lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 111 1 44444444444444444444444444444444444444444 111111111 11111111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 111 1111 1111 1111 2222222222222222
lowQualScore : 5 5 4 999 3 888888 44 44 3 3 2 5 77777 99999999999999999999999999999999999999999 333333333 3 88888888 2 777 6 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 0 6 444 2222 2222 3 0000 3333333333333333 4
lowQualScore : . . . ... . ...... .. .. . . . . ..... ......................................... ......... . ........ . ... . ........................................................................................................................................... . . . ... .... .... . .... ................ .
lowQualScore : 2 0 0 999 6 888888 22 22 2 1 3 0 11111 44444444444444444444444444444444444444444 333333333 1 99999999 9 999 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 000 1111 1111 6 6666 8888888888888888 0
consensus : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC-AA--TACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTANACACTTAAACATATTCAACATACCATG-----GTATAAGTCTATAGGTGTATGT-N---TA-TATATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACATTTGTTATATGATG----TA--TATATATA-A---TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCC-AGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGC----TATAT-------ATATNTATGTA
Reference ( gi|1 ) : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCCGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC-AT--TACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCAATATA-TGAGCATTCTAGATTGACGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGGTGTATGT-T---TA-TAAATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACATTTGTTATATGATG----TA--TATATATA-A---TATAACTTCATGTTCCATAATTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCCC-AGAATGATGTAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGC----TTTAT-------ATATTTATGTA
gi|6 : CAAAGTATAATATATTTAAACAAAGATTAAAA-AGTCAGAGCCTGAGATAACACAGTTTAAAAAATACATTAGGACAC-AA--TACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAT--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTATAAATTGATGTTAACACTTTAACATATTCAACACACAATA-----AGATAAGTCTATAGTTGTATGT-A---TA-TATATA----------------------T----TATGTATACGTGT---------GTATGTTTACAG-ATGTACACATTTGTTATACGATG----TAATTATATATA-A---TATAACTTCATGTTCCATAAGTTTCT
gi|19 : CAAAATATTTTGTATTTAAACAGAGATTAAAAGATTCAGTGCCTGAGATAACACAGTTCAAAATGTGCATTAGGATACAATAATATAAC-ATTGAAAGATA------TATCGTTCAGAAAAACTTCGACCTACAAAAC--TTTAAAA--atgaaaaccattaaca
gi|8 : AAAACATTATATTTCTAAACAAAGACTAAAAAACTCGGAACCAGAGCTAACACAGTTCAAAACAAAAATTAAGTTAT-AA--TACAGC-ATAGGAAGATG------TATCGCTCAGAAAAACTTGGAAATTCAGAAA--TTTGAAA--AAATATGGACTCCATATC-AGAACATTTTGGATTGACTTATACAATTAAACATATTCAAAATACCATG-----ATATAGATATGAATGTATATGT-G---TG-TG-------------------------------TATGTATGTAT
gi|17 : AAAGTATTATATATTTAAACAAAGGTTAAAAGATTTAGAGCCTGAGATAACACAGTTCAAGAAATACATTAGTACAC-AA--TACAAC-ATAGAAAGATG------TATCGCTCAGAAAAAATT-----TAAAAAAA---TCGAAA--ACATGTGGACTCCATTTA-TGAGCATTaccatactatagtttcatgttcaatagtaaatgttaagattatattaaaaccatg
gi|9 : AGTATTATATATTTAATCAAAGATTAAAGTATTCAGAGCCTAAGATAACACTGTTCAAAAAATACATTAGAACAC-AA--TGCAAC-ATATGAAGATGACAATGTATCGCTCAGAAAAACTAAGAAGTACAAAAAAATTT-AAA--TCATGTGAACTCAATATA-TGAGCATTCTAGAGTGATGTATACACTTAACCACATTCAACATACCATG-----ATATAAGTCTATAGGT------------------------------------------------ATGTATGTATAT---------ATATAT---CAT-ATGT---------TTACAT-ATG----CA--TATATATT-A---TTTA
gi|10 : tAAAGATTCAGAGCCTGAAATAACACAGATCGAAAAATACATCAGAACAC-AA--TACAAC-ATAGGAAGACG------TATCGCTCAGAAAAACTTAGAAGGACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTATACACTTTAAGATAATCAACATACCATG-----GTATAAGTCTATAGGTGCATGT-A---TA-TATATA----------------------T----TACATATGTATGT---------GTATGTTTACAG-ATGTACACATTTGTTATATAATG----TA--TATATAT--A---TATAAtgatata
gi|2 : TTCAGAGCCTGAGATAACACAATTCACAAAATACATTAGGACAC-AA--TACAAC-ATAGGAAGATG------TATTGCTCAGACAAACTTAGAAGTACAAAAA--T-CGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTTTAAGTCTATAGGTGTATGTATATATA-TATATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACATTTGTTATATGATG----CA--TATATATA-A---TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATAAATGAAAAATAACAGTTCGC----tata
gi|3 : GAGCCTGAGATAACGCAGTTAAAAAAATACATTAGGACAC-AA--TACAAC-ATAGGAATACG------TATCGCCCAGAAAAACTTAGAAGTACAACAA--TTCAAAA--ACATGTGGACTCCATATAACGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAGGTCTATAGGTGTATAT-A---TT-TATATA----------------------T----TATATATGTATGT---------GTATGTTAACAG-ATGTACACATTTGTTATATGATG--------TATGTATA-A---TATAACTTCATGTTCTATAA
gi|11 : aTTAGGAAAC-AA--TACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATTCGGACTCCATATA-TGAGTATTCTAGATTGACATAAACACTTAAACTTATTCAACATACCATA-----GTTTGAGTCTATAGGTGTATGT-C---TA-TATATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACATTTGTTATGTGATG----TA--TATATATATAT--TATAACTTCATGTTCCATAATTTTCTgtttttttgaaaaccataaacactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaaggaatgatatattatatcctttatgaataacaaaagatatagacaaatttgtgcagaatgttttcatgaatcatttaaaacgtttcacaatatatatat
