lowQualScore : 111111111111111111111111111111111111 222222222222222222222222222222222
lowQualScore : 222 1 111111 333333333333333 22 2222 222 11 1 2 111111 1 1 2222 1 222 2 1 1 1 44444444 222222222222222222222222222222222222 444444 000000000000000000000000000000000 1 222 1 77777777
lowQualScore : 5 6 222 1 66 777 0 7 55 0 666 777 9 4 2 666666 4 000000000000000 6 77 5 8 5555 7 222 55 44 1 0 6 22 6 7 5 1 99 3 4 1 3 3 8 3 777777 3 3 5 3 8 8 0 6 5 5555 0 4 8 6 999 0 7 6 3 5 5 88888888 777777777777777777777777777777777777 2 2 666666 4 999999999999999999999999999999999 6 5 111 7 44444444 6
lowQualScore : . . ... . .. ... . . .. . ... ... . . . ...... . ............... . .. . . .... . ... .. .. . . . .. . . . . .. . . . . . . . ...... . . . . . . . . . .... . . . . ... . . . . . . ........ .................................... . . ...... . ................................. . . ... . ........ .
lowQualScore : 1 3 222 2 11 888 1 0 44 1 222 888 9 3 0 444444 7 222222222222222 7 33 4 0 2222 0 333 44 44 8 2 5 44 2 8 0 7 44 5 8 7 2 2 2 2 222222 0 0 0 2 2 0 0 2 0 5555 0 0 3 0 000 0 0 0 0 0 0 00000000 000000000000000000000000000000000000 5 5 555555 0 000000000000000000000000000000000 0 0 000 0 00000000 0
consensus : NCGCTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTAC---CCAAGATGGCGGACGCT-AAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT--------TCGG---ATGC-TTTGTTGGCGTGAATTCGGCATAGGTT-GAAGAAGTACCCGCACTTATAATTTTATCCACACACGAAGTGTAAC-TGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGCAAATTGAAGCGGTGAGGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAATACATACTTTATTTTTTATNT----TTTCGATGCAATAGTATGATATCTCTCAATCCCCGAAAACCGCA-TT-AAATTATGTG-A-AGTA-ANAATTGAGATAATGCTGCTTTTCCGGAAATATAAAAATCGGAAANGTCAACGGCACAGCTGTGATANTTTGCGCCTATTTTCAAACAANTCATAANNAGTNGACANNTNNTGTTTACGGCANANTNNCCNAAANTGCCAACGGCACATTCAGTTTCGGAAACA-------AAATATACATCCATTAAAATCTATGAATTATTCCATTTCGAACA
Reference ( gi|1 ) : ACACTGTCGTGATCGAGCTCCGGTACGTCCTTTTTTT--GAACCGGCACAGA--CTAC---CCAAGATGGCGGACGAT-AAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAATTGTGATTATGCAACAAATATGGCGTAA------ATAT--------TCGA---ATGC-TTT-TTGGTGTGAATTCGGAATAGGTT-GAAGAAGTACCCGCACTTAAAGTTTTATCAACAAAAGAAGTGTAAC-TGTTAAAATTCTGTTCTAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAAGTCTCCCAAGTAAACTACATCGACTACATATTTTATTTTTTATAT----TTTCGATGCAATAATATAATATCTCGCAATCCCCGAAAACTGCA-TT-AAATAATATG-A-GGTA-ATAATTGAGATATTGCTATTTTTATTGAAA-ATAAAATTTGGAAAAGGCACCGGCACAGCGGGTATA-TTTGCGCTTATTTTT---TAATTCA-AAACAGTAG--AATTCA-----ACGGCACAGTAATTATAAATGTCAACGGCACA------TTAGAAAATATTTCCGTAAGTA-----CTATGAAAATATCTGAAATAT---ATTT-GAATACA
gi|6 : CACTGCCATTATCGAACTCGGGCACATCCTTTTTG---GAACTTGCACGCA--CTAT---CCAAGATGGCAGAAGCT-AAAAATGAT--AAAAGTTAGGTGGTTAC---TAACAGGTGTGATAATGCGACGAACATGGCGTTA------ATCT--------ATAA---ATGC-TTT----GC-TGAACTCGGCATAGGTT-GAAGAAGTATC--------------TATCCACACATGAAGTGTAACTTGCT---ATTCTATTGTAAAACAGCCAGTCAGTTGAGT-TTTGAAAATTGAATTGGTGAAGCAATACTTTTCTTAACTCTCTTAAGTAAAGTACATTGAATAC
gi|15 : tCACTGTCGTGATAAATCTCCGGTACGTGCTTTTTTTTGGATCCGGCACATA--CTAC---CCAAGATAGTGAACGCT-AAAAGTGCT--CAAAGGCAGGTGGTT
gi|12 : tCGCTGACATGATGGAGCACCAGCACATCCTTTTTT----AACATGCATA-A--CTAC---TAAAGTTGGCGGAC-ATGAAAAGTGTT--CAAAGGTGTCTGTTTATTTGTAATAAGTGTAATTATGCGACAA
gi|4 : ACTGTTGTGATCGAGCTCCGGCACGTCCTTTTTG---GAACCGACACAGA--CTAC---CGAAGATGGCGGATGAT-AAAAATCCG--CAAAGGAAAGAGGTTAC---TAACAATAGTGATTATACGACCACTATGGCGTAA------ATAT--------TCAG---ATGC-TTTGTTGGTGTGAATTTTGAATAGATT-GAA-AAGTACCCGCACTTACAATTTTATCAACACACAAAGTGTAAC-AGTTGCAATTCTGTTCTATATCAGCCAGTAAGTCGATT-TTTGTCAATTGATGCGGTGAGGCAATTCTTT----AAAT------AGTAAACTGCACTGAca
gi|14 : ATTGTCGTGATCGAGCTCCGGCACATCCTTTATTG--GAACCGGCATAGA--CTAC---CCAAGATGGCGGACGAT-AACACTGTC--CAAAGGTAGGTGGTTAC---TAAacaaagacatttatt
gi|17 : CTGTCGTGATCGAACTCCG--AC---------TT--GGA---------A--CTAC---CCAAGATGACTGACGCT--AAGATACT--TGAAGGT
gi|10 : TCGTGGTCGAGTTCCGGCACATTCATTTTTG--GAAATGGCACATATGCTACGGCCTAAGTCGGCGGACCCT-TGAAATGCT--CCAAGG-AGATGGCTAC---TTGCAAATA-GATTATGTGACAAATATGGGATAA------ATCT--------TTG
gi|13 : TTTT--GAACCGACACAAA--TTTC---CGAAGATGGCGGACGCT-AAAAATGCTGGAAAACGTAGGTGGTTAC---TAACAAGTGGGATTATGCAATAAATACGttgtcaaacgtttcgttcatatgcatttcgg
gi|7 : cttttcagCCGACACATA--CTAC---CCAAGATTGCTGACGCT-GAAAAT------AATGGTAGGTGGGTAC---TAACAAGTATGATTATGCGACGAA-ATGGCGTAT------ATCT--------TCAG---ATGC-ATC---GACGTGAACTCGGCATAGGATAGAAGTAGTACACACACTTATAATTTTATCCACACATGAAGTATAAC-TGTTGAAATCATGTACTCAAACAGC---TC-CTCGATT-TTTGTAAAGTGAA
gi|16 : GGTAGGTGGTTAC---TAACAAGTGTGATCATGTGACAAATACTGCGTAA------ATCT--------TCAG---ATGC-TTTATTAATGTGAAtccgta
gi|5 : GTTAC---TAATAATAGTGATTATGCGACAACTATAGCGTAACTACATGTAT--------TTGG---ATGC-TTTGTTGGTGTGAATTCGGAATAGGCT-GAAGAAGTACCCGCACTTACAATTTTTTCAACACACGAAATGTAAC-TGTCGCAATTCTGTCCAAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAGGTGATTCTTTTCTCAATTCTCCCAAGTAAACTACATCGA-TAAATACTTTA-TTTTTATTT----TTTTGATGTAACAGTATACTGTCTCGCAATTCCCGAACACTGCA-TT-AAAATCTTTG-A-AGTA-ATAAT
gi|2 : CAAGTGTCATTATACGA-----------TAA------ATATGGCGTAAATCTGCATATGCATTG-TTGATGCGACTTCGGCTTAGGTT-GAAGAAGTTCCCGCACTTTTATTTTTATCCACACATGAAATGTAAC---TTCAGATTCTGTT---AAACAGCGGGTTAGTCGAAT-TTTTCAACTCGAAGCGGTGAAGCAATTCTTT-------TCTCCTGAGTATATTCCGCCGAATATATACTTTATTTATTATTT----TTCTGATGTAATAGTGTGATATCTCTAAATCCCC-AAAACCGTATTT-ACTTAATATGTACAGTA-GAAATTGAGATATTGCTGTTTTTCTGGAAA-ATAAAAATCGGAAACGTCAACGGCACAGCTGTGATAGTTTGTGCCTATT---------TTCA-AACGAGTAAACAATTGATGTTTACGGCACAGTTGCCCAAAATGTCAACGGCACA------TTCGGAA
