttacaaacaacatatatatttatgtcactaaatatagccacgtttggcgcct
gi|9 : ctgctgtcaattttgcaaaaatatcagcgatataggtaaaacatcCCA--CAGTAATCAGTCTA------AATGAAGTA----TATAGAGCAACACTGCATATTATTAGCCAAAT--AAAACA-------------------T--------------TT----------------GCAC-ATGCGCAGAACTAAATATGCATTTTATTGGCTCTACGATTTTGTTTTGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACATTCACTTGGTACAATTTACATAAATTTCTTTACAGTTGAGTTATATGCATTTTTTTTTTTAATGAAATAGATGTAGATGAGCGAATCAAACATG
Unaligned ( gi|14 ): GGATCCAATCAAAAAGTATGATACATGTAATTAGAGTTTATATCTAATTTTTCAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 333333 1111 5555555555555555555555555555555555555555555555555555 1111111 111 222222222222 11111 222222222 111111 111 222222 111111 1111 555555555555555555 22222
lowQualScore : 99 555555 2222 1 66 4 99 8888888888888888888888888888888888888888888888888888 5 4 8888888 11 000 2 000000000000 66 1 44 66 888 777 11111 4 0 3 222222222 1 666666 77 99 111 3 0 77 1 0 1 1 0 1 0 0 333333 5 0 5 1 666666 0 2222 5 5 44 0 1 0 0 0 0 0 1 1 11 8 11 333 8 777777777777777777 1 55555 3 0 0 3 0 7 0
lowQualScore : .. ...... .... . .. . .. .................................................... . . ....... .. ... . ............ .. . .. .. ... ... ..... . . . ......... . ...... .. .. ... . . .. . . . . . . . . ...... . . . . ...... . .... . . .. . . . . . . . . . .. . .. ... . .................. . ..... . . . . . . .
lowQualScore : 22 999999 1111 8 11 4 11 3333333333333333333333333333333333333333333333333333 7 3 6666666 11 111 5 444444444444 00 4 88 11 111 888 11111 4 9 4 999999999 4 444444 99 22 777 5 3 99 0 7 4 6 3 4 1 7 000000 7 3 7 3 444444 6 1111 0 0 88 1 0 3 8 8 8 8 0 4 88 0 22 888 0 000000000000000000 0 00000 2 2 2 2 8 0 8
consensus : TATTTACATTTCCA--CTGCAATCGGCCTAT----AAATGAACTA----TATAGATTAAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGANTTTGTTTTGCT----G---GTGAG-ACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAAC-GTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
Reference ( family-2168 ) : TATTTACATTTCCA--CTGCAATCGGCCTAT----AAATGAACTA----TATAGATTAAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGANTTTGTTTTGCT----G---GTGAG-ACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAAC-GTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
gi|1 : T----AAATGAACTA----TATAAATTTAC--TGCATTTCATT-TCCTTATG-----------------------------------------------------------AAAA-AC-AC-----------TTGCA--------GCTGGGCGGA--------GCT----A---AAAAGGAC--CA-GTTTCC--GTTT-GTTTCACATGACGTTTGC---CG-----TAAGT-TTTCCTACAAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGGCATTGGCTTTGCGGTTTA--AGACGTATAAATTGTTTTTTAAATATCAAAATGGC--AAA-ATAAC-GTAATAG------TTATATCTAAAATAGCTACAGAA----TATAATGTAAA-TATAAGG-ATTAAAAGC------------------CGGGTGATGCAAAACATAAGGCTAGTTTATTGTTGCCGAGAAGCCCTTCGAGCGTCACGAACATTAAACAGGCTTTATGTTTTTTTATCACCCGATGAAAACTCAAAATGCCGCTTTTAATCCTT-AA------------TTAAAAAAAAAT-----GTAAATAG--TATTCTGAAT