gi|12 : GGACAC-AA--TACAAC-ATAACAATATG------TATCGCTCAGAAAAACTTAGAAGTACACAA---TTCGAAA--ACATGTGGACTACATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGGTGTATGT-T---AA-TATATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-AAGAACACA-TTGTTATATGATG--------TATATATA-A---TATAACTTCCTGTTatgaaaaccatt
gi|15 : ACAGCTATAGGAAGATG------TATCGCTCTGTAAAACTTAGAAAATCAGAAA--TTTGAAAGAAAATATAGACTCTATATA-AGAGCAGTTTGAATTGATTTATATATTTAAACAAATTCAACATATCATG-----ACGTGGATTTATATTTACCTGT-TTG-TA-TAAA-A----------------------C----TATA
gi|13 : GAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGACCATTCTAGATTGATGTATACACTTAAACATATTCAACATACCATG-----GTATAAGTCTATCGGTGTAT-----------------------------------------------TATGTATGT---------GTATGTTTACAG-ATGTACACATTTGTTATATGATG--------TATATGTG-A---TATAACTTCATGTTCCATAAgagtttcattttccacaataaatgttaagattatattacaata
gi|16 : GAAGATG------TATCGCTCAGAAAAACTTGGAACTTCAAAAA--TTTGAAA--AAATATGGACTCCCTATT-AGAACATTTTGGATTGACTTATACCATTAAACATATCCAAAATCGCATATATATGTATAATACTATAGTTTCATGT-TCCATAGTAAATG----------------------T----TAatttttatgaaaatcat
gi|14 : ATATA-TGAGCATTCTGGATTGATGTAAACACTTAAACATGTTCAACATACCAAA-----GTATAAGTCTATAGGTGNNNNN-N---NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNTT----TATGCACGTAAGT---------GTATATTTACAG-ATGTACACATTTGTTATATGATG----TA--TATATATA-A---TATAACTTCATGTTTCATAAagatcatattaa
gi|22 : TTCTGGATTGATTTATACAC-----CATATTCAACATACCATG-----GTGTAAATGTATAgattttatgaaaaccataaa
gi|4 : ATA-----GTATAAGTCTATAGGNNNNNNN-N---NN-NNNNNN----------------------N----NNNNNNNNNNNNNNNNNNNNNNGTGTGTTTACAG-ATGTACACATTTGTTATATGATGTATATA--TATATATA-A---TATAACTTCATGTTCCATAATTTTttccatagattatatta
gi|18 : AGTCT-TAATTTTATAT-T---T--TATATA----------------------TAAAGTATATATGTATGT---------GTATGTTTACAG-ATGTACACAGTTGTTGTATGATG--------TATATATA-A---TATAAATTCATGTTATATAAatatgaaaaccatttacactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagattttcccccagaatgctatatatcctttatgagtaacaaagaatacaaagacaaatttgtgcagaatgtttttataaatcatttaaaacagttcgctctatata
gi|5 : GGTGTATGT-A---TA-TATATA----------------------T----TATACATGTATGT---------TTATGTTTACAG-ATGCACACATTTGTTATATGATG----TA--TACACAAA-A---TATAACTTCATGTTCCATAATTTTCTatttttatcaaaacaatcaacactaactttcgatctgat
gi|7 : ACAGGATGTACACATTTGTTATATGATGTA--TA--TATATATA-A---TATAACTTCATGTTCCATAATTTTTTatgaaaaccataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcccccagaatgatatatatcctttaagaataacaaaggataaaaagacaaatttgtgcagaatgttttcatgaatcatttaaaacagttcgctatatatatttatgtata
gi|16 : ATA----TA--TATGTATA-ATACTATAGTTTCATGTTCCATAGTatgaaaaccattaacactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagatttttccccagaatgatatatatcctttatgaattacaaaggatacaaagacaaatttgtgcagaatgtttttatgaatcatttaaaacagttcgctatatatatttatgta
gi|7 : gaagatgtatcgctcagaaaaacttggaacttcaaaaatttgaaaaaatatggactccctattagaacattttggattgacttataccattaaacatatccaaaatcgcTTTTTCCCC-AGAATGATATAT---ATCCTTTATGAATTACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGC----TATAT-------ATATTTATGTAaaatgttaagatcatattaa
gi|5 : acaggatgtacacatttgttatatgatgtatatatatataatataacttcatgttccataattttttatgaaaaccattaacactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagaTTTTCCCCC-AGAATGATATAT---ATCCTTTAAGAATAACAAAGGATAAAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGC----TATAT-------ATATTTATGTA
gi|4 : ggtgtatgtatatatatattatacatgtatgtttatgtttacagatgcacacatttgttatatgatgtatacacaaaatataacttcatgttccataattttctatgaaaaccataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTTTCCCCC-AGAATGCTATAT---ATCCTTTATGAGTAACAAAGAATACAAAGACAAATTTGT----GCAGAATG----TTTTTATAAATCATTTAA----AACAGTTCGC----TCTAT-------ATAta
gi|3 : atagtataagtctataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgtttacagatgtacacatttgttatatgatgtatatatatatataatataacttcatgttccataattttatatgaaaaccatttacactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagaGAATGATATATTATATCCTTTATGAATAACAAAAGATATA--GACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACGTTTCAC----AATAT-------ATAT
gi|20 : agagcctgagataacgcagttaaaaaaatacattaggacacaatacaacataggaatacgtatcgcccagaaaaacttagaagtacaacaattcaaaaacatgtggactccatataacgagcattctagattgatgtaaacacttaaacatattcaacataccatagtataggtctataggtgtatatatttatatattatatatgtatgtgtatgttaacagatgtacacatttgttatatgatgtatgtataatataacttcatgttctataagtttttttgaaaaccataaacactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaagATATAAATACGAATATGTCAGTGCAGAATGACGGTTTTAATGAACCATCTAA----AACAGTTCGT----AATATTAAAAAAATATATATGTAat
gi|24 : aATTTAT----GCAGAATG----TTTTCATGAATCATTAAA----AACAt
gi|23 : TTTCATGAATCATTTAA----AACAGTTCGCAATATTCAG-------ATATATATGT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|21 ): ATATACTTTATTTTTAAATGTAAAAGATGATGTATATTAATTAAACAAATCAACAACAACGTAAACCAATTACAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222 111111111 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 1111 3333333
lowQualScore : 3 666 3 888888 33 33 2 1 66666 33 1 5555 444 555555555555555555555555555 222222222 2 2 6666 0000 2 2 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 0000 0000 9999 2 0000000 1
lowQualScore : . ... . ...... .. .. . . ..... .. . .... ... ........................... ......... . . .... .... . . . . ............................................................................................................................. ... .... .... .... . ....... .
