lowQualScore : 1111111111111111111111111111111111111
lowQualScore : 444444444444 11 1 33 111111 2222222 2222222222222222222222222222222222222 1 1111111111 1 2222222222 6666 1 1 11111 222 11111 333333333333 55555555555555555555555555555555555555 2222 33333333333333333333333333 1
lowQualScore : 6 3 0 111111111111 66 3 0 00 777 6 999999 5555555 2 1 33 6 6666666666666666666666666666666666666 3 4 0 5 3 77 6666666666 3 2222222222 1 8888 5 3 7 33333 99 3 777 5 77 5 33333 777777777777 22222222222222222222222222222222222222 1111 99999999999999999999999999 7 99 5 1
lowQualScore : . . . ............ .. . . .. ... . ...... ....... . . .. . ..................................... . . . . . .. .......... . .......... . .... . . . ..... .. . ... . .. . ..... ............ ...................................... .... .......................... . .. . .
lowQualScore : 0 0 8 444444444444 66 6 6 00 222 0 222222 8888888 5 0 55 7 6666666666666666666666666666666666666 7 3 1 0 0 77 4444444444 7 1111111111 0 7777 0 3 0 33333 22 3 111 7 99 7 55555 222222222222 00000000000000000000000000000000000000 0000 55555555555555555555555555 3 22 0 4
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATAAACTGCCTGCCTGATAAACAT-CGNTTTATCACGTCAATGCAAGTTTATCAGGCACATGACGTCAT------TATGTA---TTCNTGACGTCATTTACA-TAT-TACTGCGTGGCTTAATGGA-ATCATCTCCA-ATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTT-NAAT--TTCA--AANAAANGACGNACTAGAAATATTGA----CATGATAAANAGAATAC---CATGTT--ANTGTCTA--A-T--A-TTATCAANTNT-ATCAGGTTCGGC---AC--GAAAAATTCAAGNNCTCGNCAG-AGCCT-CGCTNNGCCGTTTT-TCTA-GTTTCAACTGATGAA-TTT--G----A-------TNA----TATCAGACACTAACATGGTAT--TCTCTATAT
Reference ( gi|1 ) : TCATCATGTCAATGTATTCATTTCTGTTGATGAGCTGTCTGCATGATAAACAT-TGTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCAT------TATGTA---TTTGTGATGTCATTTACA-TAT-TATTGTGCGGCTAAATGGAGATCATCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTT-AAGT--CTCA--AACAAAGGACACACTGGAAATATTGACAGTCATGATCAATAGTATAC---CGTGTT--ATTGTCT---A-T--A-TTATCAACTGT-ATCAGGTCTGAC---AT--GAAAAATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTATTAT-TCTAAGCCTCAACTGATAAA-TCT--G----A-------TTA----TATCAGACACTAACATGGTAT--TCTGTATAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT------------TGATATA----TGTTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCAT------TATGTA---T----------AATTATA-CAT-T-----GTGG-----TGGA----ATCTCTA------CAGGATGTAACAA-AAGTTTGATGCTGATTTT-CAAT--TTTATTAAAAAAAGACAATTTAGAAATATTGA----CATGATAAAGAGAATGC---CATGTT--AGTGTCTA--A-T--A-TTATCAACTTC-ATCAGGTTCGGC---ACGGGAAAAA--CAAGAACTCGACAG-AGCCT-CG
gi|8 : tttTTATCATGTCAATGCATTCATTTCTGTTGATGAACTGTCTGCCTGATAAACAT-CATTTTATCACATCAACACAAGTTTATCACGCACATGACATCAT------TATGTA---TTTATGATGTCACTTACA-TA
gi|3 : TTATCATGTCAATGTATTCATTTCTGT-------CTGTC-G---GATAAACATATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCAT------TATATA---TTCTTCATGACGT------TGT-TA-TGTAT-ACTAAATA-----CATTTT--GACCT--GGACAG-AACTA-CA-TTTAAC-CTTACTTA-AAATGACT-A--AA-AAATGA---ACTAGAAATATTAA----CATGATAAAAAGAATAC---CATGTA--AATGTCTA--A-T--A-TTATCAAATTT-ATCAGATGAGAC---TTA-GAAAAA
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAACCGCCTACCTGATAAACA--TGGTTTATCACGTCAATGCAAGTT
