lowQualScore : 111 11 1111111 333333333333 1 1 1 1111 11 1111 11 11111 9999999999999999999999999999 1 1
lowQualScore : 0 888 4 11 4 2 4444444 1 666666666666 0 99 3 0 1 1 4 6 2 2 4 3333 1 4 88 0 99 1 0000 4 66666 0 2 99 66 22222 66 6666666666666666666666666666 1 3 0 1 7
lowQualScore : . ... . .. . . ....... . ............ . .. . . . . . . . . . .... . . .. . .. . .... . ..... . . .. .. ..... .. ............................ . . . . .
lowQualScore : 1 111 0 99 0 8 0000000 8 111111111111 8 22 9 8 7 4 1 5 4 6 0 6666 9 4 33 8 88 1 4444 4 22222 2 4 22 99 55555 99 2222222222222222222222222222 0 5 0 0 0
consensus : TCACTAGGAACTCTGAAA-ACGC-TTAAA-ATA---A--NAANA------TATGG-ACTGACTTGCCTTAAA--TGTACTGACTCCATACTGACACGGTCTTACTACGTACTGACTACATACTGA-CT-GGGGTACTGA-AATGCGCTGACTGAGGTATTACNA-GTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TAC--CCCC--------------AAAATA-GTT-T--TACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
Reference ( gi|5 ) : TCACTAGGAACTCTAAAA-ATGC-TGGAA-ACA---A--AAATA------TACTA-ACTGACTTGCCTTCAA--TGTGCTTACTCCATACTGACACAGTCTTACTACATACTGCCTACATACTGA-CT-GTGGTACTGA-AATGCGCTGACACAGGTATTACAA-GTCCA-TTTTATAAGACCGTAAAGGGTATTATA--A-----TAC--CCCC--------------AAAATACATTAT--TACAAGTACTTTTACAGTAGACTGATAAGCCTCTGATCCA
gi|4 : TCACTAGTAACTCTGAAACATAC-TTTAA-ATA---A--TAAAA------TTTGG-GCTG-CTTGTCTTACA--TGTACTGACGTCATGCTGACACAGCCTTACAACCAACTGACTGTATACAAA-CT-GGGTTACGGA-AATGTGCTGACTGAGTTAT--CAATATTCAGTCTTTTAAAACCATAAA-TATACTATT--A-----TAC--CCCCTAATT---------AAAACAGCTT-T--TACACGTACTATAACAGTGGAGCGATACACCTTTATTCCA
gi|8 : caCACTAGGAACTCTGAAACACTC-TTAAA-ATG---C--AAATAC-----TATGG-ATTGATTTGCCT--AAGGTGTACTGACTCTATACTGACACGGTCTTAGTATGTACTGACTACTTACTGA-CT-GGGGCACTAA-AATGTGCTGACTGGGGTATAACTA-GTCCG-TACCATCAGACCATTAACAGTATTGAA--A-----TCC--CCCctgctga
gi|11 : aCACTTAGAACAC-AAAT-ACAC-TTAAA-ATAGC-A--AAGTA------T--TG-ACCGACTTGCATTCAC--TGTACTGATTCCATACTGACACGGTCTTTCTTCGTA----CAATATACTAC-CT-GGAGTACTGA-AATGCGCTGACTGAGGTCTAATAA-ATACA-TTttaccca
gi|12 : taTAGGAACTCTGAAATACGC-TTAAA-ACA---A--CAATA------TATGG-ACTGACTTGCCTTAAA--CGTATTGATCTCATACTTACACGCTCTTACTGCATACTGACTACA
gi|14 : AAGTCCGAAA-A-GCGTGAAA-ATT---A--CAACA------TATGG-ACTGACTTGCCTTGAA--TG----TACCACATAC
gi|16 : AACTCTAAAATAAAC-TTAAA-ATA---A--CAAAA------TATGG-AGTGACTTGTCTTAAA--TGT
