lowQualScore : 11111111
lowQualScore : 3 3 2 444 2 444 44444444 3
lowQualScore : . . . ... . ... ........ .
lowQualScore : 5 1 3 777 7 777 00000000 1
consensus : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
Reference ( gi|4 ) : GTGACTGGTGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|3 : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--T-----TTTGTT-CAGT
gi|6 : GTGACTGATGTTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCACATTGAGGACAATCGGCAAA---AGTG-A---G--------TTTTTT-CAGTc
gi|10 : TGACTGGTGCTGAAGACGTCATTTT--CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---T--T-----TTTTTT-
gi|1 : TGACTGATGCTGAAGACGCCATTTTT-CGTGATACTGATAGCTGGTCATCAGCTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--TTGTTGTTTTTT-CAGT
gi|7 : TGACTGATGCTGAAGACGCTATTTTT-CCTGATACTGATAGCTGGCCACCAACTCATCATATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT--AGTc
gi|9 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATACTGATAGCTG-TCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTGAA---G--T-----TTTTTT-
gi|2 : TGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGATCATCTACACATCAAGTTGAGGACAATCGGTAAA---AGTG-A---GTTT-----TTTTTT-CAGTt
gi|5 : TGATTTATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTTGTCATAAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--------TTTTTT-CAGT
gi|8 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATATTGATAGCTGGTCATCAACTCATCAAATTGAGGACAAATGGCAAATTTAGTG-A---G--T-----TTTTTc
gi|14 : TGGCTGGTGCTGAAGACGCCATTTTT-CCTGAAACTGATAGCTGGTCATCAATTCATCACATTGAGGACAAGCGGCAAA---AGTG-A---G--
gi|11 : TGTCTAATGCTGAAGACGCCATTTT--CCTGATACTGATAGTTGGTCATCAACTCATCACACTGAGGACAATCGGCAAA---AGTG-A---G--G-----TTTTTT-g
gi|13 : TGAATGATGCTGAAGACGCCATTTTT-CCTGATACTGATAAGTGGTCATC-AC-------ATTAAGAACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|12 : TGACTGATGCTGAAGACGTCATTTTTTCCAGATACTGATAGCTGGTCATCAA--------ATAGAGGACAATGGGTAAA---AGTG-A---G--------TTTTTT-CAGT
gi|15 : ACAGGTGGTCATCAACTCATCTCATTGAGGACAAGCGGCAAA---AGCG-AAGTG--T-----TTTTTT-
gi|16 : TCATCAAACTGAGGCCAATCGGCAAA---AGTG-A---G--T-----TTTTTTCCAGTttcttcagtttt
Alignments
lowQualScore : 11111111
lowQualScore : 2 1 444 2 444 22222222 2
lowQualScore : . . ... . ... ........ .