lowQualScore : 0 444 3 222222 99 99 9 0 77777 22 9 3333 444 333333333333333333333333333 333333333 9 9 1111 0000 9 9 3 8 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 777 6666 6666 4444 1 7777777 0
consensus : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGACGTANACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATNAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCNATAT-------ATATNTATGTA
Reference ( family-2128 ) : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTANACACTTAAACATATTCAACATACCATG-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCTATAT-------ATATNTATGTA
gi|1 : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCCGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---ATTACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCAATATA-TGAGCATTCTAGATTGACGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTTTA----TA---AATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTCTCTNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCCCAGAATGATGTAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGCTTTAT-------ATATTTATGTA
gi|10 : AAAGATTCAGAGCCTGAAATAACACAGATCGAAAAATACATCAGAACAC---AATACAAC-ATAGGAAGACG------TATCGCTCAGAAAAACTTAGAAGGACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTATACACTTTAAGATAATCAACATACCATG-----GTATAAGTCTATAGG--TGCATGTATA----TA---TATA----------------------T----TACATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATAATGTA--TA----TATAT--A-TATAA
gi|11 : TTAGGAAAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATTCGGACTCCATATA-TGAGTATTCTAGATTGACATAAACACTTAAACTTATTCAACATACCATA-----GTTTGAGTCTATAGG--TGTATGTCTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATGTGATGTA--TA----TATATATATTATAACTTCATGTTCCATAATTTTCTATGAAAACCATtata
gi|12 : GGACAC---AATACAAC-ATAACAATATG------TATCGCTCAGAAAAACTTAGAAGTACACAA---TTCGAAA--ACATGTGGACTACATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTTAA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-AAGAACACA--TTGTTATATGATG----TA----TATATA-A-TATAACTTCCTGTTt
gi|13 : GAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGACCATTCTAGATTGATGTATACACTTAAACATATTCAACATACCATG-----GTATAAGTCTATCGG--TGTAT-------------------------------------------------TATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATG----TA----TATGTG-A-TATAACTTCATGTTCCATAAATTTTTATGAAAATCAT
gi|14 : ATATA-TGAGCATTCTGGATTGATGTAAACACTTAAACATGTTCAACATACCAAA-----GTATAAGTCTATAGG--TGNNNNNNNN----NN---NNNNNNNNNNNNNNNNNNNNNNNNNTT----TATGCACGTAAGT---------GTATATTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTTCATAAGATTTTATGAAAACCATAAA
gi|15 : ACAGCTATAGGAAGATG------TATCGCTCTGTAAAACTTAGAAAATCAGAAA--TTTGAAAGAAAATATAGACTCTATATA-AGAGCAGTTTGAATTGATTTATATATTTAAACAAATTCAACATATCATG-----ACGTGGATTTATATT--TACCTGTTTG----TA---TA
gi|16 : GAAGATG------TATCGCTCAGAAAAACTTGGAACTTCAAAAA--TTTGAAA--AAATATGGACTCCCTATT-AGAACATTTTGGATTGACTTATACCATTAAACATATCCAAAATCGCATATATATGTATAATACTATAGT--TTCATGTaaactatagagtttcattttccacaataaatgttaagattatattacaata
gi|16 : TATAT-ATGTA--TA-------ATA-C-TATAGTTTCATGTTCCATAGTtccatagtaaatgttaagatcatattaa
gi|17 : gaagatgtatcgctcagaaaaacttggaacttcaaaaatttgaaaaaatatggactccctattagaacattttggattgacttataccattaaacatatccaaaatcgcaAAAGTATTATATATTTAAACAAAGGTTAAAAGATTTAGAGCCTGAGATAACACAGTTCAAGAAATACATTAGTACAC---AATACAAC-ATAGAAAGATG------TATCGCTCAGAAAAAATT-----TAAAAAAA---TCGAAA--ACATGTGGACTCCATTTA-TGAGCATTaaatgttaagatcatattaa
gi|18 : AGTCT-TAAT--TTTATATTT-----TA---TATA----------------------TAAAGTATATATGTATGT---------GTATGTTTACAG-ATGTACACAG-TTGTTGTATGATG----TA----TATATA-A-TATAAATTCATGTTATATAAATTTTTATCAAAACAATCAAC-
gi|19 : CAAAATATTTTGTATTTAAACAGAGATTAAAAGATTCAGTGCCTGAGATAACACAGTTCAAAATGTGCATTAGGATACAATAATATAAC-ATTGAAAGATA------TATCGTTCAGAAAAACTTCGACCTACAAAAC--TTTAAAA--actaactttcgatctgat
gi|2 : TTCAGAGCCTGAGATAACACAATTCACAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATTGCTCAGACAAACTTAGAAGTACAAAAA--T-CGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTTTAAGTCTATAGG--TGTATGTATATATATA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGCA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATAAATGAAAAATAACAGTTCGC
gi|20 : ATATAAATACGAATATGTCAGTGCAGAATGACGGTTTTAATGAACCATCTAA----AACAGTTCGTAATATTAAAAAAATATATATGTA
gi|22 : aTTCTGGATTGATTTATACAC-----CATATTCAACATACCATG-----GTGTAAAT------G--TATAT-TCCA----TAGATTATA----------------------T----TAt
gi|23 : TTTCATGAATCATTTAA----AACAGTTCGCAATATTCAG---ATATATATGT
gi|24 : ATTTAT----GCAGAATG----TTTTCATGAATCATTAAA----AACAgtgt
gi|3 : AGAGCCTGAGATAACGCAGTTAAAAAAATACATTAGGACAC---AATACAAC-ATAGGAATACG------TATCGCCCAGAAAAACTTAGAAGTACAACAA--TTCAAAA--ACATGTGGACTCCATATAACGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAGGTCTATAGG--TGTATATATT----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTAACAG-ATGTACACAT-TTGTTATATGATG----TA----TGTATA-A-TATAACTTCATGTTCTATAAGTTTTTTTGAAAACCATAAAC-