gi|9 : aTACAA-ACGC-TGAAACACATTTA--AAATAACAAAATATGG-ACTAACTTGTC--CAACATGTACAGATTCCATATTGTTATAGTGTTACTCCGTACTGACTATATACTGT-CT-GGAGTACTGA-CATCCGCTGACATAGGTTTTACTA-GACTG-TCTTATA--------------ATTATA--A-----TAC--Ca
gi|2 : AA-ACGC-TTAAA-ATA---A--CAAAA------TATGG-ACTGACCTAACTTAAC--GGTACTGACCCCATACTGACATGGTCTTA--AAAGACCGTC-A-ATACCGT-AT-AAGGTATT----AT-----------AGTAT----G-GTC-----TTATAAGACCGTAAATGGTATTATA--A-----TACCTCCCC--------------AAAA---GGTCT--TATAAGTAATTTTACAGTATAGTGACATGCCTCTGTTCCAa
gi|3 : atA-ACGC-TGAAA-ATA---ACAAAATA------TG-------GACTTGCCGTAAA--TGTACTGACTCTATACTGATTTGGTGTTACTACGTACTAACTACATACTGA-ATAGT-TTACTTC-ACTA-GCTG---CAGTTA-TACAA-GTCCA-TCTTATAAAACTGTAAAAGGTATAATACCAACCCCCAC--CCCCACCCCACCCCTCAAAAAATAGGTC-T--TACAAGTACTTTTGCAATAGACTAATAACCCTTTGTTCCActgaggaaccccgtcgctacggaatggctttaccatggtgatttaccgcagaatagtgatataattcctcctgcaagactatgttttatgtttata
gi|7 : ttaattcGC-TGAAA-ATG---A--TAATA------CATTGGAGTGATTTGCCTTATA--TATGCTGACTCTATACTGACATAGTCTTACTACGTACTTACTACATACTGA-CT-GGGGTACTAG-ACTACGCTGACATAGGTATTACGA-GTCCA-TCTTATAAGACCGTAAATAGTATTATA--A-----TAC--TCCC--------------AAAA--CATGGTCATACAAGTACTTTTACAGccgccgaaacatatgcctacatgtttacattaccgcagagatttcatagtg
gi|10 : ttaccA---A--AAAAA------T-CTA--CCGAATTGCCTTAAA--TACACTAAC-CAATA-TG-----GTCTAACTATGTACTG-------ACTGAGCTCGAGGTACTGACAATGTGATTATGGAG-----AC---GTC-A-CT-----AGACCTTGAAGAGTATTATA--A-----TAG--CGAC--------------GA--------AC--TAAAAGTACATTTACAGTAGAGTGTTAAGCaa
gi|13 : TGCCTTAAA--TGTGCTTACTCCATACTGACACAGCCTTACTACGTGCTGACAATATACT-A-CT-
gi|1 : tcATACTGGCATGAT-TTACTGCGTATTTACTACATACTGA-AT-TTAGTGCTGA-TACTCGCTAGCTGAGGTATTACCA-GTCCG-TCTAATAAAAGCGATAACTGTATTATA--A-----TAG--GTTC--------------AAACTATGGTCT--TGGAAATAC-ATTACAGTAGAGTGACAAGCCTCTGTTCCtg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): GTGATAAGCCTCTGTTTGCACAACTATCCAAACACCTAGTAACATATCAGCTTCACCGATGTGACTTACCGCAGACTTATATCAAATTTCACCATAGCATTTTCTTTGAAAAGACTTGGAAAAAATGTCTGGATTTAATAAGGGTCGTATCAAAATACAAGTGATGATAATCTCATATTACATGTATCAGTTATTTATTATATTTGTTCTTAATTTAA
Unaligned ( gi|15 ): CTTGGTAAACTTAAACATACTTAAAATAACCAAACATGGGCTGACTTGTCTTAAATGTG
Alignments
lowQualScore : 2 111111111 11 11111 5555555555555555555555555555
lowQualScore : 1 3 1 1 3 3 4 0 3 3 3 3 2 0 4 777 555555555 1 4 1 22 66 11111 66 7777777777777777777777777777 1
lowQualScore : . . . . . . . . . . . . . . . ... ......... . . . .. .. ..... .. ............................ .