lowQualScore : 9 6 444 5 444 55555555 9
consensus : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
Reference ( family-2031 ) : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|1 : TGACTGATGCTGAAGACGCCATTTTT-CGTGATACTGATAGCTGGTCATCAGCTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--TTGTTGTTTTTT-CAGT
gi|10 : TGACTGGTGCTGAAGACGTCATTTT--CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---T--T-----TTTTTT-c
gi|11 : TGTCTAATGCTGAAGACGCCATTTT--CCTGATACTGATAGTTGGTCATCAACTCATCACACTGAGGACAATCGGCAAA---AGTG-A---G--G-----TTTTTT-
gi|12 : TGACTGATGCTGAAGACGTCATTTTTTCCAGATACTGATAGCTGGTCATCAA--------ATAGAGGACAATGGGTAAA---AGTG-A---G--------TTTTTT-CAGT
gi|13 : TGAATGATGCTGAAGACGCCATTTTT-CCTGATACTGATAAGTGGTCATC-AC-------ATTAAGAACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|14 : TGGCTGGTGCTGAAGACGCCATTTTT-CCTGAAACTGATAGCTGGTCATCAATTCATCACATTGAGGACAAGCGGCAAA---AGTG-A---G--
gi|15 : ACAGGTGGTCATCAACTCATCTCATTGAGGACAAGCGGCAAA---AGCG-AAGTG--T-----TTTTTT-g
gi|16 : TCATCAAACTGAGGCCAATCGGCAAA---AGTG-A---G--T-----TTTTTTCCAGTttcttcagtttt
gi|2 : TGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGATCATCTACACATCAAGTTGAGGACAATCGGTAAA---AGTG-A---GTTT-----TTTTTT-CAGTc
gi|3 : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--T-----TTTGTT-CAGT
gi|4 : GTGACTGGTGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGTc
gi|5 : TGATTTATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTTGTCATAAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--------TTTTTT-CAGT
gi|6 : GTGACTGATGTTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCACATTGAGGACAATCGGCAAA---AGTG-A---G--------TTTTTT-CAGTc
gi|7 : TGACTGATGCTGAAGACGCTATTTTT-CCTGATACTGATAGCTGGCCACCAACTCATCATATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT--AGT
gi|8 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATATTGATAGCTGGTCATCAACTCATCAAATTGAGGACAAATGGCAAATTTAGTG-A---G--T-----TTTTT
gi|9 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATACTGATAGCTG-TCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTGAA---G--T-----TTTTTT-
Alignments
lowQualScore : 11111111
lowQualScore : 2 1 444 2 444 22222222 2
lowQualScore : . . ... . ... ........ .
lowQualScore : 9 6 444 5 444 55555555 9
consensus : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
Reference ( family-2031 ) : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|1 : TGACTGATGCTGAAGACGCCATTTTT-CGTGATACTGATAGCTGGTCATCAGCTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--TTGTTGTTTTTT-CAGT
gi|10 : TGACTGGTGCTGAAGACGTCATTTT--CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---T--T-----TTTTTT-c
gi|11 : TGTCTAATGCTGAAGACGCCATTTT--CCTGATACTGATAGTTGGTCATCAACTCATCACACTGAGGACAATCGGCAAA---AGTG-A---G--G-----TTTTTT-
gi|12 : TGACTGATGCTGAAGACGTCATTTTTTCCAGATACTGATAGCTGGTCATCAA--------ATAGAGGACAATGGGTAAA---AGTG-A---G--------TTTTTT-CAGT
gi|13 : TGAATGATGCTGAAGACGCCATTTTT-CCTGATACTGATAAGTGGTCATC-AC-------ATTAAGAACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|14 : TGGCTGGTGCTGAAGACGCCATTTTT-CCTGAAACTGATAGCTGGTCATCAATTCATCACATTGAGGACAAGCGGCAAA---AGTG-A---G--
gi|15 : ACAGGTGGTCATCAACTCATCTCATTGAGGACAAGCGGCAAA---AGCG-AAGTG--T-----TTTTTT-g
gi|16 : TCATCAAACTGAGGCCAATCGGCAAA---AGTG-A---G--T-----TTTTTTCCAGTttcttcagtttt
gi|2 : TGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGATCATCTACACATCAAGTTGAGGACAATCGGTAAA---AGTG-A---GTTT-----TTTTTT-CAGTc
gi|3 : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--T-----TTTGTT-CAGT
gi|4 : GTGACTGGTGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGTc
gi|5 : TGATTTATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTTGTCATAAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--------TTTTTT-CAGT
gi|6 : GTGACTGATGTTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCACATTGAGGACAATCGGCAAA---AGTG-A---G--------TTTTTT-CAGTc
gi|7 : TGACTGATGCTGAAGACGCTATTTTT-CCTGATACTGATAGCTGGCCACCAACTCATCATATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT--AGT
gi|8 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATATTGATAGCTGGTCATCAACTCATCAAATTGAGGACAAATGGCAAATTTAGTG-A---G--T-----TTTTT
gi|9 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATACTGATAGCTG-TCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTGAA---G--T-----TTTTTT-
blockSeqs : T A TTT A AGT TTT C
blockSeqs : . C . . . T .