gi|4 : aattATCATGTCAATGCATTCATTTCTGTTGATAATATGCCTACTCGATAAACAC-AGGTTTATCACGTCGTTGCATGTTTATCAGGCACATGACGTCAT------TATGTATACTTCATGACGTC--TTATG-TAT-aattatacattttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|10 : tAGTTCATCAGGCATGTGACATCATTTACAGTATGTA---TGTTTGACGacttatacattttgatctggacggaaccttagttacaatgaccaagaaacgaactagaaatattgacatgatagatagaacactaacattgtatcttctatatattgg
gi|10 : tTCAT------CAGGCA---T--GTGACATCATTTACAGTATGTAT------GTTTGACGGA-ATCA---------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTC-CAAT--CTCA--gaatcactacaggatgtaacacaagtttgatgctgatttccaatctcat
gi|11 : tagtATTAACA-TAT-AACTGCACGGCTTAATGGCGATTATCTCCA------CAGGCTGTAACAA-ATGTTCGATGCCAATTTT-t
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTAT-CAAT--TTCAT-AAAAAAccatttca
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTT-TAAT--TTTA--
gi|12 : gaattACAGGATGCAACAA-AAGATGGATTCTGGTTTC-AA-T--TTCA--TAGAAGCGACGAATTAGAAATAT
gi|5 : ggaatcaaaAA-AAGCTTGAATCTGATTTTCAATT--TTTA--AAAAAAAGACTGATTAAAAATATGGA----CATAATAAAGATAATAC---AATGTT--AGTGTCTG--A-T--A-TTATTAATTTC-ATCAGGT
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-AAAT-----A--AACAAAG--CGCGC---AAATAATGACA-TGATGATAAATAGAATA-----GTGTTGGATAGTTTAAAA-TAAA-TAATCA---GT-TTCGGGTTCGAA---A----AAAAATT---ATTTT----AGTATTTT-TTCTCTACCACAAC-TCTCTACTTCAACTGAAAAAGTTT--AAACTA-------TTA----T-TTAGGCACTAACATGGTTT--TCTCTA
gi|7 : aaatcagttgttgcgt--AATAAA--ACACGCCAATAATATT-------ATGATAAATAAAATAC---CATGTC--ATTTCCT---A-T--AAGTCTAAAATGT-TTTCGGCTTGGCTCGAT--AAAACATT-AAGCATTCGCCAA-TGCTTATGCTAAGTTGTTTTCTCTA--TTTCAAATGATGCA-TTT--G----AGATAAATTTGAGACTATCAGACACTAACCTGTTAT--TCTCTA
gi|4 : ACTAGAAATATTGA----CATGATAGATAGAACACTAACATTGT--ATCTTCT---A-T--A-T
gi|13 : tatcatgtcaatgcattcatttctgttgataatatgcctactcgataaacacaggtttatcacgtcgttgcatgtttatcaggcacatgacgtcattatgtatacttcatgacgtcttatgtatacttatacattttgatctggacggaaccttagttacaatgaccaagaaacgaTATCT---AAT--A-TTATCAAC-GTCATCAGGTTCGGT---AC--GAAAAAATCAAAATCACGGCAG-AGCCattgg
gi|3 : gtaaaTTTT-TCTAAGTCTCATCTGATAAA-TTT--G----A-------TAA----TATTAGACATTTACATGGTAT--TCTTTTTATgcat
gi|2 : ttatcatgtcaatgtattcatttctgtctgtcggataaacatatgcttatcacgtcattgcaagtttatcaggcacatggcgtcattatatattcttcatgacgttgttatgtatactaaatacattttgacctggacagaactacatttaaccttacttaaaatgactaaaaaatgaactagaaatattaacatgCTGATGAA-GTT--G----A-------TAA----TATTAGACACTAACATGGCAT--TCTCTTTAT
gi|5 : tttttattatgtcaatgcatttatttatgttgattgatatatgtttatcacgtcaatgtaagtttataaggcacattgcgtcattatgtataattatacattgtggtggaatctctacaggatgtaacaaaagtttgatgctgattttcaattttattaaaaaaagacaatttagaaatattgacatgCTGATGAA-ATT--A----A-------TAA----TATCAGACACTAACATTGTATTATCTTTAgttcggcacgggaaaaacaagaactcgacagagcctcg
gi|9 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataCTGATAAA-TTTTAG----A-------CTA----T--CAGACACAAATATGATAT--TCTgt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATGAATTTGAGACTATCGGACACTAACAAAGATTCTCTGTAT
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 1111111 111 2222222 1111111111111111111111111111111111 1111 111 111111 222 11 11 1 2222 55555555555555
lowQualScore : 9999999 1 999 2 8888888 00 5 5 0000000000000000000000000000000000 4 4 2 1 2 3 77 1 55 77 2222 000 1 888 66 1 4 1 1 33 000000 6 777 333 1 8 22 22 555 33 0 6666 8 22222222222222 0 0
lowQualScore : ....... . ... . ....... .. . . .................................. . . . . . . .. . .. .. .... ... . ... .. . . . . .. ...... . ... ... . . .. .. ... .. . .... . .............. . .
