lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222 1 11 111 11 22222 3 22 333333333333 2222222222 55555555555555555555555555555 1 11 1 4444444444444444444444444444444444444444444444444444444444444 1
lowQualScore : 6 66666666666666666666666666666666666666666666666666666666666666666666666 3 77 5 6 0 11 666 333 66 3 6 5 1 11111 2 6 3 33 55 5 444444444444 1111111111 3 9999 6 1 33333333333333333333333333333 3 2 11 22 3 666 7 5555555555555555555555555555555555555555555555555555555555555 7 6
lowQualScore : . ....................................................................... . .. . . . .. ... ... .. . . . . ..... . . . .. .. . ............ .......... . .... . . ............................. . . .. .. . ... . ............................................................. . .
lowQualScore : 0 00000000000000000000000000000000000000000000000000000000000000000000000 7 33 0 0 8 88 000 666 00 2 4 0 0 77777 2 7 3 00 33 7 222222222222 0000000000 0 6666 7 7 99999999999999999999999999999 5 3 88 44 2 333 0 7777777777777777777777777777777777777777777777777777777777777 0 0
consensus : AAACGG---AACATT--TTTATGAAAATTGTCAACNTTCATATGTTANNT-TTNAC-CAG--AATCCA-C-TAA---GCANGGCGGTAGTGTAATGGATAGAGTGT-TGGACGCTCATGCCAGAGGTTGCGAGTTCGATCCCNNGN-TCGATCCGAT-GGCCTCTCA-AAAA-CAACAC-TCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGATAGCGAT--------TCATATA-----AGCTCTCA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANNNCACATAT-AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
Reference ( gi|2 ) : AAGCGGTACAACATTGGTTTA--AAAGTAG--AACTTTTA---ATTATCT-TTTACCCA---AATCCA-CATAA--AGCAGGGCGGTAGTCTAATGGATAGAGTGT-TGGCCGCTGACGCCAGACGTTGCGGGTTGGATCCCCCGG-TCGACCCGAT-G-CCTCTCATAAAA-CAACAC-TCAGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGAGAGCGAT--------TTATATA-----AGCTTTTA-GCTTTCATCGCAATCGAGCT-AAAAAAAACAAATTAGTATAA-AC---TAAATCCACATATCAATGTCCAGTCATATATTT---ATGAACGTGTAAT-CAT--GATGATATTACTATTTATAACTTCATTTAT
gi|1 : AAACGG---AACATT--TTTATGAAAATTGTCAACGTTTATATGTTACATATTGATACA---AATACAACATAACGAGCATGTCG-CAATGTAGTGGATAG--TGC-CGTCCAATCATGTTATAGGTTGCAAGTTCGATGGCCGGC-TCGATGCGCT-GGCTTCTCA-AAAA-CAACA
gi|14 : aaaaatgacaaacaagatttcacaatatacttgatgtcttttggatcaatatcgttcccgtagtcaagaaatgaagactggatttaggtttaaaatcatttgaataaggttaataccattttcaacacaattttggttatctacgacacatccagttttattggtggagggatacctcaaaatgaatctgagtagaaccaccgttcttccgcaagtaactggcaaactttttcaaattaagttttaggagcaagagagactcgaatcttcgaccttagccggataggtaaatgatcttgagaaggggccttagaccactcggctacaacgaacccataaaaaatatagttttgttgttg--AACCTTCA---ATTTGTT-TTCACCCAGTCAAACCA-TCT-----TCAGGGCAGTAGTGTAATGGATAGAGTG---GGACACTCATGCCAattgta
gi|7 : ATCT-TTT---CAG--AATCT----TAA--TGCTAGGCAGTGGTGCAATGGATAGTG-GTATGGATGCTGGAATCAGATGTTGT-GGTCGCAAACTTAGACTTGATCCGATAG-GTTCTTAT-AAA-CAACAT-TTGGTAca
gi|4 : TGGATGAAGTGT-TGGATACTCAAGCCAG--GT--CAA--TGACTCTTATGC-TCGAACTTAT-GACCTGTC-TAAAT-CAACAC-TCGATACTAGCCATAATACGTGCCCTATAATACAAC-CCATGATACGTACCCTATGGCGATGCG-----TTATA-A-----A--TCTTG-GTTTTCTTCGCAATCGAGCT-GACATAAA--------TATAA-ACTTATAAGGACACATAT
gi|3 : ATACAGTGT-TGGCCTTTCATGCTGGAGGTTGTGAGTATGATCCCCAGC-TTGACCGGAT-GATTTCTCAAAAAAACAATAC-TCAGTTCAGGTT------------CTA--------C-CTAGGAAGCAGACTTGAGAGCAGT--------TCATA------------------TTTCTTGGCAATCAAGCT-----AAAATAAATTAGTATAA-A----TAAA