gi|3 : GAATGATATATTATATCCTTTATGAATAACAAAAGATATA--GACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACGTTTCACAATAT-------ATATAactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaaggaatgatatattatatcctttatgaataacaaaagatatagacaaatttgtgcagaatgttttcatgaatcatttaaaacgtttcacaatatatatat
gi|4 : agagcctgagataacgcagttaaaaaaatacattaggacacaatacaacataggaatacgtatcgcccagaaaaacttagaagtacaacaattcaaaaacatgtggactccatataacgagcattctagattgatgtaaacacttaaacatattcaacataccatagtataggtctataggtgtatatatttatatattatatatgtatgtgtatgttaacagatgtacacatttgttatatgatgtatgtataatataacttcatgttctataagtttttttgaaaaccataaacactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaagATA-----GTATAAGTCTATAGG--NNNNNNNNNN----NN---NNNN----------------------N----NNNNNNNNNNNNNNNNNNNNNNGTGTGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TATATATATATA-A-TATAACTTCATGTTCCATAATTTTATATGAAAACCAT
gi|4 : TTTTCCCCCAGAATGCTATAT---ATCCTTTATGAGTAACAAAGAATACAAAGACAAATTTGT----GCAGAATG----TTTTTATAAATCATTTAA----AACAGTTCGCTCTAT-------ATAttacactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagattttcccccagaatgctatatatcctttatgagtaacaaagaatacaaagacaaatttgtgcagaatgtttttataaatcatttaaaacagttcgctctatata
gi|5 : atagtataagtctataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgtttacagatgtacacatttgttatatgatgtatatatatatataatataacttcatgttccataattttatatgaaaaccatttacactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagaGG--TGTATGTATA----TA---TATA----------------------T----TATACATGTATGT---------TTATGTTTACAG-ATGCACACAT-TTGTTATATGATGTA--TA----CACAAA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAAC-
gi|5 : TTTTCCCCCAGAATGATATAT---ATCCTTTAAGAATAACAAAGGATAAAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCTATAT-------ATATTTATGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcccccagaatgatatatatcctttaagaataacaaaggataaaaagacaaatttgtgcagaatgttttcatgaatcatttaaaacagttcgctatatatatttatgtata
gi|6 : ggtgtatgtatatatatattatacatgtatgtttatgtttacagatgcacacatttgttatatgatgtatacacaaaatataacttcatgttccataattttctatgaaaaccataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAAGTATAATATATTTAAACAAAGATTAAAA-AGTCAGAGCCTGAGATAACACAGTTTAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAT--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTATAAATTGATGTTAACACTTTAACATATTCAACACACAATA-----AGATAAGTCTATAGT--TGTATGTATA----TA---TATA----------------------T----TATGTATACGTGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATACGATGTAATTA----TATATA-A-TATAACTTCATGTTCCATAAGTTTCTATGAAAACCATTAAC-ta
gi|7 : ACAGGATGTACACAT-TTGTTATATGATGTA--TATA--TATATA-A-TATAACTTCATGTTCCATAATTTTTTATGAAAACCATTAAC-a
gi|7 : TTTTTCCCCAGAATGATATAT---ATCCTTTATGAATTACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGCTATAT-------ATATTTATGTAactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagatttttccccagaatgatatatatcctttatgaattacaaaggatacaaagacaaatttgtgcagaatgtttttatgaatcatttaaaacagttcgctatatatatttatgta
gi|8 : acaggatgtacacatttgttatatgatgtatatatatataatataacttcatgttccataattttttatgaaaaccattaacactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagaAAAACATTATATTTCTAAACAAAGACTAAAAAACTCGGAACCAGAGCTAACACAGTTCAAAACAAAAATTAAGTTAT---AATACAGC-ATAGGAAGATG------TATCGCTCAGAAAAACTTGGAAATTCAGAAA--TTTGAAA--AAATATGGACTCCATATC-AGAACATTTTGGATTGACTTATACAATTAAACATATTCAAAATACCATG-----ATATAG----ATA----TGAATGTATA----TG---TGTG----------------------TG---TATGTATGTAT
gi|9 : AGTATTATATATTTAATCAAAGATTAAAGTATTCAGAGCCTAAGATAACACTGTTCAAAAAATACATTAGAACAC---AATGCAAC-ATATGAAGATGACAATGTATCGCTCAGAAAAACTAAGAAGTACAAAAAAATTT-AAA--TCATGTGAACTCAATATA-TGAGCATTCTAGAGTGATGTATACACTTAACCACATTCAACATACCATG-----ATATAAGTCTATAGGTATGTATGTATA----TA---TATA----------------------T----CA---------------------TATGTTTACAT-ATGCATATATATTATT-TATGATATA--accatactatagtttcatgttcaatagtaaatgttaagattatattaaaaccatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATATACTTTATTTTTAAATGTAAAAGATGATGTATATTAATTAAACAAATCAACAACAACGTAAACCAATTACAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222 111111111 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 1111 3333333
lowQualScore : 3 666 3 888888 33 33 2 1 1 66666 33 1 5555 444 555555555555555555555555555 222222222 2 2 6666 0000 2 2 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 0000 0000 9999 1 0000000 1
lowQualScore : . ... . ...... .. .. . . . ..... .. . .... ... ........................... ......... . . .... .... . . . . ............................................................................................................................. ... .... .... .... . ....... .