gi|10 : gtgtaatgagacgTGTTTTGAT----G---ATACG-GCGTCACGATGTCAAGT---GTTTTCCTTGTTGTTTGC---CG-----TAAAT-TACCATAAACG---------TGTGTGCA------CTCATTCAGTGTG--tggagaactgtaaactttgggtatactaaaactgaaaaagaaaagaacatgaagaaattgaaaaataaa
gi|12 : ATAGATCAAC--TGCATTTCATT-TCAAGATAAAAAAatcaatccgattgtgttaatgtatatttacatttc
gi|13 : catttctataaaatgcacacagcgtgctttgaaAA-T-TAAGG-ATTAAAAGCTGAATTTTGAGTTTTCATCGGacaattatagctataaacagt
gi|13 : CCGATGAAAACTCAAAATTCAGCTTTTAATCCTT-AATTGTGTGCTCCCT-----ATCAATTGCAAATTATTGGTTGATTTTAAATgtgtgctccctatcaattgcaaattattggttgattttaaatta
gi|15 : CC--GTGA-GTTTCACGCGACATTTGCCGGCG-----TAAGT-ta
gi|16 : gagctaaaaaagaccaCGTCATTTTGAC--CTGA-GTTTCACGGGACGTTTGC---CG-----TAAGT-TGTCATAat
gi|2 : TATTTACATTCCCA--ATGCAATAAGCCTATTAGTAAATGAACTA----TATAGATTTAC--TGCATTTCATT-TCCAAATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGTTGCACGGATTTGTTTTGCT----G---GTGAG-ACGTCCCGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAGAAG---------TGCGCGCA------CTTATTCATTATG--TTG--ACAACGTCGTCGTT---ACATTCGTGACATTTGCTTTTCGGTTTA--TTGCGTATACTTTGCTTTTTAAATATCAAAATGGC-AAAA-ATAAC-GTAATAC------TTTTATCTAAGATAGTTGGAGAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTTAGTTTTCATCGAGTGATGAAAAGCATTAGGCTAGTTTAATGTTGCCTAGAAGCCGTTCGGGCTTCACGAACATTAAACATGCCTAATG-TTTTGCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AACAAT-----ATAACTGATTCATTTTAAATAT
gi|3 : TATTTACATTTTTA--CTGCAATCGGCCTA------AATGAACTT----TATAGCTTAAA--TGCATTTCATA-TCCCAATGAAAAACATTTTTGCAGCTGGGCGGAGC--------------T-----------------AAAA-AGGACCAG-------TTTGCATTTCATTGGTTGCACTATTTTGTTTTG---------------------ACATTACC--ATTA-GGTTAACATCATGTTTGC---GG-----TAAGTCTATGC---AAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACATTGCTGTT---ACATTCAAGGCATTAGCTTTGTGGTTTATTATACGAATAATTTGCATTTCAAACATCAAAATCGT-AAAATAAAACTGTAATAG------TTTTATCTAAAATAGTTAAAAAG----TTTCATGTAAA-TATGAGG-GCTAAAAGCCAAATTTAGAGTTTTCATCGAGTGATGAAAAACATAAGAATAATTTAATGTTGCTGAGAAGCCCT--GGTCT---CG---AT----CTGGTCTAATG-TTTTAAATCACCCAATGGAACCTAAAAATGGGGCTTTTAATCCAT-AA------------
gi|4 : ATAGA--AAC--TGCATTTCGTT-TCTTTATGAAAATCAATTGAATTTGGGTAGTG--C--------------T-----------------TAAA-GT-ACCAG-------TTTGCATTTCATTGGCACCATGATGTTGCTTTGCTTTTAGCTTGTAGG-ACATTAC-------------ATTTCATGGGATGCTTAC---TGTAGCCTAGGT-AGCCATAAAGA---------TGTGCACAACTGTGCTTATTCAACAGGGCTTGGAACAAAGTCACTATTCAAACA---ATGACATTAAATTGGTAGCTAG--ATAC------TTT--------AATAT-AAAA-----AAAA-ACATC-ATCGTAGTTATTCTTTCATCTTAAATAATTTGAAAA----TATATTGTAAATTATA-------------CAAA--TTGAGTTTTCATTGAAAGATGAAAAACATT-CTCTAGTCTAG----------------TTCGGACTTCA--AACATTAATCTAGCC---TG-TTTTTCATCACTGGAT-CAAACTCAAAATTATGCTACCATTCCTGAAA------------T-----AAACAC-----A-AACTTATTTACT---AATATgtg
