lowQualScore : 111111111111111111111
lowQualScore : 1 000000000000000000000 555555555555 333 1111 11 1 1 2222222222 666666666666666666666666666666666666 777 2222
lowQualScore : 6 7 4 000000000000000000000 888888888888 999 000 2 2 6 7777 88 5 3 7 77 1 5 5 1111111111 6 222222222222222222222222222222222222 1 66 9999999 4 9 000 6666
lowQualScore : . . . ..................... ............ ... ... . . . .... .. . . . .. . . . .......... . .................................... . .. ....... . . ... ....
lowQualScore : 0 0 0 000000000000000000000 777777777777 333 555 5 2 0 7777 55 0 3 0 66 7 7 4 6666666666 7 777777777777777777777777777777777777 1 99 3333333 9 9 000 5555
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAATGTCTGGGGNGTAAGGGNAGGGGGTAGNNGGGTTAGCACTC----------AAACTTNAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TTT----AGC----AC-AT--T-ACG--A----------CAGTCACACN-TTTACCCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGAAGAAAATTGCAT--AAAGAA-TCTTCTTTACGCTCA
Reference ( gi|2 ) : CCTTTACCTATATCTACGACCAGAGAGGAAGTTTTAGGAAGTCACATAGGGCAAAGTCTGGGGTGTAAGCGG----GAT-GTTG---TAGCACTC----------AGACTTAAAACAGTCCATTACAAGGACAGAGGTGCGCGCTGGAG--CATTGCAATGCAAGAGACGAACATGTTTGAATTCTGTGATCGGGTGACG-TATTTCGTAGTACATTTTTCA--GTT-TTT----AAT----AC-AT-GT-ACG--A----------CAGTCACACT-TTTACCCTTGTTTACC-------GGTACCTGTATCGATAAACCTTCAACAGAGAAGAAAATTGCAGGAAAAGAA-CATTCTTTACACTCA
gi|1 : AAGTCACATGGGGCAATGTCTGGGGAGTAAGGGGAGGGGGT-GGCGGGTTAGCACTTTACCTGTCTAAAACTTCAAATAATATGTTATAAGGACAGATGCGTGCACCAGGC--CATTGTCATTCAAGAGGCGAAC----------TCAGTGACTGGGTGACG-TTTTTCGCAGTGC--TTGTTA--G-----T----ACC----AC-AT--C-ACG--A----------TAGT
gi|3 : caatttggaaagagaaatGGGGTAT----GT----GATAGTAG---TAGCACTC----------TAAC--AAAAT----CGTTAAAAGTACAGAGGTGTGCGTTGGGGTGCATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGATTGGGCGACGCTTTTTTGTAGTATATTGT-CA--GTT-TTT----AGT----ACCAC-ATCACG--ATAGTACCTTCCAGTCAAACT-TTTATCTTTGTTTGCC-------GGTACCTGTATTGCTAAACCTTCAACaccttccagcaaggacttatatatctctatataattccttgcttccagtcacacattgacctttgattatcggtacctgtattgataaagaagaaaactgcatacagaaacttctttcatccccaaggtccgt
gi|4 : CTC----------AGACTTCAAA-ATTCCATTTCAATGACAGAGGTGTGCGCCGGG--------------------CGAACATGTTTGAATCCAATGGCTTGGCGACA-TGTTTCGTAGTAC-CTTTTCAT-GTT-TTTTTGTACC----AC-AT--C-ACG--AATTTACCTTCCAGTCACACT-TTTACACTTGTTTACC-------AGTACCTGTATTGCTAAACCTTCAA
gi|7 : tgaaacattAAAAAAATCCGTTACAAGGACAGAGGTATACGCCGTGG--CATTGTAATGCAAGAGGTTGATATGTTTGAACACAGTGACCGGGTGACG-TTTTTa
gi|9 : tgtcgctttcacaaattgcTTGCATGGACAGAGGTGTGCGCTGTGG--CATTCTCATGCAAGAGACAAACATGTTTGAATTTAGTGACTGAGCGACG-TTTTT
gi|10 : tctcacttcataaagactCACTAGGG--CAATGTCATGCAAATGGCGAACATGTTTGAATCCAGTGACTGGGCACCA-TTTTTCGTAGTACCTTTTTTGATGTT-TTT----AGT----AC-
gi|6 : ctaGAACATGTTTGGATCCAGTGACTGGGCGACG-TTTTTTGTAGTACATGTT-CA--GTTATTTGA--AATCCCGAT-AT--T-ACCTTC----------CAGTCACACG-TTTACCCTTGTTTATC-------GGTACTTGTCTTGCTAAAACTTCA
gi|11 : tTT-TTT----AGC----AC-TTTGTCACG--A----------TAGT---AGTCTTTACCTTTGTTTACC-------GGTACCTGTATTTATAAACGTTCAACAGA
gi|16 : T----AC-AT--T-ACG--A----------GAGT-AC-CA-TTTACCCTTGTTTATT-------GGTA-------CGATAAACGTTCAACTGAGAAtataatacattaataaataat
gi|17 : ac--A----------CAGTCACTCT-TTTACCATTGATTACC-------GGTACTTGAAATGCTAAACTTTCAACAG
gi|5 : ----------CAGTCACACA-TTTACCTATGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGAAGAAAATTGCAT--AAAGAA-TCTTCTATACACTC
gi|1 : tttgagtaccacctcatgatagttacttc----------CAGTCACACA-TTGACCTTTGATTATC-------GGTACCTGTATTGATAA-----------AGAAGAAAACTGCAT--ACAGAA-ACTTCTTTcgtttggcagtggctggcctcttgt
gi|12 : caatttggaaagagaaataagtcacatggggcaatgtctggggagtaaggggagggggtggcgggttagcactttacctgtctaaaacttcaaataatatgttataaggacagatgcgtgcaccaggccattgtcattcaagaggcgaactcagtgactgggtgacgtttttcgcagtgcttgttagtaccacatcacgatagtaccttccagcaaggacttatatatctctatataattccttgcttc----------CAATCAAACG-TTTACCATTGTTTACC-------TGTACCTTTATTGCTAAACCTTCAACAGAGAAGAAcatccccaaggtccgt
gi|8 : taccttcCT-TTTAACCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGAAGAAAATTGCAT--AAAGAATCA-TCTTAACGCTCAtacagaatctctttttgctcaaggt
gi|13 : -TTTACCTATGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGAAGGAAATTGCAT--AAAGAA-TCTTCTaggtctatttggcaacgactggtcttctt
gi|20 : -TTTACCCATGTTTACC-------GGCACCTGTAATGCTAAACTTTCA
gi|14 : cgACCCTTGTTTATCTGTACCTGGTACCTGTATTGCTAGACCTTCAACAGAGAAGAAACATGCA
gi|15 : -------GGTACATGTATTGCTAAACCTTCAGGAGAGAAGAAAGTTGCAttaagaa
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): CAACAGAAAAGGCAATTGCATAAATCATCTTCTTTACCCTCAAGGTCCGTTTGTC
Unaligned ( gi|19 ): TTCAGCAAGGACTTGTATAATCTATATAATTCTTTGTCTTCAGTCATACACTA
Unaligned ( gi|21 ): TCCGGCAACGACTTATATATCTCTATATAATTCCTTGATTC
Unaligned ( gi|22 ): AGCCAAGGACTTGTATAGATCTCTATATAATTCCTTGGTC
Alignments
lowQualScore : 111 44444444 3333333333 111 22 11 2222222222222 11111 3333333333
lowQualScore : 4 1 999 0 22222222 5555555555 88 1 333 888 0 5 55 55 5 9999999999999 33333 77 1111111111 3 1 1 8888888 3 55 3 1
lowQualScore : . . ... . ........ .......... .. . ... ... . . .. .. . ............. ..... .. .......... . . . ....... . .. . .