lowQualScore : 0 444 3 222222 99 99 9 4 0 77777 22 9 3333 444 333333333333333333333333333 333333333 9 9 1111 0000 9 9 3 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 6666 6666 4444 0 7777777 0
consensus : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGACGTANACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATNAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCNATAT-------ATATNTATGTA
Reference ( family-2128 ) : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGACGTANACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATNAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCNATAT-------ATATNTATGTA
gi|1 : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCCGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---ATTACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCAATATA-TGAGCATTCTAGATTGACGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTTTA----TA---AATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTCTCTNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCCCAGAATGATGTAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGCTTTAT-------ATATTTATGTA
gi|10 : AAAGATTCAGAGCCTGAAATAACACAGATCGAAAAATACATCAGAACAC---AATACAAC-ATAGGAAGACG------TATCGCTCAGAAAAACTTAGAAGGACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTATACACTTTAAGATAATCAACATACCATG-----GTATAAGTCTATAGG--TGCATGTATA----TA---TATA----------------------T----TACATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATAATGTA--TA----TATAT--A-TATAA
gi|11 : TTAGGAAAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATTCGGACTCCATATA-TGAGTATTCTAGATTGACATAAACACTTAAACTTATTCAACATACCATA-----GTTTGAGTCTATAGG--TGTATGTCTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATGTGATGTA--TA----TATATATATTATAACTTCATGTTCCATAATTTTCTATGAAAACCATtata
gi|12 : GGACAC---AATACAAC-ATAACAATATG------TATCGCTCAGAAAAACTTAGAAGTACACAA---TTCGAAA--ACATGTGGACTACATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTTAA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-AAGAACACA--TTGTTATATGATG----TA----TATATA-A-TATAACTTCCTGTTt
gi|13 : GAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGACCATTCTAGATTGATGTATACACTTAAACATATTCAACATACCATG-----GTATAAGTCTATCGG--TGTAT-------------------------------------------------TATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATG----TA----TATGTG-A-TATAACTTCATGTTCCATAAATTTTTATGAAAATCAT
gi|14 : ATATA-TGAGCATTCTGGATTGATGTAAACACTTAAACATGTTCAACATACCAAA-----GTATAAGTCTATAGG--TGNNNNNNNN----NN---NNNNNNNNNNNNNNNNNNNNNNNNNTT----TATGCACGTAAGT---------GTATATTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTTCATAAGATTTTATGAAAACCATAAA
gi|15 : ACAGCTATAGGAAGATG------TATCGCTCTGTAAAACTTAGAAAATCAGAAA--TTTGAAAGAAAATATAGACTCTATATA-AGAGCAGTTTGAATTGATTTATATATTTAAACAAATTCAACATATCATG-----ACGTGGATTTATATT--TACCTGTTTG----TA---TA
gi|16 : GAAGATG------TATCGCTCAGAAAAACTTGGAACTTCAAAAA--TTTGAAA--AAATATGGACTCCCTATT-AGAACATTTTGGATTGACTTATACCATTAAACATATCCAAAATCGCATATATATGTATAATACTATAGT--TTCATGTaaactatagagtttcattttccacaataaatgttaagattatattacaata
gi|16 : TATAT-ATGTA--TA-------ATA-C-TATAGTTTCATGTTCCATAGTtccatagtaaatgttaagatcatattaa
gi|17 : gaagatgtatcgctcagaaaaacttggaacttcaaaaatttgaaaaaatatggactccctattagaacattttggattgacttataccattaaacatatccaaaatcgcaAAAGTATTATATATTTAAACAAAGGTTAAAAGATTTAGAGCCTGAGATAACACAGTTCAAGAAATACATTAGTACAC---AATACAAC-ATAGAAAGATG------TATCGCTCAGAAAAAATT-----TAAAAAAA---TCGAAA--ACATGTGGACTCCATTTA-TGAGCATTaaatgttaagatcatattaa
gi|18 : AGTCT-TAAT--TTTATATTT-----TA---TATA----------------------TAAAGTATATATGTATGT---------GTATGTTTACAG-ATGTACACAG-TTGTTGTATGATG----TA----TATATA-A-TATAAATTCATGTTATATAAATTTTTATCAAAACAATCAAC-
gi|19 : CAAAATATTTTGTATTTAAACAGAGATTAAAAGATTCAGTGCCTGAGATAACACAGTTCAAAATGTGCATTAGGATACAATAATATAAC-ATTGAAAGATA------TATCGTTCAGAAAAACTTCGACCTACAAAAC--TTTAAAA--actaactttcgatctgat
gi|2 : TTCAGAGCCTGAGATAACACAATTCACAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATTGCTCAGACAAACTTAGAAGTACAAAAA--T-CGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTTTAAGTCTATAGG--TGTATGTATATATATA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGCA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATAAATGAAAAATAACAGTTCGC
gi|20 : ATATAAATACGAATATGTCAGTGCAGAATGACGGTTTTAATGAACCATCTAA----AACAGTTCGTAATATTAAAAAAATATATATGTA
gi|22 : aTTCTGGATTGATTTATACAC-----CATATTCAACATACCATG-----GTGTAAAT------G--TATAT-TCCA----TAGATTATA----------------------T----TAt
gi|23 : TTTCATGAATCATTTAA----AACAGTTCGCAATATTCAG---ATATATATGT
gi|24 : ATTTAT----GCAGAATG----TTTTCATGAATCATTAAA----AACAgtgt
gi|3 : AGAGCCTGAGATAACGCAGTTAAAAAAATACATTAGGACAC---AATACAAC-ATAGGAATACG------TATCGCCCAGAAAAACTTAGAAGTACAACAA--TTCAAAA--ACATGTGGACTCCATATAACGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAGGTCTATAGG--TGTATATATT----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTAACAG-ATGTACACAT-TTGTTATATGATG----TA----TGTATA-A-TATAACTTCATGTTCTATAAGTTTTTTTGAAAACCATAAAC-
gi|3 : GAATGATATATTATATCCTTTATGAATAACAAAAGATATA--GACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACGTTTCACAATAT-------ATATAactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaaggaatgatatattatatcctttatgaataacaaaagatatagacaaatttgtgcagaatgttttcatgaatcatttaaaacgtttcacaatatatatat
gi|4 : agagcctgagataacgcagttaaaaaaatacattaggacacaatacaacataggaatacgtatcgcccagaaaaacttagaagtacaacaattcaaaaacatgtggactccatataacgagcattctagattgatgtaaacacttaaacatattcaacataccatagtataggtctataggtgtatatatttatatattatatatgtatgtgtatgttaacagatgtacacatttgttatatgatgtatgtataatataacttcatgttctataagtttttttgaaaaccataaacactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaagATA-----GTATAAGTCTATAGG--NNNNNNNNNN----NN---NNNN----------------------N----NNNNNNNNNNNNNNNNNNNNNNGTGTGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TATATATATATA-A-TATAACTTCATGTTCCATAATTTTATATGAAAACCATTTAC-