gi|5 : tgttaatgatgtgcaatgttgaaacaATTCACATTCCAA--CTGCAATCAGCCTA------AATGAACTA----TATAGATTTAC--TGCATTTCATT-TTCCAATGAAAAACA-------------------C--------------TTGCAGCTGGGCGGAGCTAAAA-AGGACCAG-------TTTGCATTTCATTGGTTGTATGAATTTGTTTTGCT----G---ATGAG-ACGTCAGGTTGCC--GTTA-GTTTCATATGGCGTTTGT---CA-----TATGT-TGTCCTACAAA---------TGCGTGCA------CTTATTTAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCAGTTTA--ATTTGTACAATTTGCTTTTTAGTTATCAAAATTCCAAAAA-ATTAC-GTCATAG------TTTTATCTGAAATAGTAAGAAAA----TATAATGTAAA-TATCAGG-ATTAAAAGCCGAATGTTGAGTTTTCATCGGTTGATGAAAAACGTTAGGGCAGTTTAGTGTTGTCGAGAAGCCCTTTGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTa
gi|6 : ATTTACATTTCCA--TGGCAACAGGTCTA------AATAAGTTACAATTATAGATTATA--TGCATTTCATT-TTCTGATGAAAAACA-------------------TGCAGTTGGGCGGAGC-----------------ATAATATGATCTG-------TTTACATTTCATTTACTTTTCA---TTGTTTTGAT----G---GTGCG-TCGTCACATTGTC--ATTAAGTTTAATGTGAAGTTTGC---TG-----TAAGT-AG-CCTAAAAAAATAAAAAATATGTGCA------TTGATTCGATGTG--TTG--ACAATGTCGCTGTT---CCAATGATGACATTGGCTTTGCGGGTTA--ATTCTTATAATCTGCTTT----ATA-------------------------ATAG------TTTTGTCCAAAACGGTTAGATAATTATTGTCATGTAAA-TATAAAATATTAAAAGCACAATTTTGAGTGTTCATTGGGTAATGAAATACATTAGCCTAGTTTAATGTTGC
gi|7 : CATTTCTAAGTTGCAATCGGTCT-T----AA-TGAACTA----TAC----TAAC--TGCATTTCATT-TCGAGATAAAAAA
gi|8 : ttTTTA--ATGAGT-TGTTCTATCTTTTAAG-ATCAAAATAG--GAAA-ATAAC-GCAATAG------TTTCATCTTAGGCAATTAGAAGA----TATAACATTAT-AATAAGT-ATTAAAAGCCCACTTTTGAGATTTCATCGGGTGAaatgtttgcaactgggctatataagtcagtttagcatacttatttgtcgaaggtgtatattttttattcaaacgtattatatttacaaacaacatatatatttatgtcactaaatatagccacgtttggcgcct
gi|9 : ctgctgtcaattttgcaaaaatatcagcgatataggtaaaacatcCCA--CAGTAATCAGTCTA------AATGAAGTA----TATAGAGCAACACTGCATATTATTAGCCAAAT--AAAACA-------------------T--------------TT----------------GCAC-ATGCGCAGAACTAAATATGCATTTTATTGGCTCTACGATTTTGTTTTGC
blockSeqs : AG TTAGTA CAAT T AC A AG TTTTTGCAGCTGGGCGGAGCT T G AACTAAA GC GAT A TTTAGCTTGTAG G G CG AA TAA CGG TAGCC C A AATAAAAAA T ACTGTG GC GA CAA T TT G A C T TTCCAA T T A TTATTC TTAT T T TG G A A TA . GC TCA A TTGTGTGCTCCCT C TGCAA T T T
blockSeqs : . TA . T . . AA ATTGAATTTGGGTAGTGCT . G . GC ATT C GATAC A G TT . GA . . . G . C . . . . T . A A A T TGGCA . . A . . . . CG A T T TA . AA TCG . T C . T T T
blockSeqs : . . . T . . CA CTTGCAGCTGGGCGGAGCT . G . CC ATG C GGTGA A G CG . GA . . . A . T . . . . T . A A A T TCGTA . . C . . . . CA T A T TA . TC GGG . T A . . T .