gi|11 : CACACTTTTATTTTTATTCATACATGACGTGTGAC-TGTTGAAATTATGTCCTTGA-----CGGTTGGTCGATTGTTTTCAAATCGAAGCCGTGTAGCAATTATTTTCTCAtaaataaaaaaagaatacattttttaaaacgtattatatattattctatatcagacacccgatatccgttattaatctctttttttctaaatacagttatatattatgaaaattagtat
gi|8 : GTGCATC-TGTTGCAATTCTGTCCTAAA-CAACCAGCCAGTCGAGT-TTTGCAAATTGAAGCGGTGAGG-AAT-CTTCTCTCAACTCTCCTATGTAAACTACATTGATTACATACTTTATTTTTTATAA----TTTCCAAGCAATAGTATGATATTTCGCAATCCC---AAACTGCA-TT-AAATTATGTG-A--GTA-ATAATTGAGATAATGCTgctcgtctgcgtatattt
gi|9 : AAC-TTTTGAAATTCTGTCCTAAAACTGCTTGTCAGTCATTT-TTTGTGAATTGAATCAATGAAGCAATTCTTTAATCAACTCTCCTAAATTAATAAC-TCGA------AGTTTATACTTTATATATTATTTTGATGCAATAATAAGATATCTTTCTATCCCCAAGAACTGCA-
gi|3 : cttctttttaaacaagcacaaactaccT----TTTCTATACAATAGCACGATATCTCTCAAT-CTCGAAAAACGCA-TTGAAAT-ATGTG-A-ACTAGAAAATGGAGGGAATGCTGCTTTT-CTGAAATATAAAAATCGGAAAAGTCAACAGCACAGCTGTGATATTTTGCGCTTATTTTCAAACAAGTTATAAACAATTG--ATATCT-----ATGGCAAATTGCTCAAAATTGCCAACAGCACATTCAGTTTAAAAAACA-------AAATATACATCCATTAAAATCTATGAATTATTCCATTTCGAAC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): ATATTTGTTGTCGGAGACATAAACTCAAACATATTTGTTTTTGGA
Unaligned ( gi|19 ): TGTCTACGGCACAGTTGCCCACAATGTTAACGATATAT
Alignments
lowQualScore : 111 111111 11 1111 111 2 1 666666666666666666666 7777777777 2222 1 222
lowQualScore : 2 1 888 6 55 777 55 777 444444 1 1 0 55 2 6 44 4 1 4 4 1 4 44 4 1 4 1 0 6 1 0 5 1 6 1 1 3 11 0 5555 5 8 1 4 0 111 3 1 4 0 555555555555555555555 22 777777 1 1 22 1 1 2 6 0000000000 8888 7 4 7 3 333 4
lowQualScore : . . ... . .. ... .. ... ...... . . . .. . . .. . . . . . . .. . . . . . . . . . . . . . . .. . .... . . . . . ... . . . . ..................... .. ...... . . .. . . . . .......... .... . . . . ... .
lowQualScore : 0 1 888 3 55 000 55 000 444444 7 7 1 44 5 7 33 0 1 4 8 7 8 66 4 0 4 7 4 5 4 1 7 7 7 4 0 0 88 7 4444 6 0 0 0 7 000 7 0 0 7 000000000000000000000 00 000000 0 0 00 0 0 0 7 7777777777 3333 3 7 3 3 333 0
consensus : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTACT---AACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCTTCGGATGCTTTGTTGGTGTGAATTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAA-ATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAACAA-TCA-AA--AGTAGACAATTGATGTCTACGGCACAGTNGCCNAAAATGTCAACGGCACATTCAG--T---AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
Reference ( family-2022 ) : NCGCTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTACT---AACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCTTCGGATGCTTTGTTGGCGTGAATTCGGCATAGGTT-GAAGAAGTACCCGCACTTATAATTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGCAAATTGAAGCGGTGAGGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATNTTTTCGATGCAATAGTATGATATCTCTCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ANAATTGAGATAATGCTGCTTTTCCGGAAATATAAAAATCGGAAANGTCAACGGCACAGCTGTGATANTTTGCGCCTATTTTCAAACAANTCATAANNAGTNGACANNTNNTGTTTACGGCANANTNNCCNAAANTGCCAACGGCACATTCAGTTTCGGAAACAAAA----TATACATCCATTAAAAT-CTATGA---ATTATTCCATTTCGAACA
gi|1 : CACTGTCGTGATCGAGCTCCGGTACGTCCTTTTTTT--GAACCGGCACAGA--CTA---CCCAAGATGGCGGACGATAAAAATGCT--CAAAGGTAGGTGGTTACT---AACAATTGTGATTATGCAACAAATATGGCGTAA------ATATTCGAATGCTTT-TTGGTGTGAATTCGGAATAGGTT-GAAGAAGTACCCGCACTTAAAGTTTTATCAACAAAAGAAGTGT-AACTGTTAAAATTCTGTTCTAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAAGTCTCCCAAGTAAACTACATCGAC-TACATAT-TTTATTTTTTATATTTTCGATGCAATAATATAATATCTCGCAATCCCCGAAAACTGCATTAAAT---AATATGAGGTA-ATAATTGAGATATTGCTATTTTTATTGAAA-ATAAAATTTGGAAAAGGCACCGGCACAGCGGGTATA-TTTGCGCTTATTTTT---TAATTCA-AAACAGTAG--AATTCA-----ACGGCACAGTAATTATAAATGTCAACGGCACATT-AG----------AAAA----TAT--TTCCGT--AAGTACTATGA---A
gi|10 : aTCGTGGTCGAGTTCCGGCACATTCATTTTTG--GAAATGGCACATATGCTACGGCCTAAGTCGGCGGACCCTTGAAATGCT--CCAAGG-AGATGGCTACT---TGCAAATA-GATTATGTGACAAATATGGGATAA------ATCTTTGaatatctgaaatatatttgaataca
gi|11 : CACACTTTTATTTTTATTCATACATGACGTGT-GACTGTTGAAATTATGTCCTTGA-----CGGTTGGTCGATTGTTTTCAAATCGAAGCCGTGTAGCAATTATTTTCTCAGCTCGTCTGCGTAttgtcaaacgtttcgttcatatgcatttcgg
gi|12 : CGCTGACATGATGGAGCACCAGCACATCCTTTTTT----AACATGCATA-A--CTA---CTAAAGTTGGCGGACATGAAAAGTGTT--CAAAGGTGTCTGTTTATTTGTAATAAGTGTAATTATGCGACAAtattt
gi|13 : TTTT--GAACCGACACAAA--TTT---CCGAAGATGGCGGACGCTAAAAATGCTGGAAAACGTAGGTGGTTACT---AACAAGTGGGATTATGCAATAAATACGca
gi|14 : cttttcagTGTCGTGATCGAGCTCCGGCACATCCTTTATTG--GAACCGGCATAGA--CTA---CCCAAGATGGCGGACGATAACACTGTC--CAAAGGTAGGTGGTTACT---AA
gi|15 : atCACTGTCGTGATAAATCTCCGGTACGTGCTTTTTTTTGGATCCGGCACATA--CTA---CCCAAGATAGTGAACGCTAAAAGTGCT--CAAAGGCAGGTGGTT
gi|16 : tGGTAGGTGGTTACT---AACAAGTGTGATCATGTGACAAATACTGCGTAA------ATCTTCAGATGCTTTATTAATGTGAA
gi|17 : CTGTCGTGATCGAACTCCGAC-----------TT--GGA---------A--CTA---CCCAAGATGACTGACGCT-AAGATACT--TGAAGGT
gi|19 : TGTCTACGGCACAGTTGCCCACAATGTTAACGATATAT