gi|4 : TTTTCCCCCAGAATGCTATAT---ATCCTTTATGAGTAACAAAGAATACAAAGACAAATTTGT----GCAGAATG----TTTTTATAAATCATTTAA----AACAGTTCGCTCTAT-------ATAactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagattttcccccagaatgctatatatcctttatgagtaacaaagaatacaaagacaaatttgtgcagaatgtttttataaatcatttaaaacagttcgctctatata
gi|5 : atagtataagtctataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgtttacagatgtacacatttgttatatgatgtatatatatatataatataacttcatgttccataattttatatgaaaaccatttacactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagaGG--TGTATGTATA----TA---TATA----------------------T----TATACATGTATGT---------TTATGTTTACAG-ATGCACACAT-TTGTTATATGATGTA--TA----CACAAA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAAC-
gi|5 : TTTTCCCCCAGAATGATATAT---ATCCTTTAAGAATAACAAAGGATAAAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCTATAT-------ATATTTATGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcccccagaatgatatatatcctttaagaataacaaaggataaaaagacaaatttgtgcagaatgttttcatgaatcatttaaaacagttcgctatatatatttatgtata
gi|6 : ggtgtatgtatatatatattatacatgtatgtttatgtttacagatgcacacatttgttatatgatgtatacacaaaatataacttcatgttccataattttctatgaaaaccataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAAGTATAATATATTTAAACAAAGATTAAAA-AGTCAGAGCCTGAGATAACACAGTTTAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAT--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTATAAATTGATGTTAACACTTTAACATATTCAACACACAATA-----AGATAAGTCTATAGT--TGTATGTATA----TA---TATA----------------------T----TATGTATACGTGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATACGATGTAATTA----TATATA-A-TATAACTTCATGTTCCATAAGTTTCTATGAAAACCATTAAC-ta
gi|7 : ACAGGATGTACACAT-TTGTTATATGATGTA--TATA--TATATA-A-TATAACTTCATGTTCCATAATTTTTTATGAAAACCATTAAC-a
gi|7 : TTTTTCCCCAGAATGATATAT---ATCCTTTATGAATTACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGCTATAT-------ATATTTATGTAactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagatttttccccagaatgatatatatcctttatgaattacaaaggatacaaagacaaatttgtgcagaatgtttttatgaatcatttaaaacagttcgctatatatatttatgta
gi|8 : acaggatgtacacatttgttatatgatgtatatatatataatataacttcatgttccataattttttatgaaaaccattaacactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagaAAAACATTATATTTCTAAACAAAGACTAAAAAACTCGGAACCAGAGCTAACACAGTTCAAAACAAAAATTAAGTTAT---AATACAGC-ATAGGAAGATG------TATCGCTCAGAAAAACTTGGAAATTCAGAAA--TTTGAAA--AAATATGGACTCCATATC-AGAACATTTTGGATTGACTTATACAATTAAACATATTCAAAATACCATG-----ATATAG----ATA----TGAATGTATA----TG---TGTG----------------------TG---TATGTATGTAT
gi|9 : AGTATTATATATTTAATCAAAGATTAAAGTATTCAGAGCCTAAGATAACACTGTTCAAAAAATACATTAGAACAC---AATGCAAC-ATATGAAGATGACAATGTATCGCTCAGAAAAACTAAGAAGTACAAAAAAATTT-AAA--TCATGTGAACTCAATATA-TGAGCATTCTAGAGTGATGTATACACTTAACCACATTCAACATACCATG-----ATATAAGTCTATAGGTATGTATGTATA----TA---TATA----------------------T----CA---------------------TATGTTTACAT-ATGCATATATATTATT-TATGATATA--accatactatagtttcatgttcaatagtaaatgttaagattatattaaaaccatg
blockSeqs : G AAT T ACAATG AA GA A T T TATAT TA A TATA GAT NNNNNNNNNNNNNNNNNNNNNTT NNNNNNNNN G A TAAT TATA T T T A NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN TAT CAGT ACGG AAAT A TAAAAAA A
blockSeqs : G . . . . . . C A . . C . . TAAAG . . . TA TA . . A C . . . . A TCAG A
blockSeqs : G . . . . . . T A . . T . . TG . . . TA . . . G A . . . . A . A
blockSeqs : A . . . . . . T T . . N . . T . . . TA . . . T A . . . . T . T
blockSeqs : T . . . . . . T A . . T . . T . . . TA . . . A T . . . . T . T
blockSeqs : . . . . . . . T T . . T . . T . . . CA . . . T A . . . T .
blockSeqs : . . . . . . C T . . A . . T . . . TA . . . G T . . .
blockSeqs : . . . . . . T A . . C . . T . . . TA . . . T T .
blockSeqs : . . . . . . T T . . A . . T . . . TA . . . T
blockSeqs : . . . . . . T A . . N . . N . . . TA . . . G
blockSeqs : . . . . . T A . . A . . T . . . . . . . T
blockSeqs : . . . . C T . . A . . T . . . . . . .
blockSeqs : . . . . T T . . A . . T . . . . . .
blockSeqs : . . A . . . .
blockSeqs : . . . .
blockSeqs : .
blockSeqCons :
originalCons : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGACGTANACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATNAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCNATAT-------ATATNTATGTA
finalCons : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGACGTANACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATNAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCNATAT-------ATATNTATGTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATATACTTTATTTTTAAATGTAAAAGATGATGTATATTAATTAAACAAATCAACAACAACGTAAACCAATTACAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222222222222222222222222222 111111111 1111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111 1111 1111 3333333
lowQualScore : 3 666 3 888888 33 33 2 1 1 66666 33 1 5555 444 555555555555555555555555555 222222222 2 2 6666 0000 2 2 1 1 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 0000 0000 9999 1 0000000 1
lowQualScore : . ... . ...... .. .. . . . ..... .. . .... ... ........................... ......... . . .... .... . . . . ............................................................................................................................. ... .... .... .... . ....... .