gi|6 : ctagatgttgcaatcatgaaaaaaatagaaatttaagcatgttggaagaacagcGGGTTCGATCATAGAG-TCGTTTCGAT-GGCCGCACA-AAAA-TAGCACCTCAGTACAGGCT------------TTA--------CTCCAGAAACCA---TCGCTAG------------------------AGCTCTTA-ACTTACTTTGCAAATGATTC-AAAGAAAACAAAATTGTA-AA-Agaatgagtgtgactgttttcatgtgtagaaaactttaatactgaccaatatatctctgagctgtctg
gi|8 : GATCCCACGA-TCGACCCGAT-GGCCTCCCA---------------AGTACTGGTT------------CTA--------C-ACAATTA-CGGACTCAATAGCTATTAACTTGGTTAGATA-----A---TTCA-ATTTTCATC
gi|5 : gccagatcacgaAAG-CAAAAC-TCAATAATGGTT------------CTA--------T-CCAG-------ACTTGACAGCAAA--------TCATATATTTAAAGCTCTAAAGCTCTCTTCGTAATCAAGCT-AAAAAAAA-AAAGTAGTACAATAT---TATTTTTA-A----AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
gi|17 : -CAACAC-TCAGTACTGGTT------------CTA--------T-CCAGGAAG
gi|15 : A--------C-TCAGGAAGCAGATTCAAGAGTGGT--------TCATAT
gi|16 : GCGAT--------TTATAAA-----AGCTTTCA-GCTT---TCGAAGTCGAGCTCAAAGAAAACAAATtggcaagaagctaaaatatataaactaatat
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AGTAATTTATTCAGCGGGGTCGCAGAGCAGTACATAGGGATTCGGCCGTTCATTTGAAGAGGTTGTGTGTTTGATCCACAGCTCTACCCTGATAACCTCGCAAA
Unaligned ( gi|10 ): TTTAAACACAATTTTCAACCTTTAACAGGTACTGTTTTATTGGTGGAAGGAGGCCCAAAAAGGAATCATAAATCTTAAATAGTATCACCATCCGTCAAATAA
Unaligned ( gi|11 ): TTTTATTAGGAGGAAAAATTAGAGCCTCAAAACTAATCTGGAAACAACCAACCATCTTCCAAAAGTAACCGTTAAATCATTTTAAACTA
Unaligned ( gi|12 ): AATATGAGTAGAACCACCGTTGTTCTGAAAGAAAGTGGCAAACAATTTTGTGTTGAAGCGTTTCACAATAGAGAATTGATTC
Unaligned ( gi|13 ): TTTATTGGAAGACTACTTTAGCATGAATCTGAATTGAAACACCGTTTTCCCAAAGAAACTTGACAAAAAACTATCTTGAATT
Alignments
lowQualScore : 333 22 11 11 3333 1 222222222 4444444444444 222222222222 11111111 222222222 111 11111 2222 1 2 222 2222 1 11
lowQualScore : 555 77 88 4 88 1 0 3333 22 0 555555555 0000000000000 1 7 0 3 5 0 1 55 4 0 777 0 7 0 999999 5 0 22 1 1 5 0 5 66 4 3 999999999999 88888888 5 1 4 44 3 0 111111111 2 000 1 55555 3 8 1 3 8 4444 9999 3 0 4 000 1111 5 88 4
lowQualScore : ... .. .. . .. . . .... .. . ......... ............. . . . . . . . .. . . ... . . . ...... . . .. . . . . . .. . . ............ ........ . . . .. . . ......... . ... . ..... . . . . . .... .... . . . ... .... . .. .
lowQualScore : 000 55 00 0 00 0 7 7777 00 0 000000000 3333333333333 0 8 3 5 7 1 7 99 7 4 444 2 9 1 999999 0 2 00 0 8 0 2 0 11 4 1 333333333333 11111111 0 4 5 77 4 2 000000000 5 555 7 77777 7 8 0 8 0 0000 7777 3 0 0 555 0000 0 55 0
consensus : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-ATGTTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAGAGTGT-CGGCCGCTCAT--GCCAGAGGTTGCGAGTT-CGA-TCCCCGGCTCGACCC-GATGGCCTCTCA-AAAA--CAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
Reference ( family-1955 ) : AAACGG---AACATT--TTTATGAAAATTGTCAACNTTCATATGTTANNT-TTNAC-CAG--AATCCA-C-TA-----A-GCANGGCGGTAGTGTAATGG-ATAGAGTGT-TGGACGCTCAT--GCCAGAGGTTGCGAGTT-CGA-TCCCNNGNTCGATCC-GATGGCCTCTCA-AAAA--CAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGATAGCGATTCAT-ATA-----AGCTCTCA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANNNCACATAT-AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
gi|1 : AAACGG---AACATT--TTTATGAAAATTGTCAACGTTTATATGTTACATATTGATACA---AATACA-A-CATAACGA-GCATGTC-GCAATGTAGTGG-AT--AGTGC-CGTCCAATCAT--GTTATAGGTTGCAAGTT-CGA-TGGCCGGCTCGATGC-GCTGGCTTCTCA-AAAA--CAACA-
gi|14 : aaaaatgacaaacaagatttcacaatatacttgatgtcttttggatcaatatcgttcccgtagtcaagaaatgaagactggatttaggtttaaaatcatttgaataaggttaataccattttcaacacaattttggttatctacgacacatccagttttattggtggagggatacctcaaaatgaatctgagtagaaccaccgttcttccgcaagtaactggcaaactttttcaaattaagttttaggagcaagagagactcgaatcttcgaccttagccggataggtaaatgatcttgagaaggggccttagaccactcggctacaacgaacccataaaaaatatagttttgttgttgAACCTTCA-AT-TTGTTT-TCACC-CAGTCAAACCATC-T--------TCAGGGCAGTAGTGTAATGG-ATAGAGTG---GGACACTCAT--GCCAattgta
