lowQualScore : 22222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 333333333 222222 2222 4444444444444444444 1111 22222 1 4444444 111 88888888888888888888888888888888888888888888888888 1 2 1111 11 111111 2222222 11111 1 111111 4444444 1 44444444444444444444444444444444444444444444444444444444444 11 111 3333333333333 55555555555555555555555 1 11 11111
lowQualScore : 0 8 22 666666666 5 0 444444 8 6666 0 1111111111111111111 1 4444 99999 7 8888 1 4444444 444 8 22222222222222222222222222222222222222222222222222 4 66 1 5 4444 22 4 444444 9999 5 3333333 4 88888 5 2 555555 0 6 7 1 0000000 6 7 2 33333333333333333333333333333333333333333333333333333333333 11 444 5555555555555 1 0 6 99 44444444444444444444444 5 7 0 5 11 22222 7
lowQualScore : . . .. ......... . . ...... . .... . ................... . .... ..... . .... . ....... ... . .................................................. . .. . . .... .. . ...... .... . ....... . ..... . . ...... . . . . ....... . . . ........................................................... .. ... ............. . . . .. ....................... . . . . .. ..... .
lowQualScore : 7 9 66 777777777 7 4 333333 2 4444 8 3333333333333333333 0 2222 33333 3 0000 7 2222222 000 2 11111111111111111111111111111111111111111111111111 0 99 2 1 5555 22 4 999999 4444 1 0000000 8 77777 0 5 999999 7 3 3 7 6666666 3 5 5 00000000000000000000000000000000000000000000000000000000000 00 000 0000000000000 0 7 7 22 77777777777777777777777 1 1 1 7 77 99999 8
consensus : NCTAGGACTACTACGTTTCAGCGGNGGATGATTCATTAGGA-TTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTT----CTTTGAAA----CTTAATGAGTTTCTGAAA-AA-AATATTGAAATAT---TGAAA---TTTTAT-----TAA--TGTT-CGT----CAC-TA---N-AAAGTNGA---ATAACCTANACTTA--TTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AACAAA---ANAAGTATAAAAG-GA-TACAGATT-NTTTGAGATGCCGAACCTGATGTTATGC------CATTCATTAGGATTATTGTCGATTGGAAT------AAA-ATGCAA-CA----------------A--------C------------A-TATT--ATTG---AATAA---CGTGAT-TTGTATATTTTA-T--TGGTTA-----------------CATGCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
Reference ( gi|1 ) : TCTAGGACTACTACGTTTCAACGATGGATAATTCAGTGGGA-TTAATGTTAC------AGATTCTTTGCGTAATTTTAAATCA-CATTGCAACAGATT----CTTTGAAA----CTTGGTACGTTTCTGAAA-AA-AATATTAAACCAA---TGAAA---TTTGAT-----TA---TGCT-CGA----CAC-TA---A-AAAATTGT---ATATTCTATATTTA--TTTGTGTTACTGTATCACC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AATAAA---ATAAGTATATTAG-GA-TACATATT-ATCTAAGATGCCGAATCTGATGTTATGCG----ACATTCATTAGGATTATTGACGACTGGAAT------AAA-GTG----------------------A--------C--------------TATT--ATTG---AAAGA---TGTGAT-TTGTATATTTCA-T--TGGTTA-----------------AATGAAGTCACACTGGTAAAAAGAAT-T-GCCCTTCACAGCACAG----TGTCTCCTTT
gi|2 : CTATGACTTTTATGCTCCTGCGGTGGATAA-------GGA-TTATTTTTTCTT----TTTTTTTTTGCGTAAGCTAAGATTA-CCTTGCAACAGAGT----CTTCGACA----CATAATAAGCTTCTG-AA-AT-AATATTGAA
gi|7 : TAAGACTACTACATCTCAGCGGCGGGT---TCATTAGGA-TTAATATTACTGTAACATATTGTTTACGTAAATTGATATCAACAT-GCTATAGGTT----CTTTAAAA----CTTAATGCGTTTCTGACA-AA-AAAATTGAAATAT---TGAAA---TGTAAT-----TAAC-TGTTATGATTACCGC-TA---T-AGTGTAGA---ATAACTTACACTTT--TTTTTGTTATTATATCAGC--TTGGTAT--AAATTTAGAA-T------------AATAAA---AAGAGTATAAAAG-G--TACAAATT-GTTTatcttgctactttaccgtattcgtatgcacttagacttatcaaaacaaaaacgtatacaaagatacagagtcgttaaaatgacaaacttgatgttatgcatgcataagagttattgttgaatataaatatgcaatcacagtttaattgagtaaagcggttttgtatattttatttagtttcacgctgtcacactggtagacagaattaaacttttatagcacagtacatatctccttttaaacgtttttgataagtttgtctattcaaaatttttg
gi|12 : ctgTAGGACTACTATGTTAAATCGGAGGACGACTGATTAGGA-TTTATGTTAC------AGATTCTTTGCATAAATTGAAGTCAGCA-TGCAAAAGGTT----CTTTGAAA----CTAAATGAGTTTCTGAAA-AA-AA-ATTGAAATAT---TGAAA---TTTTAT-----T
gi|10 : tgTAGCACTACAACGTTT-------GTATAA-------GGA-TTAATATTAC------AGATT------GTGAT---GAA-CA-CAC---------------------AA----CTTGATGAGTTTCTGAAA-CT-TA-ATTAAAATAT---CGAAA---TTTTATAACTCTAA--TGTT-CGT----CAC-TACATA-AAA---GA---ATGATCTAGACTTA--CTTCTGTAACTATATCAGC--TTGGTATTCGCACTGAGAA-T-AATC-AA----AACAAA---AC-AGTACAATAttattttttaaaactgtaatgat
gi|15 : atacactgTAAGACCAATACGTTTCAGCGTTGGATGATTCACTATGA-TTAACATTAT------AGATT
gi|16 : TAGAACCACTACTTTTCAGCGGGGGATGATTCA-TAAGAGTCAATGTTAC------AGATacatgttctttg
gi|6 : gcacgGGACTACTACGTTTCAGCTGTGGCTGATTCATAAGGA-ATAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CCTTTCAG-----------TTTGAAATCATCTT--TGAGTTTCGG--A-AA-AATCTGAAA-TAATTTTGCAATTGTTTTATC----TATACTGTT-CGT----AAC-TA---T-ATAGTAGA---ATAACATA-ATCTT--TTT---TTTCTATATCTGT--GTATTAT--GCACCTAGGA-T-AA-CTAA----AACACAT--GTAAA-AAATT----A-TACAAATG-TTTTGAGAT-TCAAACCTGATGTTTTGCA----A
gi|3 : ctgttCAGCAGATTTTTCCTTTTAAA----CCT--TTTTTCCCTAAAATAATAGTATTAAAAAAC---TGAAT---TTTGAT-----TA---TTCT-TAT----CAC-TA---C-AAAATTt
gi|2 : gaattatttctgctactatatcagcatttggaatatacttggaattagcaacacaaaacaagataaaaagaatacagattattcggattccttgagatgcggaacacattcattaggattactgcctattggaatataatgaaaatattgccccgagcatcacaatattatagaataacattgtgttatatgttttattggttacatacggccacactggtagacaaatgtacccttcaT-CGA----CACATA---ATAAGCTTCTGAAATA----ATATTGAAATCT-TGCTACTTTACCGTA--TTCGTAT--GCACTTAGACTT-AT-C-AA----AACAAA---A-ACGTATACAAA-GA-TACAGAGT-CGTTAAAATGACAAACTTGATGTTATG-------CATGCATAAGAGTTATTGTTGAAT---AT------AAATATGCAATC-----------------A--------C--------------AGTTTAATTGAGTAAAGC---GGT--T-TTGTATATTTTATT--TAGTTT-----------------CACGCTGTCACACTGGTAGACAGAAT-TAAACTTTTATAGCACAGTACATATCTCCTTTaatttataaagatatatt