lowQualScore : 0 444 3 222222 99 99 9 4 0 77777 22 9 3333 444 333333333333333333333333333 333333333 9 9 1111 0000 9 9 3 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 777 6666 6666 4444 0 7777777 0
consensus : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGACGTANACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATNAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCNATAT-------ATATNTATGTA
Reference ( family-2128 ) : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCAGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGACGTANACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTNTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATNAAC-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCNATAT-------ATATNTATGTA
gi|1 : CAAAGTATTATATATTTAAACAAAGATTAAAAGATTCCGAGCCTGAGATAACACAGTTCAAAAAATACATTAGGACAC---ATTACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATGTGGACTCAATATA-TGAGCATTCTAGATTGACGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTTTA----TA---AATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTCCATAATTCTCTNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCCCCCAGAATGATGTAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGCTTTAT-------ATATTTATGTA
gi|10 : AAAGATTCAGAGCCTGAAATAACACAGATCGAAAAATACATCAGAACAC---AATACAAC-ATAGGAAGACG------TATCGCTCAGAAAAACTTAGAAGGACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTATACACTTTAAGATAATCAACATACCATG-----GTATAAGTCTATAGG--TGCATGTATA----TA---TATA----------------------T----TACATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATAATGTA--TA----TATAT--A-TATAA
gi|11 : TTAGGAAAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAA--TTCGAAA--ACATTCGGACTCCATATA-TGAGTATTCTAGATTGACATAAACACTTAAACTTATTCAACATACCATA-----GTTTGAGTCTATAGG--TGTATGTCTA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATGTGATGTA--TA----TATATATATTATAACTTCATGTTCCATAATTTTCTATGAAAACCATtata
gi|12 : GGACAC---AATACAAC-ATAACAATATG------TATCGCTCAGAAAAACTTAGAAGTACACAA---TTCGAAA--ACATGTGGACTACATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAAGTCTATAGG--TGTATGTTAA----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-AAGAACACA--TTGTTATATGATG----TA----TATATA-A-TATAACTTCCTGTTt
gi|13 : GAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAACAA--TTCGAAA--ACATGTGGACTCCATATA-TGACCATTCTAGATTGATGTATACACTTAAACATATTCAACATACCATG-----GTATAAGTCTATCGG--TGTAT-------------------------------------------------TATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATG----TA----TATGTG-A-TATAACTTCATGTTCCATAAATTTTTATGAAAATCAT
gi|14 : ATATA-TGAGCATTCTGGATTGATGTAAACACTTAAACATGTTCAACATACCAAA-----GTATAAGTCTATAGG--TGNNNNNNNN----NN---NNNNNNNNNNNNNNNNNNNNNNNNNTT----TATGCACGTAAGT---------GTATATTTACAG-ATGTACACAT-TTGTTATATGATGTA--TA----TATATA-A-TATAACTTCATGTTTCATAAGATTTTATGAAAACCATAAA
gi|15 : ACAGCTATAGGAAGATG------TATCGCTCTGTAAAACTTAGAAAATCAGAAA--TTTGAAAGAAAATATAGACTCTATATA-AGAGCAGTTTGAATTGATTTATATATTTAAACAAATTCAACATATCATG-----ACGTGGATTTATATT--TACCTGTTTG----TA---TA
gi|16 : GAAGATG------TATCGCTCAGAAAAACTTGGAACTTCAAAAA--TTTGAAA--AAATATGGACTCCCTATT-AGAACATTTTGGATTGACTTATACCATTAAACATATCCAAAATCGCATATATATGTATAATACTATAGT--TTCATGTaaactatagagtttcattttccacaataaatgttaagattatattacaata
gi|16 : TATAT-ATGTA--TA-------ATA-C-TATAGTTTCATGTTCCATAGTtccatagtaaatgttaagatcatattaa
gi|17 : gaagatgtatcgctcagaaaaacttggaacttcaaaaatttgaaaaaatatggactccctattagaacattttggattgacttataccattaaacatatccaaaatcgcaAAAGTATTATATATTTAAACAAAGGTTAAAAGATTTAGAGCCTGAGATAACACAGTTCAAGAAATACATTAGTACAC---AATACAAC-ATAGAAAGATG------TATCGCTCAGAAAAAATT-----TAAAAAAA---TCGAAA--ACATGTGGACTCCATTTA-TGAGCATTaaatgttaagatcatattaa
gi|18 : AGTCT-TAAT--TTTATATTT-----TA---TATA----------------------TAAAGTATATATGTATGT---------GTATGTTTACAG-ATGTACACAG-TTGTTGTATGATG----TA----TATATA-A-TATAAATTCATGTTATATAAATTTTTATCAAAACAATCAAC-
gi|19 : CAAAATATTTTGTATTTAAACAGAGATTAAAAGATTCAGTGCCTGAGATAACACAGTTCAAAATGTGCATTAGGATACAATAATATAAC-ATTGAAAGATA------TATCGTTCAGAAAAACTTCGACCTACAAAAC--TTTAAAA--actaactttcgatctgat
gi|2 : TTCAGAGCCTGAGATAACACAATTCACAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATTGCTCAGACAAACTTAGAAGTACAAAAA--T-CGAAA--ACATGTGGACTCCATATA-TGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTTTAAGTCTATAGG--TGTATGTATATATATA---TATA----------------------T----TATATATGTATGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATATGATGCA--TA----TATATA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCAGAATGATATAT---ATCCTTTATGAATAACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATAAATGAAAAATAACAGTTCGC
gi|20 : ATATAAATACGAATATGTCAGTGCAGAATGACGGTTTTAATGAACCATCTAA----AACAGTTCGTAATATTAAAAAAATATATATGTA