gi|2 : CAAGTGTCATTATACGATAAATATGGCGTAA------ATCTGCATATGCATTGTTGATGCGACTTCGGCTTAGGTT-GAAGAAGTTCCCGCACTTTTATTTTTATCCACACATGAAATGT-AAC--TTCAGATTCTGTT---AAACAGCGGGTTAGTCGAAT-TTTTCAACTCGAAGCGGTGAAGCAATTCTTT-------TCTCCTGAGTATATTCCGCCGAA-TATATAC-TTTATTTATTATTTTTCTGATGTAATAGTGTGATATCTCTAAATCCCC-AAAACCGTATTTACTTAATATGTACAGTA-GAAATTGAGATATTGCTGTTTTTCTGGAAA-ATAAAAATCGGAAACGTCAACGGCACAGCTGTGATAGTTTGTGCCTATTTTCAAAC----------GAGTAAACAATTGATGTTTACGGCACAGTTGCCCAAAATGTCAACGGCACATTCGGAAT---AAATAAAAAAAGAATACATTTTTTAAAAC-GTATTATATATTATTCTATATCAGACA
gi|3 : TTTTCTATACAATAGCACGATATCTCTCAATCTC-GAAAAACGCATTGAAA---TATGTGAACTAGAAAATGGAGGGAATGCTGCTTTTCTG-AAATATAAAAATCGGAAAAGTCAACAGCACAGCTGTGATATTTTGCGCTTATTTTCAAACAAGTTATAA-------ACAATTGATATCTATGGCAAATTGCTCAAAATTGCCAACAGCACATTCAGTTTAAAAAACAAAA----TATACATCCATTAAAAT-CTATGA---ATTATTCCATTTCGAACAcccgatatccgttattaatctctttttttctaaatacagttatatattatgaaaattagtat
gi|4 : CTGTTGTGATCGAGCTCCGGCACGTCCTTTTTG---GAACCGACACAGA--CTA---CCGAAGATGGCGGATGATAAAAATCCG--CAAAGGAAAGAGGTTACT---AACAATAGTGATTATACGACCACTATGGCGTAA------ATATTCAGATGCTTTGTTGGTGTGAATTTTGAATAGATT-GAA-AAGTACCCGCACTTACAATTTTATCAACACACAAAGTGT-AACAGTTGCAATTCTGTTCTATATCAGCCAGTAAGTCGATT-TTTGTCAATTGATGCGGTGAGGCAATTCTTT----AAAT------AGTAAACTGCACTGAA-CAAAGACATTTATTtcgaatatccgttatgactcatatttctttctttgatacagttgatatattacgaaaataaatatc
gi|5 : aGTTACT---AATAATAGTGATTATGCGACAACTATAGCGTAACTACATGTATTTGGATGCTTTGTTGGTGTGAATTCGGAATAGGCT-GAAGAAGTACCCGCACTTACAATTTTTTCAACACACGAAATGT-AACTGTCGCAATTCTGTCCAAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAGGTGATTCTTTTCTCAATTCTCCCAAGTAAACTACATCG-A-TAAATAC-TTTA-TTTTTATTTTTTTGATGTAACAGTATACTGTCTCGCAATTCCCGAACACTGCATTAAAA---TCTTTGAAGTA-ATAAT
gi|6 : CACTGCCATTATCGAACTCGGGCACATCCTTTTTG---GAACTTGCACGCA--CTA---TCCAAGATGGCAGAAGCTAAAAATGAT--AAAAGTTAGGTGGTTACT---AACAGGTGTGATAATGCGACGAACATGGCGTTA------ATCTATAAATGCTTTGC-----TGAACTCGGCATAGGTT-GAAGAAGTATC--------------TATCCACACATGAAGTGT-AAC--TTGCTATTCTATTGTAAAACAGCCAGTCAGTTGAGT-TTTGAAAATTGAATTGGTGAAGCAATACTTTTCTTAACTCTCTTAAGTAAAGTACATTGAA-TAC
gi|7 : tCCGACACATA--CTA---CCCAAGATTGCTGACGCTGAAAAT------AATGGTAGGTGGGTACT---AACAAGTATGATTATGCGACGAA-ATGGCGTAT------ATCTTCAGATGC---ATCGACGTGAACTCGGCATAGGATAGAAGTAGTACACACACTTATAATTTTATCCACACATGAAGTAT-AACTGTTGAAATCATGTACTCAAACAGC---TC-CTCGATT-TTTGTAAAGTGAA
gi|8 : GTGC-ATCTGTTGCAATTCTGTCCTAAA-CAACCAGCCAGTCGAGT-TTTGCAAATTGAAGCGGTGAGG-AAT-CTTCTCTCAACTCTCCTATGTAAACTACATTGAT-TACATAC-TTTATTTTTTATAATTTCCAAGCAATAGTATGATATTTCGCAATCCC---AAACTGCATTAAAT---TATGTG-AGTA-ATAATTGAGATAATGCTtccgta
gi|9 : TTTTAAACAAGCACAAACTACCAACTTTTGAAATTCTGTCCTAAAACTGCTTGTCAGTCATTT-TTTGTGAATTGAATCAATGAAGCAATTCTTTAATCAACTCTCCTAAATTAATAAC-TCGAAGTTTATAC-TTTATATATTATTTT---GATGCAATAATAAGATATCTTTCTATCCCCAAGAACTGCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTGTTGTCGGAGACATAAACTCAAACATATTTGTTTTTGGA
Alignments
lowQualScore : 111 111111 111111 11 1111 2 8888888888 1 555555555555 2222 1 222
lowQualScore : 1 888 6 55 777 55 777 444444 444444 2 0 0 1 5 1 6 44 3 1 4 4 1 4 44 4 1 4 0 6 1 0 5 1 6 1 1 2 11 0 5555 5 8 1 1 6 3333333333 88 33 0 2 1 1 0 6 999999999999 8888 7 3 7 3 333 1
lowQualScore : . ... . .. ... .. ... ...... ...... . . . . . . . .. . . . . . . .. . . . . . . . . . . . . . .. . .... . . . . . .......... .. .. . . . . . . ............ .... . . . . ... .
lowQualScore : 1 888 3 55 000 55 000 444444 444444 0 4 2 1 0 0 7 33 0 1 4 8 7 8 66 4 0 4 4 5 4 1 7 7 7 4 4 5 88 7 4444 6 0 4 0 7 3333333333 00 55 2 5 0 0 0 7 777777777777 3333 3 7 3 3 333 0
consensus : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAAC---TCA-G--AGTAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
Reference ( family-2022 ) : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCGGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAACAA-TCAAA--AGTAGACAATTGATGTCTACGGCACAGTNGCCNAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
gi|1 : CACTGTCGTGATCGAGCTCCGGTACGTCCTTTTTTT--GAACCGGCACAGA--CTA---CCCAAGATGGCGGACGATAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAATTGTGATTATGCAACAAATATGGCGTAA------ATAT------TCGAATGCTTT-TTGGTGTGAA-TTCGGAATAGGTT-GAAGAAGTACCCGCACTTAAAGTTTTATCAACAAAAGAAGTGT-AACTGTTAAAATTCTGTTCTAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAAGTCTCCCAAGTAAACTACATCGAC-TACATAT-TTTATTTTTTATATTTTCGATGCAATAATATAATATCTCGCAATCCCCGAAAACTGCATTAAAT---AATATGAGGTA-ATAATTGAGATATTGCTATTTTTATTGAAAATAAAATTTGGAAAAGGCACCGGCACAGCGGGTATA-TTTGCGCTTATTTTTTAAT---TCAAAACAGTAG--AATTCA-----ACGGCACAGTAATTATAAA-TGTCAACGGCACATT-AG------------AAAA----TAT--TTCCGT--AAGTACTATGA---A
gi|10 : aTCGTGGTCGAGTTCCGGCACATTCATTTTTG--GAAATGGCACATATGCTACGGCCTAAGTCGGCGGACCCTTGAAATGCT--CCAAGG-AGATGGCTAC---TTGCAAATA-GATTATGTGACAAATATGGGATAA------ATCTTTGTTGTCAAACGTTTCGTTCATATGCATTTCGGaatatctgaaatatatttgaataca
gi|11 : CACACTTTTATTTTTATTCATACATGACGTGT-GACTGTTGAAATTATGTCCTTGA-----CGGTTGGTCGATTGTTTTCAAATCGAAGCCGTGTAGCAATTATTTTCTCAGCTCGTCTGCGTA
gi|12 : CGCTGACATGATGGAGCACCAGCACATCCTTTTTT----AACATGCATA-A--CTA---CTAAAGTTGGCGGACATGAAAAGTGTT--CAAAGGTGTCTGTTTATTTGTAATAAGTGTAATTATGCGACAAtattt
gi|13 : TTTT--GAACCGACACAAA--TTT---CCGAAGATGGCGGACGCTAAAAATGCTGGAAAACGTAGGTGGTTAC---TAACAAGTGGGATTATGCAATAAATACGca
gi|14 : cttttcagATTGTCGTGATCGAGCTCCGGCACATCCTTTATTG--GAACCGGCATAGA--CTA---CCCAAGATGGCGGACGATAACACTGTC--CAAAGGTAGGTGGTTAC---TAA
gi|15 : CACTGTCGTGATAAATCTCCGGTACGTGCTTTTTTTTGGATCCGGCACATA--CTA---CCCAAGATAGTGAACGCTAAAAGTGCT--CAAAGGCAGGTGGTT