lowQualScore : 0000000 0 777 5 7777777 44 7 7 1111111111111111111111111111111111 6 0 8 0 5 6 99 0 22 99 1111 000 0 888 11 0 4 4 0 88 555555 7 444 444 0 0 00 00 000 88 0 0000 0 66666666666666 8 8
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGA-CTGCCTGCCTGATAAACAT-GGTTTATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TATTA--GCGCGGCTTAATGG-A-ATCAT-TCTA-ATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAANGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANTTCATCAGGTTCGG-CNC--GA-AAAA--TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCT-A-GCCTCAACTGATAAA-TTTGA--TA----TNA---TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATAAACTGCCTGCCTGATAAACATCGNTTTATCACGTCAATGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCNTGACGTCATT-TACA-TATTACTGCGTGGCTTAATGG-A-ATCATCTCCA-ATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTNAATTTC-A--AANAAANGACGNACTAGAAATATTGA----CATGAT---AAANAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANTNTATCAGGTTCGG-CAC--GA-AAAAT-TCAAGNNCTCGNCAG-AGCCT-CGCTNNGCCGT--TTT-TCT-A-GTTTCAACTGATGAA-TTTGA--------TNA---TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGCTGTCTGCATGATAAACATTGTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TATTATTGTGCGGCTAAATGG-AGATCATCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAAGGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACTGTATCAGGTCTGA-CAT--GA-AAAAT-TCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAA-GCCTCAACTGATAAA-TCTGA--------TTA---TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTAT----GTATG-TTTGACGG-A-ATCA---------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TATAACTGCACGGCTTAATGGCG-ATTATCTCCA------CAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : GG-A-ATCA-----A-A---ACAGGATGCAACAA-AAGATGGATTCTGG-TTTCAATTTC-A--TAGAAGCGACGAATTAGAAATAT
gi|13 : GTA--AATATCTA-ATATTATCAACGTCATCAGGTTCGG-TAC--GA-AAAAA-TCAAAATCACGGCAG-AGCC
gi|14 : -ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-AT-AAAAAAgcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGA--------GAC---TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT------------TGATA--TAT--GTTTATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CATT-----GTGG-----TGG-A-ATC---------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAAAGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACTTCATCAGGTTCGG-CACGGGA-AAAA---CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT-----------CTGTCGGATAAACATATGCTTATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TACTA-----------AATA------CAT-TTTG-ACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAATGAC-T--AAAAAATGA---ACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAATTTATCAGAT
gi|3 : T--TTT-TCT-AAGTCTCATCTGATAAA-TTTGA--------TAA---TATTAGACATTTACATGGTATTCTTTTTATgagacttagaaaaa
gi|4 : ttatcatgtcaatgtattcatttctgtctgtcggataaacatatgcttatcacgtcattgcaagtttatcaggcacatggcgtcattatatattcttcatgacgttgttatgtatactaaatacattttgacctggacagaactacatttaaccttacttaaaatgactaaaaaatgaactagaaatattaacatgTATCATGTCAATGCATTCATTTCTGTTGATAATATGCCTACTCGATAAACACAGGTTTATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT---------ACTT-ATA------CAT-TTTG-ATCT---GGACGGAAC-------------CTTAGTTACAATGAC-C--AAGAA---ACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAACCGCCTACCTGATAAACAT-GGTTTATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAAAGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATTTCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTGTTGC-GTTTTTAAAT----A--AACAAAG--CGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAATA-ATCAGTTTCGGGTTC--GA-AAAA----AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCT-A--CTTCAACTGAAAAAGTTTAAACTA----TTA---T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcag--AATAAAACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTCGGCTTGG-CTC--GATAAAACATTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCT-A--TTTCAAATGATGCA-TTTGAGATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGTCTGCCTGATAAACATCATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAATTTATCAGGTTCGT-TTC--TA-AAAA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 33333333 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 222 1 55555555555555555
lowQualScore : 88888888 1 5555 3 0 2 7777777 00 5 5 99999999999999999999999999999999999 1 4 4 2 0 3 77 1 33 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 77 5 66 333 1 8 0 1 333333 777 0 0 99999999999999999 3 3
lowQualScore : ........ . .... . . . ....... .. . . ................................... . . . . . . .. . .. .. . .... ... . ... .. . . . . ... . . .. . .. . .. ... . . . . ...... ... . . ................. . .