gi|5 : ctatgacttttatgctcctgcggtggataaggattattttttctttttttttttgcgtaagctaagattaccttgcaacagagtctCTAGATTTA--TTTTTGTTACTAAATCAGC--TTGGTAC--ACACATAGAA-T-AATC-AA----AACAAA---AT---TGTATTAAAGA-TACAGATTTATC-AAGATGCTGAACCTGATGTT--GCG-----CATTCATTAGGATTATTGTCAATTGGAATATGATGAAA-ATATTTCCAC---------------A--------CGTATGCATCATGA-TATT--ATTG---AATAA---CGTGAT-TT---TGTTTCA-TCATCATTATCAGCAGCAGCAGCAGCAGCG--GTCACACTGATAGAAA-AAT-T-ACCTTTCACAGTACAG----Ttaaacgtttttgataagtttgtctattcaaaatttttg
gi|13 : tattgaaattttgaaattatattaactgtaatgttcgtcatttattataaagatgattaaccttagtgCTAAACTTG--TTTTTTTTACTATATCTGC--GTGGTAT--GCACTTACAA-T-AATC-AAAAAGAAAAAA---AAAAGAATAAAAG-GA-AACTTATTCATCa
gi|3 : gttcgtaactttacagtagaataaaTTA--TTTCTGCTACTATATCAGCATTTGGAAT--ATACTTGGAA-TTAG-C-AA----CACAAA---ACAAG-ATAAAAA-GAATACAGATT-AT-TCGGATTCC----TTGA-G--ATGCGGAACACATTCATTAGGATTACTGCCTATTGGAAT------ATA-ATG----------------------AAAATATTGCCCCGAGCATCACAATATT--ATAG---AATAACATTGTG---TTATATGTTTTA-T--TGGTTA-----------------CATACGGCCACACTGGTAGACA-AATGT-ACCCTTCACAGCAGA-----TTTTTCCTTTaaccgctgaaatgtaaaagtccttgtgttatttgtattca
gi|4 : gaaTA--TTTTTGTTACAGTATCAGC--TTGGTATATGCACTGAGAA-T-GA-T-AA----AAACAA---ACC-GTATAAAAG-GA-TTTAGATT-CTTTGAGATGCCAAACCTGATGTTATGC-------ATTCATTACAATTATTGTCAATTGGAAT------ACC-ATGC---------------------A--------A--------------TATT--ATCG---AGTAT---CATGATATTGTATACTTTA-T--TGGTTA-----------------CATGCAGTCACAATGGTAAAGAGAAT-T-ACCCTTCACAGCACAC----TATCTCTTTtaaaccttttttccctaaaataatagtattaaaaaactgaattttgattattcttatcactacaaaattaatttataaagatatatt
gi|9 : tttgtttgtcactatgtagtagaataactaggcC--TTGGCAT--ACACTTA-AA-T-AA-T-AA----TCTAAACCAAAAAGTGTAGAAG-GA-TACAGATT-CTTTGAGATGCCAAACATGATGTTAT--------CATTTATTAGGATTTTTGCCGGTTCGAAT------GAA-ATGAAAATATTGCCCAACGCCGCACA--------C--------------TATT--ATTG---AATAA---CGTGACATTGTATATTTCA-T--TGGTGA-----------------TATGCGATCAGAATGGCAGACAATAT-T-ACTCTTTACAGCACAG----caaacaattttgataattttctgttaatacaaatgttgatcttcatcaataaacattcaattgtaataata
gi|17 : AGATGGTGAGCCTGATGTTATGT-------ATTCATTAGGATTCCTGTCGATTGGa
gi|8 : ttcT-TTGTATATTTTA-T--TGATAA-----------------CATGCGGTCACGCTGATACAAACAA--T-ACCATTCACAGCACAG----TATCTCCTTTcaa
gi|11 : -----------------AATGTGGTCACACTGGTAGATAGAAT-T-ACCCTTCACAGCTCAG----TATCTCCTTTtaaacgtttttaataattttatgtacttgaaatgtttgatggaaaaggggtcaccagaatagattattcttttcacaacaaatttgtatttcctaatgatatatttaatatcattagaaattgacatacaccttcaaaatagcattgacgtgcgttcattaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TATTTCCAAACCATCAGTTAAAAAAGAGCGGCTTTGTGTTTATTCATCAGGATCATCATCAGCAGCAGCAGCAGCAGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111111 11111111111111 1111 111 111 44444444444444 11111 1111 1111111 11 1 1111 111 222222222 2222 44444444444444444444444444444444444444444444444444444444444444 222 111 11111111 1111
lowQualScore : 1 1 3 3 444444 5 99 6 1 44444444444444 4444 4 7 8 000 000 44444444444444 22222 888 0000 1 7 1 3 8888888 1 55 11 4 4 2 4 7777 4 777 4 0 1 999999999 66 0 3333 0 77777777777777777777777777777777777777777777777777777777777777 6 111 000 5 5 5 1 88888888 1 7 5 5 0000 0
lowQualScore : . . . . ...... . .. . . .............. .... . . . ... ... .............. ..... ... .... . . . . ....... . .. .. . . . . .... . ... . . . ......... .. . .... . .............................................................. . ... ... . . . . ........ . . . . .... .
lowQualScore : 0 7 6 8 444444 2 22 0 7 00000000000000 2222 2 3 7 000 000 44444444444444 55555 888 6666 0 7 0 0 6666666 0 55 00 0 0 0 0 0000 0 000 0 1 0 000000000 11 1 2222 7 22222222222222222222222222222222222222222222222222222222222222 7 777 000 7 7 7 9 11111111 0 6 0 0 6666 1
consensus : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTT--GCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATTCTT---------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATA-----AA---------------ATG-----------CAA-------------CG----ACA-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
Reference ( family-2136 ) : NCTAGGACTACTACGTTTCAGCGGNGGATGATTCATTAGGATTAATGTTAC------AGATTCTTT--GCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ANAAAGTNGAATAACCT-------ANACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAANAAG-TATAAAAGGATACAGATTNTT---------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATA-----AA---------------ATG-----------CAA-------------CA----ACA-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
gi|1 : CTAGGACTACTACGTTTCAACGATGGATAATTCAGTGGGATTAATGTTAC------AGATTCTTT--GCGTAATTTTAAATCA-CATTGCAACAGATTCTTTGAAA----CTTGGTACGTTTCTGAAAAAAATATTAAACCA---ATGAAA---TTTGAT-----T-A------TGC-----TCGA---CACT----AAAAAATTGTATATTCT-------ATATTTATTTGTGTTACTGTATCACC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-TAAAATAAG-TATATTAGGATACATATTATC---------TAAGATGCCGAA--TCTGATGTTATGCGACATTCATTAGGATTATTGACGACTGGAATA-----AA---------------GTG-------------A-------------C---------TATT-ATTGAAAGATGTGA-T-TTGT---AT-ATT-TCA-TTGGTTAAAT--------GAAGTCACACTGGTAAAAAGAAT-T-GCCCTTCACAGCACAG----TGTCTCCTTT
gi|10 : tATAAGGATTAATATTAC------AGATT--------GTGA--TGAA--CA-CAC-----------------AA----CTTGATGAGTTTCTGAAACTTA-ATTAAAATA---TCGAAA---TTTTATAACTCTAA------TGT-----TCGT---CACT----ACATAAAAGAATGATCT-------AGACTTACTTCTGTAACTATATCAGC--TTGGTATTCGCACTGAGAA-T-AATC-AA----AA-CAAAAC-AG-TACAA
gi|11 : atacactgtagcactacaacgtttgtAT--------GTGGTCACACTGGTAGATAGAAT-T-ACCCTTCACAGCTCAG----TATCTCCTTTta