gi|15 : A--------C-TCAGGAAGCAGATTCAAGAGTGGTTCAT-ATca
gi|16 : GCGATTTAT-AAA-----AGCTTTCA-GCT---TTCGAAGTCGAGCTCAAAGAAAACAAAtggcaagaagctaaaatatataaactaatat
gi|17 : --CAACA-CTCAGTACTGGTT------------CTA--------T-CCAGGAAGtc
gi|2 : AAGCGGTACAACATTGGTTTA--AAAGTAG--AACTTTTA---ATTATCT-TTTAC-CCA--AATCCA-CATA-----AAGCAGGGCGGTAGTCTAATGG-ATAGAGTGT-TGGCCGCTGAC--GCCAGACGTTGCGGGTT-GGA-TCCCCCGGTCGACCC-GAT-GCCTCTCATAAAA--CAACA-CTCAGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGAGAGCGATTTAT-ATA-----AGCTTTTA-GCTTTCATCGCAATCGAGCT-AAAAAAAACAAATTAGTATAA-AC---TAAATCCACATATCAATGTCCAGTCATATATTT---ATGAACGTGTAAT-CAT--GATGATATTAC
gi|3 : -TA-----A-GCATGTTGGAAG---AACAGCATACAGTGT-TGGCCTTTCAT--GCTGGAGGTTGTGAGTA-TGA-TCCCCAGCTTGACCG-GATGATTTCTCA-AAAAAACAATA-CTCAGTTCAGGTT------------CTA--------C-CTAGGAAGCAGACTTGAGAGCAGTTCAT-A------------------TTTCTTGGCAATCAAGCT-----AAAATAAATTAGTATAA-A----TAAtatttataacttcatttat
gi|4 : ctagatgttgcaatcatgaaaaaaatagaaattTGG-ATGAAGTGT-TGGATACTCAA--GCCAG--GT--CAA----TGACTCTTATGCTCGAACT-TATGACCTGTCT-AAAT--CAACA-CTCGATACTAGCCATAATACGTGCCCTATAATACAAC-CCATGATACGTACCCTATGGCGATGCGTTATA-----AA-TCTTG-GTTTTCTTCGCAATCGAGCT-----GACATAAA----TATAA-ACTTATAAGGACACATAT-agaatgagtgtgactgttttcatgtgtagaaaactttaatactgaccaatatatctctgagctgtctg
gi|5 : AAG--CAAAA-CTCAATAATGGTT------------CTA--------T-CCAG-------ACTTGACAGCAAATCAT-ATATTTAAAGCTCTAAAGCTCTCTTCGTAATCAAGCT-AAAAAAAA-AAAGTAGTACAATAT---TATTTT----TAA-AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
gi|6 : GGGTT-CGA-TCATAGAGTCGTTTC-GATGGCCGCACA-AAAA--TAGCACCTCAGTACAGGCT------------TTA--------CTCCAGAAACCA---TCGCTAG-----------------AGCTCTTA-ACTTACTTTGCAAATGATTC-AAAGAAAACAAAATTGTA-AA-A
gi|7 : ATCT-TTT---CAG--AATCT----TA-----ATGCTAGGCAGTGGTGCAATGG-ATAGTG-GTATGGATGCTGGA--ATCAGATGTTGTG-GTCGCAA-ACTTAGACTTGATCC-GATAGGTTCTTA-TAAA--CAACA-TTTGGTA
gi|8 : --GCCAGA--TCACGAG-----A-TCCCACGATCGACCC-GATGGCCTCCCA-A---------------GTACTGGTT------------CTA--------C-ACAATTA-CGGACTCAATAGCTATT
gi|9 : --AATTTA-T-TC-----A-GCGGGGTCGCAGAGCAGTAC-ATAGGGATT-CGGCCGTTCATTTGA-AGAGGTTGTGTGTT-TGA-TCCACAGCTCTACCCTGATAACCTCGCA-AAaacttggttagataattcaattttcatc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTAAACACAATTTTCAACCTTTAACAGGTACTGTTTTATTGGTGGAAGGAGGCCCAAAAAGGAATCATAAATCTTAAATAGTATCACCATCCGTCAAATAA
Unaligned ( gi|11 ): TTTTATTAGGAGGAAAAATTAGAGCCTCAAAACTAATCTGGAAACAACCAACCATCTTCCAAAAGTAACCGTTAAATCATTTTAAACTA
Unaligned ( gi|12 ): AATATGAGTAGAACCACCGTTGTTCTGAAAGAAAGTGGCAAACAATTTTGTGTTGAAGCGTTTCACAATAGAGAATTGATTC
Unaligned ( gi|13 ): TTTATTGGAAGACTACTTTAGCATGAATCTGAATTGAAACACCGTTTTCCCAAAGAAACTTGACAAAAAACTATCTTGAATT
Alignments
lowQualScore : 222 11 11 11 1 2 1 222222222 4444444444444 222222222222 11111111 222222222 11111 2222 1 1 222 1 1 1 11
lowQualScore : 111 77 88 1 88 1 3 3 0 0 555555555 0000000000000 1 0 3 5 88 77 0 0 777 0 7 5 4 888 7777 5 0 5 66 4 3 999999999999 88888888 5 1 4 44 1 0 111111111 2 1 6 3 55555 3 8 1 3 8 4444 1 77 3 5 1 000 5 5 5 88 1
lowQualScore : ... .. .. . .. . . . . . ......... ............. . . . . .. .. . . ... . . . . ... .... . . . .. . . ............ ........ . . . .. . . ......... . . . . ..... . . . . . .... . .. . . . ... . . . .. .