blockSeqs : . . . T . . TT TGCAGTTGGGCGGAGC . G . GT AAT C GATGA A A CA . TA . . . C . C . . . . A . T A A T TAGG . . C . . . . CA G . T . . TAT .
blockSeqs : . . . T . . CA TTT . G . TT ATT A GGTGC T G GG . TA . . . A . T . . . . . . T . T . A . . A . . . . CG C
blockSeqs : . . G . . TG CT . . . CT . C . . G CA . TA . . . . . T . . . G . . . . . . . . . . . AC
blockSeqs : . . . AG . . C . . . . . . . CC
blockSeqs : . . . AA . . . . .
blockSeqCons : ****** ATT A* CG TGA*** CG
originalCons : TATTTACATTTCCA--CTGCAATCGGCCTAT----AAATGAACTA----TATAGATTAAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGANTTTGTTTTGCT----G---GTGAG-ACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATNGC-AAAA-ATAAC-GTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
finalCons : TATTTACATTTCCA--CTGCAATCGGCCTA------AATGAACTA----TATAGATTAAC--TGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGATTTTGTTTTGCT----G---GTGAGA-CGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAATGA---AAA-ATAAC-GTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACATTCACTTGGTACAATTTACATAAATTTCTTTACAGTTGAGTTATATGCATTTTTTTTTTTAATGAAATAGATGTAGATGAGCGAATCAAACATG
Unaligned ( gi|14 ): GGATCCAATCAAAAAGTATGATACATGTAATTAGAGTTTATATCTAATTTTTCAAG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 111111 1111 9999999999999999999999999999999999999999999999999999 1111111 111 22222222 11111 222222222 111111 111 333333333 111 111111 1111 555555555555555555 22222
lowQualScore : 99 666666 2222 1 66 4 99 1111111111111111111111111111111111111111111111111111 5 1 8888888 6 000 4 00000000 5 1 3 66 888 777 11111 4 0 3 222222222 1 666666 77 99 111 3 0 77 1 0 1 1 0 1 33 0 888888888 000 666666 0 2222 5 5 44 0 1 0 0 0 0 0 1 1 11 8 11 333 8 777777777777777777 1 55555 3 0 0 3 0 7 0
lowQualScore : .. ...... .... . .. . .. .................................................... . . ....... . ... . ........ . . . .. ... ... ..... . . . ......... . ...... .. .. ... . . .. . . . . . . .. . ......... ... ...... . .... . . .. . . . . . . . . . .. . .. ... . .................. . ..... . . . . . . .