gi|12 : caTAGGACTACTATGTTAAATCGGAGGACGACTGATTAGGATTTATGTTAC------AGATTCTTT--GCATAAATTGAAGTCAGCA-TGCAAAAGGTTCTTTGAAA----CTAAATGAGTTTCTGAAAAAAA-ATTGAAATA---TTGAAA---TTTTAT-----Tcagacgtttttgataaattgactttgaaggacactgggcttcagaacagataattcttttcagttcaaactttatctcataaagatatatttgatatcattgtatcatcgatacaccataaccttctaaattgcattactatccattcattaa
gi|13 : tgGT-----TCGT---AACT----TTACAGTAGAATAAACT-------AAACTTGTTTTTTTTACTATATCTGC--GTGGTAT--GCACTTACAA-T-AATC-AAAAAGAA-AAAAAAAAG-AATAAAAGGAAACTTATTCATCAACCGC--TGAAATGTAAAAGTCCTTGTGTTATttattttttaaaactgtaatgat
gi|15 : TAAGACCAATACGTTTCAGCGTTGGATGATTCACTATGATTAACATTAT------AGATTttgtattca
gi|16 : TAGAACCACTACTTTTCAGCGGGGGATGATTCATAAGAGTCAATGTTAC------AGATacatgttctttg
gi|17 : gcacgT---------TCAGATGGTGAG--CCTGATGTTATGT---ATTCATTAGGATTCCTGTCGATTGG
gi|2 : CTATGACTTTTATGCTCCTGCGGTGGATAA-------GGATTATTTTTTC------TTTTTTTTTTTGCGTAAGCTAAGATTA-CCTTGCAACAGAGTCTTCGACA----CATAATAAGCTTCTG-AAATAATATTGAAATC---TTGCTA---CTTTAC-----C-G------TAT-----TCGTATGCACT----caa
gi|2 : TCTTGCTACTTTACCGTA--TTCGTAT--GCACTTAGACTT-AT-C-AA----AA-CAAAA-ACG-TATACAAAGATACAGAGTCGT---------TAAAATGACAAA--CTTGATGTTATG---CATGCATAAGAGTTATTGTTGAAT---ATA-----AAT--------------ATG-----------CAA-------------TC----ACA-GTTTAATTGAGTAAAGCGGTT-TTGT---AT-ATT-TTATTTAGTTTCAC--------GCTGTCACACTGGTAGACAGAAT-TAAACTTTTATAGCACAGTACATATCTCCTTTtagacttatcaaaacaaaaacgtatacaaagatacagagtcgttaaaatgacaaacttgatgttatgcatgcataagagttattgttgaatataaatatgcaatcacagtttaattgagtaaagcggttttgtatattttatttagtttcacgctgtcacactggtagacagaattaaacttttatagcacagtacatatctccttttaaacgtttttgataagtttgtctattcaaaatttttg
gi|3 : ctatgacttttatgctcctgcggtggataaggattattttttctttttttttttgcgtaagctaagattaccttgcaacagagtcttcgacacataataagcttctgaaataatattgaaaTTATTTCTGCTACTATATCAGCATTTGGAAT--ATACTTGGAA-TTAG-C-AA----CA-CAAAACAAGATA-AAAAGAATACAGATTATTCGGATTCCTTGAGATGCGGAA--C--------A-----CATTCATTAGGATTACTGCCTATTGGAATA-----TA---------------ATG-----------AAAATATTGCCCCGAGCATC--ACAATATT-ATAGAATAACATTG-TGTTAT---AT-GTT-TTA-TTGGTTACAT--------ACGGCCACACTGGTAGACA-AATGT-ACCCTTCACAGCAGAT----T-TTTCCTTTtaaacgtttttgataagtttgtctattcaaaatttttg
gi|4 : gaa------TGT-----TTGT---CACT----ATGTAGTAGAATAAC-T-------AGGCT-ATTTTTGTTACAGTATCAGC--TTGGTATATGCACTGAGAA-T-GA-T-AA----AAACAAACC--G-TATAAAAGGATTTAGATTCTT---------TGAGATGCCAAA--CCTGATGTTATGC---ATTCATTACAATTATTGTCAATTGGAATA-----CC---------------ATG-----------CAA-----------------------TATT-ATCGAGTATCATGA-TATTGT---AT-ACT-TTA-TTGGTTACAT--------GCAGTCACAATGGTAAAGAGAAT-T-ACCCTTCACAGCACAC----TATCTCTTTtaaaccttttttccctaaaataatagtattaaaaaactgaattttgattattcttatcactacaaaattaatttataaagatatatt
gi|5 : ttTATTGAAATT---TTGAAA---TTATAT-----TAACTGTAATGT-----TCGT---CATTTATTATAAAGATGATTAACCTTAGTGCTAGATTTATTTTTGTTACTAAATCAGC--TTGGTAC--ACACATAGAA-T-AATC-AA----AA-CAAAAT-TG-TATTAAA-GATACAGATTTAT---------CAAGATGCTGAA--CCTGATGTTGCG---CATTCATTAGGATTATTGTCAATTGGAATATGATGAAAATATTTCCACACGTATG-----------CAT-------------CA----TGA-TATT-ATTGAATAACGTGATT-TTGTTTCATCATCATTA-TCAGCAGCAGCAGCAGCAGCGGTCACACTGATAGAAA-AAT-T-ACCTTTCACAGTACAG----TAcaaacaattttgataattttctgttaatacaaatgttgatcttcatcaataaacattcaattgtaataata
gi|6 : GGACTACTACGTTTCAGCTGTGGCTGATTCATAAGGAATAATGTTAC------AGATTCTTT--GCGTAAATTGAAATCA-CCTTTCAG-------TTTGAAATCATCTT--TGAGTTTCGG--AAAAAT-CTGAAATAATTTTGCAATTGTTTTATCTA--TAC------TGT-----TCGT---AACT----ATATAGTAGAATAACAT-------AATCTTTTTTTT----CTATATCTGT--GTATTAT--GCACCTAGGA-T-AA-CTAA----AA-C---ACATG-TAAAAAATTATACAAATGTTT---------TGAGAT-TCAAA--CCTGATGTTTTGC--AAT
gi|7 : ctgttTAAGACTACTACATCTCAGCGGCGGGT---TCATTAGGATTAATATTACTGTAACATATTGTTT--ACGTAAATTGATATCAACAT-GCTATAGGTTCTTTAAAA----CTTAATGCGTTTCTGACAAAAAAATTGAAATA---TTGAAA---TGTAAT-----TAAC-----TGTTATGATTAC---CGCT----ATAGTGTAGAATAACTT-------ACACTTTTTTTTGTTATTATATCAGC--TTGGTAT--AAATTTAGAA-T------------AA-TAAAAAGAG-TATAAAAGG-TACAAATTGTT---------T
gi|8 : ctg-T-TTGT---AT-ATT-TTA-TTGATAACAT--------GCGGTCACGCTGATACAAACAA--T-ACCATTCACAGCACAG----TATCTCCTTT
gi|9 : C--TTGGCAT--ACACTTA-AA-T-AA-T-AATCTAAA-CCAAA-AAG-TGTAGAAGGATACAGATTCTT---------TGAGATGCCAAA--CATGATGTTAT----CATTTATTAGGATTTTTGCCGGTTCGAATG-----AA---------------ATGAAAATATTGCCCAA-------------CGCCGCACACTATT-ATTGAATAACGTGA-CATTGT---AT-ATT-TCA-TTGGTGATAT--------GCGATCAGAATGGCAGACAATAT-T-ACTCTTTACAGCACAG----taaacgtttttaataattttatgtacttgaaatgtttgatggaaaaggggtcaccagaatagattattcttttcacaacaaatttgtatttcctaatgatatatttaatatcattagaaattgacatacaccttcaaaatagcattgacgtgcgttcattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTCCAAACCATCAGTTAAAAAAGAGCGGCTTTGTGTTTATTCATCAGGATCATCATCAGCAGCAGCAGCAGCAGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111
lowQualScore : 11111 222222 11111111111111 1111 111 111 44444444444444 11111 11111 1111111 11 1 1111 111 2222222222222222222 2222 666666666666666666666666666666666666666666666666 222 111 11111111 1111
lowQualScore : 00000 1 111111 5 6 1 44444444444444 4444 4 7 8 000 000 44444444444444 22222 888 11111 1 3 8888888 0 55 11 4 4 2 4 7777 4 666 4 0 3333333333333333333 66 0 3333 0 777 444444444444444444444444444444444444444444444444 6 111 000 5 5 5 1 88888888 1 7 5 5 0000 0
lowQualScore : ..... . ...... . . . .............. .... . . . ... ... .............. ..... ... ..... . . ....... . .. .. . . . . .... . ... . . ................... .. . .... . ... ................................................ . ... ... . . . . ........ . . . . .... .