lowQualScore : 000 55 00 0 00 0 3 3 2 0 000000000 3333333333333 0 3 5 7 00 77 7 4 444 2 9 7 1 222 5555 0 2 0 11 4 1 333333333333 11111111 0 4 5 77 0 2 000000000 5 8 7 5 77777 7 8 0 8 0 0000 0 77 3 5 0 555 0 0 0 55 0
consensus : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAG-AGTGTCGGCCGCTCAT--GCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
Reference ( family-1955 ) : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-ATGTTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAG-AGTGTCGGCCGCTCAT--GCCAGAGGTTG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
gi|1 : AAACGG---AACATT--TTTATGAAAATTGTCAACGTTTATATGTTACATATTGATACA---AATACA-A-CATAACGA-GCATGTCG-CAATGTAGTGG-ATAG---TGCCGTCCAATCAT--GTTATAGGTTG-CAAGTT-CGATGGCCGGCTCGATGC-GCTGGCTTCTCA-A--AAACAACA-
gi|14 : aaaaatgacaaacaagatttcacaatatacttgatgtcttttggatcaatatcgttcccgtagtcaagaaatgaagactggatttaggtttaaaatcatttgaataaggttaataccattttcaacacaattttggttatctacgacacatccagttttattggtggagggatacctcaaaatgaatctgagtagaaccaccgttcttccgcaagtaactggcaaactttttcaaattaagttttaggagcaagagagactcgaatcttcgaccttagccggataggtaaatgatcttgagaaggggccttagaccactcggctacaacgaacccataaaaaatatagttttgttgttgAACCTTCA-AT-TTGTTT-TCACC-CAGTCAAACCATC-T--------TCAGGGCAGTAGTGTAATGG-ATAG-AGTG--GGACACTCAT--GCCAattgta
gi|15 : A--------C-TCAGGAAGCAGATTCAAGAGTGGTTCAT-ATca
gi|16 : GCGATTTAT-AAA-----AGCTTTCA-GCTT---TCGAAGTCGAGCTCAAAGAAAACAAAtggcaagaagctaaaatatataaactaatat
gi|17 : CAACA-CTCAGTACTGGTT------------CTA--------T-CCAGGAAGtc
gi|2 : AAGCGGTACAACATTGGTTTA--AAAGTAG--AACTTTTA-AT--TATCT-TTTAC-CCA--AATCCA-CATA-----AAGCAGGGCGGTAGTCTAATGG-ATAG-AGTGTTGGCCGCTGAC--GCCAGACGTTG-CGGGTT-GGATCCCCCGGTCGACCC-GAT-GCCTCTCATA--AAACAACA-CTCAGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGAGAGCGATTTAT-ATA-----AGCTTTTA-GCTTTCATCGCAATCGAGCT-AAAAAAAACAAATTAGTATAA-AC---TAAATCCACATATCAATGTCCAGTCATATATTT---ATGAACGTGTAAT-CAT--GATGATATTAC
gi|3 : -TA-----A-GCATGTTGGAAG---AACAGCATAC-AGTGTTGGCCTTTCAT--GCTGGAGGTTG-TGAGTA-TGATCCCCAGCTTGACCG-GATGATTTCTCA-AAAAAACAATA-CTCAGTTCAGGTT------------CTA--------C-CTAGGAAGCAGACTTGAGAGCAGTTCAT-A------------------TTTCTTGGCAATCAAGCT-----AAAATAAATTAGTATAA-A----TAAtatttataacttcatttat
gi|4 : ctagatgttgcaatcatgaaaaaaatagaaattTGG-ATGA-AGTGTTGGATACTCAA--GCCAG--GTCAATGACTC-TTAT-----GCTCGAACT-TATGACCTGTCT-A--AATCAACA-CTCGATACTAGCCATAATACGTGCCCTATAATACAAC-CCATGATACGTACCCTATGGCGATGCGTTATA-----AA-TCTTG-GTTTTCTTCGCAATCGAGCT-----GACATAAA----TATAA-ACTTATAAGGACACATAT-agaatgagtgtgactgttttcatgtgtagaaaactttaatactgaccaatatatctctgagctgtctg
gi|5 : --AAGCAAAA-CTCAATAATGGTT------------CTA--------T-CCAG-------ACTTGACAGCAAATCAT-ATATTTAAAGCTCTAAAGCTCTCTTCGTAATCAAGCT-AAAAAAAA-AAAGTAGTACAATAT---TATTTT----TAA-AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
gi|6 : GGGTT-CGATCATAGAGTCGTTTC-GATGGCCGCACA-A--AAATAGCACCTCAGTACAGGCT------------TTA--------CTCCAGAAACCA---TCGCTAG-----------------AGCTCTTA-ACTTACTTTGCAAATGATTC-AAAGAAAACAAAATTGTA-AA-A
gi|7 : ATCT-TTT---CAG--AATCT----TA-----ATGCTAGGCAGTGGTGCAATGG-ATAGTGGTAT-GGATGCTGGA--ATCAGATGTTG-TG-GTCGCAAACTTAGACTTGATCC-GATAGGTTCTTA-T--AAACAACA-TTTGGTA
gi|8 : --GCCAGA--TCA-CGAG-----ATCCCACGATCGACCC-GATGGCCTCCCA-A---------------GTACTGGTT------------CTA--------C-ACAATTA-CGGACTCAATAGCTATT
gi|9 : --AATTTA-T-TC-----A-GCGGGGTCGCAGAGCAGTAC-ATAG-GGATTCGGCCGTTCATTTGA-AGAGGTTG-TGTGTT-TGATCCACAGCTCTACCCTGATAACCTCGCA-A--Aaacttggttagataattcaattttcatc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTAAACACAATTTTCAACCTTTAACAGGTACTGTTTTATTGGTGGAAGGAGGCCCAAAAAGGAATCATAAATCTTAAATAGTATCACCATCCGTCAAATAA
Unaligned ( gi|11 ): TTTTATTAGGAGGAAAAATTAGAGCCTCAAAACTAATCTGGAAACAACCAACCATCTTCCAAAAGTAACCGTTAAATCATTTTAAACTA
Unaligned ( gi|12 ): AATATGAGTAGAACCACCGTTGTTCTGAAAGAAAGTGGCAAACAATTTTGTGTTGAAGCGTTTCACAATAGAGAATTGATTC
Unaligned ( gi|13 ): TTTATTGGAAGACTACTTTAGCATGAATCTGAATTGAAACACCGTTTTCCCAAAGAAACTTGACAAAAAACTATCTTGAATT
Alignments
lowQualScore : 222 11 11 11 1 1 1 222222222 4444444444444 222222222222 11111111 222222222 11111 2222 1 1 222 1 1 1 11
lowQualScore : 111 77 88 1 88 1 3 3 7 0 0 555555555 0000000000000 1 0 3 5 88 77 0 0 888 0 7 1 5 4 888 7777 5 0 5 66 4 3 999999999999 88888888 5 1 4 44 1 0 111111111 2 1 6 3 55555 3 8 1 3 8 4444 1 77 3 5 1 000 5 5 5 88 1
lowQualScore : ... .. .. . .. . . . . . . ......... ............. . . . . .. .. . . ... . . . . . ... .... . . . .. . . ............ ........ . . . .. . . ......... . . . . ..... . . . . . .... . .. . . . ... . . . .. .