lowQualScore : 8 3 0 0 1 1 4 4 3 6 6 6 3 7 0 111 888888888 0 4 1 99 11 11111 11 3333333333333333333333333333 7
consensus : TCACTAGGAACTCTGAAACA-CGCTTAAAATAACAAAA-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--ATG-G-TC-TTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
Reference ( family-1916 ) : TCACTAGGAACTCTGAAA-A-CGCTTAAAATAANAANA-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACNAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--ATA-G-TT-TTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
gi|1 : AATGTACAGTCGCAATACTGGCATGAT-TTACTGCG-TATTTACTACATACTGA-A-T-TTAGTGCTGA-TACT--CGCTAGC------TG-AGGTATTACCAGTCCG-TCTAATAAAAGCGATAACTGTATTATA--A-----TAGG--TTC--------------AAACTATG-G-TC-TTGGAAATAC-ATTACAGTAGAGTGACAAGCCTCTGTTCC
gi|10 : AAAAAAA-TCT---ACCGAATTGCCTTAAATACACTAAC--CA-----ATATGGTCTAACTATG-TACTG-------ACTGAGC-TCGAGGTACTGACAATG--TGATTAT------GG-AGACGTCACT--------------AGACCTTGAAGAGTATTATA--A-----TAGC--GAC--------------GAA-----------CTAAAAGTACATTTACAGTAGAGTGTTAAGCcctgctgcaacacgtagcaacactgttacagactacatttaccaatgtgactgcatactaatatcaactctttggttgcttcatatactttattttaataattcgttgaatcaatgtctgaatttcataagtgttgtatcacaatacatcgcataaagttgttgataatttcacattttcatttatttatcaattaatttaaa
gi|11 : CACTTAGAACAC--AAATA-CACTTAAAATAGCAAAG-TAT-TGACCGACTTGCATTCACTGTACTGATTCCATACTGACACGGTCTTTCTTCG-TAC--A--ATATACTAC-C-T-GGAGTACTGA-AATG--CGCTGAC------TG-AGGT
gi|12 : taTAGGAACTCTGAAATA-CGCTTAAAACAACAATA-TAT-GGACTGACTTGCCTTAAACGTATTGATCTCATACTTACACGCTCTTACTGCA-TACTGACTACActaataaatacatt
gi|13 : TGCCTTAAATGTGCTTACTCCATACTGACACAGCCTTACTACG-TGCTGACAATATACT-A-C-T-
gi|14 : tcAAGTCCGAAA-AGCG-TGAAAATTACAACA-TAT-GGACTGACTTGCCTTGAATGTACtg
gi|15 : AACT-TAAAC-A-TACTTAAAATAACCAAA-CAT-GGGCTGACTTGTCTTAAATGTcacatac
gi|16 : cttggtaAACTCTAAAATA-AACTTAAAATAACAAAA-TAT-GGAGTGACTTGTCTTAAATGTAg
gi|2 : aAA-A-CGCTTAAAATAACAAAA-TAT-GGA-------------------CTGAC------CTAAC------TTA--ACGGTACTGACCCCATACTGA-CAT-GG--T-CTTA-AAAGACCGTCAATACCGTATA-AGGTATTA-TAGTATGGTCTTATAAGACCGTAAATGGTATTATA--A-----TACCTCCCC--------------AAA--A-G-G-TC-TTATAAGTAATTTTACAGTATAGTGACATGCCTCTGTTCCA