lowQualScore : 00000000 0 3333 3 7 5 5555555 44 7 7 77777777777777777777777777777777777 9 0 1 6 4 6 99 0 00 99 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 99 7 33 888 0 0 0 0 333333 777 7 0 55555555555555555 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCAT-T-TG-ATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAAAGA--CGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCT-A-CTTCAACTGATGAA-TTTGA--GATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGA-C-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA--GCGCGGCTTAATGG-A-ATCAT-TCTA-ATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAANGA--CGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCT-AGCCTCAACTGATAAA-TTTGA--TATNA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGC-TGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCATCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAAGGA--CACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A--AAA-ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCTG----ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA--T----GTTTGACGG-A-ATCA---------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTAT-C-----TCCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : GG-A-ATCA-----A-A---ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAGCGA--CGAATTAGAAATAT
gi|13 : GTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA--AAA-A-TCAAAATCACGGCAG-AGCC
gi|14 : -ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-AT-AAAAAAgcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGA--GAC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT-------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC---------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAAAGA--CAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A--AAA-A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT------------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CAT-TTTG-ACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAAAAA--TGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A--AAA-A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAA-TATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CAT-TTTG-ATCT---GGACGGAAC-------------CTTAGTTACAATGAC-C--AAGAA---A--CGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAAC-CGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAAAGA--CTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A--AAA-A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCT-A-CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAAACA--CG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCT-A-TTTCAAATGATGCA-TTTGA--GATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A--AAA-A-
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1111111 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 11 1 11 44444444444
lowQualScore : 8888888 1 5555 3 0 2 7777777 00 5 5 77777777777777777777777777777777777 1 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 77 5 66 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ....... . .... . . . ....... .. . . ................................... . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . .. . .. ... . . . . ...... .. . . .. ........... . .
lowQualScore : 7777777 0 3333 3 7 5 5555555 44 7 7 11111111111111111111111111111111111 9 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 99 7 33 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGA-CTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TTT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGCTGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCA-TCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A--AAA-ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA----T--GTTTGACGG-A-ATCA----------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTA-TCT------CCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA--AAA-A-TCAAAATCACGGCAG-AGCC
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC----------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A--AAA-A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT-----------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CATTTT---GACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A--AAA-A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAATATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CATTTT---GATCT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAACCGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A--AAA-A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A--AAA-A-
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 33333333 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 11 1 11 44444444444
lowQualScore : 88888888 1 5555 3 0 2 7777777 00 5 5 66666666666666666666666666666666666 1 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 5 77 66 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ........ . .... . . . ....... .. . . ................................... . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . . .. .. ... . . . . ...... .. . . .. ........... . .