lowQualScore : 000 55 00 0 00 0 3 3 3 2 0 000000000 3333333333333 0 3 5 7 00 77 7 4 444 2 9 4 7 1 222 5555 0 2 0 11 4 1 333333333333 11111111 0 4 5 77 0 2 000000000 5 8 7 5 77777 7 8 0 8 0 0000 0 77 3 5 0 555 0 0 0 55 0
consensus : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAG-AGTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
Reference ( family-1955 ) : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAG-AGTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
gi|1 : AAACGG---AACATT--TTTATGAAAATTGTCAACGTTTATATGTTACATATTGATACA---AATACA-A-CATAACGA-GCATGTCG-CAATGTAGTGG-ATAG---TGCCGTCCAATCA--TGTTATAGGTTG-CAAGTT-CGATGGCCGGCTCGATGC-GCTGGCTTCTCA-A--AAACAACA-
gi|14 : aaaaatgacaaacaagatttcacaatatacttgatgtcttttggatcaatatcgttcccgtagtcaagaaatgaagactggatttaggtttaaaatcatttgaataaggttaataccattttcaacacaattttggttatctacgacacatccagttttattggtggagggatacctcaaaatgaatctgagtagaaccaccgttcttccgcaagtaactggcaaactttttcaaattaagttttaggagcaagagagactcgaatcttcgaccttagccggataggtaaatgatcttgagaaggggccttagaccactcggctacaacgaacccataaaaaatatagttttgttgttgAACCTTCA-AT-TTGTTT-TCACC-CAGTCAAACCATC-T--------TCAGGGCAGTAGTGTAATGG-ATAG-AGTG--GGACACTCA--TGCCAattgta
gi|15 : A--------C-TCAGGAAGCAGATTCAAGAGTGGTTCAT-ATca
gi|16 : GCGATTTAT-AAA-----AGCTTTCA-GCTT---TCGAAGTCGAGCTCAAAGAAAACAAAtggcaagaagctaaaatatataaactaatat
gi|17 : CAACA-CTCAGTACTGGTT------------CTA--------T-CCAGGAAGtc
gi|2 : AAGCGGTACAACATTGGTTTA--AAAGTAG--AACTTTTA-AT-T-ATCT-TTTAC-CCA--AATCCA-CATA-----AAGCAGGGCGGTAGTCTAATGG-ATAG-AGTGTTGGCCGCTGA--CGCCAGACGTTG-CGGGTT-GGATCCCCCGGTCGACCC-GAT-GCCTCTCATA--AAACAACA-CTCAGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGAGAGCGATTTAT-ATA-----AGCTTTTA-GCTTTCATCGCAATCGAGCT-AAAAAAAACAAATTAGTATAA-AC---TAAATCCACATATCAATGTCCAGTCATATATTT---ATGAACGTGTAAT-CAT--GATGATATTAC
gi|3 : -TA-----A-GCATGTTGGAAG---AACAGCATAC-AGTGTTGGCCTTTCA--TGCTGGAGGTTG-TGAGTA-TGATCCCCAGCTTGACCG-GATGATTTCTCA-AAAAAACAATA-CTCAGTTCAGGTT------------CTA--------C-CTAGGAAGCAGACTTGAGAGCAGTTCAT-A------------------TTTCTTGGCAATCAAGCT-----AAAATAAATTAGTATAA-A----TAAtatttataacttcatttat
gi|4 : ctagatgttgcaatcatgaaaaaaatagaaattTGG-ATGA-AGTGTTGGATACTCA--AGCCAG--GTCAATGACTC-TTAT-----GCTCGAACT-TATGACCTGTCT-A--AATCAACA-CTCGATACTAGCCATAATACGTGCCCTATAATACAAC-CCATGATACGTACCCTATGGCGATGCGTTATA-----AA-TCTTG-GTTTTCTTCGCAATCGAGCT-----GACATAAA----TATAA-ACTTATAAGGACACATAT-agaatgagtgtgactgttttcatgtgtagaaaactttaatactgaccaatatatctctgagctgtctg
gi|5 : --AAGCAAAA-CTCAATAATGGTT------------CTA--------T-CCAG-------ACTTGACAGCAAATCAT-ATATTTAAAGCTCTAAAGCTCTCTTCGTAATCAAGCT-AAAAAAAA-AAAGTAGTACAATAT---TATTTT----TAA-AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
gi|6 : GGGTT-CGATCATAGAGTCGTTTC-GATGGCCGCACA-A--AAATAGCACCTCAGTACAGGCT------------TTA--------CTCCAGAAACCA---TCGCTAG-----------------AGCTCTTA-ACTTACTTTGCAAATGATTC-AAAGAAAACAAAATTGTA-AA-A
gi|7 : ATCT-TTT---CAG--AATCT----TA-----ATGCTAGGCAGTGGTGCAATGG-ATAGTGGTAT-GGATGCTGG--AATCAGATGTTG-TG-GTCGCAAACTTAGACTTGATCC-GATAGGTTCTTA-T--AAACAACA-TTTGGTA
gi|8 : GCCAGA--TCA-CGAG-----ATCCCACGATCGACCC-GATGGCCTCCCA-A---------------GTACTGGTT------------CTA--------C-ACAATTA-CGGACTCAATAGCTATT
gi|9 : --AATTTA-T-TC-----A-GCGGGGTCGCAGAGCAGTAC-ATAG-GGATTCGGCCGTTCATTTG-AAGAGGTTG-TGTGTT-TGATCCACAGCTCTACCCTGATAACCTCGCA-A--Aaacttggttagataattcaattttcatc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTAAACACAATTTTCAACCTTTAACAGGTACTGTTTTATTGGTGGAAGGAGGCCCAAAAAGGAATCATAAATCTTAAATAGTATCACCATCCGTCAAATAA
Unaligned ( gi|11 ): TTTTATTAGGAGGAAAAATTAGAGCCTCAAAACTAATCTGGAAACAACCAACCATCTTCCAAAAGTAACCGTTAAATCATTTTAAACTA
Unaligned ( gi|12 ): AATATGAGTAGAACCACCGTTGTTCTGAAAGAAAGTGGCAAACAATTTTGTGTTGAAGCGTTTCACAATAGAGAATTGATTC
Unaligned ( gi|13 ): TTTATTGGAAGACTACTTTAGCATGAATCTGAATTGAAACACCGTTTTCCCAAAGAAACTTGACAAAAAACTATCTTGAATT
Alignments
lowQualScore : 222 11 11 11 1 1 1 222222222 4444444444444 222222222222 11111111 222222222 11111 2222 1 1 222 1 1 1 11
lowQualScore : 111 77 88 1 88 1 3 3 7 0 0 555555555 0000000000000 1 0 3 5 88 77 0 0 888 0 7 1 5 4 888 7777 5 0 5 66 4 3 999999999999 88888888 5 1 4 44 1 0 111111111 2 1 6 3 55555 3 8 1 3 8 4444 1 77 3 5 1 000 5 5 5 88 1
lowQualScore : ... .. .. . .. . . . . . . ......... ............. . . . . .. .. . . ... . . . . . ... .... . . . .. . . ............ ........ . . . .. . . ......... . . . . ..... . . . . . .... . .. . . . ... . . . .. .