gi|16 : tGGTAGGTGGTTAC---TAACAAGTGTGATCATGTGACAAATACTGCGTAA------ATCT------TCAGATGCTTTATTAATGTGAA-
gi|17 : CTGTCGTGATCGAACTCCGAC-----------TT--GGA---------A--CTA---CCCAAGATGACTGACGCT-AAGATACT--TGAAGGT
gi|19 : TGTCTACGGCACAGTTGCCCACAA-TGTTAACGATATAT
gi|2 : CAAGTGTCATTATACGATAAATATGGCGTAA------ATCT------GCATATGCATTGTTGATGCGAC-TTCGGCTTAGGTT-GAAGAAGTTCCCGCACTTTTATTTTTATCCACACATGAAATGT-AAC--TTCAGATTCTGTT---AAACAGCGGGTTAGTCGAAT-TTTTCAACTCGAAGCGGTGAAGCAATTCTTT-------TCTCCTGAGTATATTCCGCCGAA-TATATAC-TTTATTTATTATTTTTCTGATGTAATAGTGTGATATCTCTAAATCCCC-AAAACCGTATTTACTTAATATGTACAGTA-GAAATTGAGATATTGCTGTTTTTCTGGAAAATAAAAATCGGAAACGTCAACGGCACAGCTGTGATAGTTTGTGCCTATTTTCAAAC-------G--AGTAAACAATTGATGTTTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCGGAAT-----AAATAAAAAAAGAATACATTTTTTAAAAC-GTATTATATATTATTCTATATCAGACA
gi|3 : TTTTCTATACAATAGCACGATATCTCTCAATCTC-GAAAAACGCATTGAAA---TATGTGAACTAGAAAATGGAGGGAATGCTGCTTTTCTGAAATATAAAAATCGGAAAAGTCAACAGCACAGCTGTGATATTTTGCGCTTATTTTCAAACAAGTTA------TAAACAATTGATATCTATGGCA-AATTGCTCAAAATTGCCAACAGCACATTCAG--TTTAAAAAACAAAA----TATACATCCATTAAAAT-CTATGA---ATTATTCCATTTCGAACAcccgatatccgttattaatctctttttttctaaatacagttatatattatgaaaattagtat
gi|4 : ACTGTTGTGATCGAGCTCCGGCACGTCCTTTTTG---GAACCGACACAGA--CTA---CCGAAGATGGCGGATGATAAAAATCCG--CAAAGGAAAGAGGTTAC---TAACAATAGTGATTATACGACCACTATGGCGTAA------ATAT------TCAGATGCTTTGTTGGTGTGAA-TTTTGAATAGATT-GAA-AAGTACCCGCACTTACAATTTTATCAACACACAAAGTGT-AACAGTTGCAATTCTGTTCTATATCAGCCAGTAAGTCGATT-TTTGTCAATTGATGCGGTGAGGCAATTCTTT----AAAT------AGTAAACTGCACTGAA-CAAAGACATTTATTtcgaatatccgttatgactcatatttctttctttgatacagttgatatattacgaaaataaatatc
gi|5 : GTTAC---TAATAATAGTGATTATGCGACAACTATAGCGTAACTACATGTAT------TTGGATGCTTTGTTGGTGTGAA-TTCGGAATAGGCT-GAAGAAGTACCCGCACTTACAATTTTTTCAACACACGAAATGT-AACTGTCGCAATTCTGTCCAAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAGGTGATTCTTTTCTCAATTCTCCCAAGTAAACTACATCG-A-TAAATAC-TTTA-TTTTTATTTTTTTGATGTAACAGTATACTGTCTCGCAATTCCCGAACACTGCATTAAAA---TCTTTGAAGTA-ATAAT
gi|6 : CACTGCCATTATCGAACTCGGGCACATCCTTTTTG---GAACTTGCACGCA--CTA---TCCAAGATGGCAGAAGCTAAAAATGAT--AAAAGTTAGGTGGTTAC---TAACAGGTGTGATAATGCGACGAACATGGCGTTA------ATCT------ATAAATGCTTTGC-----TGAA-CTCGGCATAGGTT-GAAGAAGTATC--------------TATCCACACATGAAGTGT-AAC--TTGCTATTCTATTGTAAAACAGCCAGTCAGTTGAGT-TTTGAAAATTGAATTGGTGAAGCAATACTTTTCTTAACTCTCTTAAGTAAAGTACATTGAA-TAC
gi|7 : tCCGACACATA--CTA---CCCAAGATTGCTGACGCTGAAAAT------AATGGTAGGTGGGTAC---TAACAAGTATGATTATGCGACGAA-ATGGCGTAT------ATCT------TCAGATGC---ATCGACGTGAA-CTCGGCATAGGATAGAAGTAGTACACACACTTATAATTTTATCCACACATGAAGTAT-AACTGTTGAAATCATGTACTCAAACAGC---TC-CTCGATT-TTTGTAAAGTGAA
gi|8 : GTGC-ATCTGTTGCAATTCTGTCCTAAA-CAACCAGCCAGTCGAGT-TTTGCAAATTGAAGCGGTGAGG-AAT-CTTCTCTCAACTCTCCTATGTAAACTACATTGAT-TACATAC-TTTATTTTTTATAATTTCCAAGCAATAGTATGATATTTCGCAATCCC---AAACTGCATTAAAT---TATGTG-AGTA-ATAATTGAGATAATGCTtccgta
gi|9 : TTTTAAACAAGCACAAACTACCAACTTTTGAAATTCTGTCCTAAAACTGCTTGTCAGTCATTT-TTTGTGAATTGAATCAATGAAGCAATTCTTTAATCAACTCTCCTAAATTAATAAC-TCGAAGTTTATAC-TTTATATATTATTTT---GATGCAATAATAAGATATCTTTCTATCCCCAAGAACTGCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTGTTGTCGGAGACATAAACTCAAACATATTTGTTTTTGGA
Alignments
lowQualScore : 111 111111 111111 11 1111 2 777777777 1 555555555555 2222 1 222
lowQualScore : 1 888 6 55 777 55 777 444444 444444 0 0 1 5 1 6 44 3 1 4 4 1 4 44 4 1 4 0 6 1 0 5 1 6 1 1 2 11 0 5555 5 8 1 1 6 000000000 0 2 0 6 999999999999 8888 7 3 7 3 333 1
lowQualScore : . ... . .. ... .. ... ...... ...... . . . . . . .. . . . . . . .. . . . . . . . . . . . . . .. . .... . . . . . ......... . . . . ............ .... . . . . ... .
lowQualScore : 1 888 3 55 000 55 000 444444 444444 4 2 1 0 0 7 33 0 1 4 8 7 8 66 4 0 4 4 5 4 1 7 7 7 4 4 5 88 7 4444 6 0 4 0 7 000000000 2 5 0 7 777777777777 3333 3 7 3 3 333 0
consensus : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAAC---GAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
Reference ( family-2022 ) : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAACTCAGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
gi|1 : CACTGTCGTGATCGAGCTCCGGTACGTCCTTTTTTT--GAACCGGCACAGA--CTA---CCCAAGATGGCGGACGATAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAATTGTGATTATGCAACAAATATGGCGTAA------ATAT------TCGAATGCTTT-TTGGTGTGAA-TTCGGAATAGGTT-GAAGAAGTACCCGCACTTAAAGTTTTATCAACAAAAGAAGTGT-AACTGTTAAAATTCTGTTCTAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAAGTCTCCCAAGTAAACTACATCGAC-TACATAT-TTTATTTTTTATATTTTCGATGCAATAATATAATATCTCGCAATCCCCGAAAACTGCATTAAAT---AATATGAGGTA-ATAATTGAGATATTGCTATTTTTATTGAAAATAAAATTTGGAAAAGGCACCGGCACAGCGGGTATA-TTTGCGCTTATTTTTTAATTCA-------AAACAGTAGAATTCAACGGCACAGTAATTATAAA-TGTCAACGGCACATT-AG------------AAAA----TAT--TTCCGT--AAGTACTATGA---A
gi|10 : aTCGTGGTCGAGTTCCGGCACATTCATTTTTG--GAAATGGCACATATGCTACGGCCTAAGTCGGCGGACCCTTGAAATGCT--CCAAGG-AGATGGCTAC---TTGCAAATA-GATTATGTGACAAATATGGGATAA------ATCTTTGTTGTCAAACGTTTCGTTCATATGCATTTCGGaatatctgaaatatatttgaataca
gi|11 : CACACTTTTATTTTTATTCATACATGACGTGT-GACTGTTGAAATTATGTCCTTGA-----CGGTTGGTCGATTGTTTTCAAATCGAAGCCGTGTAGCAATTATTTTCTCAGCTCGTCTGCGTA
gi|12 : CGCTGACATGATGGAGCACCAGCACATCCTTTTTT----AACATGCATA-A--CTA---CTAAAGTTGGCGGACATGAAAAGTGTT--CAAAGGTGTCTGTTTATTTGTAATAAGTGTAATTATGCGACAAtattt