lowQualScore : 22222 0 222222 2 0 7 00000000000000 2222 2 3 7 000 000 44444444444444 55555 888 00000 0 0 6666666 2 55 00 0 0 0 0 0000 0 444 0 1 5555555555555555555 11 1 2222 7 888 222222222222222222222222222222222222222222222222 7 777 000 7 7 7 9 11111111 0 6 0 0 6666 1
consensus : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATANA-ATG-----------CAA---------C-----A-C--------------A-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
Reference ( family-2136 ) : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATAAA-ATG-----------CAA---------CG----A-C--------------A-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
gi|1 : CTAGGACTACTACGTTTCAACGATGGATAATTCAGTGGGATTAATGTTAC------AGATTCTTTGCGTAATTTTAAATCA-CATTGCAACAGATTCTTTGAAA----CTTGGTACGTTTCTGAAAAAAATATTAAACCA---ATGAAA---TTTGAT-----T-A------TGC-----TCGA---CACT----AAAAAATTGTATATTCT-------ATATTTATTTGTGTTACTGTATCACC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-TAAAATAAG-TATATTAGGATACATATT---------ATC-------TAAGATGCCGAA--TCTGATGTTATGCGACATTCATTAGGATTATTGACGACTGGAATAAA-GTG-------------A---------C------------------------TATT-ATTGAAAGATGTGA-T-TTGT---AT-ATT-TCA-TTGGTTAAAT--------GAAGTCACACTGGTAAAAAGAAT-T-GCCCTTCACAGCACAG----TGTCTCCTTT
gi|10 : tTAGCACTACAACGTTT-----GT---------ATAAGGATTAATATTAC------AGATT------GTGA--TGAA--CA-CAC-----------------AA----CTTGATGAGTTTCTGAAACTTA-ATTAAAATA---TCGAAA---TTTTATAACTCTAA------TGT-----TCGT---CACT----ACATAAAAGAATGATCT-------AGACTTACTTCTGTAACTATATCAGC--TTGGTATTCGCACTGAGAA-T-AATC-AA----AA-CAAAAC-AG-TACAA
gi|11 : atacactgAT--------GTGGTCACACTGGTAGATAGAAT-T-ACCCTTCACAGCTCAG----TATCTCCTTTta
gi|12 : caTAGGACTACTATGTTAAATCGGAGGACGACTGATTAGGATTTATGTTAC------AGATTCTTTGCATAAATTGAAGTCAGCA-TGCAAAAGGTTCTTTGAAA----CTAAATGAGTTTCTGAAAAAAA-ATTGAAATA---TTGAAA---TTTTAT-----Tcagacgtttttgataaattgactttgaaggacactgggcttcagaacagataattcttttcagttcaaactttatctcataaagatatatttgatatcattgtatcatcgatacaccataaccttctaaattgcattactatccattcattaa
gi|13 : tgGT-----TCGT---AACT----TTACAGTAGAATAAACT-------AAACTTGTTTTTTTTACTATATCTGC--GTGGTAT--GCACTTACAA-T-AATC-AAAAAGAA-AAAAAAAAG-AATAAAAGGAAACTTATT---------CATCAACCGCTGAAATGTAAAAGTCCTTGTGTTATttattttttaaaactgtaatgat
gi|15 : TAAGACCAATACGTTTCAGCGTTGGATGATTCACTATGATTAACATTAT------AGATTttgtattca
gi|16 : TAGAACCACTACTTTTCAGCGGGGGATGATTCATAAGAGTCAATGTTAC------AGATacatgttctttg
gi|17 : gcacgT-------TCAGATGGTGAG--CCTGATGTTATGT---ATTCATTAGGATTCCTGTCGATTGG
gi|2 : CTATGACTTTTATGCTCCTGCGGTGG-------ATAAGGATTATTTTTTCTT----TTTTTTTTTGCGTAAGCTAAGATTA-CCTTGCAACAGAGTCTTCGACA----CATAATAAGCTTCTG-AAATAATATTGAAATC---TTGCTA---CTTTAC-----C-G------TAT-----TCGTATGCACT-----TAGAcaa
gi|2 : TCTTGCTACTTTACCGTA--TTCGTAT--GCACTTAGACTT-AT-C-AA----AA-CAAAA-ACG-TATACAAAGATACAGAGT---------CGT-------TAAAATGACAAA--CTTGATGTTATG---CATGCATAAGAGTTATTGTTGAAT---ATAAATATG-----------CAA---------TC----A-C--------------A-GTTTAATTGAGTAAAGCGGTT-TTGT---AT-ATT-TTATTTAGTTTCAC--------GCTGTCACACTGGTAGACAGAAT-TAAACTTTTATAGCACAGTACATATCTCCTTTcttatcaaaacaaaaacgtatacaaagatacagagtcgttaaaatgacaaacttgatgttatgcatgcataagagttattgttgaatataaatatgcaatcacagtttaattgagtaaagcggttttgtatattttatttagtttcacgctgtcacactggtagacagaattaaacttttatagcacagtacatatctccttttaaacgtttttgataagtttgtctattcaaaatttttg
gi|3 : ctatgacttttatgctcctgcggtggataaggattattttttctttttttttttgcgtaagctaagattaccttgcaacagagtcttcgacacataataagcttctgaaataatattgaaaGAATTATTTCTGCTACTATATCAGCATTTGGAAT--ATACTTGGAA-TTAG-C-AA----CA-CAAAACAAGATA-AAAAGAATACAGATTATTCGGATTCCT-------TGAGATGCGGAA--C--------A-----CATTCATTAGGATTACTGCCTATTGGAATATA-ATG-----------AAAATATTGCCCCG----AGCATCACA--------A-TATT-ATAGAATAACATTG-TGTTAT---AT-GTT-TTA-TTGGTTACAT--------ACGGCCACACTGGTAGACA-AATGT-ACCCTTCACAGCAGAT----T-TTTCCTTTtaaacgtttttgataagtttgtctattcaaaatttttg
gi|4 : ------TGT-----TTGT---CACT----ATGTAGTAGAATAAC-T-------AGGCT-ATTTTTGTTACAGTATCAGC--TTGGTATATGCACTGAGAA-T-GA-T-AA----AAACAAACC--G-TATAAAAGGATTTAGATT---------CTT-------TGAGATGCCAAA--CCTGATGTTATGC---ATTCATTACAATTATTGTCAATTGGAATACC-ATG-----------CAA----------------------------------TATT-ATCGAGTATCATGA-TATTGT---AT-ACT-TTA-TTGGTTACAT--------GCAGTCACAATGGTAAAGAGAAT-T-ACCCTTCACAGCACAC----TATCTCTTTtaaaccttttttccctaaaataatagtattaaaaaactgaattttgattattcttatcactacaaaattaatttataaagatatatt
gi|5 : ttTATTGAAATT---TTGAAA---TTATAT-----TAACTGTAATGT-----TCGT---CATTTATTATAAAGATGATTAACCTTAGTGCTAGATTTATTTTTGTTACTAAATCAGC--TTGGTAC--ACACATAGAA-T-AATC-AA----AA-CAAAAT-TG-TATTAAA-GATACAGATT---------TAT-------CAAGATGCTGAA--CCTGATGTTGCG---CATTCATTAGGATTATTGTCAATTGGAATATG-ATG-----------AAAATATTT---CC----A-CACGTATGCATCATGA-TATT-ATTGAATAACGTGATT-TTGTTTCATCATCATTA-TCAGCAGCAGCAGCAGCAGCGGTCACACTGATAGAAA-AAT-T-ACCTTTCACAGTACAG----TAcaaacaattttgataattttctgttaatacaaatgttgatcttcatcaataaacattcaattgtaataata
gi|6 : GGACTACTACGTTTCAGCTGTGGCTGATTCATAAGGAATAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CCTTTCAG-------TTTGAAATCATCTT--TGAGTTTCGG--AAAAAT-CTGAAATAATTTTGCAATTGTTTTATCTA--TAC------TGT-----TCGT---AACT----ATATAGTAGAATAACAT-------AATCTTTTTTTT----CTATATCTGT--GTATTAT--GCACCTAGGA-T-AA-CTAA----AA-C---ACATG-TAAAAAATTATACAAATG---------TTT-------TGAGAT-TCAAA--CCTGATGTTTTGC--AAT
gi|7 : ctgttTAAGACTACTACATCTCAGCGGCGGGT---TCATTAGGATTAATATTACTGTAACATATTGTTTACGTAAATTGATATCAACAT-GCTATAGGTTCTTTAAAA----CTTAATGCGTTTCTGACAAAAAAATTGAAATA---TTGAAA---TGTAAT-----TAAC-----TGTTATGATTAC---CGCT----ATAGTGTAGAATAACTT-------ACACTTTTTTTTGTTATTATATCAGC--TTGGTAT--AAATTTAGAA-T-AA-T-AA----AA--A----GAG-TATAAAAGG-TACAAATT---------GTT-------T
gi|8 : ctg-T-TTGT---AT-ATT-TTA-TTGATAACAT--------GCGGTCACGCTGATACAAACAA--T-ACCATTCACAGCACAG----TATCTCCTTT
gi|9 : C--TTGGCAT--ACACTTA-AA-T-AA-T-AATCTAAA-CCAAA-AAG-TGTAGAAGGATACAGATT---------CTT-------TGAGATGCCAAA--CATGATGTTAT----CATTTATTAGGATTTTTGCCGGTTCGAATGAA-ATGAAAATATTGCCCAA---------CGCCGCA-C--------------ACTATT-ATTGAATAACGTGA-CATTGT---AT-ATT-TCA-TTGGTGATAT--------GCGATCAGAATGGCAGACAATAT-T-ACTCTTTACAGCACAG----taaacgtttttaataattttatgtacttgaaatgtttgatggaaaaggggtcaccagaatagattattcttttcacaacaaatttgtatttcctaatgatatatttaatatcattagaaattgacatacaccttcaaaatagcattgacgtgcgttcattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTCCAAACCATCAGTTAAAAAAGAGCGGCTTTGTGTTTATTCATCAGGATCATCATCAGCAGCAGCAGCAGCAGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 11111 222222 11111111111111 1111 111 111 44444444444444 11111 11111 1111111 11 1 1111 111 2222222222222222222 2222 66666666666666666666666666666666666666666666666 222 111 11111111 1111
lowQualScore : 00000 1 111111 5 6 1 44444444444444 4444 4 7 8 000 000 44444444444444 22222 888 11111 1 3 8888888 0 55 11 4 4 2 4 7777 4 666 4 0 3333333333333333333 66 0 3333 0 1 6 44444444444444444444444444444444444444444444444 6 111 000 5 5 5 1 88888888 1 7 5 5 0000 0
lowQualScore : ..... . ...... . . . .............. .... . . . ... ... .............. ..... ... ..... . . ....... . .. .. . . . . .... . ... . . ................... .. . .... . . . ............................................... . ... ... . . . . ........ . . . . .... .