lowQualScore : 000 55 00 0 00 0 3 3 3 2 0 000000000 3333333333333 0 3 5 7 00 77 7 4 444 2 9 4 7 1 222 5555 0 2 0 11 4 1 333333333333 11111111 0 4 5 77 0 2 000000000 5 8 7 5 77777 7 8 0 8 0 0000 0 77 3 5 0 555 0 0 0 55 0
consensus : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAG-AGTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
Reference ( family-1955 ) : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAG-AGTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
gi|1 : AAACGG---AACATT--TTTATGAAAATTGTCAACGTTTATATGTTACATATTGATACA---AATACA-A-CATAACGA-GCATGTCG-CAATGTAGTGG-ATAG---TGCCGTCCAATCA--TGTTATAGGTTG-CAAGTT-CGATGGCCGGCTCGATGC-GCTGGCTTCTCA-A--AAACAACA-
gi|14 : aaaaatgacaaacaagatttcacaatatacttgatgtcttttggatcaatatcgttcccgtagtcaagaaatgaagactggatttaggtttaaaatcatttgaataaggttaataccattttcaacacaattttggttatctacgacacatccagttttattggtggagggatacctcaaaatgaatctgagtagaaccaccgttcttccgcaagtaactggcaaactttttcaaattaagttttaggagcaagagagactcgaatcttcgaccttagccggataggtaaatgatcttgagaaggggccttagaccactcggctacaacgaacccataaaaaatatagttttgttgttgAACCTTCA-AT-TTGTTT-TCACC-CAGTCAAACCATC-T--------TCAGGGCAGTAGTGTAATGG-ATAG-AGTG--GGACACTCA--TGCCAattgta
gi|15 : A--------C-TCAGGAAGCAGATTCAAGAGTGGTTCAT-ATca
gi|16 : GCGATTTAT-AAA-----AGCTTTCA-GCTT---TCGAAGTCGAGCTCAAAGAAAACAAAtggcaagaagctaaaatatataaactaatat
gi|17 : CAACA-CTCAGTACTGGTT------------CTA--------T-CCAGGAAGtc
gi|2 : AAGCGGTACAACATTGGTTTA--AAAGTAG--AACTTTTA-AT-T-ATCT-TTTAC-CCA--AATCCA-CATA-----AAGCAGGGCGGTAGTCTAATGG-ATAG-AGTGTTGGCCGCTGA--CGCCAGACGTTG-CGGGTT-GGATCCCCCGGTCGACCC-GAT-GCCTCTCATA--AAACAACA-CTCAGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGAGAGCGATTTAT-ATA-----AGCTTTTA-GCTTTCATCGCAATCGAGCT-AAAAAAAACAAATTAGTATAA-AC---TAAATCCACATATCAATGTCCAGTCATATATTT---ATGAACGTGTAAT-CAT--GATGATATTAC
gi|3 : -TA-----A-GCATGTTGGAAG---AACAGCATAC-AGTGTTGGCCTTTCA--TGCTGGAGGTTG-TGAGTA-TGATCCCCAGCTTGACCG-GATGATTTCTCA-AAAAAACAATA-CTCAGTTCAGGTT------------CTA--------C-CTAGGAAGCAGACTTGAGAGCAGTTCAT-A------------------TTTCTTGGCAATCAAGCT-----AAAATAAATTAGTATAA-A----TAAtatttataacttcatttat
gi|4 : ctagatgttgcaatcatgaaaaaaatagaaattTGG-ATGA-AGTGTTGGATACTCA--AGCCAG--GTCAATGACTC-TTAT-----GCTCGAACT-TATGACCTGTCT-A--AATCAACA-CTCGATACTAGCCATAATACGTGCCCTATAATACAAC-CCATGATACGTACCCTATGGCGATGCGTTATA-----AA-TCTTG-GTTTTCTTCGCAATCGAGCT-----GACATAAA----TATAA-ACTTATAAGGACACATAT-agaatgagtgtgactgttttcatgtgtagaaaactttaatactgaccaatatatctctgagctgtctg
gi|5 : --AAGCAAAA-CTCAATAATGGTT------------CTA--------T-CCAG-------ACTTGACAGCAAATCAT-ATATTTAAAGCTCTAAAGCTCTCTTCGTAATCAAGCT-AAAAAAAA-AAAGTAGTACAATAT---TATTTT----TAA-AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
gi|6 : GGGTT-CGATCATAGAGTCGTTTC-GATGGCCGCACA-A--AAATAGCACCTCAGTACAGGCT------------TTA--------CTCCAGAAACCA---TCGCTAG-----------------AGCTCTTA-ACTTACTTTGCAAATGATTC-AAAGAAAACAAAATTGTA-AA-A
