lowQualScore : 1111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 0000000000000 1 1 8888888888888 4444 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 11 1111 1111111111 33333333333333333333 1 1 11 11 22 1 1111 1 22 222 11 1 3 2 77777777777777777 1 1
lowQualScore : 6 6 2222222222222 7 7 3333333333333 0000 6 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 7 999 66 5 0000 0 4 7777777777 1 4 2 4 88888888888888888888 4 2 5 2 0 777 1 5 0 4 2 5 33 11 5 5 88 66 2 9 8 2222 0 5 5 2 6 11 3 888 44 6 5 6 3 6 1 22222222222222222 5 5
lowQualScore : . . ............. . . ............. .... . ................................................................................................................................ . . ... .. . .... . . .......... . . . . .................... . . . . . ... . . . . . . .. .. . . .. .. . . . .... . . . . . .. . ... .. . . . . . . ................. . .
lowQualScore : 0 0 0000000000000 0 0 0000000000000 0000 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 0 8 555 11 2 9999 6 5 2222222222 4 0 6 0 66666666666666666666 3 2 4 0 9 888 3 0 1 2 1 5 88 99 0 0 00 55 2 0 4 1111 7 7 0 5 0 00 3 333 22 7 8 0 6 4 4 00000000000000000 0 0
consensus : AAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAAGAATTTGCGGTTACGGCTTCAATTTATAACACGTTCTCACC-TAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACA--GAAAAA-GGCGCAG--ACTAATTAACATCTCGCCCCGT---------TATTACCTCGTG-TTGCGAGGCGC-AT--------T-----------GTGTGAAGGTAGAGGTTNATAATTAGAACACGTT---ATGTAA-CATAAATATTCGATTTTAATGGGGGCGAAAGTTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATG-TCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTT----ACGTACGTCGCCAAAATAACGT-GTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATAATT-TATATN--T-----TTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
Reference ( gi|1 ) : AAAAAAAAAATACAGAATTCAGATTTGTAATATT-TA--TTAAGAATTGTAGATTCTATTTTGTTTATATTAAGATACGAATAATTAGTGTTTTAACAAGTGAATTGGCGGAAAAGGCTTCAATTTATAACATGTTTTCACC-TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCCCCTGTATCGCAACA--AAAAAATGGTGCAG--ACTAATTAACATCTTGCCCCGT---------TATTACCTCGTG-TTGCGAGGCAC-AT--------T-----------GTATAAAGGTAGACGTTCATAATTAGAACACGTT---ATGTAA-CATAAATATTCGATTTCAATTGGGACGAAAGTTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATG-TCCTTGAATCGAAAACATCAAAATAAATCTCAAACAAAACTAACTGAACGTCATTATCACGGACGTTCACGTCGTCATTTT----ACGTACGTCGCCAAAATAACGT-GTGTTTGTCCGTCGACACCATATGTTAAAATGTGAAGTGTTTACATGATATTGTGTTATATG--CAAACGTAGTACAAAATACAAAAAAATAAACTATTTCAAGATAACATACATATAATTGTATATT--T-----TTTTGAGATTTGGCCGATTTTGACTACTCGTGAACCTAGACCTTTACTATATTGCTTATATCAGATGAAATATGTGTTATTAAACATAGACGGCC
gi|2 : AAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAAGAATTTGCGGTTACGGCTTCAATTTATAACATGTTCTCACC-T
gi|4 : aGATACGAATAATTAGTGTTTT-------------GCGGTTACGGCTTTAATTTATAACACGTTCTCACC-Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctatatcccaacagaaaaaaggtgcaaactcattaacatctcgccccgttattaccttgtgttgcgaggcgcattgtgtaaaggtaaaggtttataataaaacgtttttatgtaacataaatattcgattttaatgggggcgatagttggaaatattgctttttatttgaatgaaattggttttccaccactaatatgtccccgaatcaaaaacatcaaaataaatctcaacaaaaacgtactgaacgtcattatcacggtcgttcacgacatcattttacgtacgtcgccaaaataacgtgtgtatgtccttcgacaccatatattaaaatgtacattgtttacataatattgtgttataggaaaaaaaatagtactaaatacaaaaaataagctgtttcaagctcaatttttgagactgggccgattttgactactcgtgaacc
gi|3 : GGCTTCAATTTATAACACGTTCTCACCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCACCTATATCGCAACA--GAAAATTAGTGCAG--ACTAACTAACATCTCGTCCCGT---------AATTACTTCGTA-TTGCGAGGCAT-AT--------T-----------GTGTAAAGACAGAGGTTCATAATTAGAACAAGTT---ATGTAA-CCTAAATATTCGATTCTAATGGGGGCAAA--TTGGAAAAATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATG-TCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAGCGTCATTATCCCGGTCGTTCACGACGTCATTTT----ACATACGTCGCCAAAATAACGT-GTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTAACATAA---TGTATTATGTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATAATT-T-TATTAAT-----TTTTGAGATAGTGCCGATTTTGACTACTCGTGAACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttgtcacctatatcgcaacaggaaaaaagatgctcattaacatctcgccccgttattaccttgtgttgcgagacgaattgtgtgaaggtagaggtttataattagaacacgttatgaaacataaatattcgattttaattggggcgaaagctagaaatattgctttttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcaaaataaatctcaaaaaaactaactgaacatcattatcaaggccgttctcaccgtcattttacgtacgaagcaaaaataacgcgtgtttgtccttcgccaccatgtattaaaatgtacagtgtttacatgatattgtgttatatgaaaaaatagtttcaagattacacacatataattttatcaatttttgagattgggccgattttgactactcgtgaacctt
gi|5 : cGGCTTCAATTTATAACATGTTCTCAC
gi|5 : acGTTCTCACCTTTATCACAACA--GAAAAAAGGTGC-GTCACTCATTAATATTTCGCCCTGT---------TATTACCTAGCG-TTGCGAGGCGC-AT--------T-----------GTGTAAAGGTAGAGGTTCATAATTAGAACACGTT---ATGAAA-CATAAATATTCCATTTTAATGGGGGCGAAAGCTGGAAATATTGCA--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATG-TCCCCGAATCGAAAACATCGAAATAAATCTTAATGAAAACTAACTGAACAT----------GACGTTCACGACGTCATTTT----ACGTACGTCGCCAAAATAACGT-GTGTTTGTCCTTCTGCACCATATATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAAATAGTTCTAAATAC-AAAAAATAAACTGTTTCAAGATTACATACAT-T-----TATATT--TATCAATTTTGAGATTGGGCCGATTTTGACTACTCGTGAGCCTAGCCCTatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttctcacctttatcacaacagaaaaaaggtgcgtcactcattaatatttcgccctgttattacctagcgttgcgaggcgcattgtgtaaaggtagaggttcataattagaacacgttatgaaacataaatattccattttaatgggggcgaaagctggaaatattgcattttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcgaaataaatcttaatgaaaactaactgaacatgacgttcacgacgtcattttacgtacgtcgccaaaataacgtgtgtttgtccttctgcaccatatattaaaatgtacagtgtttacataatattgtgttatatgaaaaaatagttctaaatacaaaaaataaactgtttcaagattacatacatttatatttatcaattttgagattgggccgattttgactactcgtgagcctagccct
gi|4 : acggcttcaatttataacatgttctcacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTTGTCACCTATATCGCAACAGGAAAAAA-GATGC------TCATTAACATCTCGCCCCGT---------TATTACCTTGTG-TTGCGAGACGA-AT--------T-----------GTGTGAAGGTAGAGGTTTATAATTAGAACACGTT---ATGAAA-CATAAATATTCGATTTTAATTGGGGCGAAAGCTAGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATG-TCCCCGAATCGAAAACATCAAAATAAATCTCAAA-AAAACTAACTGAACATCATTATCAAGGCCGTTCTCACCGTCATTTT----ACGTACGAAGCAAAAATAACGC-GTGTTTGTCCTTCGCCACCATGTATTAAAATGTACAGTGTTTACATGATATTGTGTTATATG----------------------AAAAAATA----GTTTCAAGATTACACACATATAATTTTATCAA--T-----TTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCT
gi|6 : gatacgaataattagtgttttgcggttacggctttaatttataacacgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTCACCTATATCGCAACA--AAAAAA-GGTGCAA--ACTCATTAACATCTCGTCCCGT---------TATTACCTCGTG-T----AGGCGC-AT--------T-----------GTGTGAAGGTAGAGGTTTATAATTAGAACATGTT---ATGAAA-CATAAATAGTCGATTTTAATGGGGGCGAAAGTTGGAAATATTGCT--TTTTATTTA--ACTGAAATTG-GTTTTCCAGCACGAATATGCTCC--GAATCGAAAACATCAAAATAAATCTCAAAGAAAACTAACTGAACTTCATTATCACGGCCGTTCTCGACGTCATTTT----ACGTACGTCGCCAAAATAACGT-GTGTTTGTCCTTCGGCACCATATATTAAATTGTACAGTGTTTTCGTATTATTGTGTTATTTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATAATCAAA------------TTTTGGGATTGGTCTGATTTTGACTACTCGTGAACCTAGt