lowQualScore : 0 0 777 7 77777777 0000000000 88 0 888 666 7 0 22 88 7 5555555555555 11111 99 8888888888 6 4 0 7777777 6 55 6 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGGG-A-GGGAT-GTCG---TAGCACTC----------AAACT-TAAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TTT----AN---C---ACAT-C---AC--GA----------CAGTCACACNTTTACCCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
Reference ( family-1937 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAATGTCTGGGGNGTAAGGGNAGGGGGTAGNNGGGTTAGCACTC----------AAACT-TNAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TTT----AG---C---ACAT-T---AC--GA----------CAGTCACACNTTTACCCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
gi|1 : AAGTCACATGGGGCAATGTCTGGGGAGTAAGGGGAGGGGGT-GGCGGGTTAGCACTTTACCTGTCTAAAACT-TCAAATAATATGTTATAAGGACAGATGCGTGCACCAGGC--CATTGTCATTCAAGAGGCGAAC----------TCAGTGACTGGGTGACG-TTTTTCGCAGTGC--TTGTTA--G-----T----AC---C---ACAT-C---AC--GA----------TAGT---ACCTT
gi|1 : caatttggaaagagaaat----------CAGTCACACATTGACCTTTGATTATC-------GGTACCTGTATTGATAA-----------AGA-AGAAAACTGCAT--ACAGAAACTTCTTTccagcaaggacttatatatctctatataattccttgcttccagtcacacattgacctttgattatcggtacctgtattgataaagaagaaaactgcatacagaaacttctttcatccccaaggtccgt
gi|10 : caatttggaaagagaaataagtcacatggggcaatgtctggggagtaaggggagggggtggcgggttagcactttacctgtctaaaacttcaaataatatgttataaggacagatgcgtgcaccaggccattgtcattcaagaggcgaactcagtgactgggtgacgtttttcgcagtgcttgttagtaccacatcacgatagtaccttccagcaaggacttatatatctctatataattccttgcttcTACACTAGGG--CAATGTCATGCAAATGGCGAACATGTTTGAATCCAGTGACTGGGCACCA-TTTTTCGTAGTACCTTTTTTGATGTT-TTT----AG---T---ACcatccccaaggtccgt
gi|11 : cTT-TTT----AG---C---ACTT-TGTCAC--GA----------TAGT-A-GTCTTTACCTTTGTTTACC-------GGTACCTGTATTTATAAACGTTCAACAGATATAATACATTA-AT--AAATAAT
gi|12 : ----------CAATCAAACGTTTACCATTGTTTACC-------TGTACCTTTATTGCTAAACCTTCAACAGAGA-AGA-------AT--ACAGAATC-TCTTTTTGCTCA
gi|13 : taccttcTTTACCTATGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGGAAATTGCAT--AAAGAATCTTCTaggt
gi|14 : ACCCTTGTTTATCTGTACCTGGTACCTGTATTGCTAGACCTTCAACAGAGA-AGAAACATGCAT--TAAGAA
gi|15 : -------GGTACATGTATTGCTAAACCTTCAGGAGAGA-AGAAAGTTGCAT--AAAGCATCATCTT
gi|16 : ---ACAT-T---AC--GA----------GAGT-AC-CATTTACCCTTGTTTATT-------GGTAC-------GATAAACGTTCAACTGAGA-Aaaatctcaaggt
gi|17 : actA----------CAGTCACTCTTTTACCATTGATTACC-------GGTACTTGAAATGCTAAACTTTCAACAG
gi|18 : CAACAGAAA-AGGCAATTGCAT--AAATCATCTTCTTTACCCTCA
gi|2 : AAGTCACATAGGGCAAAGTCTGGGGTGTAAGCG----GGAT-GTTG---TAGCACTC----------AGACT-TAAAACAGTCCATTACAAGGACAGAGGTGCGCGCTGGAG--CATTGCAATGCAAGAGACGAACATGTTTGAATTCTGTGATCGGGTGACG-TATTTCGTAGTACATTTTTCA--GTT-TTT----AA---T---ACATGT---AC--GA----------CAGTCACACTTTTACCCTTGTTTACC-------GGTACCTGTATCGATAAACCTTCAACAGAGA-AGAAAATTGCAGGAAAAGAACATTCTTTACACTCAaggtccgtttgtc
gi|20 : cctttacctatatctacgaccagagaggaagttttaggCGTTTACCCATGTTTACC-------GGCACCTGTAATGCTAAACTTTCA
gi|3 : GGGTATGTGATAGTAG---TAGCACTC----------TAAC---AAAAT----CGTTAAAAGTACAGAGGTGTGCGTTGGGGTGCATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGATTGGGCGACGCTTTTTTGTAGTATA-TTGTCA--GTT-TTT----AGTACC---ACAT-C---AC--GATAGTACCTTCCAGTCAAACTTTTATCTTTGTTTGCC-------GGTACCTGTATTGCTAAACCTTCAAC
gi|4 : gCTC----------AGACT-TCAAA-ATTCCATTTCAATGACAGAGGTGTGCGCCGGG--------------------CGAACATGTTTGAATCCAATGGCTTGGCGACA-TGTTTCGTAGTAC-CTTTTCAT-GTT-TTTTTGTAC---C---ACAT-C---AC--GAATTTACCTTCCAGTCACACTTTTACACTTGTTTACC-------AGTACCTGTATTGCTAAACCTTCAA
gi|5 : tgaaacatt----------CAGTCACACATTTACCTATGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTATACACTCa
gi|6 : tttgagtaccacctcatgatagttacttcGAACATGTTTGGATCCAGTGACTGGGCGACG-TTTTTTGTAGTACA-TGTTCA--GTTATTTGAA-AT---CCCGATAT-T---ACCTTC----------CAGTCACACGTTTACCCTTGTTTATC-------GGTACTTGTCTTGCTAAAACTTCAcgtttggcagtggctggcctcttgt
gi|7 : tC----------AAATTGCAAAAAAATCCGTTACAAGGACAGAGGTATACGCCGTGG--CATTGTAATGCAAGAGGTTGATATGTTTGAACACAGTGACCGGGTGACG-TTTTT
gi|8 : tgtcgctttcaCTTTTAACCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCATCTTAACGCTCA
gi|9 : TTGCATGGACAGAGGTGTGCGCTGTGG--CATTCTCATGCAAGAGACAAACATGTTTGAATTTAGTGACTGAGCGACG-TTTTTaggtctatttggcaacgactggtcttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCAGCAAGGACTTGTATAATCTATATAATTCTTTGTCTTCAGTCATACACTA
Unaligned ( gi|21 ): TCCGGCAACGACTTATATATCTCTATATAATTCCTTGATTC
Unaligned ( gi|22 ): AGCCAAGGACTTGTATAGATCTCTATATAATTCCTTGGTC
Alignments
lowQualScore : 5555 1 222 3333333333 1111 11 22 11 6666666666
lowQualScore : 1 1 2 3333 3 3 333 5555555555 5555 44 888 0 5 55 55 5 888 9999 5 777 5 3333333333 3 1 1 8888888 3 55 3 1
lowQualScore : . . . .... . . ... .......... .... .. ... . . .. .. . ... .... . ... . .......... . . . ....... . .. . .
lowQualScore : 0 0 5 0000 3 7 333 0000000000 6666 22 666 7 0 22 88 7 888 4444 3 888 0 6666666666 6 4 0 7777777 6 55 6 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA------C--CCAGTCACACNTTTACCCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
Reference ( family-1937 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGGGA--GGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ANCAC---AT-CACGA----------CAGTCACACNTTTACCCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
gi|1 : AAGTCACATGGGGCAATGTCTGGGGAGTAAGGGGAGGGGGT-GGCGGGTTAGCACTTTACCTGTCTAAAACT-T-CAAATAATATGTTATAAGGACAGATGCGTGCACCAGGC--CATTGTCATTCAAGAGGCGAAC----------TCAGTGACTGGGTGACG-TTTTTCGCAGTGC--TTGTTA--G--------T----ACCAC---AT-CACGA----------TAGT---ACCTT
gi|1 : caatttggaaagagaaat----------CAGTCACACATTGACCTTTGATTATC-------GGTACCTGTATTGATAA-----------AGA-AGAAAACTGCAT--ACAGAAACTTCTTTccagcaaggacttatatatctctatataattccttgcttccagtcacacattgacctttgattatcggtacctgtattgataaagaagaaaactgcatacagaaacttctttcatccccaaggtccgt
gi|10 : caatttggaaagagaaataagtcacatggggcaatgtctggggagtaaggggagggggtggcgggttagcactttacctgtctaaaacttcaaataatatgttataaggacagatgcgtgcaccaggccattgtcattcaagaggcgaactcagtgactgggtgacgtttttcgcagtgcttgttagtaccacatcacgatagtaccttccagcaaggacttatatatctctatataattccttgcttcTACACTAGGG--CAATGTCATGCAAATGGCGAACATGTTTGAATCCAGTGACTGGGCACCA-TTTTTCGTAGTACCTTTTTTGATGTT-TT---T----AGTAC---catccccaaggtccgt
gi|11 : cTT-TT---T----AGCACTTTGT-CACGA----------TAGT-A-GTCTTTACCTTTGTTTACC-------GGTACCTGTATTTATAAACGTTCAACAGATATAATACATTA-AT--AAATAAT
gi|12 : ----------CAATCAAACGTTTACCATTGTTTACC-------TGTACCTTTATTGCTAAACCTTCAACAGAGA-AGA-------AT--ACAGAATC-TCTTTTTGCTCA
gi|13 : taccttcTTTACCTATGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGGAAATTGCAT--AAAGAATCTTCTaggt
gi|14 : ACCCTTGTTTATCTGTACCTGGTACCTGTATTGCTAGACCTTCAACAGAGA-AGAAACATGCAT--TAAGAA
gi|15 : -------GGTACATGTATTGCTAAACCTTCAGGAGAGA-AGAAAGTTGCAT--AAAGCATCATCTT
gi|16 : ----ACTAC---AT-TACGA----------GAGT-AC-CATTTACCCTTGTTTATT-------GGTAC-------GATAAACGTTCAACTGAGA-Aaaatctcaaggt
gi|17 : A----------CAGTCACTCTTTTACCATTGATTACC-------GGTACTTGAAATGCTAAACTTTCAACAG
gi|18 : CAACAGAAA-AGGCAATTGCAT--AAATCATCTTCTTTACCCTCA
gi|2 : AAGTCACATAGGGCAAAGTCTGGGGTGTAAGCG----GGAT-GTTG---TAGCACTC----------AGACT-T-AAAACAGTCCATTACAAGGACAGAGGTGCGCGCTGGAG--CATTGCAATGCAAGAGACGAACATGTTTGAATTCTGTGATCGGGTGACG-TATTTCGTAGTACATTTTTCA--GTT-TT---T----AATAC---ATGTACGA----------CAGTCACACTTTTACCCTTGTTTACC-------GGTACCTGTATCGATAAACCTTCAACAGAGA-AGAAAATTGCAGGAAAAGAACATTCTTTACACTCAaggtccgtttgtc