blockSeqs : . C . . . G .
blockSeqs : . C . . . T .
blockSeqs : . A . . . T .
blockSeqs : . A . . . T .
blockSeqs : . A . . . T .
blockSeqs : . A . . . T .
blockSeqs : . A . . . T .
blockSeqs : . C . . . T .
blockSeqs : . T . . . T .
blockSeqs : . A . . . . .
blockSeqs : . A . . . . .
blockSeqs : . . . . .
blockSeqs : . . . .
blockSeqCons : T*******
originalCons : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
finalCons : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---GT-------TTTTTT-CAGT
Alignments
lowQualScore : 11111111
lowQualScore : 2 1 444 2 444 22222222 2
lowQualScore : . . ... . ... ........ .
lowQualScore : 9 6 444 5 444 55555555 9
consensus : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
Reference ( family-2031 ) : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|1 : TGACTGATGCTGAAGACGCCATTTTT-CGTGATACTGATAGCTGGTCATCAGCTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--TTGTTGTTTTTT-CAGT
gi|10 : TGACTGGTGCTGAAGACGTCATTTT--CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---T--T-----TTTTTT-c
gi|11 : TGTCTAATGCTGAAGACGCCATTTT--CCTGATACTGATAGTTGGTCATCAACTCATCACACTGAGGACAATCGGCAAA---AGTG-A---G--G-----TTTTTT-
gi|12 : TGACTGATGCTGAAGACGTCATTTTTTCCAGATACTGATAGCTGGTCATCAA--------ATAGAGGACAATGGGTAAA---AGTG-A---G--------TTTTTT-CAGT
gi|13 : TGAATGATGCTGAAGACGCCATTTTT-CCTGATACTGATAAGTGGTCATC-AC-------ATTAAGAACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGT
gi|14 : TGGCTGGTGCTGAAGACGCCATTTTT-CCTGAAACTGATAGCTGGTCATCAATTCATCACATTGAGGACAAGCGGCAAA---AGTG-A---G--
gi|15 : ACAGGTGGTCATCAACTCATCTCATTGAGGACAAGCGGCAAA---AGCG-AAGTG--T-----TTTTTT-g
gi|16 : TCATCAAACTGAGGCCAATCGGCAAA---AGTG-A---G--T-----TTTTTTCCAGTttcttcagtttt
gi|2 : TGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGATCATCTACACATCAAGTTGAGGACAATCGGTAAA---AGTG-A---GTTT-----TTTTTT-CAGTc
gi|3 : GTGACTGATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--T-----TTTGTT-CAGT
gi|4 : GTGACTGGTGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT-CAGTc
gi|5 : TGATTTATGCTGAAGACGCCATTTTT-CCTGATACTGATAGCTTGTCATAAACTCATCAAATTGAGGACAATCGGCAAA---AGTG-A---A--------TTTTTT-CAGT
gi|6 : GTGACTGATGTTGAAGACGCCATTTTT-CCTGATACTGATAGCTGGTCATCAACTCATCACATTGAGGACAATCGGCAAA---AGTG-A---G--------TTTTTT-CAGTc
gi|7 : TGACTGATGCTGAAGACGCTATTTTT-CCTGATACTGATAGCTGGCCACCAACTCATCATATTGAGGACAATCGGCAAA---AGTG-A---G--T-----TTTTTT--AGT
gi|8 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATATTGATAGCTGGTCATCAACTCATCAAATTGAGGACAAATGGCAAATTTAGTG-A---G--T-----TTTTT
gi|9 : TGACTGATGCTGAAGACGTCATTTTT-CCTGATACTGATAGCTG-TCATCAACTCATCAAATTGAGGACAATCGGCAAA---AGTGAA---G--T-----TTTTTT-