lowQualScore : 22 444444 1111 8 11 4 11 3333333333333333333333333333333333333333333333333333 7 3 6666666 7 000 3 00000000 5 8 4 11 111 888 11111 4 9 4 999999999 4 444444 99 22 777 5 3 99 0 7 4 6 3 4 99 7 333333333 000 444444 6 1111 0 0 88 1 0 3 8 8 8 8 0 4 88 0 22 888 0 000000000000000000 0 00000 2 2 2 2 8 0 8
consensus : TATTTACATTTCCA--CTGCAATCGGCCTA------AATGAACTA----TATAGATTA--ACTGCATTTCATT-TCCCGATGAAAAACA-TT--------G----G--C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGATTT---TGTTTTGCT----G---GTGNGACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAAT---G--A-AAAATAA---CGTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
Reference ( family-2168 ) : TATTTACATTTCCA--CTGCAATCGGCCTA------AATGAACTA----TATAGATTA--ACTGCATTTCATT-TCCCGATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGCTGCACGATTT---TGTTTTGCT----G---GTGAGACGTCACGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAAAAA---------TGCGCGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCGGTTTA--ATNCGTATAATTTGCTTTTTAAATATCAAAAT---G--A-AAAATAA---CGTAATAG------TTTTATCTAAAATAGTTAGAAAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTGAGTTTTCATCGGGTGATGAAAAACATTAGGCTAGTTTAATGTTGCCGAGAAGCCCTTCGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTNCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AANAAT-----ATAACTGGTTTATTTTAAATAT
gi|1 : TA------AATGAACTA----TATAAATTT--ACTGCATTTCATT-TCCTTATGAAAAACACTTGCAGCTGGGCGGAG--C--------------T-----------------AAAA-AGGACCAG-------TTTCCGTTT
gi|1 : gtgtaatgagacgGTTTCC--GTTT-GTTTCACATGACGTTTGC---CG-----TAAGT-TTTCCTACAAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGGCATTGGCTTTGCGGTTTA--AGACGTATAAATTGTTTTTTAAATATCAAAAT---G--GCAAAATAA---CGTAATAG------TTATATCTAAAATAGCTACAGAA----TATAATGTAAA-TATAAGG-ATTAAAAGC------------------CGGGTGATGCAAAACATAAGGCTAGTTTATTGTTGCCGAGAAGCCCTTCGAGCGTCACGAACATTAAACAGGCTTTATGTTTTTTTATCACCCGATGAAAACTCAAAATGCCGCTTTTAATCCTT-AA------------TTAAAAAAAAAT-----GTAAATAG--TATTCTGAATgtttcacatgacgtttgccgtaagttttcctacaaatgcgtgcacttattcagtatgttgacaacgtcgccgttacattcatggcattggctttgcggtttaagacgtataaattgttttttaaatatcaaaatggcaaaataacgtaatagttatatctaaaatagctacagaatataatgtaaatataaggattaaaagccgggtgatgcaaaacataaggctagtttattgttgccgagaagcccttcgagcgtcacgaacattaaacaggctttatgtttttttatcacccgatgaaaactcaaaatgccgcttttaatccttaattaaaaaaaaatgtaaatagtattctgaattggagaactgtaaactttgggtatactaaaactgaaaaagaaaagaacatgaagaaattgaaaaataaa