lowQualScore : 22222 0 222222 2 0 7 00000000000000 2222 2 3 7 000 000 44444444444444 55555 888 00000 0 0 6666666 2 55 00 0 0 0 0 0000 0 444 0 1 5555555555555555555 11 1 2222 7 0 7 77777777777777777777777777777777777777777777777 7 777 000 7 7 7 9 11111111 0 6 0 0 6666 1
consensus : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATANA-ATG-----------CAA----------------CAC------------A-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
Reference ( family-2136 ) : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATANA-ATG-----------CAA----------------CAC------------A-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
gi|1 : CTAGGACTACTACGTTTCAACGATGGATAATTCAGTGGGATTAATGTTAC------AGATTCTTTGCGTAATTTTAAATCA-CATTGCAACAGATTCTTTGAAA----CTTGGTACGTTTCTGAAAAAAATATTAAACCA---ATGAAA---TTTGAT-----T-A------TGC-----TCGA---CACT----AAAAAATTGTATATTCT-------ATATTTATTTGTGTTACTGTATCACC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-TAAAATAAG-TATATTAGGATACATATT---------ATC-------TAAGATGCCGAA--TCTGATGTTATGCGACATTCATTAGGATTATTGACGACTGGAATAAA-GTG-------------A----------------C----------------TATT-ATTGAAAGATGTGA-T-TTGT---AT-ATT-TCA-TTGGTTAAAT--------GAAGTCACACTGGTAAAAAGAAT-T-GCCCTTCACAGCACAG----TGTCTCCTTT
gi|10 : tTAGCACTACAACGTTT-----GT---------ATAAGGATTAATATTAC------AGATT------GTGA--TGAA--CA-CAC-----------------AA----CTTGATGAGTTTCTGAAACTTA-ATTAAAATA---TCGAAA---TTTTATAACTCTAA------TGT-----TCGT---CACT----ACATAAAAGAATGATCT-------AGACTTACTTCTGTAACTATATCAGC--TTGGTATTCGCACTGAGAA-T-AATC-AA----AA-CAAAAC-AG-TACAA
gi|11 : atacactgAT--------GTGGTCACACTGGTAGATAGAAT-T-ACCCTTCACAGCTCAG----TATCTCCTTTta
gi|12 : caTAGGACTACTATGTTAAATCGGAGGACGACTGATTAGGATTTATGTTAC------AGATTCTTTGCATAAATTGAAGTCAGCA-TGCAAAAGGTTCTTTGAAA----CTAAATGAGTTTCTGAAAAAAA-ATTGAAATA---TTGAAA---TTTTAT-----Tcagacgtttttgataaattgactttgaaggacactgggcttcagaacagataattcttttcagttcaaactttatctcataaagatatatttgatatcattgtatcatcgatacaccataaccttctaaattgcattactatccattcattaa
gi|13 : tgGT-----TCGT---AACT----TTACAGTAGAATAAACT-------AAACTTGTTTTTTTTACTATATCTGC--GTGGTAT--GCACTTACAA-T-AATC-AAAAAGAA-AAAAAAAAG-AATAAAAGGAAACTTATT---------CATCAACCGCTGAAATGTAAAAGTCCTTGTGTTATttattttttaaaactgtaatgat
gi|15 : TAAGACCAATACGTTTCAGCGTTGGATGATTCACTATGATTAACATTAT------AGATTttgtattca
gi|16 : TAGAACCACTACTTTTCAGCGGGGGATGATTCATAAGAGTCAATGTTAC------AGATacatgttctttg
gi|17 : gcacgT-------TCAGATGGTGAG--CCTGATGTTATGT---ATTCATTAGGATTCCTGTCGATTGG
gi|2 : CTATGACTTTTATGCTCCTGCGGTGG-------ATAAGGATTATTTTTTCTT----TTTTTTTTTGCGTAAGCTAAGATTA-CCTTGCAACAGAGTCTTCGACA----CATAATAAGCTTCTG-AAATAATATTGAAATC---TTGCTA---CTTTAC-----C-G------TAT-----TCGTATGCACT-----TAGAcaa
gi|2 : TCTTGCTACTTTACCGTA--TTCGTAT--GCACTTAGACTT-AT-C-AA----AA-CAAAA-ACG-TATACAAAGATACAGAGT---------CGT-------TAAAATGACAAA--CTTGATGTTATG---CATGCATAAGAGTTATTGTTGAAT---ATAAATATG-----------CAAT---------------CAC------------A-GTTTAATTGAGTAAAGCGGTT-TTGT---AT-ATT-TTATTTAGTTTCAC--------GCTGTCACACTGGTAGACAGAAT-TAAACTTTTATAGCACAGTACATATCTCCTTTcttatcaaaacaaaaacgtatacaaagatacagagtcgttaaaatgacaaacttgatgttatgcatgcataagagttattgttgaatataaatatgcaatcacagtttaattgagtaaagcggttttgtatattttatttagtttcacgctgtcacactggtagacagaattaaacttttatagcacagtacatatctccttttaaacgtttttgataagtttgtctattcaaaatttttg
gi|3 : ctatgacttttatgctcctgcggtggataaggattattttttctttttttttttgcgtaagctaagattaccttgcaacagagtcttcgacacataataagcttctgaaataatattgaaaGAATTATTTCTGCTACTATATCAGCATTTGGAAT--ATACTTGGAA-TTAG-C-AA----CA-CAAAACAAGATA-AAAAGAATACAGATTATTCGGATTCCT-------TGAGATGCGGAA--C--------A-----CATTCATTAGGATTACTGCCTATTGGAATATA-ATG-----------AAAATATTGCCCCGAGCATCACA-----------A-TATT-ATAGAATAACATTG-TGTTAT---AT-GTT-TTA-TTGGTTACAT--------ACGGCCACACTGGTAGACA-AATGT-ACCCTTCACAGCAGAT----T-TTTCCTTTtaaacgtttttgataagtttgtctattcaaaatttttg
gi|4 : ------TGT-----TTGT---CACT----ATGTAGTAGAATAAC-T-------AGGCT-ATTTTTGTTACAGTATCAGC--TTGGTATATGCACTGAGAA-T-GA-T-AA----AAACAAACC--G-TATAAAAGGATTTAGATT---------CTT-------TGAGATGCCAAA--CCTGATGTTATGC---ATTCATTACAATTATTGTCAATTGGAATACC-ATG-----------CAA---------------------------------TATT-ATCGAGTATCATGA-TATTGT---AT-ACT-TTA-TTGGTTACAT--------GCAGTCACAATGGTAAAGAGAAT-T-ACCCTTCACAGCACAC----TATCTCTTTtaaaccttttttccctaaaataatagtattaaaaaactgaattttgattattcttatcactacaaaattaatttataaagatatatt
gi|5 : ttTATTGAAATT---TTGAAA---TTATAT-----TAACTGTAATGT-----TCGT---CATTTATTATAAAGATGATTAACCTTAGTGCTAGATTTATTTTTGTTACTAAATCAGC--TTGGTAC--ACACATAGAA-T-AATC-AA----AA-CAAAAT-TG-TATTAAA-GATACAGATT---------TAT-------CAAGATGCTGAA--CCTGATGTTGCG---CATTCATTAGGATTATTGTCAATTGGAATATG-ATGAAAATATTT--CCA----------------CACGTATGCATCATGA-TATT-ATTGAATAACGTGATT-TTGTTTCATCATCATTA-TCAGCAGCAGCAGCAGCAGCGGTCACACTGATAGAAA-AAT-T-ACCTTTCACAGTACAG----TAcaaacaattttgataattttctgttaatacaaatgttgatcttcatcaataaacattcaattgtaataata
gi|6 : GGACTACTACGTTTCAGCTGTGGCTGATTCATAAGGAATAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CCTTTCAG-------TTTGAAATCATCTT--TGAGTTTCGG--AAAAAT-CTGAAATAATTTTGCAATTGTTTTATCTA--TAC------TGT-----TCGT---AACT----ATATAGTAGAATAACAT-------AATCTTTTTTTT----CTATATCTGT--GTATTAT--GCACCTAGGA-T-AA-CTAA----AA-C---ACATG-TAAAAAATTATACAAATG---------TTT-------TGAGAT-TCAAA--CCTGATGTTTTGC--AAT
gi|7 : ctgttTAAGACTACTACATCTCAGCGGCGGGT---TCATTAGGATTAATATTACTGTAACATATTGTTTACGTAAATTGATATCAACAT-GCTATAGGTTCTTTAAAA----CTTAATGCGTTTCTGACAAAAAAATTGAAATA---TTGAAA---TGTAAT-----TAAC-----TGTTATGATTAC---CGCT----ATAGTGTAGAATAACTT-------ACACTTTTTTTTGTTATTATATCAGC--TTGGTAT--AAATTTAGAA-T-AA-T-AA----AA--A----GAG-TATAAAAGG-TACAAATT---------GTT-------T
gi|8 : ctg-T-TTGT---AT-ATT-TTA-TTGATAACAT--------GCGGTCACGCTGATACAAACAA--T-ACCATTCACAGCACAG----TATCTCCTTT
gi|9 : C--TTGGCAT--ACACTTA-AA-T-AA-T-AATCTAAA-CCAAA-AAG-TGTAGAAGGATACAGATT---------CTT-------TGAGATGCCAAA--CATGATGTTAT----CATTTATTAGGATTTTTGCCGGTTCGAATGAA-ATGAAAATATTGCCCAACGCCG-----------CAC------------ACTATT-ATTGAATAACGTGA-CATTGT---AT-ATT-TCA-TTGGTGATAT--------GCGATCAGAATGGCAGACAATAT-T-ACTCTTTACAGCACAG----taaacgtttttaataattttatgtacttgaaatgtttgatggaaaaggggtcaccagaatagattattcttttcacaacaaatttgtatttcctaatgatatatttaatatcattagaaattgacatacaccttcaaaatagcattgacgtgcgttcattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTCCAAACCATCAGTTAAAAAAGAGCGGCTTTGTGTTTATTCATCAGGATCATCATCAGCAGCAGCAGCAGCAGC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111
lowQualScore : 11111 222222 11111111111111 1111 111 111 44444444444444 11111 11111 1111111 11 1 1111 111 2222222222222222222 2222 66666666666666666666666666666666666666666666666 222 111 11111111 1111
lowQualScore : 00000 1 111111 5 6 1 44444444444444 4444 4 7 8 000 000 44444444444444 22222 888 11111 1 3 8888888 0 55 11 4 4 2 4 7777 4 666 4 0 3333333333333333333 66 0 3333 0 1 6 44444444444444444444444444444444444444444444444 6 111 000 5 5 5 1 88888888 1 7 5 5 0000 0
lowQualScore : ..... . ...... . . . .............. .... . . . ... ... .............. ..... ... ..... . . ....... . .. .. . . . . .... . ... . . ................... .. . .... . . . ............................................... . ... ... . . . . ........ . . . . .... .