gi|3 : atA-A-CGCTGAAAATAACAAAA-TAT-GGACT----TGCCGTAAATGTACTGACTCTATACTGATTTGGTGTTACTACG-TACTAACTACATACTGA-A-T-AGTTTACT-----T---CACTAGC------TGCAGTTA-TACAAGTCCA-TCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACC--CCCACCCCACCCCTCAAAAA--ATAGG-TC-TTACAAGTACTTTTGCAATAGACTAATAACCCTTTGTTCCActgaggaaccccgtcgctacggaatggctttaccatggtgatttaccgcagaatagtgatataattcctcctgcaagactatgttttatgtttata
gi|4 : ttaattcTCACTAGTAACTCTGAAACA-TACTTTAAATAATAAAA-TTT-GGGCTG-CTTGTCTTACATGTACTGACGTCATGCTGACACAGCCTTACAACC-AACTGACTGTATACAAA-C-T-GGGTTACGGA-AATG--TGCTGAC------TG-AGTTATCAATATTCAG-TCTTTTAAAACCATAAAT-ATACTATT--A-----TACC--CCCTAATT---------AAA--ACA-GCTT-TTACACGTACTATAACAGTGGAGCGATACACCTTTATTCCAccgccgaaacatatgcctacatgtttacattaccgcagagatttcatagtg
gi|5 : caTCACTAGGAACTCTAAAA-A-TGCTGGAAACAAAAATA-TAC-TAACTGACTTGCCTTCAATGTGCTTACTCCATACTGACACAGTCTTACTACA-TACTGCCTACATACTGA-C-T-GTGGTACTGA-AATG--CGCTGAC------AC-AGGTATTACAAGTCCA-TTTTATAAGACCGTAAAGGGTATTATA--A-----TACC--CCC--------------AAA--ATACA-TTATTACAAGTACTTTTACAGTAGACTGATAAGCCTCTGATCCActgctga
gi|7 : -CGCTGAAAATGATAATA-CATTGGAGTGATTTGCCTTATATATGCTGACTCTATACTGACATAGTCTTACTACG-TACTTACTACATACTGA-C-T-GGGGTACTAG-ACTA--CGCTGAC------AT-AGGTATTACGAGTCCA-TCTTATAAGACCGTAAATAGTATTATA--A-----TACT--CCC--------------AAAACATG-G-TC-ATACAAGTACTTTTACAG
gi|8 : ttacCACTAGGAACTCTGAAACA-CTCTTAAAATGCAAATACTAT-GGATTGATTTGCCTAAGGTGTACTGACTCTATACTGACACGGTCTTAGTATG-TACTGACTACTTACTGA-C-T-GGGGCACTAA-AATG--TGCTGAC------TG-GGGTATAACTAGTCCG-TACCATCAGACCATTAACAGTATTGAA--A-----TCCC--CCaa
gi|9 : aAACGCTGAAACA-CATTTAAAATAACAAAA-TAT-GGACTAACTTGTCCAACATGTACAGATTCCATATTGTTATAGTGTTACTCCG-TACTGACTATATACTGT-C-T-GGAGTACTGA-CATC--CGCTGAC------AT-AGGTTTTACTAGACTG-TCTTATA--------------ATTATA--A-----TACC--ttaccca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGATAAGCCTCTGTTTGCACAACTATCCAAACACCTAGTAACATATCAGCTTCACCGATGTGACTTACCGCAGACTTATATCAAATTTCACCATAGCATTTTCTTTGAAAAGACTTGGAAAAAATGTCTGGATTTAATAAGGGTCGTATCAAAATACAAGTGATGATAATCTCATATTACATGTATCAGTTATTTATTATATTTGTTCTTAATTTAA
Alignments
lowQualScore : 111111111 11 11111 55555555555555555555555555
lowQualScore : 3 3 3 3 4 0 3 3 3 3 2 0 4 777 555555555 1 4 1 22 66 11111 66 44444444444444444444444444 1
lowQualScore : . . . . . . . . . . . . . ... ......... . . . .. .. ..... .. .......................... .