gi|10 : gtgtaatgagacgtaaatgaactatataaatttactgcatttcatttccttatgaaaaacacttgcagctgggcggagctaaaaaggacca---TGTTTTGAT----G---ATACGGCGTCACGATGTCAAGT---GTTTTCCTTGTTGTTTGC---CG-----TAAAT-TACCATAAACG---------TGTGTGCA------CTCATTCAGTGTG--tggagaactgtaaactttgggtatactaaaactgaaaaagaaaagaacatgaagaaattgaaaaataaa
gi|12 : ATAGATCA--ACTGCATTTCATT-TCAAGATAAAAAAatcaatccgattgtgttaatgtatatttacatttc
gi|13 : catttctataaaatgcacacagcgtgctttgaaAA-T-TAAGG-ATTAAAAGCTGAATTTTGAGTTTTCATCGGacaattatagctataaacagt
gi|13 : CCGATGAAAACTCAAAATTCAGCTTTTAATCCTT-AATTGTGTGCTCCCT-----ATCAATTGCAAATTATTGGTTGATTTTAAATgtgtgctccctatcaattgcaaattattggttgattttaaatta
gi|15 : CC--GTGA-GTTTCACGCGACATTTGCCGGCG-----TAAGT-ta
gi|16 : gagctaaaaaagaccaCGTCATTTTGAC--CTGA-GTTTCACGGGACGTTTGC---CG-----TAAGT-TGTCATAat
gi|2 : TATTTACATTCCCA--ATGCAATAAGCCTATTAGTAAATGAACTA----TATAGATTT--ACTGCATTTCATT-TCCAAATGAAAAACA-------------------C--------------T-----------------AAAA-ATGACCAG-------TTTGCATTTCATTGGTTGCACGGATT---TGTTTTGCT----G---GTGAGACGTCCCGTTGCC--GTTA-GTTTCACGTGACGTTTGC---CG-----TAAGT-TGTCCTAGAAG---------TGCGCGCA------CTTATTCATTATG--TTG--ACAACGTCGTCGTT---ACATTCGTGACATTTGCTTTTCGGTTTA--TTGCGTATACTTTGCTTTTTAAATATCAAAAT---GGCA-AAAATAA---CGTAATAC------TTTTATCTAAGATAGTTGGAGAA----TATAATGTAAA-TATAAGG-ATTAAAAGCCGAATTTTTAGTTTTCATCGAGTGATGAAAAGCATTAGGCTAGTTTAATGTTGCCTAGAAGCCGTTCGGGCTTCACGAACATTAAACATGCCTAATG-TTTTGCATCACCCGATGAAAACTCAAAATTCGGCTTTTAATCCTT-AA------------T-----AACAAT-----ATAACTGATTCATTTTAAATAT
gi|3 : TATTTACATTTTTA--CTGCAATCGGCCTA------AATGAACTT----TATAGCTTA--AATGCATTTCATA-TCCCAATGAAAAACATTTTTGCAGCTGGGCGGAGC--------------T-----------------AAAA-AGGACCAG-------TTTGCATTTCATTGGTTGCACTATTT---TGTTTTG--------------------ACATTACC--ATTA-GGTTAACATCATGTTTGC---GG-----TAAGTCTATGC---AAA---------TGCGTGCA------CTTATTCAGTATG--TTG--ACAACATTGCTGTT---ACATTCAAGGCATTAGCTTTGTGGTTTATTATACGAATAATTTGCATTTCAAACATCAAAATC--G--T-AAAATAAAACTGTAATAG------TTTTATCTAAAATAGTTAAAAAG----TTTCATGTAAA-TATGAGG-GCTAAAAGCCAAATTTAGAGTTTTCATCGAGTGATGAAAAACATAAGAATAATTTAATGTTGCTGAGAAGCCCT--GGTCT---CG---AT----CTGGTCTAATG-TTTTAAATCACCCAATGGAACCTAAAAATGGGGCTTTTAATCCAT-AA------------