gi|7 : ATCT-TTT---CAG--AATCT----TA-----ATGCTAGGCAGTGGTGCAATGG-ATAGTGGTAT-GGATGCTGG--AATCAGATGTTG-TG-GTCGCAAACTTAGACTTGATCC-GATAGGTTCTTA-T--AAACAACA-TTTGGTA
gi|8 : GCCAGA--TCA-CGAG-----ATCCCACGATCGACCC-GATGGCCTCCCA-A---------------GTACTGGTT------------CTA--------C-ACAATTA-CGGACTCAATAGCTATT
gi|9 : --AATTTA-T-TC-----A-GCGGGGTCGCAGAGCAGTAC-ATAG-GGATTCGGCCGTTCATTTG-AAGAGGTTG-TGTGTT-TGATCCACAGCTCTACCCTGATAACCTCGCA-A--Aaacttggttagataattcaattttcatc
blockSeqs : TAC GG . A . C . . T . ACCCAGTC ACATAAA G T C TG TT TTT C T A G CGC CCCC T T AA C A ATAATACGTGCC TAATACAA T G G GG G ATATTTAA C T A T AAAA C T A T T CTTA G AC . . A GCA . . G TA A
blockSeqs : T . . . . TACCCA ATTCA G T . A TT T G T . A TG CCCA . . . . A . . . G G AG G TATA C T . T AAAA T G A T . T T T .
blockSeqs : . TCAG ATCT T T . A TT C T C . A AT ATAG . . . . G . . . G G GT T ATA C A . T AAAG T A T C . .
blockSeqs : TAAT A A . A TC T G T . G CT TTAG . . . . A . . . G A GG C A . T . T . C . . . .
blockSeqs : G . . A T A . C . A TC CCAC . . . . A . . . A C A T . . . . A . .
blockSeqs : . G . A . T . T TT CACA . . . . G . . . T . . T
blockSeqs : . . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ANAT********* A* AAAA*
originalCons : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCA-C-TA-----A-GCAGGGCGGTAGTGTAATGG-ATAG-AGTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCT-AAAGAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
finalCons : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCANAT---------GCAGGGCGGTAGTGTAATGG-ATAGA-GTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCGAGCTAAAA-AAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTAAACACAATTTTCAACCTTTAACAGGTACTGTTTTATTGGTGGAAGGAGGCCCAAAAAGGAATCATAAATCTTAAATAGTATCACCATCCGTCAAATAA
Unaligned ( gi|11 ): TTTTATTAGGAGGAAAAATTAGAGCCTCAAAACTAATCTGGAAACAACCAACCATCTTCCAAAAGTAACCGTTAAATCATTTTAAACTA
Unaligned ( gi|12 ): AATATGAGTAGAACCACCGTTGTTCTGAAAGAAAGTGGCAAACAATTTTGTGTTGAAGCGTTTCACAATAGAGAATTGATTC
Unaligned ( gi|13 ): TTTATTGGAAGACTACTTTAGCATGAATCTGAATTGAAACACCGTTTTCCCAAAGAAACTTGACAAAAAACTATCTTGAATT
Alignments
lowQualScore : 222 11 11 11 1 1 1 222222222 11 33333 222222222222 11111111 333333333333333333 2222 1 1 222 1 1 1 11
lowQualScore : 111 77 88 1 88 1 3 3 7 0 0 777777777 11 44444 1 88 77 0 0 888 0 7 1 5 4 888 7777 5 0 5 66 4 3 999999999999 88888888 5 1 4 44 1 0 666666666666666666 5 1 5 55 8 3 1 8 4444 1 77 3 5 1 000 5 5 5 88 1
lowQualScore : ... .. .. . .. . . . . . . ......... .. ..... . .. .. . . ... . . . . . ... .... . . . .. . . ............ ........ . . . .. . . .................. . . . .. . . . . .... . .. . . . ... . . . .. .