lowQualScore : 7 1 1 1 4 4 3 6 6 6 3 7 0 111 888888888 1 4 1 99 11 11111 11 99999999999999999999999999 7
consensus : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
Reference ( family-1916 ) : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
gi|1 : AATGTACAGTCGCAATACTGGCATGAT-TTACTGCG-TATTTACTACATACTGA-A-T-TTAGTGCTGA-TACT--CGCTAGC------TG-AGGTATTACCAGTCCG-TCTAATAAAAGCGATAACTGTATTATA--A-----TAGG--TTC--------------AAACTAT--GG-TCTTGGAAATAC-ATTACAGTAGAGTGACAAGCCTCTGTTCC
gi|10 : AAAAAA-A-TCT---ACCGAATTGCCTTAAATACACTAAC--CA-----ATATGGTCTAACTATG-TACTG-------ACTGAGC-TCGAGGTACTGACAATG--TGATTAT------GG-AGACGTCACT--------------AGACCTTGAAGAGTATTATA--A-----TAGC--GAC--------------GAA-----------CTAAAAGTACATTTACAGTAGAGTGTTAAGCcctgctgcaacacgtagcaacactgttacagactacatttaccaatgtgactgcatactaatatcaactctttggttgcttcatatactttattttaataattcgttgaatcaatgtctgaatttcataagtgttgtatcacaatacatcgcataaagttgttgataatttcacattttcatttatttatcaattaatttaaa
gi|11 : CACTTAGAACAC--AAATACACTTAAAATAGCAAA-G-TAT-TGACCGACTTGCATTCACTGTACTGATTCCATACTGACACGGTCTTTCTTCG-TAC--A--ATATACTAC-C-T-GGAGTACTGA-AATG--CGCTGAC------TG-AGGT
gi|12 : taTAGGAACTCTGAAATACGCTTAAAACAACAAT-A-TAT-GGACTGACTTGCCTTAAACGTATTGATCTCATACTTACACGCTCTTACTGCA-TACTGACTACActaataaatacatt
gi|13 : TGCCTTAAATGTGCTTACTCCATACTGACACAGCCTTACTACG-TGCTGACAATATACT-A-C-T-
gi|14 : tcAAGTCCGAAAAGCG-TGAAAATTACAAC-A-TAT-GGACTGACTTGCCTTGAATGTACtg
gi|15 : CTTAAACATACTTAAAATAACCAA-A-CAT-GGGCTGACTTGTCTTAAATGTcacatac
gi|16 : cttggtaaaAACTCTAAAATAAACTTAAAATAACAAA-A-TAT-GGAGTGACTTGTCTTAAATGTAg
gi|2 : aACGCTTAAAATAACAAA-A-TAT-GGA-------------------CTGAC------CTAAC------TTA--ACGGTACTGACCCCATACTGA-CAT-GG--T-CTTA-AAAGACCGTCAATACCGTATA-AGGTATTA-TAGTATGGTCTTATAAGACCGTAAATGGTATTATA--A-----TACCTCCCC--------------AAA--A---GG-TCTTATAAGTAATTTTACAGTATAGTGACATGCCTCTGTTCCA
gi|3 : ataaACGCTGAAAATAACAAA-A-TAT-GGACT----TGCCGTAAATGTACTGACTCTATACTGATTTGGTGTTACTACG-TACTAACTACATACTGA-A-T-AGTTTACT-----T---CACTAGC------TGCAGTTA-TACAAGTCCA-TCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACC--CCCACCCCACCCCTCAAAAA--ATA-GG-TCTTACAAGTACTTTTGCAATAGACTAATAACCCTTTGTTCCActgaggaaccccgtcgctacggaatggctttaccatggtgatttaccgcagaatagtgatataattcctcctgcaagactatgttttatgtttata
gi|4 : ttaattcaTCACTAGTAACTCTGAAACATACTTTAAATAATAAA-A-TTT-GGGCTG-CTTGTCTTACATGTACTGACGTCATGCTGACACAGCCTTACAACC-AACTGACTGTATACAAA-C-T-GGGTTACGGA-AATG--TGCTGAC------TG-AGTTATCAATATTCAG-TCTTTTAAAACCATAAAT-ATACTATT--A-----TACC--CCCTAATT---------AAA--AC--AGCTTTTACACGTACTATAACAGTGGAGCGATACACCTTTATTCCAccgccgaaacatatgcctacatgtttacattaccgcagagatttcatagtg
gi|5 : caTCACTAGGAACTCTAAAA-ATGCTGGAAACAAAAAT-A-TAC-TAACTGACTTGCCTTCAATGTGCTTACTCCATACTGACACAGTCTTACTACA-TACTGCCTACATACTGA-C-T-GTGGTACTGA-AATG--CGCTGAC------AC-AGGTATTACAAGTCCA-TTTTATAAGACCGTAAAGGGTATTATA--A-----TACC--CCC--------------AAA--ATACAT-TATTACAAGTACTTTTACAGTAGACTGATAAGCCTCTGATCCActgctga
gi|7 : CGCTGAAAATGATAAT-A-CATTGGAGTGATTTGCCTTATATATGCTGACTCTATACTGACATAGTCTTACTACG-TACTTACTACATACTGA-C-T-GGGGTACTAG-ACTA--CGCTGAC------AT-AGGTATTACGAGTCCA-TCTTATAAGACCGTAAATAGTATTATA--A-----TACT--CCC--------------AAAACAT--GG-TCATACAAGTACTTTTACAG
gi|8 : ttacCACTAGGAACTCTGAAACACTCTTAAAATG-CAAATACTAT-GGATTGATTTGCCTAAGGTGTACTGACTCTATACTGACACGGTCTTAGTATG-TACTGACTACTTACTGA-C-T-GGGGCACTAA-AATG--TGCTGAC------TG-GGGTATAACTAGTCCG-TACCATCAGACCATTAACAGTATTGAA--A-----TCCC--CCaa
gi|9 : aAACGCTGAAACACATTTAAAATAACAAA-A-TAT-GGACTAACTTGTCCAACATGTACAGATTCCATATTGTTATAGTGTTACTCCG-TACTGACTATATACTGT-C-T-GGAGTACTGA-CATC--CGCTGAC------AT-AGGTTTTACTAGACTG-TCTTATA--------------ATTATA--A-----TACC--ttaccca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGATAAGCCTCTGTTTGCACAACTATCCAAACACCTAGTAACATATCAGCTTCACCGATGTGACTTACCGCAGACTTATATCAAATTTCACCATAGCATTTTCTTTGAAAAGACTTGGAAAAAATGTCTGGATTTAATAAGGGTCGTATCAAAATACAAGTGATGATAATCTCATATTACATGTATCAGTTATTTATTATATTTGTTCTTAATTTAA
Alignments
lowQualScore : 111111111 11 11111 55555555555555555555555555
lowQualScore : 3 3 3 3 4 0 3 3 3 3 2 0 4 777 555555555 1 4 1 22 66 11111 66 44444444444444444444444444 1
lowQualScore : . . . . . . . . . . . . . ... ......... . . . .. .. ..... .. .......................... .