gi|2 : CCTATATCCCAACA--GAAAAAAGGTGCAA--ACTCATTAACATCTCGCCCCGT---------TATTACCTTGTG-TTGCGAGGCGC-AT--------T-----------GTGTAAAGGTAAAGGTTTATAAT---AAAACGTTTTTATGTAA-CATAAATATTCGATTTTAATGGGGGCGATAGTTGGAAATATTGCT--TTTTATTTG--AATGAAATTG-GTTTTCCACCACTAATATG-TCCCCGAATCAAAAACATCAAAATAAATCTCAACAAAAACGTACTGAACGTCATTATCACGGTCGTTCACGACATCATTTT----ACGTACGTCGCCAAAATAACGT-GTGTATGTCCTTCGACACCATATATTAAAATGTACATTGTTTACATAATATTGTGTTATAGGAAAAAAAATAGTACTAAATAC-AAAAAATAAGCTGTTTCAAGCT----------CAA-----------T-----TTTTGAGACTGGGCCGATTTTGACTACTCGTGAACCtc
gi|9 : aaaaaaagaaatacaggattcagatttatattctaacttaagaattgtagattctattttgttaatatttagatgcgaataattagtgttttaacaaaagaatttgcggttacggcttcaatttataacatgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaTCGTAACA--CAAAA---GCGTGG--ACTAATTGACTTGTCGCCCCAC---------AATTACCTCGTA-CAGTGATTCACAATGAGTGTCAT-----------GTGTGCAAATAGAGGTTAATAA--AGAA---GTT---GT-T-------AATACGCAATTTCAAT
gi|15 : atgtaacaagggttcagtctaatcacacatcaactacaatgttgtttgcataatatttcactccaaacAACA--CACAGATGA--CA---ACTAATTGACATCTCTCCCCAC---------GATTACCCAACG-TTGTGATGTAC-AT--------T-----------Gg
gi|7 : a--AAAAAAGGG-GCAG--ACTAATTAACATCTTGCCCCGT---------TATTACCTTGTG-TTGTGAGGCGC-AT--------A-----------GTATAAAGGTAGAGGTTTATAATAAGAACATGTT---ATGTAA-CCTAATAATTCAATTTTAATGGGGGCGAAAGAAGGAAATATTGCT--TTTTTTTTT--ACTGAAATTG-GTTTTCCAACATGAATATG-TCCTTGAATCGAAAAC----------ATCTCAACGAAAACTAACTGAACATCAATATCACGGTCGTTCA---TGTCATTTT----ACGTACATCGCCAGAATAATGT-GTGTTTGTCCTTCGACACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAGATAGTACTACATAC-AAAAAATGAACTGTTTCAAGATTACACACATATAATT---TATCAAT-----TTTTGAGATTGGGCCGATTCTGAAAACTCac
gi|10 : gGCGTAG--ACTAATTGACATATCTCCACAC---------AATTACCCTATG-TTGTGATATGC-ATGACTCA--T-----------GTGTGAAGGTAGAGGTAAATAATTAAGAC-TATT---ATGT
gi|8 : atgttacaaaagttacaatgagcagtgaactatggcacagcctctccaatgttgattagcgcttttatcaacacttatacacaaac--ACTAATTAACATTCCCCCCCACCCCCATCCCTATTAAC-CATGGTTACCATGCTC-AT--------TAACTGTTGCATGTGTGCACGTAGACGTCAATGATTATATCACATA---GTGCAATCA-AAATATTCAAATTTTGTTGAAAAAGAAATTGAAAATATTTCTGATTTGGTTTTC-AATAAAATTAAGT---CCAA-ACGAATATG-TTGTTGAta
gi|12 : TTGGATTATAAT-GAGTCGGAAGTTTAAAATATTGCTGTTTTTATTTTTTACTCAAATTG-GTTTT-TAACAGAAATAAG-TCTCTG
gi|2 : atgtaatcttccatcttcctGGACATACACA-CGTTATTTTGGCGACGTACGT----AAAATGATGTCGTG
gi|14 : aaaaaaagaaatacaggattcagatttatattctaacttaagaattgtagattctattttgttaatatttagatgcgaataattagtgttttaacaaaagaatttgcggttacggcttcaatttataacatgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctatatcccaacagaaaaaaggtgcaaactcattaacatctcgccccgttattaccttgtgttgcgaggcgcattgtgtaaaggtaaaggtttataataaaacgtttttatgtaacataaatattcgattttaatgggggcgatagttggaaatattgctttttatttgaatgaaattggttttccaccactaatatgtccccgaatcaaaaacatcaaaataaatctcaacaaaaacgtactgaacgtcattatcacggtcgttCTGTTTCAGGAT------CACACAATTTTATCAA--T-----ATTTGAGATTGGACAGAATTTGACTACTGGTGAACCTTGCCCTTttcgacaccatatattaaaatgtacattgtttacataatattgtgttataggaaaaaaaatagtactaaatacaaaaaataagctgtttcaagctcaatttttgagactgggccgattttgactactcgtgaacc
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CTATCCCGTTTGTTTACCTTTGTTGTGACATTCACACTGACTGTCACATGATCAGGTAGAGTACAATAATTAAATCACATACAATCACAATACCTGGATTTTACTGAGCTGAAGGATTTAATATTGCTA
Unaligned ( gi|13 ): GACACGCCTCTCTAATCCTGTGATGTTTACACAGCATTGTAACGAAAACTCGCAACACAAACTAATTTTGACATATGTATCCGAAATTACC
Unaligned ( gi|16 ): GCCCTTTAGTTCCCAAATGAATGGCTAGTTCAATGTTGATTTATATATCACGAAATATAGCT
Unaligned ( gi|17 ): GGATAATATGACTGTTAATTGATTAATTGTAATAAAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 333 1 11 1111111111111 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 111111111 33333333333333333333 11 11 333333333
lowQualScore : 555 5 88 4 4 0 5555555555555 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 5555 3 3 55 333333333 44 0 3 0 44 3 00000000000000000000 44 99999 55 1 666 0 8 3 3 4 55 11 00 4 6 0 1 5 0 77 1 5 55 0 555555555 0
lowQualScore : ... . .. . . . ............. . ........................................................................................................................... .. .... . . .. ......... .. . . . .. . .................... .. ..... .. . ... . . . . . .. .. .. . . . . . . .. . . .. . ......... .
lowQualScore : 000 0 00 0 0 7 7777777777777 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 9999 4 6 00 333333333 66 8 3 4 66 3 77777777777777777777 66 11111 00 0 444 8 0 6 6 0 55 00 66 4 6 4 0 4 4 99 0 7 11 1 555555555 2
consensus : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAACAAG-GAATT-GCGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTGCAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-ATT-TATAN--ATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
Reference ( family-1933 ) : AAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAAGAATTTGCGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGCGCAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-ATT-TATAT--NTTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
gi|1 : AAAAAAAAAATACAGAATTCAGATTTGTAATATT-TA--TTAAGAATTGTAGATTCTATTTTGTTTATATTAAGATACGAATAATTAGTGTTTTAACAAGTGAATTGGCGGAAAAGGCTTCAATTTATAACATGTTTTCACCT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCCCCTGTATCGCAACAA--AAAA--ATGGTGCAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CAC-AT--------T-----------G--TAT-----AA--AGGTAGACGTTCATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTCAATTGGGAC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCTTGAATCGAAAACATCAAAATAAATCTCAAACAAAACTAACTGAACGTCATTATCACGGACGTTCACGTCGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCGTCGACACCATATGTTAAAATGTGAAGTGTTTACATGATATTGTGTTATATG--CAAACGTAGTACAAAATACAAAAAAATAAACTATTTCAAGATAACATACATATA-ATTGTATAT--TTTTTTGAGATTTGGCCGATTTTGACTACTCGTGAACCTAGACCTT
gi|10 : AA--A-CGCGTAG--ACTAATTGACATATCTCCACAC---------AA--TTACCCTATG-TTGTGATA--TGC-ATGACTCA--T-----------G--TGT-----GA--AGGTAGAGGTAAATAATTAAGAC-TA---TTATGTtactatattgcttatatcagatgaaatatgtgttattaaacatagacggcc
gi|11 : atgttacaaaagttacaatgagcagtgaactatggcacagcctctccaatgttgattagcgcttttatcaacacttatacacCCCGT---------TTGTTTACCTT-TG-TTGTGACATTCAC-AC--------T-----------GACTGTCACATGATCAGGTAGAGTACAATAATTAAATCAC------ATACAATCAC-AATACCTGGA-TTTTACT--GAGCTGAAGGATTT---AATATTGCT--ta
gi|12 : ctat-TTGGA-TTATAATGAGT-C-GGAAG--TTTAAAATATTGCTGTTTTTATTTTTTACTCAAATTG-GTTTT-TAACAGAAATAAGTCTCTGa
gi|14 : atgtaatcttccatcttcctCTGTTTCAGGATCACACA---AT---TT-TATCA--ATATTTGAGATTGGACAGAATTTGACTACTGGTGAACCTTGCCCTT
gi|15 : --ACTAATTGACATCTCTCCCCAC---------GA--TTACCCAACG-TTGTGATG--TAC-AT--------T-----------G--
gi|2 : aaacacacagatgacaAAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAAGAATTTGCGGTTACGGCTTCAATTTATAACATGTTCTCACCT-ac