gi|20 : cctttacctatatctacgaccagagaggaagttttaggCGTTTACCCATGTTTACC-------GGCACCTGTAATGCTAAACTTTCA
gi|3 : GATAGTAG---TAGCACTC----------TAAC----AAAAT----CGTTAAAAGTACAGAGGTGTGCGTTGGGGTGCATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGATTGGGCGACGCTTTTTTGTAGTATA-TTGTCA--GTT-TTTAGT----ACCAC---AT-CACGATAGTACCTTCCAGTCAAACTTTTATCTTTGTTTGCC-------GGTACCTGTATTGCTAAACCTTCAAC
gi|4 : ggggtatgtCTC----------AGACT-TCAAAAT--TCCATTTCAATGACAGAGGTGTGCGCCGGG--------------------CGAACATGTTTGAATCCAATGGCTTGGCGACA-TGTTTCGTAGTAC-CTTTTCAT-GTT-TT---TTTGTACCAC---AT-CACGAATTTACCTTCCAGTCACACTTTTACACTTGTTTACC-------AGTACCTGTATTGCTAAACCTTCAA
gi|5 : tgaaacatt---T----ACCAC---CT-CATGATAGTTACTTCCAGTCACACATTTACCTATGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTATACACTCa
gi|6 : tttgagGAACATGTTTGGATCCAGTGACTGGGCGACG-TTTTTTGTAGTACA-TGTTCA--GTTATT---T----G--AA---AT-CCCGATATTACCTTCCAGTCACACGTTTACCCTTGTTTATC-------GGTACTTGTCTTGCTAAAACTTCAcgtttggcagtggctggcctcttgt
gi|7 : tC----------AAATTGC-AAAAAAATCCGTTACAAGGACAGAGGTATACGCCGTGG--CATTGTAATGCAAGAGGTTGATATGTTTGAACACAGTGACCGGGTGACG-TTTTT
gi|8 : tgtcgctttcaCTTTTAACCTTGTTTACC-------GGTACCTGTATTGCTAAACCTTCAACAGAGA-AGAAAATTGCAT--AAAGAATCATCTTAACGCTCA
gi|9 : TTGCATGGACAGAGGTGTGCGCTGTGG--CATTCTCATGCAAGAGACAAACATGTTTGAATTTAGTGACTGAGCGACG-TTTTTaggtctatttggcaacgactggtcttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCAGCAAGGACTTGTATAATCTATATAATTCTTTGTCTTCAGTCATACACTA
Unaligned ( gi|21 ): TCCGGCAACGACTTATATATCTCTATATAATTCCTTGATTC
Unaligned ( gi|22 ): AGCCAAGGACTTGTATAGATCTCTATATAATTCCTTGGTC
Alignments
lowQualScore : 2222 1 222 3333333333 1111 11 22 11 111111111 8888888888888888888 111111111 111111111
lowQualScore : 1 1 1 3333 3 3 333 5555555555 5555 44 888 0 5 55 55 5 888 111111111 66 888 5 7777777777777777777 666666666 0 2 888888 8888888 000000000 33 33 444 3 55 3 1
lowQualScore : . . . .... . . ... .......... .... .. ... . . .. .. . ... ......... .. ... . ................... ......... . . ...... ....... ......... .. .. ... . .. . .
lowQualScore : 0 0 0 0000 3 7 333 0000000000 6666 22 666 7 0 22 88 7 888 666666666 99 888 0 0000000000000000000 000000000 9 2 222222 7777777 777777777 77 77 777 6 55 6 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----A----CC--AC---AT-CACGA---TACCTT--------C-CAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
Reference ( family-1937 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----A----CC--AC---AT-CACGA--------C--------C-CAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
gi|1 : AAGTCACATGGGGCAATGTCTGGGGAGTAAGGGGAGGGGGT-GGCGGGTTAGCACTTTACCTGTCTAAAACT-T-CAAATAATATGTTATAAGGACAGATGCGTGCACCAGGC--CATTGTCATTCAAGAGGCGAAC----------TCAGTGACTGGGTGACG-TTTTTCGCAGTGC--TTGTTA--G--------T----A----CC--AC---AT-CACGATAGTACCTT--------C-CAGCAAGGACTTATATATCTCTATATAATTCCTTGCTT-CC-------AGTCACACATTGACCTTTGATTATCGGT--ACCTGTATTGATAAAGA-AGAAAACTGCAT--ACAGAAACTTCTTT
gi|10 : caatttggaaagagaaatTACACTAGGG--CAATGTCATGCAAATGGCGAACATGTTTGAATCCAGTGACTGGGCACCA-TTTTTCGTAGTACCTTTTTTGATGTT-TT---T----A----catccccaaggtccgt
gi|11 : cTT-TT---T----A----GC--ACTTTGT-CACGA--------T--------AGTAGT---------C-----TTTA------CCTTTGTTTACC-------GGT---------ACC--TG--TATTTATAAACGT---TCAACAGATATAATACATTA-AT--AAATAATgtac
gi|12 : --------C-CAAT---------CAAACGTTTA------CCATTGTTTACC-------TGT---------ACC--TT--TATTGCTAAACCT---TCAACAGAGA-AGA-------AT--ACAGAATC-TCTTTTTGCTCA
gi|13 : taccttTTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGGAAATTGCAT--AAAGAATCTTCTaggt
gi|14 : A------CCCTTGTTTATCTGTACCTGGT---------ACC--TG--TATTGCTAGACCT---TCAACAGAGA-AGAAACATGCAT--TAAGAA