lowQualScore : 000 55 00 0 00 0 3 3 3 2 0 888888888 00 00000 4 00 77 7 4 444 2 9 4 7 1 222 5555 0 2 0 11 4 1 333333333333 11111111 0 4 5 77 0 2 333333333333333333 1 7 7 99 9 3 7 0 0000 0 77 3 5 0 555 0 0 0 55 0
consensus : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCAN-ATAA---GCAGGGCGGTAGTGTAATGGATAG-AGTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCG-AGCT-AAAAAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
Reference ( family-1955 ) : AAGCGGTACAACATTGGTTTATGAAAGTNGTCAACNTTTA-AT-TTATCT-TTNAC-CAG--AATCCAN-AT-----GCAGGGCGGTAGTGTAATGGATAG-AGTGTCGGCCGCTCA--TGCCAGAGGTCG-CGAGTT-CGATCCCCGGCTCGACCC-GATGGCCTCTCA-A--AAACAACA-CTCGGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGANAGCGATTCAT-ATA-----AGCTCTTA-GCTTTCTTCGCAATCG-AGCT-AAAAAAAACAAANTAGTATAA-AC---TAANTNCACATAT-AATGTCCAGTCATGTANTTGCAATGAACGTGTAATGCATTAGANGACATTAC
gi|1 : AAACGG---AACATT--TTTATGAAAATTGTCAACGTTTATATGTTACATATTGATACA---AATACAACATAACGAGCATGTCG-CAATGTAGTGGATAG---TGCCGTCCAATCA--TGTTATAGGTTG-CAAGTT-CGATGGCCGGCTCGATGC-GCTGGCTTCTCA-A--AAACAACA-
gi|14 : aaaaatgacaaacaagatttcacaatatacttgatgtcttttggatcaatatcgttcccgtagtcaagaaatgaagactggatttaggtttaaaatcatttgaataaggttaataccattttcaacacaattttggttatctacgacacatccagttttattggtggagggatacctcaaaatgaatctgagtagaaccaccgttcttccgcaagtaactggcaaactttttcaaattaagttttaggagcaagagagactcgaatcttcgaccttagccggataggtaaatgatcttgagaaggggccttagaccactcggctacaacgaacccataaaaaatatagttttgttgttgAACCTTCA-AT-TTGTTT-TCACC-CAGTCAAACCAT-CT-----TCAGGGCAGTAGTGTAATGGATAG-AGTG--GGACACTCA--TGCCAattgta
gi|15 : A--------C-TCAGGAAGCAGATTCAAGAGTGGTTCAT-A----------------------TTGGCAA--GAAGCT-AAAATATATAAACTAATATca
gi|16 : GCGATTTAT-AAA-----AGCTTTCA-GCTT---TCGAAGTCG-AGCTCAAAGAAAACAAA
gi|17 : CAACA-CTCAGTACTGGTT------------CTA--------T-CCAGGAAGtc
gi|2 : AAGCGGTACAACATTGGTTTA--AAAGTAG--AACTTTTA-AT-T-ATCT-TTTAC-CCA--AATCCAC-ATAAA--GCAGGGCGGTAGTCTAATGGATAG-AGTGTTGGCCGCTGA--CGCCAGACGTTG-CGGGTT-GGATCCCCCGGTCGACCC-GAT-GCCTCTCATA--AAACAACA-CTCAGTACTGGTT------------CTA--------C-CCAGGAAGCGGACTCGAGAGCGATTTAT-ATA-----AGCTTTTA-GCTTTCATCGCAATCG-AGCT-AAAAAAAACAAATTAGTATAA-AC---TAAATCCACATATCAATGTCCAGTCATATATTT---ATGAACGTGTAAT-CAT--GATGATATTAC
gi|3 : ATAC-AGTGTTGGCCTTTCA--TGCTGGAGGTTG-TGAGTA-TGATCCCCAGCTTGACCG-GATGATTTCTCA-AAAAAACAATA-CTCAGTTCAGGTT------------CTA--------C-CTAGGAAGCAGACTTGAGAGCAGTTCAT-A------------------TTTCTTGGCAATCA-AGCT-----AAAATAAATTAGTATAA-A----TAAtatttataacttcatttat
gi|4 : ctagatgttgcaatcatgaaaaaaatagaaatttaagcatgttggaagaacagcTGGATGA-AGTGTTGGATACTCA--AGCCAG--GTCAATGACTC-TTAT-----GCTCGAACT-TATGACCTGTCT-A--AATCAACA-CTCGATACTAGCCATAATACGTGCCCTATAATACAAC-CCATGATACGTACCCTATGGCGATGCGTTATA-----AA-TCTTG-GTTTTCTTCGCAATCG-AGCT-GACATAAA--------TATAA-ACTTATAAGGACACATAT-agaatgagtgtgactgttttcatgtgtagaaaactttaatactgaccaatatatctctgagctgtctg
gi|5 : --AAGCAAAA-CTCAATAATGGTT------------CTA--------T-CCAG-------ACTTGACAGCAAATCAT-ATATTTAAAGCTCTAAAGCTCTCTTCGTAATCA-AGCT-AAAAAAAA-AAAGTAGTACAATAT---TATTTT----TAA-AATGTCT-GTTATGTAATTGCAATGAA-GT-TAATGTATTAGAAGACATTAC
gi|6 : GGGTT-CGATCATAGAGTCGTTTC-GATGGCCGCACA-A--AAATAGCACCTCAGTACAGGCT------------TTA--------CTCCAGAAACCA---TCGCTAG-----------------AGCTCTTA-ACTTACTTTGCAAATG-ATTC-AAAGAAAACAAAATTGTA-AA-A
gi|7 : ATCT-TTT---CAG--AATCTTA-AT-----GCTAGGCAGTGGTGCAATGGATAGTGGTAT-GGATGCTGG--AATCAGATGTTG-TG-GTCGCAAACTTAGACTTGATCC-GATAGGTTCTTA-T--AAACAACA-TTTGGTA
gi|8 : GCCAGA--TCA-CGAG-----ATCCCACGATCGACCC-GATGGCCTCCCA-A---------------GTACTGGTT------------CTA--------C-ACAATTA-CGGACTCAATAGCTATT
gi|9 : -----GCGGGGTCGCAGAGCAGTACATAG-GGATTCGGCCGTTCATTTG-AAGAGGTTG-TGTGTT-TGATCCACAGCTCTACCCTGATAACCTCGCA-A--Aaacttggttagataattcaattttcatc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTTAAACACAATTTTCAACCTTTAACAGGTACTGTTTTATTGGTGGAAGGAGGCCCAAAAAGGAATCATAAATCTTAAATAGTATCACCATCCGTCAAATAA
Unaligned ( gi|11 ): TTTTATTAGGAGGAAAAATTAGAGCCTCAAAACTAATCTGGAAACAACCAACCATCTTCCAAAAGTAACCGTTAAATCATTTTAAACTA
Unaligned ( gi|12 ): AATATGAGTAGAACCACCGTTGTTCTGAAAGAAAGTGGCAAACAATTTTGTGTTGAAGCGTTTCACAATAGAGAATTGATTC
Unaligned ( gi|13 ): TTTATTGGAAGACTACTTTAGCATGAATCTGAATTGAAACACCGTTTTCCCAAAGAAACTTGACAAAAAACTATCTTGAATT