gi|2 : aCACCTATATCCCAACAG--AAAA--AAGGTGCAA--ACTCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAAAGGTTTATAAT---AAAACGTTTTTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GATAG--TTGGAAATATTGCT--TTTTATTTG--AATGAAATTG-GTTTTCCACCACTAATATGTCCCCGAATCAAAAACATCAAAATAAATCTCAACAAAAACGTACTGAACGTCATTATCACGGTCGTTCACGACATCATTTTACGTACGTCGCCAAAATAACGTGTGTATGTCCTTCGACACCATATATTAAAATGTACATTGTTTACATAATATTGTGTTATAGGAAAAAAAATAGTACTAAATAC-AAAAAATAAGCTGTTTCAAGCTCA----------------------ATTTTTGAGACTGGGCCGATTTTGACTACTCGTGAACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctatatcccaacagaaaaaaggtgcaaactcattaacatctcgccccgttattaccttgtgttgcgaggcgcattgtgtaaaggtaaaggtttataataaaacgtttttatgtaacataaatattcgattttaatgggggcgatagttggaaatattgctttttatttgaatgaaattggttttccaccactaatatgtccccgaatcaaaaacatcaaaataaatctcaacaaaaacgtactgaacgtcattatcacggtcgttcacgacatcattttacgtacgtcgccaaaataacgtgtgtatgtccttcgacaccatatattaaaatgtacattgtttacataatattgtgttataggaaaaaaaatagtactaaatacaaaaaataagctgtttcaagctcaatttttgagactgggccgattttgactactcgtgaacc
gi|3 : aaaaaaagaaatacaggattcagatttatattctaacttaagaattgtagattctattttgttaatatttagatgcgaataattagtgttttaacaaaagaatttgcggttacggcttcaatttataacatgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGCTTCAATTTATAACACGTTCTCACCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCACCTATATCGCAACAG--AAAATTA-G-TGCAG--ACTAACTAACATCTCGTCCCGT---------AA--TTACTTCGTA-TTGCGAGG--CAT-AT--------T-----------G--TGT-----AA--AGACAGAGGTTCATAATTAGAACAAG---TTATGTAA-CCTAAATA-TTCGA-TTCTAATGGGGGC-AAA----TTGGAAAAATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAGCGTCATTATCCCGGTCGTTCACGACGTCATTTTACATACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTAACATAA---TGTATTATGTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-ATT-T-TATTAATTTTTGAGATAGTGCCGATTTTGACTACTCGTGAAC
gi|4 : GATACGAATAATTAGTGTTTT-------------GCGGTTACGGCTTTAATTTATAACACGTTCTCACCT-
gi|4 : GTTGTCACCTATATCGCAACAGGAAAAA--A-GATGC------TCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGA--CGA-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACACG---TTATGAAA-CATAAATA-TTCGA-TTTTAATTGGGGC-GAAAG--CTAGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAA-AAAAACTAACTGAACATCATTATCAAGGCCGTTCTCACCGTCATTTTACGTACGAAGCAAAAATAACGCGTGTTTGTCCTTCGCCACCATGTATTAAAATGTACAGTGTTTACATGATATTGTGTTATATG--AAAAAATA------------------------GTTTCAAGATTACACACATATA-ATT-T-TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttgtcacctatatcgcaacaggaaaaaagatgctcattaacatctcgccccgttattaccttgtgttgcgagacgaattgtgtgaaggtagaggtttataattagaacacgttatgaaacataaatattcgattttaattggggcgaaagctagaaatattgctttttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcaaaataaatctcaaaaaaactaactgaacatcattatcaaggccgttctcaccgtcattttacgtacgaagcaaaaataacgcgtgtttgtccttcgccaccatgtattaaaatgtacagtgtttacatgatattgtgttatatgaaaaaatagtttcaagattacacacatataattttatcaatttttgagattgggccgattttgactactcgtgaacctt
gi|5 : gatacgaataattagtgttttgcggttacggctttaatttataacacgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGGCTTCAATTTATAACATGTTCTCACt
gi|5 : GTTCTCACCTTTATCACAACAG--AAAA--AAGGTGC-GTCACTCATTAATATTTCGCCCTGT---------TA--TTACCTAGCG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAGAGGTTCATAATTAGAACACG---TTATGAAA-CATAAATA-TTCCA-TTTTAATGGGGGC-GAAAG--CTGGAAATATTGCA--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCGAAATAAATCTTAATGAAAACTAACTGAACAT----------GACGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCTGCACCATATATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAAATAGTTCTAAATAC-AAAAAATAAACTGTTTCAAGATTACATACATTTATATT-TAT-C--AATTTTGAGATTGGGCCGATTTTGACTACTCGTGAGCCTAGCCCTatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttctcacctttatcacaacagaaaaaaggtgcgtcactcattaatatttcgccctgttattacctagcgttgcgaggcgcattgtgtaaaggtagaggttcataattagaacacgttatgaaacataaatattccattttaatgggggcgaaagctggaaatattgcattttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcgaaataaatcttaatgaaaactaactgaacatgacgttcacgacgtcattttacgtacgtcgccaaaataacgtgtgtttgtccttctgcaccatatattaaaatgtacagtgtttacataatattgtgttatatgaaaaaatagttctaaatacaaaaaataaactgtttcaagattacatacatttatatttatcaattttgagattgggccgattttgactactcgtgagcctagccct
gi|6 : acggcttcaatttataacatgttctcacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTCACCTATATCGCAACAA--AAAA--A-GGTGCAA--ACTCATTAACATCTCGTCCCGT---------TA--TTACCTCGTG-T----AGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACATG---TTATGAAA-CATAAATA-GTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTA--ACTGAAATTG-GTTTTCCAGCACGAATATG-CTCCGAATCGAAAACATCAAAATAAATCTCAAAGAAAACTAACTGAACTTCATTATCACGGCCGTTCTCGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATATATTAAATTGTACAGTGTTTTCGTATTATTGTGTTATTTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-T-CAAA-----TTTTGGGATTGGTCTGATTTTGACTACTCGTGAACCTAGTC
gi|7 : --AAAA--A-GGGGCAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTTGTG-TTGTGAGG--CGC-AT--------A-----------G--TAT-----AA--AGGTAGAGGTTTATAATAAGAACATG---TTATGTAA-CCTAATAA-TTCAA-TTTTAATGGGGGC-GAAAG--AAGGAAATATTGCT--TTTTTTTTT--ACTGAAATTG-GTTTTCCAACATGAATATGTCCTTGAATCGAAAAC----------ATCTCAACGAAAACTAACTGAACATCAATATCACGGTCGTTC---ATGTCATTTTACGTACATCGCCAGAATAATGTGTGTTTGTCCTTCGACACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAGATAGTACTACATAC-AAAAAATGAACTGTTTCAAGATTACACACATATA-ATT-TATCA--ATTTTTGAGATTGGGCCGATTCTGAAAACTC
gi|8 : ga--ACTAATTAACATTCCCCCCCACCCCCATCCCTA--TTAAC-CATGGTTACCATG--CTC-AT--------TAACTGTTGCATG--TGT-----GC--ACGTAGACGTCAATGATTATATCACA---TAGTGCAATCA-AAATA-TTCAAATTTTGTTGAAAAA-GAAA---TTGAAAATATTTCTGATTTGGTTTTC-AATAAAATTAAGT---CCAA-ACGAATATGT
gi|9 : TCGTAACAC--AAAA-----GCGTGG--ACTAATTGACTTGTCGCCCCAC---------AA--TTACCTCGTA-CAGTGATT--CACAATGAGTGTCAT-----------G--TGT-----GC--AAATAGAGGTTAATAA--AGAA---G---TTGT-T-------AATA-CGCAA-TTTCAATGtgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GACACGCCTCTCTAATCCTGTGATGTTTACACAGCATTGTAACGAAAACTCGCAACACAAACTAATTTTGACATATGTATCCGAAATTACC
Unaligned ( gi|16 ): GCCCTTTAGTTCCCAAATGAATGGCTAGTTCAATGTTGATTTATATATCACGAAATATAGCT
Unaligned ( gi|17 ): GGATAATATGACTGTTAATTGATTAATTGTAATAAAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 11 4444444444444444 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 111111111 33333333333333333333 11 11 111111111111
lowQualScore : 111 5 88 1 1 4444444444444444 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 0000 999999 333333333 44 0 3 0 44 3 00000000000000000000 44 99999 55 1 666 0 8 3 3 4 55 11 00 4 6 0 1 5 0 77 1 5 333333333333 3 0
lowQualScore : ... . .. . . ................ . ........................................................................................................................... .. .... ...... ......... .. . . . .. . .................... .. ..... .. . ... . . . . . .. .. .. . . . . . . .. . . ............ . .