lowQualScore : 7 1 1 1 4 4 3 6 6 6 3 7 0 111 888888888 1 4 1 99 11 11111 11 99999999999999999999999999 7
consensus : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
Reference ( family-1916 ) : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
gi|1 : AATGTACAGTCGCAATACTGGCATGAT-TTACTGCG-TATTTACTACATACTGA-A-T-TTAGTGCTGA-TACT--CGCTAGC------TG-AGGTATTACCAGTCCG-TCTAATAAAAGCGATAACTGTATTATA--A-----TAGG--TTC--------------AAACTAT--GG-TCTTGGAAATAC-ATTACAGTAGAGTGACAAGCCTCTGTTCC
gi|10 : AAAAAA-A-TCT---ACCGAATTGCCTTAAATACACTAAC--CA-----ATATGGTCTAACTATG-TACTG-------ACTGAGC-TCGAGGTACTGACAATG--TGATTAT------GG-AGACGTCACT--------------AGACCTTGAAGAGTATTATA--A-----TAGC--GAC--------------GAA-----------CTAAAAGTACATTTACAGTAGAGTGTTAAGCcctgctgcaacacgtagcaacactgttacagactacatttaccaatgtgactgcatactaatatcaactctttggttgcttcatatactttattttaataattcgttgaatcaatgtctgaatttcataagtgttgtatcacaatacatcgcataaagttgttgataatttcacattttcatttatttatcaattaatttaaa
gi|11 : CACTTAGAACAC--AAATACACTTAAAATAGCAAA-G-TAT-TGACCGACTTGCATTCACTGTACTGATTCCATACTGACACGGTCTTTCTTCG-TAC--A--ATATACTAC-C-T-GGAGTACTGA-AATG--CGCTGAC------TG-AGGT
gi|12 : taTAGGAACTCTGAAATACGCTTAAAACAACAAT-A-TAT-GGACTGACTTGCCTTAAACGTATTGATCTCATACTTACACGCTCTTACTGCA-TACTGACTACActaataaatacatt
gi|13 : TGCCTTAAATGTGCTTACTCCATACTGACACAGCCTTACTACG-TGCTGACAATATACT-A-C-T-
gi|14 : tcAAGTCCGAAAAGCG-TGAAAATTACAAC-A-TAT-GGACTGACTTGCCTTGAATGTACtg
gi|15 : CTTAAACATACTTAAAATAACCAA-A-CAT-GGGCTGACTTGTCTTAAATGTcacatac
gi|16 : cttggtaaaAACTCTAAAATAAACTTAAAATAACAAA-A-TAT-GGAGTGACTTGTCTTAAATGTAg
gi|2 : aACGCTTAAAATAACAAA-A-TAT-GGA-------------------CTGAC------CTAAC------TTA--ACGGTACTGACCCCATACTGA-CAT-GG--T-CTTA-AAAGACCGTCAATACCGTATA-AGGTATTA-TAGTATGGTCTTATAAGACCGTAAATGGTATTATA--A-----TACCTCCCC--------------AAA--A---GG-TCTTATAAGTAATTTTACAGTATAGTGACATGCCTCTGTTCCA
gi|3 : ataaACGCTGAAAATAACAAA-A-TAT-GGACT----TGCCGTAAATGTACTGACTCTATACTGATTTGGTGTTACTACG-TACTAACTACATACTGA-A-T-AGTTTACT-----T---CACTAGC------TGCAGTTA-TACAAGTCCA-TCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACC--CCCACCCCACCCCTCAAAAA--ATA-GG-TCTTACAAGTACTTTTGCAATAGACTAATAACCCTTTGTTCCActgaggaaccccgtcgctacggaatggctttaccatggtgatttaccgcagaatagtgatataattcctcctgcaagactatgttttatgtttata
gi|4 : ttaattcaTCACTAGTAACTCTGAAACATACTTTAAATAATAAA-A-TTT-GGGCTG-CTTGTCTTACATGTACTGACGTCATGCTGACACAGCCTTACAACC-AACTGACTGTATACAAA-C-T-GGGTTACGGA-AATG--TGCTGAC------TG-AGTTATCAATATTCAG-TCTTTTAAAACCATAAAT-ATACTATT--A-----TACC--CCCTAATT---------AAA--AC--AGCTTTTACACGTACTATAACAGTGGAGCGATACACCTTTATTCCAccgccgaaacatatgcctacatgtttacattaccgcagagatttcatagtg
gi|5 : caTCACTAGGAACTCTAAAA-ATGCTGGAAACAAAAAT-A-TAC-TAACTGACTTGCCTTCAATGTGCTTACTCCATACTGACACAGTCTTACTACA-TACTGCCTACATACTGA-C-T-GTGGTACTGA-AATG--CGCTGAC------AC-AGGTATTACAAGTCCA-TTTTATAAGACCGTAAAGGGTATTATA--A-----TACC--CCC--------------AAA--ATACAT-TATTACAAGTACTTTTACAGTAGACTGATAAGCCTCTGATCCActgctga
gi|7 : CGCTGAAAATGATAAT-A-CATTGGAGTGATTTGCCTTATATATGCTGACTCTATACTGACATAGTCTTACTACG-TACTTACTACATACTGA-C-T-GGGGTACTAG-ACTA--CGCTGAC------AT-AGGTATTACGAGTCCA-TCTTATAAGACCGTAAATAGTATTATA--A-----TACT--CCC--------------AAAACAT--GG-TCATACAAGTACTTTTACAG
gi|8 : ttacCACTAGGAACTCTGAAACACTCTTAAAATG-CAAATACTAT-GGATTGATTTGCCTAAGGTGTACTGACTCTATACTGACACGGTCTTAGTATG-TACTGACTACTTACTGA-C-T-GGGGCACTAA-AATG--TGCTGAC------TG-GGGTATAACTAGTCCG-TACCATCAGACCATTAACAGTATTGAA--A-----TCCC--CCaa
gi|9 : aAACGCTGAAACACATTTAAAATAACAAA-A-TAT-GGACTAACTTGTCCAACATGTACAGATTCCATATTGTTATAGTGTTACTCCG-TACTGACTATATACTGT-C-T-GGAGTACTGA-CATC--CGCTGAC------AT-AGGTTTTACTAGACTG-TCTTATA--------------ATTATA--A-----TACC--ttaccca
blockSeqs : T T C T T G G A C G C GAC ACCGTATA T G G GA CC ACCCC TC ACCCCACCCCTCAAAAAATAGG A
blockSeqs : A . . . C . . . . A . G TGC T . A TG . . . TAATTAAAACAGC T
blockSeqs : C . . . T . . . . T . G GG A . A AG . . . AAAATACAT T
blockSeqs : T . . . T . . . . G . G TG T . A GG . . . AAAACATGG T
blockSeqs : C . . . G . . . . G . G TG A . A TA . . . AAAAGG T
blockSeqs : C . . . T . . . . G . A AC G . A CA . . . GAA T
blockSeqs : C . . . T . . . . G . G AT T . T T . . .