gi|22 : aTTCTGGATTGATTTATACAC-----CATATTCAACATACCATG-----GTGTAAAT------G--TATAT-TCCA----TAGATTATA----------------------T----TAt
gi|23 : TTTCATGAATCATTTAA----AACAGTTCGCAATATTCAG---ATATATATGT
gi|24 : ATTTAT----GCAGAATG----TTTTCATGAATCATTAAA----AACAgtgt
gi|3 : AGAGCCTGAGATAACGCAGTTAAAAAAATACATTAGGACAC---AATACAAC-ATAGGAATACG------TATCGCCCAGAAAAACTTAGAAGTACAACAA--TTCAAAA--ACATGTGGACTCCATATAACGAGCATTCTAGATTGATGTAAACACTTAAACATATTCAACATACCATA-----GTATAGGTCTATAGG--TGTATATATT----TA---TATA----------------------T----TATATATGTATGT---------GTATGTTAACAG-ATGTACACAT-TTGTTATATGATG----TA----TGTATA-A-TATAACTTCATGTTCTATAAGTTTTTTTGAAAACCATAAAC-
gi|3 : GAATGATATATTATATCCTTTATGAATAACAAAAGATATA--GACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACGTTTCACAATAT-------ATATAactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaaggaatgatatattatatcctttatgaataacaaaagatatagacaaatttgtgcagaatgttttcatgaatcatttaaaacgtttcacaatatatatat
gi|4 : agagcctgagataacgcagttaaaaaaatacattaggacacaatacaacataggaatacgtatcgcccagaaaaacttagaagtacaacaattcaaaaacatgtggactccatataacgagcattctagattgatgtaaacacttaaacatattcaacataccatagtataggtctataggtgtatatatttatatattatatatgtatgtgtatgttaacagatgtacacatttgttatatgatgtatgtataatataacttcatgttctataagtttttttgaaaaccataaacactaacttcagatctgatcttaaaaatcgcatataaattgttttttatatataaaaggtgatgtttattagttaaaacaaacgtaaacccaattttcaccagtattaacaagATA-----GTATAAGTCTATAGG--NNNNNNNNNN----NN---NNNN----------------------N----NNNNNNNNNNNNNNNNNNNNNNGTGTGTTTACAG-ATGTACACAT-TTGTTATATGATGTA--TATATATATATA-A-TATAACTTCATGTTCCATAATTTTATATGAAAACCATTTAC-
gi|4 : TTTTCCCCCAGAATGCTATAT---ATCCTTTATGAGTAACAAAGAATACAAAGACAAATTTGT----GCAGAATG----TTTTTATAAATCATTTAA----AACAGTTCGCTCTAT-------ATAactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagattttcccccagaatgctatatatcctttatgagtaacaaagaatacaaagacaaatttgtgcagaatgtttttataaatcatttaaaacagttcgctctatata
gi|5 : atagtataagtctataggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtgtgtttacagatgtacacatttgttatatgatgtatatatatatataatataacttcatgttccataattttatatgaaaaccatttacactaacttccgatcttatctttaaaattgcatataaattgtttttatatttaaaagataatgtatataaattaaaaaaaaacaaccgtaaacccagtacatacaaaatgtatagattatactatagaGG--TGTATGTATA----TA---TATA----------------------T----TATACATGTATGT---------TTATGTTTACAG-ATGCACACAT-TTGTTATATGATGTA--TA----CACAAA-A-TATAACTTCATGTTCCATAATTTTCTATGAAAACCATAAAC-
gi|5 : TTTTCCCCCAGAATGATATAT---ATCCTTTAAGAATAACAAAGGATAAAAAGACAAATTTGT----GCAGAATG----TTTTCATGAATCATTTAA----AACAGTTCGCTATAT-------ATATTTATGTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttttcccccagaatgatatatatcctttaagaataacaaaggataaaaagacaaatttgtgcagaatgttttcatgaatcatttaaaacagttcgctatatatatttatgtata
gi|6 : ggtgtatgtatatatatattatacatgtatgtttatgtttacagatgcacacatttgttatatgatgtatacacaaaatataacttcatgttccataattttctatgaaaaccataaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCAAAGTATAATATATTTAAACAAAGATTAAAA-AGTCAGAGCCTGAGATAACACAGTTTAAAAAATACATTAGGACAC---AATACAAC-ATAGGAAGATG------TATCGCTCAGAAAAACTTAGAAGTACAAAAT--TTCGAAA--ACATGTGGACTCCATATA-TGAGCATTATAAATTGATGTTAACACTTTAACATATTCAACACACAATA-----AGATAAGTCTATAGT--TGTATGTATA----TA---TATA----------------------T----TATGTATACGTGT---------GTATGTTTACAG-ATGTACACAT-TTGTTATACGATGTAATTA----TATATA-A-TATAACTTCATGTTCCATAAGTTTCTATGAAAACCATTAAC-ta
gi|7 : ACAGGATGTACACAT-TTGTTATATGATGTA--TATA--TATATA-A-TATAACTTCATGTTCCATAATTTTTTATGAAAACCATTAAC-a
gi|7 : TTTTTCCCCAGAATGATATAT---ATCCTTTATGAATTACAAAGGATACAAAGACAAATTTGT----GCAGAATG----TTTTTATGAATCATTTAA----AACAGTTCGCTATAT-------ATATTTATGTAactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagatttttccccagaatgatatatatcctttatgaattacaaaggatacaaagacaaatttgtgcagaatgtttttatgaatcatttaaaacagttcgctatatatatttatgta
gi|8 : acaggatgtacacatttgttatatgatgtatatatatataatataacttcatgttccataattttttatgaaaaccattaacactaacttccgatctgatctcaaaaatcgcataaaaaatataaatttttatatttaaaagattatgtatataaatttaaaaaaaacgtaaacccaatacatacaaaatgtatagattatactatagaAAAACATTATATTTCTAAACAAAGACTAAAAAACTCGGAACCAGAGCTAACACAGTTCAAAACAAAAATTAAGTTAT---AATACAGC-ATAGGAAGATG------TATCGCTCAGAAAAACTTGGAAATTCAGAAA--TTTGAAA--AAATATGGACTCCATATC-AGAACATTTTGGATTGACTTATACAATTAAACATATTCAAAATACCATG-----ATATAG----ATA----TGAATGTATA----TG---TGTG----------------------TG---TATGTATGTAT
gi|9 : AGTATTATATATTTAATCAAAGATTAAAGTATTCAGAGCCTAAGATAACACTGTTCAAAAAATACATTAGAACAC---AATGCAAC-ATATGAAGATGACAATGTATCGCTCAGAAAAACTAAGAAGTACAAAAAAATTT-AAA--TCATGTGAACTCAATATA-TGAGCATTCTAGAGTGATGTATACACTTAACCACATTCAACATACCATG-----ATATAAGTCTATAGGTATGTATGTATA----TA---TATA----------------------T----CA---------------------TATGTTTACAT-ATGCATATATATTATT-TATGATATA--accatactatagtttcatgttcaatagtaaatgttaagattatattaaaaccatg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): ATATACTTTATTTTTAAATGTAAAAGATGATGTATATTAATTAAACAAATCAACAACAACGTAAACCAATTACAT