lowQualScore : 000 0 00 0 0 0000000000000000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 0000 555555 333333333 66 8 3 4 66 3 77777777777777777777 66 11111 00 0 444 8 0 6 6 0 55 00 66 4 6 4 0 4 4 99 0 7 111111111111 2 2
consensus : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-TT-TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
Reference ( family-1933 ) : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-TT-TATANATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
gi|1 : AAAAAAAAAATACAGAATTCAGATTTGTAATATT-TA--TTAAGAATTGTAGATTCTATTTTGTTTATATTAAGATACGAATAATTAGTGTTTTAAC-AAGTGAA-TTGGCGGAAAAGGCTTCAATTTATAACATGTTTTCACCT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCCCCTGTATCGCAACAA--AAAA--ATGGTG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CAC-AT--------T-----------G--TAT-----AA--AGGTAGACGTTCATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTCAATTGGGAC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCTTGAATCGAAAACATCAAAATAAATCTCAAACAAAACTAACTGAACGTCATTATCACGGACGTTCACGTCGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCGTCGACACCATATGTTAAAATGTGAAGTGTTTACATGATATTGTGTTATATG--CAAACGTAGTACAAAATACAAAAAAATAAACTATTTCAAGATAACATACATATA-A-TTGTATATTTTTTTGAGATTTGGCCGATTTTGACTACTCGTGAACCTAGACCTT
gi|10 : AA--A-CGCG-TAG--ACTAATTGACATATCTCCACAC---------AA--TTACCCTATG-TTGTGATA--TGC-ATGACTCA--T-----------G--TGT-----GA--AGGTAGAGGTAAATAATTAAGAC-TA---TTATGTtactatattgcttatatcagatgaaatatgtgttattaaacatagacggcc
gi|11 : atgttacaaaagttacaatgagcagtgaactatggcacagcctctccaatgttgattagcgcttttatcaacacttatacacCCCGT---------TTGTTTACCTT-TG-TTGTGACATTCAC-AC--------T-----------GACTGTCACATGATCAGGTAGAGTACAATAATTAAATCAC------ATACAATCAC-AATACCTGGA-TTTTACT--GAGCTGAAGGATTT---AATATTGCT--ta
gi|12 : ctat-TTGGA-TTATAATGAGT-C-GGAAG--TTTAAAATATTGCTGTTTTTATTTTTTACTCAAATTG-GTTTT-TAACAGAAATAAGTCTCTGa
gi|14 : atgtaatcttccatcttcctCTGTTTCAGGATCACACA---AT----TT-TATCAATATTTGAGATTGGACAGAATTTGACTACTGGTGAACCTTGCCCTT
gi|15 : --A-GATGACA---ACTAATTGACATCTCTCCCCAC---------GA--TTACCCAACG-TTGTGATG--TAC-AT--------T-----------G--
gi|2 : aaacacacAAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAA-GAATTTG-CGGTTACGGCTTCAATTTATAACATGTTCTCACCT-ac
gi|2 : aCACCTATATCCCAACAG--AAAAA-A-GGTG-CAA--ACTCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAAAGGTTTATAAT---AAAACGTTTTTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GATAG--TTGGAAATATTGCT--TTTTATTTG--AATGAAATTG-GTTTTCCACCACTAATATGTCCCCGAATCAAAAACATCAAAATAAATCTCAACAAAAACGTACTGAACGTCATTATCACGGTCGTTCACGACATCATTTTACGTACGTCGCCAAAATAACGTGTGTATGTCCTTCGACACCATATATTAAAATGTACATTGTTTACATAATATTGTGTTATAGGAAAAAAAATAGTACTAAATAC-AAAAAATAAGCTGTTTCAAGCTCA---------------------ATTTTTGAGACTGGGCCGATTTTGACTACTCGTGAACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctatatcccaacagaaaaaaggtgcaaactcattaacatctcgccccgttattaccttgtgttgcgaggcgcattgtgtaaaggtaaaggtttataataaaacgtttttatgtaacataaatattcgattttaatgggggcgatagttggaaatattgctttttatttgaatgaaattggttttccaccactaatatgtccccgaatcaaaaacatcaaaataaatctcaacaaaaacgtactgaacgtcattatcacggtcgttcacgacatcattttacgtacgtcgccaaaataacgtgtgtatgtccttcgacaccatatattaaaatgtacattgtttacataatattgtgttataggaaaaaaaatagtactaaatacaaaaaataagctgtttcaagctcaatttttgagactgggccgattttgactactcgtgaacc
gi|3 : aaaaaaagaaatacaggattcagatttatattctaacttaagaattgtagattctattttgttaatatttagatgcgaataattagtgttttaacaaaagaatttgcggttacggcttcaatttataacatgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGCTTCAATTTATAACACGTTCTCACCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCACCTATATCGCAACAG--AAAATTA-G-TG-CAG--ACTAACTAACATCTCGTCCCGT---------AA--TTACTTCGTA-TTGCGAGG--CAT-AT--------T-----------G--TGT-----AA--AGACAGAGGTTCATAATTAGAACAAG---TTATGTAA-CCTAAATA-TTCGA-TTCTAATGGGGGC-AAA----TTGGAAAAATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAGCGTCATTATCCCGGTCGTTCACGACGTCATTTTACATACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTAACATAA---TGTATTATGTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-ATTT-TATTAATTTTTGAGATAGTGCCGATTTTGACTACTCGTGAAC
gi|4 : GATACGAATAATTAGTGTTTT--------------G-CGGTTACGGCTTTAATTTATAACACGTTCTCACCT-
gi|4 : GTTGTCACCTATATCGCAACAGGAAAAA--A-GATG-C------TCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGA--CGA-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACACG---TTATGAAA-CATAAATA-TTCGA-TTTTAATTGGGGC-GAAAG--CTAGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAA-AAAAACTAACTGAACATCATTATCAAGGCCGTTCTCACCGTCATTTTACGTACGAAGCAAAAATAACGCGTGTTTGTCCTTCGCCACCATGTATTAAAATGTACAGTGTTTACATGATATTGTGTTATATG--AAAAAATA------------------------GTTTCAAGATTACACACATATA-ATTT-TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttgtcacctatatcgcaacaggaaaaaagatgctcattaacatctcgccccgttattaccttgtgttgcgagacgaattgtgtgaaggtagaggtttataattagaacacgttatgaaacataaatattcgattttaattggggcgaaagctagaaatattgctttttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcaaaataaatctcaaaaaaactaactgaacatcattatcaaggccgttctcaccgtcattttacgtacgaagcaaaaataacgcgtgtttgtccttcgccaccatgtattaaaatgtacagtgtttacatgatattgtgttatatgaaaaaatagtttcaagattacacacatataattttatcaatttttgagattgggccgattttgactactcgtgaacctt
gi|5 : gatacgaataattagtgttttgcggttacggctttaatttataacacgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGGCTTCAATTTATAACATGTTCTCACt
gi|5 : GTTCTCACCTTTATCACAACAG--AAAA--AAGGTG-C-GTCACTCATTAATATTTCGCCCTGT---------TA--TTACCTAGCG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAGAGGTTCATAATTAGAACACG---TTATGAAA-CATAAATA-TTCCA-TTTTAATGGGGGC-GAAAG--CTGGAAATATTGCA--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCGAAATAAATCTTAATGAAAACTAACTGAACAT----------GACGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCTGCACCATATATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAAATAGTTCTAAATAC-AAAAAATAAACTGTTTCAAGATTACATACATTTATA-TT-TATCAA-TTTTGAGATTGGGCCGATTTTGACTACTCGTGAGCCTAGCCCTatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttctcacctttatcacaacagaaaaaaggtgcgtcactcattaatatttcgccctgttattacctagcgttgcgaggcgcattgtgtaaaggtagaggttcataattagaacacgttatgaaacataaatattccattttaatgggggcgaaagctggaaatattgcattttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcgaaataaatcttaatgaaaactaactgaacatgacgttcacgacgtcattttacgtacgtcgccaaaataacgtgtgtttgtccttctgcaccatatattaaaatgtacagtgtttacataatattgtgttatatgaaaaaatagttctaaatacaaaaaataaactgtttcaagattacatacatttatatttatcaattttgagattgggccgattttgactactcgtgagcctagccct
gi|6 : acggcttcaatttataacatgttctcacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTCACCTATATCGCAACAA--AAAA--A-GGTG-CAA--ACTCATTAACATCTCGTCCCGT---------TA--TTACCTCGTG-T----AGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACATG---TTATGAAA-CATAAATA-GTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTA--ACTGAAATTG-GTTTTCCAGCACGAATATG-CTCCGAATCGAAAACATCAAAATAAATCTCAAAGAAAACTAACTGAACTTCATTATCACGGCCGTTCTCGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATATATTAAATTGTACAGTGTTTTCGTATTATTGTGTTATTTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-T----CAAA-TTTTGGGATTGGTCTGATTTTGACTACTCGTGAACCTAGTC
gi|7 : --AAAA--A-GGGG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTTGTG-TTGTGAGG--CGC-AT--------A-----------G--TAT-----AA--AGGTAGAGGTTTATAATAAGAACATG---TTATGTAA-CCTAATAA-TTCAA-TTTTAATGGGGGC-GAAAG--AAGGAAATATTGCT--TTTTTTTTT--ACTGAAATTG-GTTTTCCAACATGAATATGTCCTTGAATCGAAAAC----------ATCTCAACGAAAACTAACTGAACATCAATATCACGGTCGTTC---ATGTCATTTTACGTACATCGCCAGAATAATGTGTGTTTGTCCTTCGACACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAGATAGTACTACATAC-AAAAAATGAACTGTTTCAAGATTACACACATATA-A-TT-TATCAATTTTTGAGATTGGGCCGATTCTGAAAACTC
gi|8 : ga--ACTAATTAACATTCCCCCCCACCCCCATCCCTA--TTAAC-CATGGTTACCATG--CTC-AT--------TAACTGTTGCATG--TGT-----GC--ACGTAGACGTCAATGATTATATCACA---TAGTGCAATCA-AAATA-TTCAAATTTTGTTGAAAAA-GAAA---TTGAAAATATTTCTGATTTGGTTTTC-AATAAAATTAAGT---CCAA-ACGAATATGT
gi|9 : TCGTAACAC--AAAA--G-CGTG---G--ACTAATTGACTTGTCGCCCCAC---------AA--TTACCTCGTA-CAGTGATT--CACAATGAGTGTCAT-----------G--TGT-----GC--AAATAGAGGTTAATAA--AGAA---G---TTGT-T-------AATA-CGCAA-TTTCAATGtgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GACACGCCTCTCTAATCCTGTGATGTTTACACAGCATTGTAACGAAAACTCGCAACACAAACTAATTTTGACATATGTATCCGAAATTACC
Unaligned ( gi|16 ): GCCCTTTAGTTCCCAAATGAATGGCTAGTTCAATGTTGATTTATATATCACGAAATATAGCT
Unaligned ( gi|17 ): GGATAATATGACTGTTAATTGATTAATTGTAATAAAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 11 4444444444444444 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 111111111 33333333333333333333 11 11 222222222
lowQualScore : 111 5 88 1 1 4444444444444444 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 0000 999999 333333333 44 0 3 0 44 3 00000000000000000000 44 99999 55 1 666 0 8 3 3 4 55 11 00 4 0 6 0 1 5 0 77 1 5 111111111 0 0
lowQualScore : ... . .. . . ................ . ........................................................................................................................... .. .... ...... ......... .. . . . .. . .................... .. ..... .. . ... . . . . . .. .. .. . . . . . . . .. . . ......... . .
