lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111 1111111111111111111111111
lowQualScore : 1 111 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 22222222 222 222 3333333333 11 22 1 1 66666666666666666666666666 1 6666666666666666666666666 111 11 1 1111 1 1 222222 333333 11 11 777777777777 33333 1 5555555555555555555555 11111111 55555555555555555555555555 1111 222222222 4444444 111111 66666666666666666666666 1 111111 111 6666666666666666666666666666666666666666666666666666666666 4444444444 11 222222222222 11111111111 333333 5555555555 1 222222 1 1 222222222222222 111111111 33333333333 11 22 11111 11111111 1 5555555555555555555555555 1 11111 33333333333333 22222 111 11111
lowQualScore : 6 5 0 3 111 3 3 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 8 44444444 0 1 222 444 8 9 6666666666 33 6 77 0 3 2 3 3 2 0 77777777777777777777777777 2 6 1 4444444444444444444444444 1 444 00 0 1 8 7777 2 7 1 000000 8 777777 0 2 8 99 44 99 222222222222 999 6 55555 3 6 4 5 0000000000000000000000 8 999 1 0 22222222 99999999999999999999999999 7777 111111111 7 1 5555555 1 999999 0 1 55555555555555555555555 1 0 777777 444 2222222222222222222222222222222222222222222222222222222222 5555555555 22 4 777 4 222222222222 77777777777 111111 66 7777777777 3 5 5 55 333333 8 55 55 55 4 4 777 1 666 1 44 2 5 1 4 0 8 777777777777777 666666666 2 1 4 0 66666666666 4 00 0 8888 4 0 7 4 55 2 11111 0 66666666 3 8 3333333333333333333333333 3 77 2 3 55 777 44444 77777777777777 0 8 22222 3 333 11 66666 0
lowQualScore : . . . . ... . . .................................................................................................... . . ........ . . ... ... . . .......... .. . .. . . . . . . . .......................... . . . ......................... . ... .. . . . .... . . . ...... . ...... . . . .. .. .. ............ ... . ..... . . . . ...................... . ... . . ........ .......................... .... ......... . . ....... . ...... . . ....................... . . ...... ... .......................................................... .......... .. . ... . ............ ........... ...... .. .......... . . . .. ...... . .. .. .. . . ... . ... . .. . . . . . . ............... ......... . . . . ........... . .. . .... . . . . .. . ..... . ........ . . ......................... . .. . . .. ... ..... .............. . . ..... . ... .. ..... .
lowQualScore : 0 0 8 5 777 3 0 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 8 22222222 8 0 888 444 0 0 0000000000 88 0 00 8 2 2 2 2 2 8 66666666666666666666666666 0 7 0 4444444444444444444444444 4 000 88 8 8 0 0000 2 0 4 888888 0 888888 8 2 0 22 22 22 444444444444 333 7 33333 5 2 4 0 6666666666666666666666 0 222 4 6 77777777 00000000000000000000000000 8888 000000000 8 0 5555555 8 222222 3 7 88888888888888888888888 7 5 777777 000 8888888888888888888888888888888888888888888888888888888888 3333333333 22 4 888 4 888888888888 77777777777 777777 99 0000000000 3 7 7 22 333333 0 55 55 55 0 0 888 6 000 8 00 6 7 4 1 3 0 555555555555555 000000000 6 2 4 3 00000000000 4 11 9 8888 6 9 0 3 00 1 22222 2 77777777 3 8 9999999999999999999999999 5 11 7 0 55 000 77777 44444444444444 3 0 66666 9 888 99 11111 4