lowQualScore : 00000000 0 3333 3 7 5 5555555 44 7 7 88888888888888888888888888888888888 9 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 7 99 33 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A-AAA--A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGA-C-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A-AAA--A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGC-TGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCA-TCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A-AAA--ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA----T--GTTTGACGG-A-ATCA----------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTA-TCT------CCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA-AAA--A-TCAAAATCACGGCAG-AGCC
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT-------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC----------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A-AAA--A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT------------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CATTTT---GACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A-AAA--A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAA-TATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CATTTT---GATCT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAAC-CGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A-AAA--A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A-AAA--A-
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1111111 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 11 1 11 44444444444
lowQualScore : 8888888 1 5555 3 0 2 7777777 00 5 5 66666666666666666666666666666666666 1 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 77 5 66 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ....... . .... . . . ....... .. . . ................................... . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . .. . .. ... . . . . ...... .. . . .. ........... . .
lowQualScore : 7777777 0 3333 3 7 5 5555555 44 7 7 88888888888888888888888888888888888 9 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 99 7 33 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGA-CTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGCTGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCA-TCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A--AAA-ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA----T--GTTTGACGG-A-ATCA----------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTA-TCT------CCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA--AAA-A-TCAAAATCACGGCAG-AGCC
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC----------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A--AAA-A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT-----------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CATTTT---GACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A--AAA-A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAATATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CATTTT---GATCT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAACCGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A--AAA-A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A--AAA-A-
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 33333333 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 11 1 11 44444444444
lowQualScore : 88888888 1 5555 3 0 2 7777777 00 5 5 66666666666666666666666666666666666 1 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 5 77 66 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ........ . .... . . . ....... .. . . ................................... . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . . .. .. ... . . . . ...... .. . . .. ........... . .
lowQualScore : 00000000 0 3333 3 7 5 5555555 44 7 7 88888888888888888888888888888888888 9 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 7 99 33 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A-AAA--A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGA-C-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A-AAA--A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGC-TGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCA-TCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A-AAA--ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA----T--GTTTGACGG-A-ATCA----------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTA-TCT------CCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA-AAA--A-TCAAAATCACGGCAG-AGCC
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT-------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC----------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A-AAA--A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT------------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CATTTT---GACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A-AAA--A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAA-TATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CATTTT---GATCT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAAC-CGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A-AAA--A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A-AAA--A-
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1111111 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 11 1 11 44444444444
lowQualScore : 8888888 1 5555 3 0 2 7777777 00 5 5 66666666666666666666666666666666666 1 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 77 5 66 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ....... . .... . . . ....... .. . . ................................... . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . .. . .. ... . . . . ...... .. . . .. ........... . .
lowQualScore : 7777777 0 3333 3 7 5 5555555 44 7 7 88888888888888888888888888888888888 9 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 99 7 33 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGA-CTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGCTGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCA-TCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A--AAA-ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA----T--GTTTGACGG-A-ATCA----------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTA-TCT------CCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA--AAA-A-TCAAAATCACGGCAG-AGCC
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC----------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A--AAA-A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT-----------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CATTTT---GACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A--AAA-A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAATATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CATTTT---GATCT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAACCGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A--AAA-A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A--AAA-A-
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 33333333 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 11 1 11 44444444444
lowQualScore : 88888888 1 5555 3 0 2 7777777 00 5 5 66666666666666666666666666666666666 1 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 5 77 66 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ........ . .... . . . ....... .. . . ................................... . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . . .. .. ... . . . . ...... .. . . .. ........... . .
lowQualScore : 00000000 0 3333 3 7 5 5555555 44 7 7 88888888888888888888888888888888888 9 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 7 99 33 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A-AAA--A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGA-C-TGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A-AAA--A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGC-TGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCA-TCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A-AAA--ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA----T--GTTTGACGG-A-ATCA----------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTA-TCT------CCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA-AAA--A-TCAAAATCACGGCAG-AGCC
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT-------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC----------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A-AAA--A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT------------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CATTTT---GACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A-AAA--A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAA-TATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CATTTT---GATCT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAAC-CGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A-AAA--A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A-AAA--A-
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1111111 1111 1 2222222 00000000000000000000000000000000000 1111 111 11 11 1 222222 11 1 11 44444444444
lowQualScore : 8888888 1 5555 3 0 2 7777777 00 5 5 66666666666666666666666666666666666 1 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 77 5 66 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ....... . .... . . . ....... .. . . ................................... . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . .. . .. ... . . . . ...... .. . . .. ........... . .