lowQualScore : 000 0 00 0 0 0000000000000000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 0000 555555 333333333 66 8 3 4 66 3 77777777777777777777 66 11111 00 0 444 8 0 6 6 0 55 00 66 4 1 6 4 0 1 4 99 0 7 000000000 4 2
consensus : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-TT---TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
Reference ( family-1933 ) : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-TT---TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
gi|1 : AAAAAAAAAATACAGAATTCAGATTTGTAATATT-TA--TTAAGAATTGTAGATTCTATTTTGTTTATATTAAGATACGAATAATTAGTGTTTTAAC-AAGTGAA-TTGGCGGAAAAGGCTTCAATTTATAACATGTTTTCACCT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCCCCTGTATCGCAACAA--AAAA--ATGGTG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CAC-AT--------T-----------G--TAT-----AA--AGGTAGACGTTCATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTCAATTGGGAC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCTTGAATCGAAAACATCAAAATAAATCTCAAACAAAACTAACTGAACGTCATTATCACGGACGTTCACGTCGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCGTCGACACCATATGTTAAAATGTGAAGTGTTTACATGATATTGTGTTATATG--CAAACGTAGTACAAAATACAAAAAAATAAACTATTTCAAGATAACATACATATA-A-TTGTATATT--TTTTTGAGATTTGGCCGATTTTGACTACTCGTGAACCTAGACCTT
gi|10 : AA--A-CGCG-TAG--ACTAATTGACATATCTCCACAC---------AA--TTACCCTATG-TTGTGATA--TGC-ATGACTCA--T-----------G--TGT-----GA--AGGTAGAGGTAAATAATTAAGAC-TA---TTATGTtactatattgcttatatcagatgaaatatgtgttattaaacatagacggcc
gi|11 : atgttacaaaagttacaatgagcagtgaactatggcacagcctctccaatgttgattagcgcttttatcaacacttatacacCCCGT---------TTGTTTACCTT-TG-TTGTGACATTCAC-AC--------T-----------GACTGTCACATGATCAGGTAGAGTACAATAATTAAATCAC------ATACAATCAC-AATACCTGGA-TTTTACT--GAGCTGAAGGATTT---AATATTGCT--ta
gi|12 : ctat-TTGGA-TTATAATGAGT-C-GGAAG--TTTAAAATATTGCTGTTTTTATTTTTTACTCAAATTG-GTTTT-TAACAGAAATAAGTCTCTGa
gi|14 : atgtaatcttccatcttcctCTGTTTCAGGATCACACA---AT----TT---TATCAATATTTGAGATTGGACAGAATTTGACTACTGGTGAACCTTGCCCTT
gi|15 : --A-GATGACA---ACTAATTGACATCTCTCCCCAC---------GA--TTACCCAACG-TTGTGATG--TAC-AT--------T-----------G--
gi|2 : aaacacacAAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAA-GAATTTG-CGGTTACGGCTTCAATTTATAACATGTTCTCACCT-ac
gi|2 : aCACCTATATCCCAACAG--AAAAA-A-GGTG-CAA--ACTCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAAAGGTTTATAAT---AAAACGTTTTTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GATAG--TTGGAAATATTGCT--TTTTATTTG--AATGAAATTG-GTTTTCCACCACTAATATGTCCCCGAATCAAAAACATCAAAATAAATCTCAACAAAAACGTACTGAACGTCATTATCACGGTCGTTCACGACATCATTTTACGTACGTCGCCAAAATAACGTGTGTATGTCCTTCGACACCATATATTAAAATGTACATTGTTTACATAATATTGTGTTATAGGAAAAAAAATAGTACTAAATAC-AAAAAATAAGCTGTTTCAAG----C-------------------TCAATTTTTGAGACTGGGCCGATTTTGACTACTCGTGAACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctatatcccaacagaaaaaaggtgcaaactcattaacatctcgccccgttattaccttgtgttgcgaggcgcattgtgtaaaggtaaaggtttataataaaacgtttttatgtaacataaatattcgattttaatgggggcgatagttggaaatattgctttttatttgaatgaaattggttttccaccactaatatgtccccgaatcaaaaacatcaaaataaatctcaacaaaaacgtactgaacgtcattatcacggtcgttcacgacatcattttacgtacgtcgccaaaataacgtgtgtatgtccttcgacaccatatattaaaatgtacattgtttacataatattgtgttataggaaaaaaaatagtactaaatacaaaaaataagctgtttcaagctcaatttttgagactgggccgattttgactactcgtgaacc
gi|3 : aaaaaaagaaatacaggattcagatttatattctaacttaagaattgtagattctattttgttaatatttagatgcgaataattagtgttttaacaaaagaatttgcggttacggcttcaatttataacatgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGCTTCAATTTATAACACGTTCTCACCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCACCTATATCGCAACAG--AAAATTA-G-TG-CAG--ACTAACTAACATCTCGTCCCGT---------AA--TTACTTCGTA-TTGCGAGG--CAT-AT--------T-----------G--TGT-----AA--AGACAGAGGTTCATAATTAGAACAAG---TTATGTAA-CCTAAATA-TTCGA-TTCTAATGGGGGC-AAA----TTGGAAAAATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAGCGTCATTATCCCGGTCGTTCACGACGTCATTTTACATACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTAACATAA---TGTATTATGTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-ATTT---TATTAATTTTTGAGATAGTGCCGATTTTGACTACTCGTGAAC
gi|4 : GATACGAATAATTAGTGTTTT--------------G-CGGTTACGGCTTTAATTTATAACACGTTCTCACCT-
gi|4 : GTTGTCACCTATATCGCAACAGGAAAAA--A-GATG-C------TCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGA--CGA-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACACG---TTATGAAA-CATAAATA-TTCGA-TTTTAATTGGGGC-GAAAG--CTAGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAA-AAAAACTAACTGAACATCATTATCAAGGCCGTTCTCACCGTCATTTTACGTACGAAGCAAAAATAACGCGTGTTTGTCCTTCGCCACCATGTATTAAAATGTACAGTGTTTACATGATATTGTGTTATATG--AAAAAATA------------------------GTTTCAAGATTACACACATATA-ATTT---TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttgtcacctatatcgcaacaggaaaaaagatgctcattaacatctcgccccgttattaccttgtgttgcgagacgaattgtgtgaaggtagaggtttataattagaacacgttatgaaacataaatattcgattttaattggggcgaaagctagaaatattgctttttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcaaaataaatctcaaaaaaactaactgaacatcattatcaaggccgttctcaccgtcattttacgtacgaagcaaaaataacgcgtgtttgtccttcgccaccatgtattaaaatgtacagtgtttacatgatattgtgttatatgaaaaaatagtttcaagattacacacatataattttatcaatttttgagattgggccgattttgactactcgtgaacctt
gi|5 : gatacgaataattagtgttttgcggttacggctttaatttataacacgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGGCTTCAATTTATAACATGTTCTCACt
gi|5 : GTTCTCACCTTTATCACAACAG--AAAA--AAGGTG-C-GTCACTCATTAATATTTCGCCCTGT---------TA--TTACCTAGCG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAGAGGTTCATAATTAGAACACG---TTATGAAA-CATAAATA-TTCCA-TTTTAATGGGGGC-GAAAG--CTGGAAATATTGCA--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCGAAATAAATCTTAATGAAAACTAACTGAACAT----------GACGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCTGCACCATATATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAAATAGTTCTAAATAC-AAAAAATAAACTGTTTCAAGATTACATACATTTATA-TT---TATCAA-TTTTGAGATTGGGCCGATTTTGACTACTCGTGAGCCTAGCCCTatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttctcacctttatcacaacagaaaaaaggtgcgtcactcattaatatttcgccctgttattacctagcgttgcgaggcgcattgtgtaaaggtagaggttcataattagaacacgttatgaaacataaatattccattttaatgggggcgaaagctggaaatattgcattttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcgaaataaatcttaatgaaaactaactgaacatgacgttcacgacgtcattttacgtacgtcgccaaaataacgtgtgtttgtccttctgcaccatatattaaaatgtacagtgtttacataatattgtgttatatgaaaaaatagttctaaatacaaaaaataaactgtttcaagattacatacatttatatttatcaattttgagattgggccgattttgactactcgtgagcctagccct
gi|6 : acggcttcaatttataacatgttctcacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTCACCTATATCGCAACAA--AAAA--A-GGTG-CAA--ACTCATTAACATCTCGTCCCGT---------TA--TTACCTCGTG-T----AGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACATG---TTATGAAA-CATAAATA-GTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTA--ACTGAAATTG-GTTTTCCAGCACGAATATG-CTCCGAATCGAAAACATCAAAATAAATCTCAAAGAAAACTAACTGAACTTCATTATCACGGCCGTTCTCGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATATATTAAATTGTACAGTGTTTTCGTATTATTGTGTTATTTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA---------ATCAAATTTTGGGATTGGTCTGATTTTGACTACTCGTGAACCTAGTC
gi|7 : --AAAA--A-GGGG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTTGTG-TTGTGAGG--CGC-AT--------A-----------G--TAT-----AA--AGGTAGAGGTTTATAATAAGAACATG---TTATGTAA-CCTAATAA-TTCAA-TTTTAATGGGGGC-GAAAG--AAGGAAATATTGCT--TTTTTTTTT--ACTGAAATTG-GTTTTCCAACATGAATATGTCCTTGAATCGAAAACATC----------TCAACGAAAACTAACTGAACATCAATATCACGGTCGTTCATG---TCATTTTACGTACATCGCCAGAATAATGTGTGTTTGTCCTTCGACACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAGATAGTACTACATAC-AAAAAATGAACTGTTTCAAGATTACACACATATA-A-TT---TATCAATTTTTGAGATTGGGCCGATTCTGAAAACTC
gi|8 : ga--ACTAATTAACATTCCCCCCCACCCCCATCCCTA--TTAAC-CATGGTTACCATG--CTC-AT--------TAACTGTTGCATG--TGT-----GC--ACGTAGACGTCAATGATTATATCACA---TAGTGCAATCA-AAATA-TTCAAATTTTGTTGAAAAA-GAAA---TTGAAAATATTTCTGATTTGGTTTTC-AATAAAATTAAGT---CCAA-ACGAATATGT
gi|9 : TCGTAACAC--AAAA--G-CGTG---G--ACTAATTGACTTGTCGCCCCAC---------AA--TTACCTCGTA-CAGTGATT--CACAATGAGTGTCAT-----------G--TGT-----GC--AAATAGAGGTTAATAA--AGAA---G---TTGT-T-------AATA-CGCAA-TTTCAATGtgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GACACGCCTCTCTAATCCTGTGATGTTTACACAGCATTGTAACGAAAACTCGCAACACAAACTAATTTTGACATATGTATCCGAAATTACC
Unaligned ( gi|16 ): GCCCTTTAGTTCCCAAATGAATGGCTAGTTCAATGTTGATTTATATATCACGAAATATAGCT
Unaligned ( gi|17 ): GGATAATATGACTGTTAATTGATTAATTGTAATAAAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 11 4444444444444444 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 111111111 33333333333333333333 11 11 222222222
lowQualScore : 111 5 88 1 1 4444444444444444 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 0000 999999 333333333 44 0 3 0 44 3 00000000000000000000 44 99999 55 1 666 0 8 3 3 4 55 11 00 4 0 6 0 1 5 0 77 1 5 111111111 0 0
lowQualScore : ... . .. . . ................ . ........................................................................................................................... .. .... ...... ......... .. . . . .. . .................... .. ..... .. . ... . . . . . .. .. .. . . . . . . . .. . . ......... . .