gi|4 : ATAGA--A--ACTGCATTTCGTT-TCTTTATGAAAATCAATTGAATTTGGGTAGTG--C--------------T-----------------TAAA-GT-ACCAG-------TTTGCATTTCATTGGCACCATGATGT---TGCTTTGCTTTTAGCTTGTAGGACATTAC-------------ATTTCATGGGATGCTTAC---TGTAGCCTAGGT-AGCCATAAAGA---------TGTGCACAACTGTGCTTATTCAACAGGGCTTGGAACAAAGTCACTATTCAAACA---ATGACATTAAATTGGTAGCTAG--ATAC------TTT--------AATAT-AAAA-------A-AAAACAT---CATCGTAGTTATTCTTTCATCTTAAATAATTTGAAAA----TATATTGTAAATTATA-------------CAAA--TTGAGTTTTCATTGAAAGATGAAAAACATT-CTCTAGTCTAG----------------TTCGGACTTCA--AACATTAATCTAGCC---TG-TTTTTCATCACTGGAT-CAAACTCAAAATTATGCTACCATTCCTGAAA------------T-----AAACAC-----A-AACTTATTTACT---AATATgtg
gi|5 : tgttaatgatgtgcaatgttgaaacaATTCACATTCCAA--CTGCAATCAGCCTA------AATGAACTA----TATAGATTT--ACTGCATTTCATT-TTCCAATGAAAAACA-------------------C--------------TTGCAGCTGGGCGGAGCTAAAA-AGGACCAG-------TTTGCATTTCATTGGTTGTATGAATT---TGTTTTGCT----G---ATGAGACGTCAGGTTGCC--GTTA-GTTTCATATGGCGTTTGT---CA-----TATGT-TGTCCTACAAA---------TGCGTGCA------CTTATTTAGTATG--TTG--ACAACGTCGCCGTT---ACATTCATGACATTAGCTTTGCAGTTTA--ATTTGTACAATTTGCTTTTTAGTTATCAAAATTCCA--A-AAAATTA---CGTCATAG------TTTTATCTGAAATAGTAAGAAAA----TATAATGTAAA-TATCAGG-ATTAAAAGCCGAATGTTGAGTTTTCATCGGTTGATGAAAAACGTTAGGGCAGTTTAGTGTTGTCGAGAAGCCCTTTGGGCTTCACGAACATTAAACTGGCCTAATG-TTTTa
gi|6 : ATTTACATTTCCA--TGGCAACAGGTCTA------AATAAGTTACAATTATAGATTA--TATGCATTTCATT-TTCTGATGAAAAACA-------------------TGCAGTTGGGCGGAGC-----------------ATAATATGATCTG-------TTTACATTTCATTTACT------TTTCATTGTTTTGAT----G---GTGCGTCGTCACATTGTC--ATTAAGTTTAATGTGAAGTTTGC---TG-----TAAGT-AG-CCTAAAAAAATAAAAAATATGTGCA------TTGATTCGATGTG--TTG--ACAATGTCGCTGTT---CCAATGATGACATTGGCTTTGCGGGTTA--ATTCTTATAATCTGCTTT---------------------------------ATAATAG------TTTTGTCCAAAACGGTTAGATAATTATTGTCATGTAAA-TATAAAATATTAAAAGCACAATTTTGAGTGTTCATTGGGTAATGAAATACATTAGCCTAGTTTAATGTTGC
gi|7 : CATTTCTAAGTTGCAATCGGTCTT------AATGAACTA----TAC----TA--ACTGCATTTCATT-TCGAGATAAAAAA
gi|8 : ttTTTA--ATGAGT-TGTTCTATCTTTTAAG-ATCAAAATA--G--G-AAAATAA---CGCAATAG------TTTCATCTTAGGCAATTAGAAGA----TATAACATTAT-AATAAGT-ATTAAAAGCCCACTTTTGAGATTTCATCGGGTGAaatgtttgcaactgggctatataagtcagtttagcatacttatttgtcgaaggtgtatattttttattcaaacgtattatatttacaaacaacatatatatttatgtcactaaatatagccacgtttggcgcct
gi|9 : ctgctgtcaattttgcaaaaatatcagcgatataggtaaaacatcCCA--CAGTAATCAGTCTA------AATGAAGTA----TATAGAGCAACACTGCATATTATTAGCCAAAT--AAAACAT------------------T--------------T-----------------GCAC-ATGCGCAGAACTAAATATGCATTTTATTGGCTCTACGATTT---TGTTTTGC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TACATTCACTTGGTACAATTTACATAAATTTCTTTACAGTTGAGTTATATGCATTTTTTTTTTTAATGAAATAGATGTAGATGAGCGAATCAAACATG
Unaligned ( gi|14 ): GGATCCAATCAAAAAGTATGATACATGTAATTAGAGTTTATATCTAATTTTTCAAG