gi|13 : TTTT--GAACCGACACAAA--TTT---CCGAAGATGGCGGACGCTAAAAATGCTGGAAAACGTAGGTGGTTAC---TAACAAGTGGGATTATGCAATAAATACGca
gi|14 : cttttcagATTGTCGTGATCGAGCTCCGGCACATCCTTTATTG--GAACCGGCATAGA--CTA---CCCAAGATGGCGGACGATAACACTGTC--CAAAGGTAGGTGGTTAC---TAA
gi|15 : CACTGTCGTGATAAATCTCCGGTACGTGCTTTTTTTTGGATCCGGCACATA--CTA---CCCAAGATAGTGAACGCTAAAAGTGCT--CAAAGGCAGGTGGTT
gi|16 : tGGTAGGTGGTTAC---TAACAAGTGTGATCATGTGACAAATACTGCGTAA------ATCT------TCAGATGCTTTATTAATGTGAA-
gi|17 : CTGTCGTGATCGAACTCCGAC-----------TT--GGA---------A--CTA---CCCAAGATGACTGACGCT-AAGATACT--TGAAGGT
gi|19 : TGTCTACGGCACAGTTGCCCACAA-TGTTAACGATATAT
gi|2 : CAAGTGTCATTATACGATAAATATGGCGTAA------ATCT------GCATATGCATTGTTGATGCGAC-TTCGGCTTAGGTT-GAAGAAGTTCCCGCACTTTTATTTTTATCCACACATGAAATGT-AAC--TTCAGATTCTGTT---AAACAGCGGGTTAGTCGAAT-TTTTCAACTCGAAGCGGTGAAGCAATTCTTT-------TCTCCTGAGTATATTCCGCCGAA-TATATAC-TTTATTTATTATTTTTCTGATGTAATAGTGTGATATCTCTAAATCCCC-AAAACCGTATTTACTTAATATGTACAGTA-GAAATTGAGATATTGCTGTTTTTCTGGAAAATAAAAATCGGAAACGTCAACGGCACAGCTGTGATAGTTTGTGCCTATTTTCAAAC---GAG---TAAACAATTGATGTTTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCGGAAT-----AAATAAAAAAAGAATACATTTTTTAAAAC-GTATTATATATTATTCTATATCAGACA
gi|3 : TTTTCTATACAATAGCACGATATCTCTCAATCTC-GAAAAACGCATTGAAA---TATGTGAACTAGAAAATGGAGGGAATGCTGCTTTTCTGAAATATAAAAATCGGAAAAGTCAACAGCACAGCTGTGATATTTTGCGCTTATTTTCAAAC---AAGTTATAAACAATTGATATCTATGGCA-AATTGCTCAAAATTGCCAACAGCACATTCAG--TTTAAAAAACAAAA----TATACATCCATTAAAAT-CTATGA---ATTATTCCATTTCGAACAcccgatatccgttattaatctctttttttctaaatacagttatatattatgaaaattagtat
gi|4 : ACTGTTGTGATCGAGCTCCGGCACGTCCTTTTTG---GAACCGACACAGA--CTA---CCGAAGATGGCGGATGATAAAAATCCG--CAAAGGAAAGAGGTTAC---TAACAATAGTGATTATACGACCACTATGGCGTAA------ATAT------TCAGATGCTTTGTTGGTGTGAA-TTTTGAATAGATT-GAA-AAGTACCCGCACTTACAATTTTATCAACACACAAAGTGT-AACAGTTGCAATTCTGTTCTATATCAGCCAGTAAGTCGATT-TTTGTCAATTGATGCGGTGAGGCAATTCTTT----AAAT------AGTAAACTGCACTGAA-CAAAGACATTTATTtcgaatatccgttatgactcatatttctttctttgatacagttgatatattacgaaaataaatatc
gi|5 : GTTAC---TAATAATAGTGATTATGCGACAACTATAGCGTAACTACATGTAT------TTGGATGCTTTGTTGGTGTGAA-TTCGGAATAGGCT-GAAGAAGTACCCGCACTTACAATTTTTTCAACACACGAAATGT-AACTGTCGCAATTCTGTCCAAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAGGTGATTCTTTTCTCAATTCTCCCAAGTAAACTACATCG-A-TAAATAC-TTTA-TTTTTATTTTTTTGATGTAACAGTATACTGTCTCGCAATTCCCGAACACTGCATTAAAA---TCTTTGAAGTA-ATAAT
gi|6 : CACTGCCATTATCGAACTCGGGCACATCCTTTTTG---GAACTTGCACGCA--CTA---TCCAAGATGGCAGAAGCTAAAAATGAT--AAAAGTTAGGTGGTTAC---TAACAGGTGTGATAATGCGACGAACATGGCGTTA------ATCT------ATAAATGCTTTGC-----TGAA-CTCGGCATAGGTT-GAAGAAGTATC--------------TATCCACACATGAAGTGT-AAC--TTGCTATTCTATTGTAAAACAGCCAGTCAGTTGAGT-TTTGAAAATTGAATTGGTGAAGCAATACTTTTCTTAACTCTCTTAAGTAAAGTACATTGAA-TAC
gi|7 : tCCGACACATA--CTA---CCCAAGATTGCTGACGCTGAAAAT------AATGGTAGGTGGGTAC---TAACAAGTATGATTATGCGACGAA-ATGGCGTAT------ATCT------TCAGATGC---ATCGACGTGAA-CTCGGCATAGGATAGAAGTAGTACACACACTTATAATTTTATCCACACATGAAGTAT-AACTGTTGAAATCATGTACTCAAACAGC---TC-CTCGATT-TTTGTAAAGTGAA
gi|8 : GTGC-ATCTGTTGCAATTCTGTCCTAAA-CAACCAGCCAGTCGAGT-TTTGCAAATTGAAGCGGTGAGG-AAT-CTTCTCTCAACTCTCCTATGTAAACTACATTGAT-TACATAC-TTTATTTTTTATAATTTCCAAGCAATAGTATGATATTTCGCAATCCC---AAACTGCATTAAAT---TATGTG-AGTA-ATAATTGAGATAATGCTtccgta
gi|9 : TTTTAAACAAGCACAAACTACCAACTTTTGAAATTCTGTCCTAAAACTGCTTGTCAGTCATTT-TTTGTGAATTGAATCAATGAAGCAATTCTTTAATCAACTCTCCTAAATTAATAAC-TCGAAGTTTATAC-TTTATATATTATTTT---GATGCAATAATAAGATATCTTTCTATCCCCAAGAACTGCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTGTTGTCGGAGACATAAACTCAAACATATTTGTTTTTGGA
Alignments
lowQualScore : 111 111111 111111 11 1111 2 333333333 1 555555555555 2222 1 222
lowQualScore : 1 888 6 55 777 55 777 444444 444444 0 0 1 5 1 6 44 3 1 4 4 1 4 44 4 1 4 0 6 1 0 5 1 6 1 1 2 11 0 5555 5 8 1 1 6 888888888 0 2 0 6 999999999999 8888 7 3 7 3 333 1
lowQualScore : . ... . .. ... .. ... ...... ...... . . . . . . .. . . . . . . .. . . . . . . . . . . . . . .. . .... . . . . . ......... . . . . ............ .... . . . . ... .
lowQualScore : 1 888 3 55 000 55 000 444444 444444 4 2 1 0 0 7 33 0 1 4 8 7 8 66 4 0 4 4 5 4 1 7 7 7 4 4 5 88 7 4444 6 0 4 0 7 000000000 2 5 0 7 777777777777 3333 3 7 3 3 333 0
consensus : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
Reference ( family-2022 ) : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
gi|1 : CACTGTCGTGATCGAGCTCCGGTACGTCCTTTTTTT--GAACCGGCACAGA--CTA---CCCAAGATGGCGGACGATAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAATTGTGATTATGCAACAAATATGGCGTAA------ATAT------TCGAATGCTTT-TTGGTGTGAA-TTCGGAATAGGTT-GAAGAAGTACCCGCACTTAAAGTTTTATCAACAAAAGAAGTGT-AACTGTTAAAATTCTGTTCTAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAAGTCTCCCAAGTAAACTACATCGAC-TACATAT-TTTATTTTTTATATTTTCGATGCAATAATATAATATCTCGCAATCCCCGAAAACTGCATTAAAT---AATATGAGGTA-ATAATTGAGATATTGCTATTTTTATTGAAAATAAAATTTGGAAAAGGCACCGGCACAGCGGGTATA-TTTGCGCTTATTTTTTAATTCA------AAACAGTAGAATTCAACGGCACAGTAATTATAAA-TGTCAACGGCACATT-AG------------AAAA----TAT--TTCCGT--AAGTACTATGA---A
gi|10 : aTCGTGGTCGAGTTCCGGCACATTCATTTTTG--GAAATGGCACATATGCTACGGCCTAAGTCGGCGGACCCTTGAAATGCT--CCAAGG-AGATGGCTAC---TTGCAAATA-GATTATGTGACAAATATGGGATAA------ATCTTTGTTGTCAAACGTTTCGTTCATATGCATTTCGGaatatctgaaatatatttgaataca
gi|11 : CACACTTTTATTTTTATTCATACATGACGTGT-GACTGTTGAAATTATGTCCTTGA-----CGGTTGGTCGATTGTTTTCAAATCGAAGCCGTGTAGCAATTATTTTCTCAGCTCGTCTGCGTA