lowQualScore : 000 0 00 0 0 0000000000000000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 0000 555555 333333333 66 8 3 4 66 3 77777777777777777777 66 11111 00 0 444 8 0 6 6 0 55 00 66 4 1 6 4 0 1 4 99 0 7 000000000 4 2
consensus : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-TT---TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
Reference ( family-1933 ) : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-TT---TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
gi|1 : AAAAAAAAAATACAGAATTCAGATTTGTAATATT-TA--TTAAGAATTGTAGATTCTATTTTGTTTATATTAAGATACGAATAATTAGTGTTTTAAC-AAGTGAA-TTGGCGGAAAAGGCTTCAATTTATAACATGTTTTCACCT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCCCCTGTATCGCAACAA--AAAA--ATGGTG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CAC-AT--------T-----------G--TAT-----AA--AGGTAGACGTTCATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTCAATTGGGAC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCTTGAATCGAAAACATCAAAATAAATCTCAAACAAAACTAACTGAACGTCATTATCACGGACGTTCACGTCGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCGTCGACACCATATGTTAAAATGTGAAGTGTTTACATGATATTGTGTTATATG--CAAACGTAGTACAAAATACAAAAAAATAAACTATTTCAAGATAACATACATATA-A-TTGTATATT--TTTTTGAGATTTGGCCGATTTTGACTACTCGTGAACCTAGACCTT
gi|10 : AA--A-CGCG-TAG--ACTAATTGACATATCTCCACAC---------AA--TTACCCTATG-TTGTGATA--TGC-ATGACTCA--T-----------G--TGT-----GA--AGGTAGAGGTAAATAATTAAGAC-TA---TTATGTtactatattgcttatatcagatgaaatatgtgttattaaacatagacggcc
gi|11 : atgttacaaaagttacaatgagcagtgaactatggcacagcctctccaatgttgattagcgcttttatcaacacttatacacCCCGT---------TTGTTTACCTT-TG-TTGTGACATTCAC-AC--------T-----------GACTGTCACATGATCAGGTAGAGTACAATAATTAAATCAC------ATACAATCAC-AATACCTGGA-TTTTACT--GAGCTGAAGGATTT---AATATTGCT--ta
gi|12 : ctat-TTGGA-TTATAATGAGT-C-GGAAG--TTTAAAATATTGCTGTTTTTATTTTTTACTCAAATTG-GTTTT-TAACAGAAATAAGTCTCTGa
gi|14 : atgtaatcttccatcttcctCTGTTTCAGGATCACACA---AT----TT---TATCAATATTTGAGATTGGACAGAATTTGACTACTGGTGAACCTTGCCCTT
gi|15 : --A-GATGACA---ACTAATTGACATCTCTCCCCAC---------GA--TTACCCAACG-TTGTGATG--TAC-AT--------T-----------G--
gi|2 : aaacacacAAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAA-GAATTTG-CGGTTACGGCTTCAATTTATAACATGTTCTCACCT-ac
gi|2 : aCACCTATATCCCAACAG--AAAAA-A-GGTG-CAA--ACTCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAAAGGTTTATAAT---AAAACGTTTTTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GATAG--TTGGAAATATTGCT--TTTTATTTG--AATGAAATTG-GTTTTCCACCACTAATATGTCCCCGAATCAAAAACATCAAAATAAATCTCAACAAAAACGTACTGAACGTCATTATCACGGTCGTTCACGACATCATTTTACGTACGTCGCCAAAATAACGTGTGTATGTCCTTCGACACCATATATTAAAATGTACATTGTTTACATAATATTGTGTTATAGGAAAAAAAATAGTACTAAATAC-AAAAAATAAGCTGTTTCAAG----C-------------------TCAATTTTTGAGACTGGGCCGATTTTGACTACTCGTGAACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctatatcccaacagaaaaaaggtgcaaactcattaacatctcgccccgttattaccttgtgttgcgaggcgcattgtgtaaaggtaaaggtttataataaaacgtttttatgtaacataaatattcgattttaatgggggcgatagttggaaatattgctttttatttgaatgaaattggttttccaccactaatatgtccccgaatcaaaaacatcaaaataaatctcaacaaaaacgtactgaacgtcattatcacggtcgttcacgacatcattttacgtacgtcgccaaaataacgtgtgtatgtccttcgacaccatatattaaaatgtacattgtttacataatattgtgttataggaaaaaaaatagtactaaatacaaaaaataagctgtttcaagctcaatttttgagactgggccgattttgactactcgtgaacc
gi|3 : aaaaaaagaaatacaggattcagatttatattctaacttaagaattgtagattctattttgttaatatttagatgcgaataattagtgttttaacaaaagaatttgcggttacggcttcaatttataacatgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGCTTCAATTTATAACACGTTCTCACCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCACCTATATCGCAACAG--AAAATTA-G-TG-CAG--ACTAACTAACATCTCGTCCCGT---------AA--TTACTTCGTA-TTGCGAGG--CAT-AT--------T-----------G--TGT-----AA--AGACAGAGGTTCATAATTAGAACAAG---TTATGTAA-CCTAAATA-TTCGA-TTCTAATGGGGGC-AAA----TTGGAAAAATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAGCGTCATTATCCCGGTCGTTCACGACGTCATTTTACATACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTAACATAA---TGTATTATGTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-ATTT---TATTAATTTTTGAGATAGTGCCGATTTTGACTACTCGTGAAC
gi|4 : GATACGAATAATTAGTGTTTT--------------G-CGGTTACGGCTTTAATTTATAACACGTTCTCACCT-
gi|4 : GTTGTCACCTATATCGCAACAGGAAAAA--A-GATG-C------TCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGA--CGA-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACACG---TTATGAAA-CATAAATA-TTCGA-TTTTAATTGGGGC-GAAAG--CTAGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAA-AAAAACTAACTGAACATCATTATCAAGGCCGTTCTCACCGTCATTTTACGTACGAAGCAAAAATAACGCGTGTTTGTCCTTCGCCACCATGTATTAAAATGTACAGTGTTTACATGATATTGTGTTATATG--AAAAAATA------------------------GTTTCAAGATTACACACATATA-ATTT---TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttgtcacctatatcgcaacaggaaaaaagatgctcattaacatctcgccccgttattaccttgtgttgcgagacgaattgtgtgaaggtagaggtttataattagaacacgttatgaaacataaatattcgattttaattggggcgaaagctagaaatattgctttttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcaaaataaatctcaaaaaaactaactgaacatcattatcaaggccgttctcaccgtcattttacgtacgaagcaaaaataacgcgtgtttgtccttcgccaccatgtattaaaatgtacagtgtttacatgatattgtgttatatgaaaaaatagtttcaagattacacacatataattttatcaatttttgagattgggccgattttgactactcgtgaacctt
gi|5 : gatacgaataattagtgttttgcggttacggctttaatttataacacgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGGCTTCAATTTATAACATGTTCTCACt
gi|5 : GTTCTCACCTTTATCACAACAG--AAAA--AAGGTG-C-GTCACTCATTAATATTTCGCCCTGT---------TA--TTACCTAGCG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAGAGGTTCATAATTAGAACACG---TTATGAAA-CATAAATA-TTCCA-TTTTAATGGGGGC-GAAAG--CTGGAAATATTGCA--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCGAAATAAATCTTAATGAAAACTAACTGAACAT----------GACGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCTGCACCATATATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAAATAGTTCTAAATAC-AAAAAATAAACTGTTTCAAGATTACATACATTTATA-TT---TATCAA-TTTTGAGATTGGGCCGATTTTGACTACTCGTGAGCCTAGCCCTatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttctcacctttatcacaacagaaaaaaggtgcgtcactcattaatatttcgccctgttattacctagcgttgcgaggcgcattgtgtaaaggtagaggttcataattagaacacgttatgaaacataaatattccattttaatgggggcgaaagctggaaatattgcattttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcgaaataaatcttaatgaaaactaactgaacatgacgttcacgacgtcattttacgtacgtcgccaaaataacgtgtgtttgtccttctgcaccatatattaaaatgtacagtgtttacataatattgtgttatatgaaaaaatagttctaaatacaaaaaataaactgtttcaagattacatacatttatatttatcaattttgagattgggccgattttgactactcgtgagcctagccct
gi|6 : acggcttcaatttataacatgttctcacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTCACCTATATCGCAACAA--AAAA--A-GGTG-CAA--ACTCATTAACATCTCGTCCCGT---------TA--TTACCTCGTG-T----AGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACATG---TTATGAAA-CATAAATA-GTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTA--ACTGAAATTG-GTTTTCCAGCACGAATATG-CTCCGAATCGAAAACATCAAAATAAATCTCAAAGAAAACTAACTGAACTTCATTATCACGGCCGTTCTCGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATATATTAAATTGTACAGTGTTTTCGTATTATTGTGTTATTTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA---------ATCAAATTTTGGGATTGGTCTGATTTTGACTACTCGTGAACCTAGTC
gi|7 : --AAAA--A-GGGG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTTGTG-TTGTGAGG--CGC-AT--------A-----------G--TAT-----AA--AGGTAGAGGTTTATAATAAGAACATG---TTATGTAA-CCTAATAA-TTCAA-TTTTAATGGGGGC-GAAAG--AAGGAAATATTGCT--TTTTTTTTT--ACTGAAATTG-GTTTTCCAACATGAATATGTCCTTGAATCGAAAACATC----------TCAACGAAAACTAACTGAACATCAATATCACGGTCGTTCATG---TCATTTTACGTACATCGCCAGAATAATGTGTGTTTGTCCTTCGACACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAGATAGTACTACATAC-AAAAAATGAACTGTTTCAAGATTACACACATATA-A-TT---TATCAATTTTTGAGATTGGGCCGATTCTGAAAACTC
gi|8 : ga--ACTAATTAACATTCCCCCCCACCCCCATCCCTA--TTAAC-CATGGTTACCATG--CTC-AT--------TAACTGTTGCATG--TGT-----GC--ACGTAGACGTCAATGATTATATCACA---TAGTGCAATCA-AAATA-TTCAAATTTTGTTGAAAAA-GAAA---TTGAAAATATTTCTGATTTGGTTTTC-AATAAAATTAAGT---CCAA-ACGAATATGT
gi|9 : TCGTAACAC--AAAA--G-CGTG---G--ACTAATTGACTTGTCGCCCCAC---------AA--TTACCTCGTA-CAGTGATT--CACAATGAGTGTCAT-----------G--TGT-----GC--AAATAGAGGTTAATAA--AGAA---G---TTGT-T-------AATA-CGCAA-TTTCAATGtgttga
blockSeqs : . C AC A T AACAAAAGAATTTG T NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN GA TTA CGTC CCCCATCCC GT G TT A TAACTGTTGCAT AC CACAT TC A TTT T C A T AT GT TT A C T A AA A . AATTT
blockSeqs : G . . AA TAG . . . . . GAGTGTCAT . . . A . T . . . . GA C . C T A . C . AATTT
blockSeqs : . . AA ACA . . . . . GACTCAT . . . T . . . . . . . . . T C C . A . ATATT
blockSeqs : . A CAA . . . . . T . . . C . . . . . . . . . A A A . A . AATT
blockSeqs : . A CAG . . . . . T . . . T . . . . . . . . . C C A . C . TT
blockSeqs : . A CAA . . . . . T . . . C . . . . . . . . . . T . . G . A
blockSeqs : . A CAG . . . . . T . . . T . . . . . . . . . .
blockSeqs : A C . . . . . T . . . T . . . . . . . . .
blockSeqs : G G . . . . . T . . . A . . . . . . .
blockSeqs : . . . . . T . . . A . . .
blockSeqs : . . . . . A .
blockSeqCons : A*** ATT******
originalCons : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATA-A-TT---TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
finalCons : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAAA---GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACATATATT------TATCAATTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GACACGCCTCTCTAATCCTGTGATGTTTACACAGCATTGTAACGAAAACTCGCAACACAAACTAATTTTGACATATGTATCCGAAATTACC
Unaligned ( gi|16 ): GCCCTTTAGTTCCCAAATGAATGGCTAGTTCAATGTTGATTTATATATCACGAAATATAGCT
Unaligned ( gi|17 ): GGATAATATGACTGTTAATTGATTAATTGTAATAAAATGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 1 11 4444444444444444 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111 111111111 33333333333333333333 11 11 22222
lowQualScore : 111 5 88 1 1 4444444444444444 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 66 0000 999999 333333333 44 0 3 0 44 3 00000000000000000000 44 99999 55 1 666 0 8 3 3 4 55 11 00 4 6 0 1 5 0 77 1 5 66 22222 777 0
lowQualScore : ... . .. . . ................ . ........................................................................................................................... .. .... ...... ......... .. . . . .. . .................... .. ..... .. . ... . . . . . .. .. .. . . . . . . .. . . .. ..... ... .
lowQualScore : 000 0 00 0 0 0000000000000000 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 0000 555555 333333333 66 8 3 4 66 3 77777777777777777777 66 11111 00 0 444 8 0 6 6 0 55 00 66 4 6 4 0 4 4 99 0 7 99 22222 222 2
consensus : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACA--TAT-A--TTTATCAA--TTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
Reference ( family-1933 ) : AAAAAAGAAATACAGGATTCAGATTTGTAATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTNATATTNAGATACGAATAATTAGTGTTTTAAC-AAG-GAA-TTG-CGGTTACGGCTTCAATTTATAACACGTTCTCACCT-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCACCTATATCGCAACAG--AAAA--A-GGTG-CAG--ACTAATTAACATCTCGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTNATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAACGTCATTATCACGGNCGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAANATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACA--TAT-A--TTTATCAA--TTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTAGCCCTT
gi|1 : AAAAAAAAAATACAGAATTCAGATTTGTAATATT-TA--TTAAGAATTGTAGATTCTATTTTGTTTATATTAAGATACGAATAATTAGTGTTTTAAC-AAGTGAA-TTGGCGGAAAAGGCTTCAATTTATAACATGTTTTCACCT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCCCCTGTATCGCAACAA--AAAA--ATGGTG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTCGTG-TTGCGAGG--CAC-AT--------T-----------G--TAT-----AA--AGGTAGACGTTCATAATTAGAACACG---TTATGTAA-CATAAATA-TTCGA-TTTCAATTGGGAC-GAAAG--TTGGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCTTGAATCGAAAACATCAAAATAAATCTCAAACAAAACTAACTGAACGTCATTATCACGGACGTTCACGTCGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCGTCGACACCATATGTTAAAATGTGAAGTGTTTACATGATATTGTGTTATATG--CAAACGTAGTACAAAATACAAAAAAATAAACTATTTCAAGATAACATACA--TAT-A--ATTGTATATTTTTTTGAGATTTGGCCGATTTTGACTACTCGTGAACCTAGACCTT
gi|10 : AA--A-CGCG-TAG--ACTAATTGACATATCTCCACAC---------AA--TTACCCTATG-TTGTGATA--TGC-ATGACTCA--T-----------G--TGT-----GA--AGGTAGAGGTAAATAATTAAGAC-TA---TTATGTtactatattgcttatatcagatgaaatatgtgttattaaacatagacggcc
gi|11 : atgttacaaaagttacaatgagcagtgaactatggcacagcctctccaatgttgattagcgcttttatcaacacttatacacCCCGT---------TTGTTTACCTT-TG-TTGTGACATTCAC-AC--------T-----------GACTGTCACATGATCAGGTAGAGTACAATAATTAAATCAC------ATACAATCAC-AATACCTGGA-TTTTACT--GAGCTGAAGGATTT---AATATTGCT--ta
gi|12 : ctat-TTGGA-TTATAATGAGT-C-GGAAG--TTTAAAATATTGCTGTTTTTATTTTTTACTCAAATTG-GTTTT-TAACAGAAATAAGTCTCTGa
gi|14 : atgtaatcttccatcttcctCTGTTTCAGGATCACACA-----AT----TTTATCAA--TATTTGAGATTGGACAGAATTTGACTACTGGTGAACCTTGCCCTT
gi|15 : --A-GATGACA---ACTAATTGACATCTCTCCCCAC---------GA--TTACCCAACG-TTGTGATG--TAC-AT--------T-----------G--