lowQualScore : 22222 0 222222 2 0 7 00000000000000 2222 2 3 7 000 000 44444444444444 55555 888 00000 0 0 6666666 2 55 00 0 0 0 0 0000 0 444 0 1 5555555555555555555 11 1 2222 7 0 7 77777777777777777777777777777777777777777777777 7 777 000 7 7 7 9 11111111 0 6 0 0 6666 1
consensus : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATANA-ATG-----------CAA----------------CAC------------A-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
Reference ( family-2136 ) : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATANA-ATG-----------CAA----------------CAC------------A-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
gi|1 : CTAGGACTACTACGTTTCAACGATGGATAATTCAGTGGGATTAATGTTAC------AGATTCTTTGCGTAATTTTAAATCA-CATTGCAACAGATTCTTTGAAA----CTTGGTACGTTTCTGAAAAAAATATTAAACCA---ATGAAA---TTTGAT-----T-A------TGC-----TCGA---CACT----AAAAAATTGTATATTCT-------ATATTTATTTGTGTTACTGTATCACC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-TAAAATAAG-TATATTAGGATACATATT---------ATC-------TAAGATGCCGAA--TCTGATGTTATGCGACATTCATTAGGATTATTGACGACTGGAATAAA-GTG-------------A----------------C----------------TATT-ATTGAAAGATGTGA-T-TTGT---AT-ATT-TCA-TTGGTTAAAT--------GAAGTCACACTGGTAAAAAGAAT-T-GCCCTTCACAGCACAG----TGTCTCCTTT
gi|10 : tTAGCACTACAACGTTT-----GT---------ATAAGGATTAATATTAC------AGATT------GTGA--TGAA--CA-CAC-----------------AA----CTTGATGAGTTTCTGAAACTTA-ATTAAAATA---TCGAAA---TTTTATAACTCTAA------TGT-----TCGT---CACT----ACATAAAAGAATGATCT-------AGACTTACTTCTGTAACTATATCAGC--TTGGTATTCGCACTGAGAA-T-AATC-AA----AA-CAAAAC-AG-TACAA
gi|11 : atacactgAT--------GTGGTCACACTGGTAGATAGAAT-T-ACCCTTCACAGCTCAG----TATCTCCTTTta
gi|12 : caTAGGACTACTATGTTAAATCGGAGGACGACTGATTAGGATTTATGTTAC------AGATTCTTTGCATAAATTGAAGTCAGCA-TGCAAAAGGTTCTTTGAAA----CTAAATGAGTTTCTGAAAAAAA-ATTGAAATA---TTGAAA---TTTTAT-----Tcagacgtttttgataaattgactttgaaggacactgggcttcagaacagataattcttttcagttcaaactttatctcataaagatatatttgatatcattgtatcatcgatacaccataaccttctaaattgcattactatccattcattaa
gi|13 : tgGT-----TCGT---AACT----TTACAGTAGAATAAACT-------AAACTTGTTTTTTTTACTATATCTGC--GTGGTAT--GCACTTACAA-T-AATC-AAAAAGAA-AAAAAAAAG-AATAAAAGGAAACTTATT---------CATCAACCGCTGAAATGTAAAAGTCCTTGTGTTATttattttttaaaactgtaatgat
gi|15 : TAAGACCAATACGTTTCAGCGTTGGATGATTCACTATGATTAACATTAT------AGATTttgtattca
gi|16 : TAGAACCACTACTTTTCAGCGGGGGATGATTCATAAGAGTCAATGTTAC------AGATacatgttctttg
gi|17 : gcacgT-------TCAGATGGTGAG--CCTGATGTTATGT---ATTCATTAGGATTCCTGTCGATTGG
gi|2 : CTATGACTTTTATGCTCCTGCGGTGG-------ATAAGGATTATTTTTTCTT----TTTTTTTTTGCGTAAGCTAAGATTA-CCTTGCAACAGAGTCTTCGACA----CATAATAAGCTTCTG-AAATAATATTGAAATC---TTGCTA---CTTTAC-----C-G------TAT-----TCGTATGCACT-----TAGAcaa
gi|2 : TCTTGCTACTTTACCGTA--TTCGTAT--GCACTTAGACTT-AT-C-AA----AA-CAAAA-ACG-TATACAAAGATACAGAGT---------CGT-------TAAAATGACAAA--CTTGATGTTATG---CATGCATAAGAGTTATTGTTGAAT---ATAAATATG-----------CAAT---------------CAC------------A-GTTTAATTGAGTAAAGCGGTT-TTGT---AT-ATT-TTATTTAGTTTCAC--------GCTGTCACACTGGTAGACAGAAT-TAAACTTTTATAGCACAGTACATATCTCCTTTcttatcaaaacaaaaacgtatacaaagatacagagtcgttaaaatgacaaacttgatgttatgcatgcataagagttattgttgaatataaatatgcaatcacagtttaattgagtaaagcggttttgtatattttatttagtttcacgctgtcacactggtagacagaattaaacttttatagcacagtacatatctccttttaaacgtttttgataagtttgtctattcaaaatttttg
gi|3 : ctatgacttttatgctcctgcggtggataaggattattttttctttttttttttgcgtaagctaagattaccttgcaacagagtcttcgacacataataagcttctgaaataatattgaaaGAATTATTTCTGCTACTATATCAGCATTTGGAAT--ATACTTGGAA-TTAG-C-AA----CA-CAAAACAAGATA-AAAAGAATACAGATTATTCGGATTCCT-------TGAGATGCGGAA--C--------A-----CATTCATTAGGATTACTGCCTATTGGAATATA-ATG-----------AAAATATTGCCCCGAGCATCACA-----------A-TATT-ATAGAATAACATTG-TGTTAT---AT-GTT-TTA-TTGGTTACAT--------ACGGCCACACTGGTAGACA-AATGT-ACCCTTCACAGCAGAT----T-TTTCCTTTtaaacgtttttgataagtttgtctattcaaaatttttg
gi|4 : ------TGT-----TTGT---CACT----ATGTAGTAGAATAAC-T-------AGGCT-ATTTTTGTTACAGTATCAGC--TTGGTATATGCACTGAGAA-T-GA-T-AA----AAACAAACC--G-TATAAAAGGATTTAGATT---------CTT-------TGAGATGCCAAA--CCTGATGTTATGC---ATTCATTACAATTATTGTCAATTGGAATACC-ATG-----------CAA---------------------------------TATT-ATCGAGTATCATGA-TATTGT---AT-ACT-TTA-TTGGTTACAT--------GCAGTCACAATGGTAAAGAGAAT-T-ACCCTTCACAGCACAC----TATCTCTTTtaaaccttttttccctaaaataatagtattaaaaaactgaattttgattattcttatcactacaaaattaatttataaagatatatt