blockSeqs : . . . . T . . . . A . C TG T . . . . . .
blockSeqs : . . . T . . . . . . . AT
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
finalCons : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGATAAGCCTCTGTTTGCACAACTATCCAAACACCTAGTAACATATCAGCTTCACCGATGTGACTTACCGCAGACTTATATCAAATTTCACCATAGCATTTTCTTTGAAAAGACTTGGAAAAAATGTCTGGATTTAATAAGGGTCGTATCAAAATACAAGTGATGATAATCTCATATTACATGTATCAGTTATTTATTATATTTGTTCTTAATTTAA
Alignments
lowQualScore : 111111111 11 11111 55555555555555555555555555
lowQualScore : 3 3 3 3 4 0 3 3 3 3 2 0 4 777 555555555 1 4 1 22 66 11111 66 44444444444444444444444444 1
lowQualScore : . . . . . . . . . . . . . ... ......... . . . .. .. ..... .. .......................... .
lowQualScore : 7 1 1 1 4 4 3 6 6 6 3 7 0 111 888888888 1 4 1 99 11 11111 11 99999999999999999999999999 7
consensus : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
Reference ( family-1916 ) : TCACTAGGAACTCTGAAACACGCTTAAAATAACAAA-A-TAT-GGACTGACTTGCCTTAAATGTACTGACTCCATACTGACACGGTCTTACTACG-TACTGACTACATACTGA-C-T-GGGGTACTGA-AATG--CGCTGAC------TG-AGGTATTACTAGTCCG-TCTTATAAGACCGTAAACGGTATTATA--A-----TACC--CCC--------------AAA--AT--GG-TCTTACAAGTACTTTTACAGTAGAGTGATAAGCCTCTGTTCCA
gi|1 : AATGTACAGTCGCAATACTGGCATGAT-TTACTGCG-TATTTACTACATACTGA-A-T-TTAGTGCTGA-TACT--CGCTAGC------TG-AGGTATTACCAGTCCG-TCTAATAAAAGCGATAACTGTATTATA--A-----TAGG--TTC--------------AAACTAT--GG-TCTTGGAAATAC-ATTACAGTAGAGTGACAAGCCTCTGTTCC
gi|10 : AAAAAA-A-TCT---ACCGAATTGCCTTAAATACACTAAC--CA-----ATATGGTCTAACTATG-TACTG-------ACTGAGC-TCGAGGTACTGACAATG--TGATTAT------GG-AGACGTCACT--------------AGACCTTGAAGAGTATTATA--A-----TAGC--GAC--------------GAA-----------CTAAAAGTACATTTACAGTAGAGTGTTAAGCcctgctgcaacacgtagcaacactgttacagactacatttaccaatgtgactgcatactaatatcaactctttggttgcttcatatactttattttaataattcgttgaatcaatgtctgaatttcataagtgttgtatcacaatacatcgcataaagttgttgataatttcacattttcatttatttatcaattaatttaaa
gi|11 : CACTTAGAACAC--AAATACACTTAAAATAGCAAA-G-TAT-TGACCGACTTGCATTCACTGTACTGATTCCATACTGACACGGTCTTTCTTCG-TAC--A--ATATACTAC-C-T-GGAGTACTGA-AATG--CGCTGAC------TG-AGGT
gi|12 : taTAGGAACTCTGAAATACGCTTAAAACAACAAT-A-TAT-GGACTGACTTGCCTTAAACGTATTGATCTCATACTTACACGCTCTTACTGCA-TACTGACTACActaataaatacatt
gi|13 : TGCCTTAAATGTGCTTACTCCATACTGACACAGCCTTACTACG-TGCTGACAATATACT-A-C-T-
gi|14 : tcAAGTCCGAAAAGCG-TGAAAATTACAAC-A-TAT-GGACTGACTTGCCTTGAATGTACtg
gi|15 : CTTAAACATACTTAAAATAACCAA-A-CAT-GGGCTGACTTGTCTTAAATGTcacatac