gi|15 : -------GGT---------ACA--TG--TATTGCTAAACCT---TCAGGAGAGA-AGAAAGTTGCAT--AAAGCATCATCTT
gi|16 : ----A----CT--AC---AT-TACGA--------G-----------AGT----------AC-CATTTA------CCCTTGTTTATT-------GGT---------AC-----------GATAAACGT---TCAACTGAGA-Aaaatctcaaggt
gi|17 : -CAGT---------CACTCTTTTA------CCATTGATTACC-------GGT---------ACT--TG--AAATGCTAAACTT---TCAACAG
gi|18 : aCAACAGAAA-AGGCAATTGCAT--AAATCATCTTCTTTACCCTCA
gi|2 : AAGTCACATAGGGCAAAGTCTGGGGTGTAAGCGG----GAT-GTTG---TAGCACTC----------AGACT-T-AAAACAGTCCATTACAAGGACAGAGGTGCGCGCTGGAG--CATTGCAATGCAAGAGACGAACATGTTTGAATTCTGTGATCGGGTGACG-TATTTCGTAGTACATTTTTCA--GTT-TT---T----A----AT--AC---ATGTACGA-------------------CAGT---------CACACTTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATCGATAAACCT---TCAACAGAGA-AGAAAATTGCAGGAAAAGAACATTCTTTACACTCAaggtccgtttgtc
gi|20 : cctttacctatatctacgaccagagaggaagttttaggCGTTTA------CCCATGTTTACC-------GGC---------ACC--TG--TAATGCTAAACTT---TCA
gi|3 : GATAGTAG---TAGCACTC----------TAAC----AAAAT----CGTTAAAAGTACAGAGGTGTGCGTTGGGGTGCATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGATTGGGCGACGCTTTTTTGTAGTATA-TTGTCA--GTT-TTTAGT----A----CC--AC---AT-CACGATAGTACCTT--------C-CAGT---------CAAACTTTTA------TCTTTGTTTGCC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAAC
gi|4 : ggggtatgtCTC----------AGACT-TCAAAAT--TCCATTTCAATGACAGAGGTGTGCGCCGGG--------------------CGAACATGTTTGAATCCAATGGCTTGGCGACA-TGTTTCGTAGTAC-CTTTTCAT-GTT-TT---TTTGTA----CC--AC---AT-CACGAATTTACCTT--------C-CAGT---------CACACTTTTA------CACTTGTTTACC-------AGT---------ACC--TG--TATTGCTAAACCT---TCAA
gi|5 : tgaaacatt---T----A----CC--AC---CT-CATGA--------TAGTTACTTC-CAGT---------CACACATTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTATACACTCa
gi|6 : tttgagGAACATGTTTGGATCCAGTGACTGGGCGACG-TTTTTTGTAGTACA-TGTTCA--GTTATT---T----GAAATCCCGAT---AT-TACCT--------T--------C-CAGT---------CACACGTTTA------CCCTTGTTTATC-------GGT---------ACT--TG--TCTTGCTAAAACT---TCAcgtttggcagtggctggcctcttgt
gi|7 : tC----------AAATTGC-AAAAAAATCCGTTACAAGGACAGAGGTATACGCCGTGG--CATTGTAATGCAAGAGGTTGATATGTTTGAACACAGTGACCGGGTGACG-TTTTT
gi|8 : tgtcgctttcaCTTTTA------ACCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCATCTTAACGCTCA
gi|9 : TTGCATGGACAGAGGTGTGCGCTGTGG--CATTCTCATGCAAGAGACAAACATGTTTGAATTTAGTGACTGAGCGACG-TTTTTaggtctatttggcaacgactggtcttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCAGCAAGGACTTGTATAATCTATATAATTCTTTGTCTTCAGTCATACACTA
Unaligned ( gi|21 ): TCCGGCAACGACTTATATATCTCTATATAATTCCTTGATTC
Unaligned ( gi|22 ): AGCCAAGGACTTGTATAGATCTCTATATAATTCCTTGGTC
Alignments
lowQualScore : 2222 1 222 3333333333 1111 11 11 11 333333333333 111111111 111111111
lowQualScore : 1 1 1 3333 3 3 333 5555555555 5555 44 888 0 5 77 55 5 888 9999 2 888 5 555555555555 1 666666666 0 2 888888 8888888 000000000 33 33 444 3 55 3 1
lowQualScore : . . . .... . . ... .......... .... .. ... . . .. .. . ... .... . ... . ............ . ......... . . ...... ....... ......... .. .. ... . .. . .
lowQualScore : 0 0 0 0000 3 7 333 0000000000 6666 22 666 7 0 00 88 7 888 4444 5 888 0 666666666666 8 000000000 9 2 222222 7777777 777777777 77 77 777 6 55 6 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
Reference ( family-1937 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
gi|1 : AAGTCACATGGGGCAATGTCTGGGGAGTAAGGGGAGGGGGT-GGCGGGTTAGCACTTTACCTGTCTAAAACT-T-CAAATAATATGTTATAAGGACAGATGCGTGCACCAGGC--CATTGTCATTCAAGAGGCGAAC----------TCAGTGACTGGGTGACG-TTTTTCGCAGTGC--TTGTTA--G--------T----ACCAC---AT-CACGATAGTA---C---CTTCCAGCAAGGACTTATATATCTCTATATAATTCCTTGCTT-CC-------AGTCACACATTGACCTTTGATTATCGGT--ACCTGTATTGATAAAGA-AGAAAACTGCAT--ACAGAAACTTCTTT