gi|5 : ttTATTGAAATT---TTGAAA---TTATAT-----TAACTGTAATGT-----TCGT---CATTTATTATAAAGATGATTAACCTTAGTGCTAGATTTATTTTTGTTACTAAATCAGC--TTGGTAC--ACACATAGAA-T-AATC-AA----AA-CAAAAT-TG-TATTAAA-GATACAGATT---------TAT-------CAAGATGCTGAA--CCTGATGTTGCG---CATTCATTAGGATTATTGTCAATTGGAATATG-ATGAAAATATTT--CCA----------------CACGTATGCATCATGA-TATT-ATTGAATAACGTGATT-TTGTTTCATCATCATTA-TCAGCAGCAGCAGCAGCAGCGGTCACACTGATAGAAA-AAT-T-ACCTTTCACAGTACAG----TAcaaacaattttgataattttctgttaatacaaatgttgatcttcatcaataaacattcaattgtaataata
gi|6 : GGACTACTACGTTTCAGCTGTGGCTGATTCATAAGGAATAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CCTTTCAG-------TTTGAAATCATCTT--TGAGTTTCGG--AAAAAT-CTGAAATAATTTTGCAATTGTTTTATCTA--TAC------TGT-----TCGT---AACT----ATATAGTAGAATAACAT-------AATCTTTTTTTT----CTATATCTGT--GTATTAT--GCACCTAGGA-T-AA-CTAA----AA-C---ACATG-TAAAAAATTATACAAATG---------TTT-------TGAGAT-TCAAA--CCTGATGTTTTGC--AAT
gi|7 : ctgttTAAGACTACTACATCTCAGCGGCGGGT---TCATTAGGATTAATATTACTGTAACATATTGTTTACGTAAATTGATATCAACAT-GCTATAGGTTCTTTAAAA----CTTAATGCGTTTCTGACAAAAAAATTGAAATA---TTGAAA---TGTAAT-----TAAC-----TGTTATGATTAC---CGCT----ATAGTGTAGAATAACTT-------ACACTTTTTTTTGTTATTATATCAGC--TTGGTAT--AAATTTAGAA-T-AA-T-AA----AA--A----GAG-TATAAAAGG-TACAAATT---------GTT-------T
gi|8 : ctg-T-TTGT---AT-ATT-TTA-TTGATAACAT--------GCGGTCACGCTGATACAAACAA--T-ACCATTCACAGCACAG----TATCTCCTTT
gi|9 : C--TTGGCAT--ACACTTA-AA-T-AA-T-AATCTAAA-CCAAA-AAG-TGTAGAAGGATACAGATT---------CTT-------TGAGATGCCAAA--CATGATGTTAT----CATTTATTAGGATTTTTGCCGGTTCGAATGAA-ATGAAAATATTGCCCAACGCCG-----------CAC------------ACTATT-ATTGAATAACGTGA-CATTGT---AT-ATT-TCA-TTGGTGATAT--------GCGATCAGAATGGCAGACAATAT-T-ACTCTTTACAGCACAG----taaacgtttttaataattttatgtacttgaaatgtttgatggaaaaggggtcaccagaatagattattcttttcacaacaaatttgtatttcctaatgatatatttaatatcattagaaattgacatacaccttcaaaatagcattgacgtgcgttcattaa
blockSeqs : ACGAC A TGTAAC C A G GCATGCAAAAGGT TCAT G A T ATT TTG TAACTGTAA TATGA ATG TATTA T C TAGTGCT AT TC T T T T AAAG A AAA A ATTCGGATTCCT GT CA A T AAAATATTTCCACACGTATGCATCATGA A TT TTC C A T T CAGCAGCA T G G A TACA
blockSeqs : ATGAT T TT T G A CCTTGCAACAGAG . A A T . . AACTCTAA . . A C C . . AT . . T . TCTA . CAA . CATCAACCGC . T T . AAAATATTGCCCCGAGCATCACAA . TG . . . . T . C G . . .
blockSeqs : ATGAT T . C A A ACATGCTATAGGT . A A T . . CTATAC . . T G C . . . . . T . . . CAT . CGT . C C . AAAATATTGCCCAACGCCGCACAC . TA . . . . T . C G . . .
blockSeqs : CTGAT A . G A A CCTTTCAG . A . A . . TAAC . . A T A . . . . . . . . . CA . CTT . C T . CAATCACA . TT . . . . A . G C . . .
blockSeqs : GT A . . . . CAC . . . . . . CG . . A A T . . . . . . . . . AC . TAT . C A . CAA . CA . . . . A . A A . . .
blockSeqs : . A . . . . . . A T . . . . . . . . . . TT . TTT . C T . . . . G . A . . . .
blockSeqs : . T . . . . G . . . . . . . . GA . GTT . C . C . . . .
blockSeqs : . . . . . . . . AA . CTT .
blockSeqs : . . . . . . . . C .
blockSeqCons : CAACTTAN****** NA* C*** AAAATATTCCCGGCTCACGA*************************** TN*
originalCons : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTAT-----TAA------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAACAAG-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC--CATTCATTAGGATTATTGTCGATTGGAATANA-ATG-----------CAA----------------CAC------------A-TATT-ATTGAATAACGTGA-T-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
finalCons : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTATCAACTTAN------TGT-----TCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAA-T-AA-C-AA----AA-CAAAANA-G-TATAAAAGGATACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTATGC---ATTCATTAGGATTATTGTCGATTGGAATANA-ATGAAAATATTCCCGGCTCACGA---------------------------TATT-ATTGAATAACGTGATN-TTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTCCAAACCATCAGTTAAAAAAGAGCGGCTTTGTGTTTATTCATCAGGATCATCATCAGCAGCAGCAGCAGCAGC
Alignments
lowQualScore : 111111111111111111111111111111111
lowQualScore : 11111 222222 11111111111111 1111 111 111 444444444 11111 1111111 11 22222222222222 2222222222222222222 000000000000000000000000000000000 111 11111111 1111
lowQualScore : 00000 1 111111 5 6 1 44444444444444 4444 4 7 8 000 000 888888888 888 11111 1 3 8888888 0 55 11 4 00000000000000 0 7777 1 4 3333333333333333333 66 0 66 777 5 66 666666666666666666666666666666666 7 000 5 5 5 1 88888888 1 7 5 5 0000 0
lowQualScore : ..... . ...... . . . .............. .... . . . ... ... ......... ... ..... . . ....... . .. .. . .............. . .... . . ................... .. . .. ... . .. ................................. . ... . . . . ........ . . . . .... .