gi|12 : CGCTGACATGATGGAGCACCAGCACATCCTTTTTT----AACATGCATA-A--CTA---CTAAAGTTGGCGGACATGAAAAGTGTT--CAAAGGTGTCTGTTTATTTGTAATAAGTGTAATTATGCGACAAtattt
gi|13 : TTTT--GAACCGACACAAA--TTT---CCGAAGATGGCGGACGCTAAAAATGCTGGAAAACGTAGGTGGTTAC---TAACAAGTGGGATTATGCAATAAATACGca
gi|14 : cttttcagATTGTCGTGATCGAGCTCCGGCACATCCTTTATTG--GAACCGGCATAGA--CTA---CCCAAGATGGCGGACGATAACACTGTC--CAAAGGTAGGTGGTTAC---TAA
gi|15 : CACTGTCGTGATAAATCTCCGGTACGTGCTTTTTTTTGGATCCGGCACATA--CTA---CCCAAGATAGTGAACGCTAAAAGTGCT--CAAAGGCAGGTGGTT
gi|16 : tGGTAGGTGGTTAC---TAACAAGTGTGATCATGTGACAAATACTGCGTAA------ATCT------TCAGATGCTTTATTAATGTGAA-
gi|17 : CTGTCGTGATCGAACTCCGAC-----------TT--GGA---------A--CTA---CCCAAGATGACTGACGCT-AAGATACT--TGAAGGT
gi|19 : TGTCTACGGCACAGTTGCCCACAA-TGTTAACGATATAT
gi|2 : CAAGTGTCATTATACGATAAATATGGCGTAA------ATCT------GCATATGCATTGTTGATGCGAC-TTCGGCTTAGGTT-GAAGAAGTTCCCGCACTTTTATTTTTATCCACACATGAAATGT-AAC--TTCAGATTCTGTT---AAACAGCGGGTTAGTCGAAT-TTTTCAACTCGAAGCGGTGAAGCAATTCTTT-------TCTCCTGAGTATATTCCGCCGAA-TATATAC-TTTATTTATTATTTTTCTGATGTAATAGTGTGATATCTCTAAATCCCC-AAAACCGTATTTACTTAATATGTACAGTA-GAAATTGAGATATTGCTGTTTTTCTGGAAAATAAAAATCGGAAACGTCAACGGCACAGCTGTGATAGTTTGTGCCTATTTTCAAA--CGAG---TAAACAATTGATGTTTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCGGAAT-----AAATAAAAAAAGAATACATTTTTTAAAAC-GTATTATATATTATTCTATATCAGACA
gi|3 : TTTTCTATACAATAGCACGATATCTCTCAATCTC-GAAAAACGCATTGAAA---TATGTGAACTAGAAAATGGAGGGAATGCTGCTTTTCTGAAATATAAAAATCGGAAAAGTCAACAGCACAGCTGTGATATTTTGCGCTTATTTTCAAA--CAAGTTATAAACAATTGATATCTATGGCA-AATTGCTCAAAATTGCCAACAGCACATTCAG--TTTAAAAAACAAAA----TATACATCCATTAAAAT-CTATGA---ATTATTCCATTTCGAACAcccgatatccgttattaatctctttttttctaaatacagttatatattatgaaaattagtat
gi|4 : ACTGTTGTGATCGAGCTCCGGCACGTCCTTTTTG---GAACCGACACAGA--CTA---CCGAAGATGGCGGATGATAAAAATCCG--CAAAGGAAAGAGGTTAC---TAACAATAGTGATTATACGACCACTATGGCGTAA------ATAT------TCAGATGCTTTGTTGGTGTGAA-TTTTGAATAGATT-GAA-AAGTACCCGCACTTACAATTTTATCAACACACAAAGTGT-AACAGTTGCAATTCTGTTCTATATCAGCCAGTAAGTCGATT-TTTGTCAATTGATGCGGTGAGGCAATTCTTT----AAAT------AGTAAACTGCACTGAA-CAAAGACATTTATTtcgaatatccgttatgactcatatttctttctttgatacagttgatatattacgaaaataaatatc
gi|5 : GTTAC---TAATAATAGTGATTATGCGACAACTATAGCGTAACTACATGTAT------TTGGATGCTTTGTTGGTGTGAA-TTCGGAATAGGCT-GAAGAAGTACCCGCACTTACAATTTTTTCAACACACGAAATGT-AACTGTCGCAATTCTGTCCAAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAGGTGATTCTTTTCTCAATTCTCCCAAGTAAACTACATCG-A-TAAATAC-TTTA-TTTTTATTTTTTTGATGTAACAGTATACTGTCTCGCAATTCCCGAACACTGCATTAAAA---TCTTTGAAGTA-ATAAT
gi|6 : CACTGCCATTATCGAACTCGGGCACATCCTTTTTG---GAACTTGCACGCA--CTA---TCCAAGATGGCAGAAGCTAAAAATGAT--AAAAGTTAGGTGGTTAC---TAACAGGTGTGATAATGCGACGAACATGGCGTTA------ATCT------ATAAATGCTTTGC-----TGAA-CTCGGCATAGGTT-GAAGAAGTATC--------------TATCCACACATGAAGTGT-AAC--TTGCTATTCTATTGTAAAACAGCCAGTCAGTTGAGT-TTTGAAAATTGAATTGGTGAAGCAATACTTTTCTTAACTCTCTTAAGTAAAGTACATTGAA-TAC
gi|7 : tCCGACACATA--CTA---CCCAAGATTGCTGACGCTGAAAAT------AATGGTAGGTGGGTAC---TAACAAGTATGATTATGCGACGAA-ATGGCGTAT------ATCT------TCAGATGC---ATCGACGTGAA-CTCGGCATAGGATAGAAGTAGTACACACACTTATAATTTTATCCACACATGAAGTAT-AACTGTTGAAATCATGTACTCAAACAGC---TC-CTCGATT-TTTGTAAAGTGAA
gi|8 : GTGC-ATCTGTTGCAATTCTGTCCTAAA-CAACCAGCCAGTCGAGT-TTTGCAAATTGAAGCGGTGAGG-AAT-CTTCTCTCAACTCTCCTATGTAAACTACATTGAT-TACATAC-TTTATTTTTTATAATTTCCAAGCAATAGTATGATATTTCGCAATCCC---AAACTGCATTAAAT---TATGTG-AGTA-ATAATTGAGATAATGCTtccgta
gi|9 : TTTTAAACAAGCACAAACTACCAACTTTTGAAATTCTGTCCTAAAACTGCTTGTCAGTCATTT-TTTGTGAATTGAATCAATGAAGCAATTCTTTAATCAACTCTCCTAAATTAATAAC-TCGAAGTTTATAC-TTTATATATTATTTT---GATGCAATAATAAGATATCTTTCTATCCCCAAGAACTGCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTGTTGTCGGAGACATAAACTCAAACATATTTGTTTTTGGA
Alignments
lowQualScore : 111 111111 111111 11 1111 2 333333333 1 555555555555 2222 1 222
lowQualScore : 1 888 6 55 777 55 777 444444 444444 0 0 1 5 1 6 44 3 1 4 4 1 4 44 4 1 4 0 6 1 0 5 1 6 1 1 2 11 0 5555 5 8 1 1 6 888888888 0 2 0 6 999999999999 8888 7 3 7 3 333 1
lowQualScore : . ... . .. ... .. ... ...... ...... . . . . . . .. . . . . . . .. . . . . . . . . . . . . . .. . .... . . . . . ......... . . . . ............ .... . . . . ... .
lowQualScore : 1 888 3 55 000 55 000 444444 444444 4 2 1 0 0 7 33 0 1 4 8 7 8 66 4 0 4 4 5 4 1 7 7 7 4 4 5 88 7 4444 6 0 4 0 7 000000000 2 5 0 7 777777777777 3333 3 7 3 3 333 0
consensus : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
Reference ( family-2022 ) : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
gi|1 : CACTGTCGTGATCGAGCTCCGGTACGTCCTTTTTTT--GAACCGGCACAGA--CTA---CCCAAGATGGCGGACGATAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAATTGTGATTATGCAACAAATATGGCGTAA------ATAT------TCGAATGCTTT-TTGGTGTGAA-TTCGGAATAGGTT-GAAGAAGTACCCGCACTTAAAGTTTTATCAACAAAAGAAGTGT-AACTGTTAAAATTCTGTTCTAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAAGTCTCCCAAGTAAACTACATCGAC-TACATAT-TTTATTTTTTATATTTTCGATGCAATAATATAATATCTCGCAATCCCCGAAAACTGCATTAAAT---AATATGAGGTA-ATAATTGAGATATTGCTATTTTTATTGAAAATAAAATTTGGAAAAGGCACCGGCACAGCGGGTATA-TTTGCGCTTATTTTTTAATTCA------AAACAGTAGAATTCAACGGCACAGTAATTATAAA-TGTCAACGGCACATT-AG------------AAAA----TAT--TTCCGT--AAGTACTATGA---A