gi|10 : caatttggaaagagaaatTACACTAGGG--CAATGTCATGCAAATGGCGAACATGTTTGAATCCAGTGACTGGGCACCA-TTTTTCGTAGTACCTTTTTTGATGTT-TT---T----Acatccccaaggtccgt
gi|11 : cTT-TT---T----AGCACTTTGT-CACGA---TA---G---T----AGT---------C-----TTTA------CCTTTGTTTACC-------GGT---------ACC--TG--TATTTATAAACGT---TCAACAGATATAATACATTA-AT--AAATAATgtac
gi|12 : ---TA---C---CTTCCAAT---------CAAACGTTTA------CCATTGTTTACC-------TGT---------ACC--TT--TATTGCTAAACCT---TCAACAGAGA-AGA-------AT--ACAGAATC-TCTTTTTGCTCA
gi|13 : TTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGGAAATTGCAT--AAAGAATCTTCTaggt
gi|14 : A------CCCTTGTTTATCTGTACCTGGT---------ACC--TG--TATTGCTAGACCT---TCAACAGAGA-AGAAACATGCAT--TAAGAA
gi|15 : -------GGT---------ACA--TG--TATTGCTAAACCT---TCAGGAGAGA-AGAAAGTTGCAT--AAAGCATCATCTT
gi|16 : ----ACTAC---AT-TACGA---GA-------------GT----------AC-CATTTA------CCCTTGTTTATT-------GGT---------AC-----------GATAAACGT---TCAACTGAGA-Aaaatctcaaggt
gi|17 : CAGT---------CACTCTTTTA------CCATTGATTACC-------GGT---------ACT--TG--AAATGCTAAACTT---TCAACAG
gi|18 : aCAACAGAAA-AGGCAATTGCAT--AAATCATCTTCTTTACCCTCA
gi|2 : AAGTCACATAGGGCAAAGTCTGGGGTGTAAGCGG----GAT-GTTG---TAGCACTC----------AGACT-T-AAAACAGTCCATTACAAGGACAGAGGTGCGCGCTGGAG--CATTGCAATGCAAGAGACGAACATGTTTGAATTCTGTGATCGGGTGACG-TATTTCGTAGTACATTTTTCA--GTT-TT---T----AATAC---ATGTACGA----------------CAGT---------CACACTTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATCGATAAACCT---TCAACAGAGA-AGAAAATTGCAGGAAAAGAACATTCTTTACACTCAaggtccgtttgtc
gi|20 : cctttacctatatctacgaccagagaggaagttttaggCGTTTA------CCCATGTTTACC-------GGC---------ACC--TG--TAATGCTAAACTT---TCA
gi|3 : GATAGTAG---TAGCACTC----------TAAC----AAAAT----CGTTAAAAGTACAGAGGTGTGCGTTGGGGTGCATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGATTGGGCGACGCTTTTTTGTAGTATA-TTGTCA--GTT-TTTAGT----ACCAC---AT-CACGATAGTA---C---CTTCCAGT---------CAAACTTTTA------TCTTTGTTTGCC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAAC
gi|4 : ggggtatgtCTC----------AGACT-TCAAAAT--TCCATTTCAATGACAGAGGTGTGCGCCGGG--------------------CGAACATGTTTGAATCCAATGGCTTGGCGACA-TGTTTCGTAGTAC-CTTTTCAT-GTT-TT---TTTGTACCAC---AT-CACGAATTTA---C---CTTCCAGT---------CACACTTTTA------CACTTGTTTACC-------AGT---------ACC--TG--TATTGCTAAACCT---TCAA
gi|5 : tgaaacatt---T----ACCAC---CT-CATGA---TA---GTTACTTCCAGT---------CACACATTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTATACACTCa
gi|6 : tttgagGAACATGTTTGGATCCAGTGACTGGGCGACG-TTTTTTGTAGTACATGTT-CA--GTTATT---T----G--AA---AT-CCCGA---TATTAC---CTTCCAGT---------CACACGTTTA------CCCTTGTTTATC-------GGT---------ACT--TG--TCTTGCTAAAACT---TCAcgtttggcagtggctggcctcttgt
gi|7 : tC----------AAATTGC-AAAAAAATCCGTTACAAGGACAGAGGTATACGCCGTGG--CATTGTAATGCAAGAGGTTGATATGTTTGAACACAGTGACCGGGTGACG-TTTTT
gi|8 : tgtcgctttcaCTTTTA------ACCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCATCTTAACGCTCA
gi|9 : TTGCATGGACAGAGGTGTGCGCTGTGG--CATTCTCATGCAAGAGACAAACATGTTTGAATTTAGTGACTGAGCGACG-TTTTTaggtctatttggcaacgactggtcttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCAGCAAGGACTTGTATAATCTATATAATTCTTTGTCTTCAGTCATACACTA
Unaligned ( gi|21 ): TCCGGCAACGACTTATATATCTCTATATAATTCCTTGATTC
Unaligned ( gi|22 ): AGCCAAGGACTTGTATAGATCTCTATATAATTCCTTGGTC
Alignments
lowQualScore : 2222 1 222 3333333333 1111 11 11 11 333333333333 111111111 111111111
lowQualScore : 1 1 1 3333 3 3 333 5555555555 5555 44 888 0 5 77 55 5 888 9999 2 888 5 555555555555 1 666666666 0 2 888888 8888888 000000000 33 33 444 3 55 3 1
lowQualScore : . . . .... . . ... .......... .... .. ... . . .. .. . ... .... . ... . ............ . ......... . . ...... ....... ......... .. .. ... . .. . .