lowQualScore : 22222 0 222222 2 0 7 00000000000000 2222 2 3 7 000 000 333333333 888 00000 0 0 6666666 2 55 00 0 22222222222222 7 4444 9 4 5555555555555555555 11 1 11 888 3 77 555555555555555555555555555555555 5 000 7 7 7 9 11111111 0 6 0 0 6666 1
consensus : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTATTAACT-TAATGTTCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAAT-AATC-A-----A----AACAAAA-NA-GTATAAAAGGA-TACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTA--TG---CATTCATTAGGATTATTGTCGATTGGAATANAATGAAAATATT--CC--CG-------GCA-TCACAATATTATTGAATAACGTGATNTTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
Reference ( family-2136 ) : NCTAGGACTACTACGTTTCAGCGGTGGATGATTCATNAGGATTAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CATTGCAACAGGTTCTTTGAAA----CTTAATGAGTTTCTGAAAAAAATATTGAAATA---TTGAAA---TTTTATCAACT-TANTGTTCGT---CACT----ATANAGTAGAATAACCT-------AGACTTATTTTTGTTACTATATCAGC--TTGGTAT--GCACTTAGAAT-AA-C-A-----A----AACAAAA-NA-GTATAAAAGGA-TACAGATT---------CTT-------TGAGATGCCGAA--CCTGATGTTA--TG---CATTCATTAGGATTATTGTCGATTGGAATANAATGAAAATATT--CC--CG-------GC--TCACGATATTATTGAATAACGTGATNTTGT---AT-ATT-TTA-TTGGTTACAT--------GCGGTCACACTGGTAGANAGAAT-T-ACCCTTCACAGCACAG----TATCTCCTTT
gi|1 : CTAGGACTACTACGTTTCAACGATGGATAATTCAGTGGGATTAATGTTAC------AGATTCTTTGCGTAATTTTAAATCA-CATTGCAACAGATTCTTTGAAA----CTTGGTACGTTTCTGAAAAAAATATTAAACCA---ATGAAA---TTTGATTA-------TGCTCGA---CACT----AAAAAATTGTATATTCT-------ATATTTATTTGTGTTACTGTATCACC--TTGGTAT--GCACTTAGAAT-AA-C-A-----A----AATAAAATAA-GTATATTAGGA-TACATATT---------ATC-------TAAGATGCCGAA--TCTGATGTTA--TGCGACATTCATTAGGATTATTGACGACTGGAATAAAGTGA---------C----------------------TATTATTGAAAGATGTGAT-TTGT---AT-ATT-TCA-TTGGTTAAAT--------GAAGTCACACTGGTAAAAAGAAT-T-GCCCTTCACAGCACAG----TGTCTCCTTT
gi|10 : tTAGCACTACAACGTTT-----GT---------ATAAGGATTAATATTAC------AGATT------GTGA--TGAA--CA-CAC-----------------AA----CTTGATGAGTTTCTGAAACTTA-ATTAAAATA---TCGAAA---TTTTAT-AACTCTAATGTTCGT---CACT----ACATAAAAGAATGATCT-------AGACTTACTTCTGTAACTATATCAGC--TTGGTATTCGCACTGAGAAT-AATC-A-----A----AACAAAA-CA-GTACAA
gi|11 : atacactgAT--------GTGGTCACACTGGTAGATAGAAT-T-ACCCTTCACAGCTCAG----TATCTCCTTTta
gi|12 : caTAGGACTACTATGTTAAATCGGAGGACGACTGATTAGGATTTATGTTAC------AGATTCTTTGCATAAATTGAAGTCAGCA-TGCAAAAGGTTCTTTGAAA----CTAAATGAGTTTCTGAAAAAAA-ATTGAAATA---TTGAAA---TTTTATcagacgtttttgataaattgactttgaaggacactgggcttcagaacagataattcttttcagttcaaactttatctcataaagatatatttgatatcattgtatcatcgatacaccataaccttctaaattgcattactatccattcattaa
gi|13 : tgGTTCGT---AACT----TTACAGTAGAATAAACT-------AAACTTGTTTTTTTTACTATATCTGC--GTGGTAT--GCACTTACAAT-AATC-AAAAAGA----AAAAAAA-AA-GAATAAAAGGA-AACTTATT---------CATCAACCGCTGAAATGTAAAAGTCCTTGTGTTATTTG---TATTCAtttattttttaaaactgtaatgat
gi|15 : TAAGACCAATACGTTTCAGCGTTGGATGATTCACTATGATTAACATTAT------AGATT
gi|16 : TAGAACCACTACTTTTCAGCGGGGGATGATTCATAAGAGTCAATGTTAC------AGATacatgttctttg
gi|17 : gcacgT-------TCAGATGGTGAG--CCTGATGTTA--TG---TATTCATTAGGATTCCTGTCGATTGG
gi|2 : CTATGACTTTTATGCTCCTGCGGTGG-------ATAAGGATTATTTTTTCTT----TTTTTTTTTGCGTAAGCTAAGATTA-CCTTGCAACAGAGTCTTCGACA----CATAATAAGCTTCTG-AAATAATATTGAAATC---TTGCTA---CTTTACC-------GTATTCGTATGCACT-----TAGAcaa
gi|2 : TCTTGCTACTTTACCGTA--TTCGTAT--GCACTTAGACT-TATC-A-----A----AACAAAA-AC-GTATACAAAGA-TACAGAGT---------CGT-------TAAAATGACAAA--CTTGATGTTA--TG---CATGCATAAGAGTTATTGTT-----GAATAT-----AAATAT----------------GCAATCACAGTTTAATTGAGTAAAGCGGTTTTGT---AT-ATT-TTATTTAGTTTCAC--------GCTGTCACACTGGTAGACAGAAT-TAAACTTTTATAGCACAGTACATATCTCCTTTcttatcaaaacaaaaacgtatacaaagatacagagtcgttaaaatgacaaacttgatgttatgcatgcataagagttattgttgaatataaatatgcaatcacagtttaattgagtaaagcggttttgtatattttatttagtttcacgctgtcacactggtagacagaattaaacttttatagcacagtacatatctccttttaaacgtttttgataagtttgtctattcaaaatttttg
gi|3 : ctatgacttttatgctcctgcggtggataaggattattttttctttttttttttgcgtaagctaagattaccttgcaacagagtcttcgacacataataagcttctgaaataatattgaaaGAATTATTTCTGCTACTATATCAGCATTTGGAAT--ATACTTGGAATTAG-C-A-----A----CACAAAA-CA-AGATAAAAAGAATACAGATTATTCGGATTCCT-------TGAGATGCGGAA--C------------A---CATTCATTAGGATTACTGCCTATTGGAATATAATGAAAATATTGCCC--CGA------GCA-TCACAATATTATAGAATAACATTGTGTTAT---AT-GTT-TTA-TTGGTTACAT--------ACGGCCACACTGGTAGACA-AATGT-ACCCTTCACAGCAGAT----T-TTTCCTTTtaaacgtttttgataagtttgtctattcaaaatttttg
gi|4 : TGTTTGT---CACT----ATGTAGTAGAATAAC-T-------AGGCT-ATTTTTGTTACAGTATCAGC--TTGGTATATGCACTGAGAAT-GA-T-A-----A----AAACAAA-CC-GTATAAAAGGA-TTTAGATT---------CTT-------TGAGATGCCAAA--CCTGATGTTA--TG---CATTCATTACAATTATTGTCAATTGGAATACCATG------------------------------CAATATTATCGAGTATCATGATATTGT---AT-ACT-TTA-TTGGTTACAT--------GCAGTCACAATGGTAAAGAGAAT-T-ACCCTTCACAGCACAC----TATCTCTTTtaaaccttttttccctaaaataatagtattaaaaaactgaattttgattattcttatcactacaaaattaatttataaagatatatt
gi|5 : ttTATTGAAATT---TTGAAA---TTATATTAACTGTAATGTTCGT---CATTTATTATAAAGATGATTAACCTTAGTGCTAGATTTATTTTTGTTACTAAATCAGC--TTGGTAC--ACACATAGAAT-AATC-A-----A----AACAAAA-TT-GTATTAAA-GA-TACAGATT---------TAT-------CAAGATGCTGAA--CCTGATGTTG--CG---CATTCATTAGGATTATTGTCAATTGGAATATGATGAAAATATT--TC--CACACGTATGCA-TCATGATATTATTGAATAACGTGATTTTGTTTCATCATCATTA-TCAGCAGCAGCAGCAGCAGCGGTCACACTGATAGAAA-AAT-T-ACCTTTCACAGTACAG----TAcaaacaattttgataattttctgttaatacaaatgttgatcttcatcaataaacattcaattgtaataata
gi|6 : GGACTACTACGTTTCAGCTGTGGCTGATTCATAAGGAATAATGTTAC------AGATTCTTTGCGTAAATTGAAATCA-CCTTTCAG-------TTTGAAATCATCTT--TGAGTTTCGG--AAAAAT-CTGAAATAATTTTGCAATTGTTTTATCTA---TACTGTTCGT---AACT----ATATAGTAGAATAACAT-------AATCTTTTTTTT----CTATATCTGT--GTATTAT--GCACCTAGGAT-AA-CTA-----A----AAC---A-CATGTAAAAAATTA-TACAAATG---------TTT-------TGAGAT-TCAAA--CCTGATGTTT--TG---CA
gi|7 : ctgttTAAGACTACTACATCTCAGCGGCGGGT---TCATTAGGATTAATATTACTGTAACATATTGTTTACGTAAATTGATATCAACAT-GCTATAGGTTCTTTAAAA----CTTAATGCGTTTCTGACAAAAAAATTGAAATA---TTGAAA---TGTAATTAACTGTTATGATTAC---CGCT----ATAGTGTAGAATAACTT-------ACACTTTTTTTTGTTATTATATCAGC--TTGGTAT--AAATTTAGAAT-AA-T-A-------------AAAA-GA-GTATAAAAGG--TACAAATT---------GTT-------Tat
gi|8 : ctgTTGT---AT-ATT-TTA-TTGATAACAT--------GCGGTCACGCTGATACAAACAA--T-ACCATTCACAGCACAG----TATCTCCTTT
gi|9 : tC--TTGGCAT--ACACTTA-AAT-AA-T-A-----ATCTAAACCAAA-AA-GTGTAGAAGGA-TACAGATT---------CTT-------TGAGATGCCAAA--CATGATGTTA--T----CATTTATTAGGATTTTTGCCGGTTCGAATGAAATGAAAATATTGCCCAACG-------CC--GCACACTATTATTGAATAACGTGACATTGT---AT-ATT-TCA-TTGGTGATAT--------GCGATCAGAATGGCAGACAATAT-T-ACTCTTTACAGCACAG----taaacgtttttaataattttatgtacttgaaatgtttgatggaaaaggggtcaccagaatagattattcttttcacaacaaatttgtatttcctaatgatatatttaatatcattagaaattgacatacaccttcaaaatagcattgacgtgcgttcattaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): TATTTCCAAACCATCAGTTAAAAAAGAGCGGCTTTGTGTTTATTCATCAGGATCATCATCAGCAGCAGCAGCAGCAGC