gi|10 : aTCGTGGTCGAGTTCCGGCACATTCATTTTTG--GAAATGGCACATATGCTACGGCCTAAGTCGGCGGACCCTTGAAATGCT--CCAAGG-AGATGGCTAC---TTGCAAATA-GATTATGTGACAAATATGGGATAA------ATCTTTGTTGTCAAACGTTTCGTTCATATGCATTTCGGaatatctgaaatatatttgaataca
gi|11 : CACACTTTTATTTTTATTCATACATGACGTGT-GACTGTTGAAATTATGTCCTTGA-----CGGTTGGTCGATTGTTTTCAAATCGAAGCCGTGTAGCAATTATTTTCTCAGCTCGTCTGCGTA
gi|12 : CGCTGACATGATGGAGCACCAGCACATCCTTTTTT----AACATGCATA-A--CTA---CTAAAGTTGGCGGACATGAAAAGTGTT--CAAAGGTGTCTGTTTATTTGTAATAAGTGTAATTATGCGACAAtattt
gi|13 : TTTT--GAACCGACACAAA--TTT---CCGAAGATGGCGGACGCTAAAAATGCTGGAAAACGTAGGTGGTTAC---TAACAAGTGGGATTATGCAATAAATACGca
gi|14 : cttttcagATTGTCGTGATCGAGCTCCGGCACATCCTTTATTG--GAACCGGCATAGA--CTA---CCCAAGATGGCGGACGATAACACTGTC--CAAAGGTAGGTGGTTAC---TAA
gi|15 : CACTGTCGTGATAAATCTCCGGTACGTGCTTTTTTTTGGATCCGGCACATA--CTA---CCCAAGATAGTGAACGCTAAAAGTGCT--CAAAGGCAGGTGGTT
gi|16 : tGGTAGGTGGTTAC---TAACAAGTGTGATCATGTGACAAATACTGCGTAA------ATCT------TCAGATGCTTTATTAATGTGAA-
gi|17 : CTGTCGTGATCGAACTCCGAC-----------TT--GGA---------A--CTA---CCCAAGATGACTGACGCT-AAGATACT--TGAAGGT
gi|19 : TGTCTACGGCACAGTTGCCCACAA-TGTTAACGATATAT
gi|2 : CAAGTGTCATTATACGATAAATATGGCGTAA------ATCT------GCATATGCATTGTTGATGCGAC-TTCGGCTTAGGTT-GAAGAAGTTCCCGCACTTTTATTTTTATCCACACATGAAATGT-AAC--TTCAGATTCTGTT---AAACAGCGGGTTAGTCGAAT-TTTTCAACTCGAAGCGGTGAAGCAATTCTTT-------TCTCCTGAGTATATTCCGCCGAA-TATATAC-TTTATTTATTATTTTTCTGATGTAATAGTGTGATATCTCTAAATCCCC-AAAACCGTATTTACTTAATATGTACAGTA-GAAATTGAGATATTGCTGTTTTTCTGGAAAATAAAAATCGGAAACGTCAACGGCACAGCTGTGATAGTTTGTGCCTATTTTCAAA--CGAG---TAAACAATTGATGTTTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCGGAAT-----AAATAAAAAAAGAATACATTTTTTAAAAC-GTATTATATATTATTCTATATCAGACA
gi|3 : TTTTCTATACAATAGCACGATATCTCTCAATCTC-GAAAAACGCATTGAAA---TATGTGAACTAGAAAATGGAGGGAATGCTGCTTTTCTGAAATATAAAAATCGGAAAAGTCAACAGCACAGCTGTGATATTTTGCGCTTATTTTCAAA--CAAGTTATAAACAATTGATATCTATGGCA-AATTGCTCAAAATTGCCAACAGCACATTCAG--TTTAAAAAACAAAA----TATACATCCATTAAAAT-CTATGA---ATTATTCCATTTCGAACAcccgatatccgttattaatctctttttttctaaatacagttatatattatgaaaattagtat
gi|4 : ACTGTTGTGATCGAGCTCCGGCACGTCCTTTTTG---GAACCGACACAGA--CTA---CCGAAGATGGCGGATGATAAAAATCCG--CAAAGGAAAGAGGTTAC---TAACAATAGTGATTATACGACCACTATGGCGTAA------ATAT------TCAGATGCTTTGTTGGTGTGAA-TTTTGAATAGATT-GAA-AAGTACCCGCACTTACAATTTTATCAACACACAAAGTGT-AACAGTTGCAATTCTGTTCTATATCAGCCAGTAAGTCGATT-TTTGTCAATTGATGCGGTGAGGCAATTCTTT----AAAT------AGTAAACTGCACTGAA-CAAAGACATTTATTtcgaatatccgttatgactcatatttctttctttgatacagttgatatattacgaaaataaatatc
gi|5 : GTTAC---TAATAATAGTGATTATGCGACAACTATAGCGTAACTACATGTAT------TTGGATGCTTTGTTGGTGTGAA-TTCGGAATAGGCT-GAAGAAGTACCCGCACTTACAATTTTTTCAACACACGAAATGT-AACTGTCGCAATTCTGTCCAAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAGGTGATTCTTTTCTCAATTCTCCCAAGTAAACTACATCG-A-TAAATAC-TTTA-TTTTTATTTTTTTGATGTAACAGTATACTGTCTCGCAATTCCCGAACACTGCATTAAAA---TCTTTGAAGTA-ATAAT
gi|6 : CACTGCCATTATCGAACTCGGGCACATCCTTTTTG---GAACTTGCACGCA--CTA---TCCAAGATGGCAGAAGCTAAAAATGAT--AAAAGTTAGGTGGTTAC---TAACAGGTGTGATAATGCGACGAACATGGCGTTA------ATCT------ATAAATGCTTTGC-----TGAA-CTCGGCATAGGTT-GAAGAAGTATC--------------TATCCACACATGAAGTGT-AAC--TTGCTATTCTATTGTAAAACAGCCAGTCAGTTGAGT-TTTGAAAATTGAATTGGTGAAGCAATACTTTTCTTAACTCTCTTAAGTAAAGTACATTGAA-TAC
gi|7 : tCCGACACATA--CTA---CCCAAGATTGCTGACGCTGAAAAT------AATGGTAGGTGGGTAC---TAACAAGTATGATTATGCGACGAA-ATGGCGTAT------ATCT------TCAGATGC---ATCGACGTGAA-CTCGGCATAGGATAGAAGTAGTACACACACTTATAATTTTATCCACACATGAAGTAT-AACTGTTGAAATCATGTACTCAAACAGC---TC-CTCGATT-TTTGTAAAGTGAA
gi|8 : GTGC-ATCTGTTGCAATTCTGTCCTAAA-CAACCAGCCAGTCGAGT-TTTGCAAATTGAAGCGGTGAGG-AAT-CTTCTCTCAACTCTCCTATGTAAACTACATTGAT-TACATAC-TTTATTTTTTATAATTTCCAAGCAATAGTATGATATTTCGCAATCCC---AAACTGCATTAAAT---TATGTG-AGTA-ATAATTGAGATAATGCTtccgta
gi|9 : TTTTAAACAAGCACAAACTACCAACTTTTGAAATTCTGTCCTAAAACTGCTTGTCAGTCATTT-TTTGTGAATTGAATCAATGAAGCAATTCTTTAATCAACTCTCCTAAATTAATAAC-TCGAAGTTTATAC-TTTATATATTATTTT---GATGCAATAATAAGATATCTTTCTATCCCCAAGAACTGCA
blockSeqs : A TTG T TG CGG GG TTG CTACAT TTGTTG A T C A TT T T C T A A CG G T G T C G T A A T T CG TTAA C G A T G CAAGTTA C T C TTTAAAAAAC AAAG A T T . TAT T
blockSeqs : A G A . . . . . . A . A . TT T T . A A T GG A A . T A . A . T T T CA A A . A A T CGAG C . C AATAAAT . A A T . .
blockSeqs : A T G . . . . . . A . A . AC A C . T C A CA A T . T T . A . T A G C A A . T A . .
blockSeqs : G G T . . . . . . G . C . AC A C . T C A CA G A . T C . C . A T G G T . . T
blockSeqs : G T G . . . . . . G . C . AT A T . T C A CA A G . A C . C . T .
blockSeqs : A . C . . . . . . A . . . T . T A A CA A T . . C . T
blockSeqs : . . T . . . . . . . . C . . C . TT A G . . .
blockSeqs : . . . . . . . . A . . . T .
blockSeqs : . . . . .
blockSeqCons : CG
originalCons : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
finalCons : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTGTTGTCGGAGACATAAACTCAAACATATTTGTTTTTGGA
Alignments
lowQualScore : 111 111111 111111 11 1111 2 333333333 1 555555555555 2222 1 222
lowQualScore : 1 888 6 55 777 55 777 444444 444444 0 0 1 5 1 6 44 3 1 4 4 1 4 44 4 1 4 0 6 1 0 5 1 6 1 1 2 11 0 5555 5 8 1 1 6 888888888 0 2 0 6 999999999999 8888 7 3 7 3 333 1
lowQualScore : . ... . .. ... .. ... ...... ...... . . . . . . .. . . . . . . .. . . . . . . . . . . . . . .. . .... . . . . . ......... . . . . ............ .... . . . . ... .