lowQualScore : 7777777 0 3333 3 7 5 5555555 44 7 7 88888888888888888888888888888888888 9 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 99 7 33 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGA-CTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGCTGTCTGCATGATAAACAT-T-GTTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATT-TACA-TAT-TATTGTGCGGCTAAATGG-AGATCA-TCTCTAGATCTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--G-A--AAA-ATTCAAGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATT-TACAGTATGTA----T--GTTTGACGG-A-ATCA----------CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATT-AACA-TAT-AACTGCACGGCTTAATGGCG-ATTA-TCT------CCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GAA--AAA-A-TCAAAATCACGGCAG-AGCC
gi|14 : ATCTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : TCTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT------------TGATA--TAT-G--TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AAT-TATA-CAT-T-----GTGG-----TGG-A-ATC----------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGG-A--AAA-A--CAAGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT-----------CTGTCGGATAAACAT-ATGCTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTGTTATGTA-TAC-TA-----------AATA------CATTTT---GACCT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-G-A--AAA-A-
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAATATGCCTACTCGATAAACACAG-GTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--T-TATG-TAT----------ACTT-ATA------CATTTT---GATCT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTGATAAACCGCCTACCTGATAAACAT-G-GTTT-ATCACGTCAATGCAAGTTAATTA--TACATgg
gi|5 : aattAA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTtttgacccggacgaaaaagcttgaatctgattttcaatttttaaaaaaaagactgattaaaaatatggacataataaagataatacaatgttagtgtctgatattattaatttcatcaggt
gi|6 : aattttatcatgtaaatgcatttatttccgttgataaaccgcctacctgataaacatggtttatcacgtcaatgcaagttaattatacattttgacccggacgaTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--G-A--AAA-A---AAATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--G-ATAAAACA-TTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAACTGTCTGCCTGATAAACAT-C-ATTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACT-TACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--T-A--AAA-A-
blockSeqs : AATATGC C ATG T G TTCTTCA A G AACTGCACGGCTTAATGGCGATTATCT A T G C C TT TT G CA A . GAT G TAA GG A T C C GTT G A GG A TA C T ATC G T A C AACTC . G G CT AAATTTGAGAC A T
blockSeqs : AAACCGC T AGG . G TACTTCA . . GTATGTTTGACGGAATCA A . G T T C . A . A . . A . . G . C C TC . A A . . . T AAC A . . T TTTC . . A . TA A T
blockSeqs : GAACTGT C GG . G TTTA . . ACTTATACATTTTGA A . T T T C . A . A . . T . . A . C A TC . T . . . . . TTA T . . . G . . . .
blockSeqs : . C CA . C TG . . TAAATACATTTTGA A . G T T C . T . A . . G . . T . T T TT . T . . . . . CAT C .
blockSeqs : . . G . . T . . TGTGGTGGAATC A . G T T C . C . G . . T . . G . A A TC . T . . . .
blockSeqs : . . A . G A T T . A . C . . T . . T . A A TT . T . . . .
blockSeqs : . . T A T T . T . . . . T . . A A
blockSeqs : . . . T T T . T . . G .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqs : .
blockSeqCons : NG** TTCG*** NGCTGTGCGNTTTGA******************** **** **
originalCons : TTATCATGTCAATGCATTCATTTCTGTTGATGA-CTGCCTGCCTGATAAACAT-G-GTTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATT-TACA-TAT-TA----GCGGCTTAATGG-A-ATCA-TCT---GATCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A-TCAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
finalCons : TTATCATGTCAATGCATTCATTTCTGTTGATGA-CTGCCTGCCTGATAAACATNG--TTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTATTCG---TGACGTCATT-TACA-TATNGCTGTGCGNTTTGA--------------------TCTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--G-A--AAA-A--CAAGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Alignments
lowQualScore : 5555555555555555 11 1 3333333 9999999999999999999999999999999999999999999999 1111 111 11 2222222 1 222222 11 1 11 44444444444
lowQualScore : 9999999999999999 44 6 3 3 2 5555555 5 8 5 3333333333333333333333333333333333333333333333 5 2 4 4 2 2 44 44 1 66 5 2222 000 1 888 66 1 4 1 1 666 5 1 33 5 0000000 333 1 8 0 1 333333 88 0 6 33 66666666666 3 3
lowQualScore : ................ .. . . . . ....... . . . .............................................. . . . . . . .. .. . .. . .... ... . ... .. . . . . ... . . .. . ....... ... . . . . ...... .. . . .. ........... . .
lowQualScore : 0000000000000000 22 7 3 5 5 7777777 3 5 0 7777777777777777777777777777777777777777777777 7 2 0 1 6 6 00 66 0 11 0 1111 000 6 888 11 0 4 4 0 222 7 0 66 7 7777777 888 0 0 0 0 333333 33 0 5 88 88888888888 2 2
consensus : TTATCATGTCAATGCATTCATTTCTGTTGATGA-C-TGTCTGCCTGATAAACATC-G-TTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCANTTACA-TATN-TT--GTGCGNTT----------------T-GAT-----------CTACAGGACGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--GA-AAAA--CA---AGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
Reference ( family-1919 ) : TTATCATGTCAATGCATTCATTTCTGTTGATGA-C-TGCCTGCCTGATAAACATN-G-TTT-ATCACGTCAACGCAAGTTTATCAGGCACATGACGTCATTATGTA---TTCGTGACGTCATTTACA-TATNGCT--GTGCGNTT----------------T-GAT-----------CTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTC-A--AANAAA--AGACGAACTAGAAATATTGA----CATGAT---AAATAGAATAC---CATGTT--ANTGTCTA-ATATTATCAANT-TCATCAGGTTCGG-CNC--GA-AAAA--CA---AGNTCTCGNCAG-AGCCT-TGCTATGNTAT--TTT-TCTA--CTTCAACTGATGAA-TTTGAG--ATTA---------TATCAGACACTAACATGGTATTCTCTATAT
gi|1 : TCATCATGTCAATGTATTCATTTCTGTTGATGAGC-TGTCTGCATGATAAACATT-G-TTTTATCAACTCAACACAAGTTTACCAGGCACATGACATCATTATGTA---TTTGTGATGTCATTTACA-TATTATT--GTGCGGCTAAATGGAGATCATCTCTAGAT-----------CTACGGGCTGTAACAA-AAGTTTGATACTGATTTTAAGTCTC-A--AACAAA--GGACACACTGGAAATATTGACAGTCATGAT---CAATAGTATAC---CGTGTT--ATTGTCT--ATATTATCAACT-GTATCAGGTCTGA-CAT--GA-AAAATTCA---AGTTTTTGACAG-AGCCT-TGCAATGGTAT--TAT-TCTAAGCCTCAACTGATAAA-TCT--G--ATTA---------TATCAGACACTAACATGGTATTCTGTATAT