lowQualScore : 0 0 0 0000 3 7 333 0000000000 6666 22 666 7 0 00 88 7 888 4444 5 888 0 666666666666 8 000000000 9 2 222222 7777777 777777777 77 77 777 6 55 6 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
Reference ( family-1937 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
gi|1 : AAGTCACATGGGGCAATGTCTGGGGAGTAAGGGGAGGGGGT-GGCGGGTTAGCACTTTACCTGTCTAAAACT-T-CAAATAATATGTTATAAGGACAGATGCGTGCACCAGGC--CATTGTCATTCAAGAGGCGAAC----------TCAGTGACTGGGTGACG-TTTTTCGCAGTGC--TTGTTA--G--------T----ACCAC---AT-CACGATAGTA---C---CTTCCAGCAAGGACTTATATATCTCTATATAATTCCTTGCTT-CC-------AGTCACACATTGACCTTTGATTATCGGT--ACCTGTATTGATAAAGA-AGAAAACTGCAT--ACAGAAACTTCTTT
gi|10 : caatttggaaagagaaatTACACTAGGG--CAATGTCATGCAAATGGCGAACATGTTTGAATCCAGTGACTGGGCACCA-TTTTTCGTAGTACCTTTTTTGATGTT-TT---T----Acatccccaaggtccgt
gi|11 : cTT-TT---T----AGCACTTTGT-CACGA---TA---G---T----AGT---------C-----TTTA------CCTTTGTTTACC-------GGT---------ACC--TG--TATTTATAAACGT---TCAACAGATATAATACATTA-AT--AAATAATgtac
gi|12 : ---TA---C---CTTCCAAT---------CAAACGTTTA------CCATTGTTTACC-------TGT---------ACC--TT--TATTGCTAAACCT---TCAACAGAGA-AGA-------AT--ACAGAATC-TCTTTTTGCTCA
gi|13 : TTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGGAAATTGCAT--AAAGAATCTTCTaggt
gi|14 : A------CCCTTGTTTATCTGTACCTGGT---------ACC--TG--TATTGCTAGACCT---TCAACAGAGA-AGAAACATGCAT--TAAGAA
gi|15 : -------GGT---------ACA--TG--TATTGCTAAACCT---TCAGGAGAGA-AGAAAGTTGCAT--AAAGCATCATCTT
gi|16 : ----ACTAC---AT-TACGA---GA-------------GT----------AC-CATTTA------CCCTTGTTTATT-------GGT---------AC-----------GATAAACGT---TCAACTGAGA-Aaaatctcaaggt
gi|17 : CAGT---------CACTCTTTTA------CCATTGATTACC-------GGT---------ACT--TG--AAATGCTAAACTT---TCAACAG
gi|18 : aCAACAGAAA-AGGCAATTGCAT--AAATCATCTTCTTTACCCTCA
gi|2 : AAGTCACATAGGGCAAAGTCTGGGGTGTAAGCGG----GAT-GTTG---TAGCACTC----------AGACT-T-AAAACAGTCCATTACAAGGACAGAGGTGCGCGCTGGAG--CATTGCAATGCAAGAGACGAACATGTTTGAATTCTGTGATCGGGTGACG-TATTTCGTAGTACATTTTTCA--GTT-TT---T----AATAC---ATGTACGA----------------CAGT---------CACACTTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATCGATAAACCT---TCAACAGAGA-AGAAAATTGCAGGAAAAGAACATTCTTTACACTCAaggtccgtttgtc
gi|20 : cctttacctatatctacgaccagagaggaagttttaggCGTTTA------CCCATGTTTACC-------GGC---------ACC--TG--TAATGCTAAACTT---TCA
gi|3 : GATAGTAG---TAGCACTC----------TAAC----AAAAT----CGTTAAAAGTACAGAGGTGTGCGTTGGGGTGCATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGATTGGGCGACGCTTTTTTGTAGTATA-TTGTCA--GTT-TTTAGT----ACCAC---AT-CACGATAGTA---C---CTTCCAGT---------CAAACTTTTA------TCTTTGTTTGCC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAAC
gi|4 : ggggtatgtCTC----------AGACT-TCAAAAT--TCCATTTCAATGACAGAGGTGTGCGCCGGG--------------------CGAACATGTTTGAATCCAATGGCTTGGCGACA-TGTTTCGTAGTAC-CTTTTCAT-GTT-TT---TTTGTACCAC---AT-CACGAATTTA---C---CTTCCAGT---------CACACTTTTA------CACTTGTTTACC-------AGT---------ACC--TG--TATTGCTAAACCT---TCAA
gi|5 : tgaaacatt---T----ACCAC---CT-CATGA---TA---GTTACTTCCAGT---------CACACATTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTATACACTCa
gi|6 : tttgagGAACATGTTTGGATCCAGTGACTGGGCGACG-TTTTTTGTAGTACATGTT-CA--GTTATT---T----G--AA---AT-CCCGA---TATTAC---CTTCCAGT---------CACACGTTTA------CCCTTGTTTATC-------GGT---------ACT--TG--TCTTGCTAAAACT---TCAcgtttggcagtggctggcctcttgt
gi|7 : tC----------AAATTGC-AAAAAAATCCGTTACAAGGACAGAGGTATACGCCGTGG--CATTGTAATGCAAGAGGTTGATATGTTTGAACACAGTGACCGGGTGACG-TTTTT
gi|8 : tgtcgctttcaCTTTTA------ACCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCATCTTAACGCTCA
gi|9 : TTGCATGGACAGAGGTGTGCGCTGTGG--CATTCTCATGCAAGAGACAAACATGTTTGAATTTAGTGACTGAGCGACG-TTTTTaggtctatttggcaacgactggtcttctt
blockSeqs : A T C . A T . . TTC AG GTG C CT AT A TAG TTGT G TTT G TAGTAC T . G . TGTACCT . . . . T GA T C
blockSeqs : . A . . TGC AA G . AT T . . . C . . ATTTAC T . A . . . . . . . . A A
blockSeqs : . TT . G . AT . . . . A . . TAGTTA T . T . . . . . . . . T A
blockSeqs : . . . G . A . . . . C . . TATTAC T . T . . . . . . . . T G
blockSeqs : G . C . . . . C . . TAG T . G . . . . . . . . T
blockSeqs : . . . . . C . . TAC . . T . . . . . . . . A
blockSeqs : . . . . . . GA . . T . . . . . . . . .
blockSeqs : . . . . A . . . . . . . .
blockSeqs : . G . . . . . . . .
blockSeqs : T . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons : ********** T*** AT ********* ****** ********* ** ** ***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT-T-AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT---AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCAGCAAGGACTTGTATAATCTATATAATTCTTTGTCTTCAGTCATACACTA
Unaligned ( gi|21 ): TCCGGCAACGACTTATATATCTCTATATAATTCCTTGATTC
Unaligned ( gi|22 ): AGCCAAGGACTTGTATAGATCTCTATATAATTCCTTGGTC
Alignments
lowQualScore : 2222 1 222 55555555555555555 11 11 11 333333333333 111111111 111111111
lowQualScore : 1 1 1 3333 3 3 333 11111111111111111 44 888 0 5 77 55 5 888 9999 2 888 5 555555555555 1 666666666 0 2 888888 8888888 000000000 33 33 444 3 55 3 1
lowQualScore : . . . .... . . ... ................. .. ... . . .. .. . ... .... . ... . ............ . ......... . . ...... ....... ......... .. .. ... . .. . .