gi|16 : cttggtaaaAACTCTAAAATAAACTTAAAATAACAAA-A-TAT-GGAGTGACTTGTCTTAAATGTAg
gi|2 : aACGCTTAAAATAACAAA-A-TAT-GGA-------------------CTGAC------CTAAC------TTA--ACGGTACTGACCCCATACTGA-CAT-GG--T-CTTA-AAAGACCGTCAATACCGTATA-AGGTATTA-TAGTATGGTCTTATAAGACCGTAAATGGTATTATA--A-----TACCTCCCC--------------AAA--A---GG-TCTTATAAGTAATTTTACAGTATAGTGACATGCCTCTGTTCCA
gi|3 : ataaACGCTGAAAATAACAAA-A-TAT-GGACT----TGCCGTAAATGTACTGACTCTATACTGATTTGGTGTTACTACG-TACTAACTACATACTGA-A-T-AGTTTACT-----T---CACTAGC------TGCAGTTA-TACAAGTCCA-TCTTATAAAACTGTAAAAGGTATAATACCAACCCCCACC--CCCACCCCACCCCTCAAAAA--ATA-GG-TCTTACAAGTACTTTTGCAATAGACTAATAACCCTTTGTTCCActgaggaaccccgtcgctacggaatggctttaccatggtgatttaccgcagaatagtgatataattcctcctgcaagactatgttttatgtttata
gi|4 : ttaattcaTCACTAGTAACTCTGAAACATACTTTAAATAATAAA-A-TTT-GGGCTG-CTTGTCTTACATGTACTGACGTCATGCTGACACAGCCTTACAACC-AACTGACTGTATACAAA-C-T-GGGTTACGGA-AATG--TGCTGAC------TG-AGTTATCAATATTCAG-TCTTTTAAAACCATAAAT-ATACTATT--A-----TACC--CCCTAATT---------AAA--AC--AGCTTTTACACGTACTATAACAGTGGAGCGATACACCTTTATTCCAccgccgaaacatatgcctacatgtttacattaccgcagagatttcatagtg
gi|5 : caTCACTAGGAACTCTAAAA-ATGCTGGAAACAAAAAT-A-TAC-TAACTGACTTGCCTTCAATGTGCTTACTCCATACTGACACAGTCTTACTACA-TACTGCCTACATACTGA-C-T-GTGGTACTGA-AATG--CGCTGAC------AC-AGGTATTACAAGTCCA-TTTTATAAGACCGTAAAGGGTATTATA--A-----TACC--CCC--------------AAA--ATACAT-TATTACAAGTACTTTTACAGTAGACTGATAAGCCTCTGATCCActgctga
gi|7 : CGCTGAAAATGATAAT-A-CATTGGAGTGATTTGCCTTATATATGCTGACTCTATACTGACATAGTCTTACTACG-TACTTACTACATACTGA-C-T-GGGGTACTAG-ACTA--CGCTGAC------AT-AGGTATTACGAGTCCA-TCTTATAAGACCGTAAATAGTATTATA--A-----TACT--CCC--------------AAAACAT--GG-TCATACAAGTACTTTTACAG
gi|8 : ttacCACTAGGAACTCTGAAACACTCTTAAAATG-CAAATACTAT-GGATTGATTTGCCTAAGGTGTACTGACTCTATACTGACACGGTCTTAGTATG-TACTGACTACTTACTGA-C-T-GGGGCACTAA-AATG--TGCTGAC------TG-GGGTATAACTAGTCCG-TACCATCAGACCATTAACAGTATTGAA--A-----TCCC--CCaa
gi|9 : aAACGCTGAAACACATTTAAAATAACAAA-A-TAT-GGACTAACTTGTCCAACATGTACAGATTCCATATTGTTATAGTGTTACTCCG-TACTGACTATATACTGT-C-T-GGAGTACTGA-CATC--CGCTGAC------AT-AGGTTTTACTAGACTG-TCTTATA--------------ATTATA--A-----TACC--ttaccca
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): GTGATAAGCCTCTGTTTGCACAACTATCCAAACACCTAGTAACATATCAGCTTCACCGATGTGACTTACCGCAGACTTATATCAAATTTCACCATAGCATTTTCTTTGAAAAGACTTGGAAAAAATGTCTGGATTTAATAAGGGTCGTATCAAAATACAAGTGATGATAATCTCATATTACATGTATCAGTTATTTATTATATTTGTTCTTAATTTAA