gi|10 : TCATCAGGCA---T--GTGACATCATTTACAGTATG--T--ATG---TT----------------T-GACGGAATCA----CTACAGGATGTAACAC-AAGTTTGATGCTGATTTCCAATCTC-A--
gi|11 : tagtATTAACA-TATAACT--GCACGGCT----------------T-AATGGCGATTATCTCCACAGGCTGTAACAA-ATGTTCGATGCCAATTTTCCATTTC-A--t
gi|12 : ACAGGATGCAACAA-AAGATGGATTCTGGTTT-CAATTTC-A--TAGAAG--CGACGAATTAGAAATAT
gi|13 : ggaatcaaaGTA--AATATCTA-ATATTATCAACG-TCATCAGGTTCGG-TAC--GA-AAAAATCA---AAATCACGGCAG-AGCC
gi|14 : AT-----------CTACAGGCTGTAACAC-AAGTTTGATGCTCATTATCAATTTC-A--TAAAAA--Agcat
gi|15 : T-----------CTACAAGATGTTAAAATAAGTTTGATGCTGATTTTTAATTTT-A--
gi|16 : gaattATGAA-TTTGAG--AC-----------TATCGGACACTAACAAAG-ATTCTCTGTAT
gi|2 : TTATTATGTCAATGCATTTATTTATGTTGAT-------------TGATA--TAT--G-TTT-ATCACGTCAATGTAAGTTTATAAGGCACATTGCGTCATTATGTA---T----------AATTATA-CATTGTG--GTGGAATC----------------T---------------CTACAGGATGTAACAA-AAGTTTGATGCTGATTTTCAATTTT-ATTAAAAAA--AGACAATTTAGAAATATTGA----CATGAT---AAAGAGAATGC---CATGTT--AGTGTCTA-ATATTATCAACT-TCATCAGGTTCGG-CACGGGA-AAAA--CA---AGAACTCGACAG-AGCCT-CG
gi|3 : tttTTATCATGTCAATGTATTCATTTCTGT------------CTGTCGGATAAACATATG-CTT-ATCACGTCATTGCAAGTTTATCAGGCACATGGCGTCATTATATATTCTTCATGACGTTG-TTATG-TATA-CTAAATACATTT----------------T-GAC-----------CT---GGACAGAACTA-CA-TTTAAC-CTTACTTAAAAT----G--ACTAAA--AAATGAACTAGAAATATTAA----CATGAT---AAAAAGAATAC---CATGTA--AATGTCTA-ATATTATCAAAT-TTATCAGATGAGA-CTTA-GA-AAAA--
gi|4 : TATCATGTCAATGCATTCATTTCTGTTGATAA-TATGCCTACTCGATAAACACA-GGTTT-ATCACGTCGTTGCATGTTTATCAGGCACATGACGTCATTATGTATACTTCATGACGTC--TTATG-TATACTT--ATACATTT----------------T-GAT-----------CT---GGACGGAAC-------------CTTAGTTACAAT----G--ACCAAG--AAACGAACTAGAAATATTGA----CATGAT---AGATAGAACACTAACATTGT--ATCTTCTATATATT
gi|5 : TTATCATGTAAATGCATTTATTTCCGTTG-----------------ATAAAC--C-G-CCT-ACCTGATAAACATG-GTTTATCA---------CGTCA--ATGCA---------A-GTTAATTATA-CAT------------TT----------------T-GAC-----------CC---GGACG--A-AA-AAGCTTGAATCTGATTTTCAATTTTTA--AAAAAA--AGACTGATTAAAAATATGGA----CATAAT---AAAGATAATAC---AATGTT--AGTGTCTG-ATATTATTAATT-TCATCAGGTgg
gi|6 : aattTTTT-A--AATAAACAAAGCGCGC---AAATAATGA----CATGATGATAAATAGAATA-----GTGTTGGATAGTTTA-AAAT----AAAT--AATCAGTTTCGGGTTC--GA-AAAA---A---AATTATT-TTAGTATTTT-TTCTCTACCACAACTC-TCTA--CTTCAACTGAAAAAGTTTAAACTATTA---------T-TTAGGCACTAACATGGTTTTCTCTAT
gi|7 : aaatcagttgttgcgt--AATAAA--ACACG--CCAATAATATT-------ATGAT---AAATAAAATAC---CATGTC--ATTTCCTA-TAAGTCTAAAATGTTTTC-GGCTTGG-CTC--GATAAAA--CATTAAGCATTCGCCAA-TGCTTATGCTAAGTTGT--TTTCTCTA--TTTCAAATGATGCA-TTTGAG--ATAAATTTGAGACTATCAGACACTAACCTGTTATTCTCTA
gi|8 : TTATCATGTCAATGCATTCATTTCTGTTGATGAAC-TGTCTGCCTGATAAACATC-A-TTTTATCACATCAACACAAGTTTATCACGCACATGACATCATTATGTA---TTTATGATGTCACTTACA-TA
gi|9 : AGAATAT---CATATT--TGTGTCTG-ATAGTCTAAAAT-TTATCAGGTTCGT-TTC--TA-AAAA--