gi|2 : aaacacacAAAAAAGAAATACAGGATTCAGATTT---ATATTCTAACTTAAGAATTGTAGATTCTATTTTGTTAATATTTAGATGCGAATAATTAGTGTTTTAACAAAA-GAATTTG-CGGTTACGGCTTCAATTTATAACATGTTCTCACCT-ac
gi|2 : aCACCTATATCCCAACAG--AAAAA-A-GGTG-CAA--ACTCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAAAGGTTTATAAT---AAAACGTTTTTATGTAA-CATAAATA-TTCGA-TTTTAATGGGGGC-GATAG--TTGGAAATATTGCT--TTTTATTTG--AATGAAATTG-GTTTTCCACCACTAATATGTCCCCGAATCAAAAACATCAAAATAAATCTCAACAAAAACGTACTGAACGTCATTATCACGGTCGTTCACGACATCATTTTACGTACGTCGCCAAAATAACGTGTGTATGTCCTTCGACACCATATATTAAAATGTACATTGTTTACATAATATTGTGTTATAGGAAAAAAAATAGTACTAAATAC-AAAAAATAAGCTGTTTCAAG----C------------------TCAA--TTTTTGAGACTGGGCCGATTTTGACTACTCGTGAACCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacctatatcccaacagaaaaaaggtgcaaactcattaacatctcgccccgttattaccttgtgttgcgaggcgcattgtgtaaaggtaaaggtttataataaaacgtttttatgtaacataaatattcgattttaatgggggcgatagttggaaatattgctttttatttgaatgaaattggttttccaccactaatatgtccccgaatcaaaaacatcaaaataaatctcaacaaaaacgtactgaacgtcattatcacggtcgttcacgacatcattttacgtacgtcgccaaaataacgtgtgtatgtccttcgacaccatatattaaaatgtacattgtttacataatattgtgttataggaaaaaaaatagtactaaatacaaaaaataagctgtttcaagctcaatttttgagactgggccgattttgactactcgtgaacc
gi|3 : aaaaaaagaaatacaggattcagatttatattctaacttaagaattgtagattctattttgttaatatttagatgcgaataattagtgttttaacaaaagaatttgcggttacggcttcaatttataacatgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGCTTCAATTTATAACACGTTCTCACCTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCACCTATATCGCAACAG--AAAATTA-G-TG-CAG--ACTAACTAACATCTCGTCCCGT---------AA--TTACTTCGTA-TTGCGAGG--CAT-AT--------T-----------G--TGT-----AA--AGACAGAGGTTCATAATTAGAACAAG---TTATGTAA-CCTAAATA-TTCGA-TTCTAATGGGGGC-AAA----TTGGAAAAATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAACGAAAACTAACTGAGCGTCATTATCCCGGTCGTTCACGACGTCATTTTACATACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATGTATTAAAATGTACAGTGTTAACATAA---TGTATTATGTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACA--TAT-AATTTTATTAA--TTTTTGAGATAGTGCCGATTTTGACTACTCGTGAAC
gi|4 : GATACGAATAATTAGTGTTTT--------------G-CGGTTACGGCTTTAATTTATAACACGTTCTCACCT-
gi|4 : GTTGTCACCTATATCGCAACAGGAAAAA--A-GATG-C------TCATTAACATCTCGCCCCGT---------TA--TTACCTTGTG-TTGCGAGA--CGA-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACACG---TTATGAAA-CATAAATA-TTCGA-TTTTAATTGGGGC-GAAAG--CTAGAAATATTGCT--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCAAAATAAATCTCAA-AAAAACTAACTGAACATCATTATCAAGGCCGTTCTCACCGTCATTTTACGTACGAAGCAAAAATAACGCGTGTTTGTCCTTCGCCACCATGTATTAAAATGTACAGTGTTTACATGATATTGTGTTATATG--AAAAAATA------------------------GTTTCAAGATTACACACA--TAT-AATTTTATCAA--TTTTTGAGATTGGGCCGATTTTGACTACTCGTGAACCTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttgtcacctatatcgcaacaggaaaaaagatgctcattaacatctcgccccgttattaccttgtgttgcgagacgaattgtgtgaaggtagaggtttataattagaacacgttatgaaacataaatattcgattttaattggggcgaaagctagaaatattgctttttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcaaaataaatctcaaaaaaactaactgaacatcattatcaaggccgttctcaccgtcattttacgtacgaagcaaaaataacgcgtgtttgtccttcgccaccatgtattaaaatgtacagtgtttacatgatattgtgttatatgaaaaaatagtttcaagattacacacatataattttatcaatttttgagattgggccgattttgactactcgtgaacctt
gi|5 : gatacgaataattagtgttttgcggttacggctttaatttataacacgttctcacctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnACGGCTTCAATTTATAACATGTTCTCACt
gi|5 : GTTCTCACCTTTATCACAACAG--AAAA--AAGGTG-C-GTCACTCATTAATATTTCGCCCTGT---------TA--TTACCTAGCG-TTGCGAGG--CGC-AT--------T-----------G--TGT-----AA--AGGTAGAGGTTCATAATTAGAACACG---TTATGAAA-CATAAATA-TTCCA-TTTTAATGGGGGC-GAAAG--CTGGAAATATTGCA--TTTTATTTT--ACTGAAATTG-GTTTTCCAACACGAATATGTCCCCGAATCGAAAACATCGAAATAAATCTTAATGAAAACTAACTGAACAT----------GACGTTCACGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCTGCACCATATATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAAATAGTTCTAAATAC-AAAAAATAAACTGTTTCAAGATTACATACATTTAT-A--TTTATCAA---TTTTGAGATTGGGCCGATTTTGACTACTCGTGAGCCTAGCCCTatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngttctcacctttatcacaacagaaaaaaggtgcgtcactcattaatatttcgccctgttattacctagcgttgcgaggcgcattgtgtaaaggtagaggttcataattagaacacgttatgaaacataaatattccattttaatgggggcgaaagctggaaatattgcattttattttactgaaattggttttccaacacgaatatgtccccgaatcgaaaacatcgaaataaatcttaatgaaaactaactgaacatgacgttcacgacgtcattttacgtacgtcgccaaaataacgtgtgtttgtccttctgcaccatatattaaaatgtacagtgtttacataatattgtgttatatgaaaaaatagttctaaatacaaaaaataaactgtttcaagattacatacatttatatttatcaattttgagattgggccgattttgactactcgtgagcctagccct
gi|6 : acggcttcaatttataacatgttctcacatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTTCTCACCTATATCGCAACAA--AAAA--A-GGTG-CAA--ACTCATTAACATCTCGTCCCGT---------TA--TTACCTCGTG-T----AGG--CGC-AT--------T-----------G--TGT-----GA--AGGTAGAGGTTTATAATTAGAACATG---TTATGAAA-CATAAATA-GTCGA-TTTTAATGGGGGC-GAAAG--TTGGAAATATTGCT--TTTTATTTA--ACTGAAATTG-GTTTTCCAGCACGAATATG-CTCCGAATCGAAAACATCAAAATAAATCTCAAAGAAAACTAACTGAACTTCATTATCACGGCCGTTCTCGACGTCATTTTACGTACGTCGCCAAAATAACGTGTGTTTGTCCTTCGGCACCATATATTAAATTGTACAGTGTTTTCGTATTATTGTGTTATTTG--AAAACATAGTACTAAATAC-AAAAAATAAACTGTTTCAAGATTACACACA--TAT-A-----ATCAA--ATTTTGGGATTGGTCTGATTTTGACTACTCGTGAACCTAGTC
gi|7 : --AAAA--A-GGGG-CAG--ACTAATTAACATCTTGCCCCGT---------TA--TTACCTTGTG-TTGTGAGG--CGC-AT--------A-----------G--TAT-----AA--AGGTAGAGGTTTATAATAAGAACATG---TTATGTAA-CCTAATAA-TTCAA-TTTTAATGGGGGC-GAAAG--AAGGAAATATTGCT--TTTTTTTTT--ACTGAAATTG-GTTTTCCAACATGAATATGTCCTTGAATCGAAAAC----------ATCTCAACGAAAACTAACTGAACATCAATATCACGGTCGTTC---ATGTCATTTTACGTACATCGCCAGAATAATGTGTGTTTGTCCTTCGACACCATGTATTAAAATGTACAGTGTTTACATAATATTGTGTTATATG--AAAAGATAGTACTACATAC-AAAAAATGAACTGTTTCAAGATTACACACA--TATAA--TTTATCAA--TTTTTGAGATTGGGCCGATTCTGAAAACTC
gi|8 : ga--ACTAATTAACATTCCCCCCCACCCCCATCCCTA--TTAAC-CATGGTTACCATG--CTC-AT--------TAACTGTTGCATG--TGT-----GC--ACGTAGACGTCAATGATTATATCACA---TAGTGCAATCA-AAATA-TTCAAATTTTGTTGAAAAA-GAAA---TTGAAAATATTTCTGATTTGGTTTTC-AATAAAATTAAGT---CCAA-ACGAATATGT
gi|9 : TCGTAACAC--AAAA--G-CGTG---G--ACTAATTGACTTGTCGCCCCAC---------AA--TTACCTCGTA-CAGTGATT--CACAATGAGTGTCAT-----------G--TGT-----GC--AAATAGAGGTTAATAA--AGAA---G---TTGT-T-------AATA-CGCAA-TTTCAATGtgttga
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): GACACGCCTCTCTAATCCTGTGATGTTTACACAGCATTGTAACGAAAACTCGCAACACAAACTAATTTTGACATATGTATCCGAAATTACC
Unaligned ( gi|16 ): GCCCTTTAGTTCCCAAATGAATGGCTAGTTCAATGTTGATTTATATATCACGAAATATAGCT
Unaligned ( gi|17 ): GGATAATATGACTGTTAATTGATTAATTGTAATAAAATGT