lowQualScore : 1 888 3 55 000 55 000 444444 444444 4 2 1 0 0 7 33 0 1 4 8 7 8 66 4 0 4 4 5 4 1 7 7 7 4 4 5 88 7 4444 6 0 4 0 7 000000000 2 5 0 7 777777777777 3333 3 7 3 3 333 0
consensus : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
Reference ( family-2022 ) : NCACTGTCGTGATCGAGCTCCGGCACGTCCTTTTTTT--GAACCGGCACANA--CTA---CCCAAGATGGCGGACGCTAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAAGTGTGATTATGCGACAAATATGGCGTAA------ATCT------TCAGATGCTTTGTTGGTGTGAA-TTCGGNATAGGTT-GAAGAAGTACCCGCACTTATANTTTTATCCACACACGAAGTGT-AACTGTTGAAATTCTGTCCTAAAACAGCCGGTCGGTCGANT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAACTCTCCTAAGTAAACTACATCGAA-TACATAC-TTTATTTTTTATTTTTTCGATGCAATAGTATGATATCTCGCAATCCCCGAAAACCGCATTAAAT---TATGTGAAGTA-ATAATTGAGATANTGCTGTTTTTCTGGAAAATAAAAATCGGAAAAGTCAACGGCACAGCTGTGATA-TTTGCGCTTATTTTCAAA--CGAG---TAAACAATTGATGTCTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCAG--T-----AAACAAAA----TATACATCCGTTAAAAT-CTATGA---ATTATTCCATNTCGGACA
gi|1 : CACTGTCGTGATCGAGCTCCGGTACGTCCTTTTTTT--GAACCGGCACAGA--CTA---CCCAAGATGGCGGACGATAAAAATGCT--CAAAGGTAGGTGGTTAC---TAACAATTGTGATTATGCAACAAATATGGCGTAA------ATAT------TCGAATGCTTT-TTGGTGTGAA-TTCGGAATAGGTT-GAAGAAGTACCCGCACTTAAAGTTTTATCAACAAAAGAAGTGT-AACTGTTAAAATTCTGTTCTAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAAGCAATTCTTTTCTCAAGTCTCCCAAGTAAACTACATCGAC-TACATAT-TTTATTTTTTATATTTTCGATGCAATAATATAATATCTCGCAATCCCCGAAAACTGCATTAAAT---AATATGAGGTA-ATAATTGAGATATTGCTATTTTTATTGAAAATAAAATTTGGAAAAGGCACCGGCACAGCGGGTATA-TTTGCGCTTATTTTTTAATTCA------AAACAGTAGAATTCAACGGCACAGTAATTATAAA-TGTCAACGGCACATT-AG------------AAAA----TAT--TTCCGT--AAGTACTATGA---A
gi|10 : aTCGTGGTCGAGTTCCGGCACATTCATTTTTG--GAAATGGCACATATGCTACGGCCTAAGTCGGCGGACCCTTGAAATGCT--CCAAGG-AGATGGCTAC---TTGCAAATA-GATTATGTGACAAATATGGGATAA------ATCTTTGTTGTCAAACGTTTCGTTCATATGCATTTCGGaatatctgaaatatatttgaataca
gi|11 : CACACTTTTATTTTTATTCATACATGACGTGT-GACTGTTGAAATTATGTCCTTGA-----CGGTTGGTCGATTGTTTTCAAATCGAAGCCGTGTAGCAATTATTTTCTCAGCTCGTCTGCGTA
gi|12 : CGCTGACATGATGGAGCACCAGCACATCCTTTTTT----AACATGCATA-A--CTA---CTAAAGTTGGCGGACATGAAAAGTGTT--CAAAGGTGTCTGTTTATTTGTAATAAGTGTAATTATGCGACAAtattt
gi|13 : TTTT--GAACCGACACAAA--TTT---CCGAAGATGGCGGACGCTAAAAATGCTGGAAAACGTAGGTGGTTAC---TAACAAGTGGGATTATGCAATAAATACGca
gi|14 : cttttcagATTGTCGTGATCGAGCTCCGGCACATCCTTTATTG--GAACCGGCATAGA--CTA---CCCAAGATGGCGGACGATAACACTGTC--CAAAGGTAGGTGGTTAC---TAA
gi|15 : CACTGTCGTGATAAATCTCCGGTACGTGCTTTTTTTTGGATCCGGCACATA--CTA---CCCAAGATAGTGAACGCTAAAAGTGCT--CAAAGGCAGGTGGTT
gi|16 : tGGTAGGTGGTTAC---TAACAAGTGTGATCATGTGACAAATACTGCGTAA------ATCT------TCAGATGCTTTATTAATGTGAA-
gi|17 : CTGTCGTGATCGAACTCCGAC-----------TT--GGA---------A--CTA---CCCAAGATGACTGACGCT-AAGATACT--TGAAGGT
gi|19 : TGTCTACGGCACAGTTGCCCACAA-TGTTAACGATATAT
gi|2 : CAAGTGTCATTATACGATAAATATGGCGTAA------ATCT------GCATATGCATTGTTGATGCGAC-TTCGGCTTAGGTT-GAAGAAGTTCCCGCACTTTTATTTTTATCCACACATGAAATGT-AAC--TTCAGATTCTGTT---AAACAGCGGGTTAGTCGAAT-TTTTCAACTCGAAGCGGTGAAGCAATTCTTT-------TCTCCTGAGTATATTCCGCCGAA-TATATAC-TTTATTTATTATTTTTCTGATGTAATAGTGTGATATCTCTAAATCCCC-AAAACCGTATTTACTTAATATGTACAGTA-GAAATTGAGATATTGCTGTTTTTCTGGAAAATAAAAATCGGAAACGTCAACGGCACAGCTGTGATAGTTTGTGCCTATTTTCAAA--CGAG---TAAACAATTGATGTTTACGGCACAGTTGCCCAAAA-TGTCAACGGCACATTCGGAAT-----AAATAAAAAAAGAATACATTTTTTAAAAC-GTATTATATATTATTCTATATCAGACA
gi|3 : TTTTCTATACAATAGCACGATATCTCTCAATCTC-GAAAAACGCATTGAAA---TATGTGAACTAGAAAATGGAGGGAATGCTGCTTTTCTGAAATATAAAAATCGGAAAAGTCAACAGCACAGCTGTGATATTTTGCGCTTATTTTCAAA--CAAGTTATAAACAATTGATATCTATGGCA-AATTGCTCAAAATTGCCAACAGCACATTCAG--TTTAAAAAACAAAA----TATACATCCATTAAAAT-CTATGA---ATTATTCCATTTCGAACAcccgatatccgttattaatctctttttttctaaatacagttatatattatgaaaattagtat
gi|4 : ACTGTTGTGATCGAGCTCCGGCACGTCCTTTTTG---GAACCGACACAGA--CTA---CCGAAGATGGCGGATGATAAAAATCCG--CAAAGGAAAGAGGTTAC---TAACAATAGTGATTATACGACCACTATGGCGTAA------ATAT------TCAGATGCTTTGTTGGTGTGAA-TTTTGAATAGATT-GAA-AAGTACCCGCACTTACAATTTTATCAACACACAAAGTGT-AACAGTTGCAATTCTGTTCTATATCAGCCAGTAAGTCGATT-TTTGTCAATTGATGCGGTGAGGCAATTCTTT----AAAT------AGTAAACTGCACTGAA-CAAAGACATTTATTtcgaatatccgttatgactcatatttctttctttgatacagttgatatattacgaaaataaatatc
gi|5 : GTTAC---TAATAATAGTGATTATGCGACAACTATAGCGTAACTACATGTAT------TTGGATGCTTTGTTGGTGTGAA-TTCGGAATAGGCT-GAAGAAGTACCCGCACTTACAATTTTTTCAACACACGAAATGT-AACTGTCGCAATTCTGTCCAAAAACAGCCAGTCGGTCGAAT-TTTGTAAATTGAAGCGGTGAGGTGATTCTTTTCTCAATTCTCCCAAGTAAACTACATCG-A-TAAATAC-TTTA-TTTTTATTTTTTTGATGTAACAGTATACTGTCTCGCAATTCCCGAACACTGCATTAAAA---TCTTTGAAGTA-ATAAT
gi|6 : CACTGCCATTATCGAACTCGGGCACATCCTTTTTG---GAACTTGCACGCA--CTA---TCCAAGATGGCAGAAGCTAAAAATGAT--AAAAGTTAGGTGGTTAC---TAACAGGTGTGATAATGCGACGAACATGGCGTTA------ATCT------ATAAATGCTTTGC-----TGAA-CTCGGCATAGGTT-GAAGAAGTATC--------------TATCCACACATGAAGTGT-AAC--TTGCTATTCTATTGTAAAACAGCCAGTCAGTTGAGT-TTTGAAAATTGAATTGGTGAAGCAATACTTTTCTTAACTCTCTTAAGTAAAGTACATTGAA-TAC
gi|7 : tCCGACACATA--CTA---CCCAAGATTGCTGACGCTGAAAAT------AATGGTAGGTGGGTAC---TAACAAGTATGATTATGCGACGAA-ATGGCGTAT------ATCT------TCAGATGC---ATCGACGTGAA-CTCGGCATAGGATAGAAGTAGTACACACACTTATAATTTTATCCACACATGAAGTAT-AACTGTTGAAATCATGTACTCAAACAGC---TC-CTCGATT-TTTGTAAAGTGAA
gi|8 : GTGC-ATCTGTTGCAATTCTGTCCTAAA-CAACCAGCCAGTCGAGT-TTTGCAAATTGAAGCGGTGAGG-AAT-CTTCTCTCAACTCTCCTATGTAAACTACATTGAT-TACATAC-TTTATTTTTTATAATTTCCAAGCAATAGTATGATATTTCGCAATCCC---AAACTGCATTAAAT---TATGTG-AGTA-ATAATTGAGATAATGCTtccgta
gi|9 : TTTTAAACAAGCACAAACTACCAACTTTTGAAATTCTGTCCTAAAACTGCTTGTCAGTCATTT-TTTGTGAATTGAATCAATGAAGCAATTCTTTAATCAACTCTCCTAAATTAATAAC-TCGAAGTTTATAC-TTTATATATTATTTT---GATGCAATAATAAGATATCTTTCTATCCCCAAGAACTGCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): ATATTTGTTGTCGGAGACATAAACTCAAACATATTTGTTTTTGGA