lowQualScore : 0 0 0 0000 3 7 333 22222222222222222 22 666 7 0 00 88 7 888 4444 5 888 0 666666666666 8 000000000 9 2 222222 7777777 777777777 77 77 777 6 55 6 4
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACTTCAAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
Reference ( family-1937 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCACATGGGGCAANGTCTGGGGNGTAAGNGGAGGGGAT-GTCG---TAGCACTC----------AAACT--AAAATAATCCGTTACAAGGACAGAGGTGTGCGCCGGGG--CATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGACTGGGCGACG-TTTTTCGTAGTACATTTTTCA--GTT-TT---T----ACCAC---AT-CACGA---TA---C---CTTCCAGT---------CACACNTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTTTACGCTCA
gi|1 : AAGTCACATGGGGCAATGTCTGGGGAGTAAGGGGAGGGGGT-GGCGGGTTAGCACTTTACCTGTCTAAAACTT-CAAATAATATGTTATAAGGACAGATGCGTGCACCAGGC--CATTGTCATTCAAGAGGCGAAC----------TCAGTGACTGGGTGACG-TTTTTCGCAGTGC--TTGTTA--G--------T----ACCAC---AT-CACGATAGTA---C---CTTCCAGCAAGGACTTATATATCTCTATATAATTCCTTGCTT-CC-------AGTCACACATTGACCTTTGATTATCGGT--ACCTGTATTGATAAAGA-AGAAAACTGCAT--ACAGAAACTTCTTT
gi|10 : caatttggaaagagaaatTACACTAGGG--CAATGTCATGCAAATGGCGAACATGTTTGAATCCAGTGACTGGGCACCA-TTTTTCGTAGTACCTTTTTTGATGTT-TT---T----Acatccccaaggtccgt
gi|11 : cTT-TT---T----AGCACTTTGT-CACGA---TA---G---T----AGT---------C-----TTTA------CCTTTGTTTACC-------GGT---------ACC--TG--TATTTATAAACGT---TCAACAGATATAATACATTA-AT--AAATAATgtac
gi|12 : ---TA---C---CTTCCAAT---------CAAACGTTTA------CCATTGTTTACC-------TGT---------ACC--TT--TATTGCTAAACCT---TCAACAGAGA-AGA-------AT--ACAGAATC-TCTTTTTGCTCA
gi|13 : TTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGGAAATTGCAT--AAAGAATCTTCTaggt
gi|14 : A------CCCTTGTTTATCTGTACCTGGT---------ACC--TG--TATTGCTAGACCT---TCAACAGAGA-AGAAACATGCAT--TAAGAA
gi|15 : -------GGT---------ACA--TG--TATTGCTAAACCT---TCAGGAGAGA-AGAAAGTTGCAT--AAAGCATCATCTT
gi|16 : ----ACTAC---AT-TACGA---GA-------------GT----------AC-CATTTA------CCCTTGTTTATT-------GGT---------AC-----------GATAAACGT---TCAACTGAGA-Aaaatctcaaggt
gi|17 : CAGT---------CACTCTTTTA------CCATTGATTACC-------GGT---------ACT--TG--AAATGCTAAACTT---TCAACAG
gi|18 : aCAACAGAAA-AGGCAATTGCAT--AAATCATCTTCTTTACCCTCA
gi|2 : AAGTCACATAGGGCAAAGTCTGGGGTGTAAGCGG----GAT-GTTG---TAGCACTC----------AGACTT-AAAACAGTCCATTACAAGGACAGAGGTGCGCGCTGGAG--CATTGCAATGCAAGAGACGAACATGTTTGAATTCTGTGATCGGGTGACG-TATTTCGTAGTACATTTTTCA--GTT-TT---T----AATAC---ATGTACGA----------------CAGT---------CACACTTTTA------CCCTTGTTTACC-------GGT---------ACC--TG--TATCGATAAACCT---TCAACAGAGA-AGAAAATTGCAGGAAAAGAACATTCTTTACACTCAaggtccgtttgtc
gi|20 : cctttacctatatctacgaccagagaggaagttttaggCGTTTA------CCCATGTTTACC-------GGC---------ACC--TG--TAATGCTAAACTT---TCA
gi|3 : GATAGTAG---TAGCACTC----------TAAC---AAAAT----CGTTAAAAGTACAGAGGTGTGCGTTGGGGTGCATTGTCATGCAAGAGGCGAACATGTTTGAATCCAGTGATTGGGCGACGCTTTTTTGTAGTATA-TTGTCA--GTT-TTTAGT----ACCAC---AT-CACGATAGTA---C---CTTCCAGT---------CAAACTTTTA------TCTTTGTTTGCC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAAC
gi|4 : ggggtatgtCTC----------AGACTTCAAAAT--TCCATTTCAATGACAGAGGTGTGCGCCGGG--------------------CGAACATGTTTGAATCCAATGGCTTGGCGACA-TGTTTCGTAGTAC-CTTTTCAT-GTT-TT---TTTGTACCAC---AT-CACGAATTTA---C---CTTCCAGT---------CACACTTTTA------CACTTGTTTACC-------AGT---------ACC--TG--TATTGCTAAACCT---TCAA
gi|5 : tgaaacatt---T----ACCAC---CT-CATGA---TA---GTTACTTCCAGT---------CACACATTTA------CCTATGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCTTCTATACACTCa
gi|6 : tttgagGAACATGTTTGGATCCAGTGACTGGGCGACG-TTTTTTGTAGTACATGTT-CA--GTTATT---T----G--AA---AT-CCCGA---TATTAC---CTTCCAGT---------CACACGTTTA------CCCTTGTTTATC-------GGT---------ACT--TG--TCTTGCTAAAACT---TCAcgtttggcagtggctggcctcttgt
gi|7 : tC----------AAATTGCAAAAAAATCCGTTACAAGGACAGAGGTATACGCCGTGG--CATTGTAATGCAAGAGGTTGATATGTTTGAACACAGTGACCGGGTGACG-TTTTT
gi|8 : tgtcgctttcaCTTTTA------ACCTTGTTTACC-------GGT---------ACC--TG--TATTGCTAAACCT---TCAACAGAGA-AGAAAATTGCAT--AAAGAATCATCTTAACGCTCA
gi|9 : TTGCATGGACAGAGGTGTGCGCTGTGG--CATTCTCATGCAAGAGACAAACATGTTTGAATTTAGTGACTGAGCGACG-TTTTTaggtctatttggcaacgactggtcttctt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTCAGCAAGGACTTGTATAATCTATATAATTCTTTGTCTTCAGTCATACACTA
Unaligned ( gi|21 ): TCCGGCAACGACTTATATATCTCTATATAATTCCTTGATTC
Unaligned ( gi|22 ): AGCCAAGGACTTGTATAGATCTCTATATAATTCCTTGGTC