consensus : TTCAAACTATCAAATTCTGGTTCAAAGTGGCATA---TTTTACTGTCG------AAATC-GTGCATTTT--T------------------AA-ATA-CAT------CT-G---GTCN-------------TCAAATACATGCACGATATATCAAATACCTATTATCTTN-ATGTGTGTTTTGTAGAGATATTC--TTGTACAAAATTTGTATTC-TGCAACCTGTTACTAT--T-TCA--TTGTT-AACCCTTTGATATAGATGCGAATCGACGAACCTCANTTTCA-ATCGCA----AACTCC--ATTTTCCAC-ATC---A-GGATGTTGATT-TTC-GTGTAGAAGGTC---AAA-TCCCAAAA-TAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAATA-GGGTCGAAC--GTGATCANCGAGGTCAGGCGAATCATG--A---CGCATCT-AAAGT-GCT-GG-AATTTCCCCGACNTTGNGCGGGAATCTAAC--------AAAAGAAAAG-TCAAA-TGCCGTTTTCTGAAAATCAAAGCA-TCTA--------T--------T-------TTT-GGAAATATA------CATCCTGTGTGA-GTAGGAGTAA------TAAATTATTTGA----------TA-GT-------GATTACTACAC-----GCGTTTCTT---GGGGCCGAA---CTT-AGTGTGTGATACTT----TTG----AT-G------------GT--CATAAAATTATGAAATAA---AA-N-TGCCG--A-TCA---CAGTTTATTTT-CGTGAA------------TAATT------A----AA------TAAG--TANNT-TGATN-AAT-TAATT-AGTTCAATT-AAAA--ANT-CAA-A--CA--C--AC-T-TATAANTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATCA-------------C-ACC---------TAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGT-GAAA-A-CACCTTTTTC--GTATTATCGAGTCGCAAAACTGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG------A-G-T---TTT-TCGAACTATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTA----TAGGGAATAATTTCGGGACTG--ACC------TAGTATTTCGGACCACCG--CAAATTTCGTACCACCGCGTTTCGTA----CCAACGCAAAATCA
Reference ( gi|2 ) : TTTAAACTATCCAATTCTGGTTCAAAGTAGCATA---TTTCACTGTTG------GTTTC-CTGCATTTT--T------------------GA-----CAT------CT-G---GTTA-------------TCAAATACAT-------ATATCAAATATCTATTATTTTA-ATGTGTGTTTTGTAGAGATATTC--ATGTACAAAATTTGTTATC-TGCAACCTTTTA--AT--C-TCA--TTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTCA-ATCGCA----GACTCCCAATTTTCGAC-ATC---A-TGACGTTGAGT-TTT-GTTCAGAAGATC---AAA-CCCCAATA-TAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAATA-GGGTCAAAC--ATGATCAGAAAGGCAAGGCGAATCATG-AATCTCGCATTT-AAAGT-GC--GA-AATTTCCCTGACTTTGTGAGGGAATCTAAC--------AAAAGAAAAGCTCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------T-------TTC-AGAAATGCA------CATCCTATGTGGCTCGGGAGTAA------TAAATTATTTGG----------CA-GT-------GATTGCTACAC-----ACGTTTCTT---GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATTG------------GT-TCATTAAATTATGAAATAA---AA-G-TGCCG--A-TCA---CAGTTTATTTT-CGTGAA------------TAATT------A----AA------TAAG--TATTTCTAATA-AAT-TAATT-AGTTCAATT-AAAA--GTT-CAA-A--CA--C--AC-T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATCA-------------T-ACC---------TAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGT-CAGA-A-CACCTTTTTT--GTATTATCGGGTTACAAATTTGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTG--TT--GTGTTTTTTTTTTCGAAGTATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTA----CAGGGAGTAATTTCGGGATTA--ATC------TAGTATTTCGAATCACCG--AATATTTCATACCACCTCGTTTTATA----TCAATGCAAAATCA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATA---TTTTAATGTCA------AAATT-GTGCATTTTTAT------------------AA-----CATATCTCGCT-G---GTGG-------------TGAGATATTT-------TCTTCAAATA
gi|1 : tttctcaaactatcgtgattAACTATCAAAT-CTGGTTCAAAGTGGCATAATCCTGCAATTTTAAGATATGTCTCGCTG-----T--T------------------GA-----CAT------CT-G---CTCT-------------TCAAATA-------------TCAAATACCTATTATCTTT-ATATGTGTTTTGTAGAGAAATTC--TTGTGCAAAATTTGTATTC-TGCAACCTGTAA--ATATC-TCA--TTGTC-AAC-CGTTG-----GATATAGAC--ACAAATC--AATCT--------------ACTTC--ATTTTCAAT-AGC---A-AAA----------TT-ATC----ACACCCCAAAA-TCCCAAAA-TAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAAAA-CGGTCAAAC--ACGAACAGTGAGGTCAG-------ATG-CATTGCGCATCT-AAAGT-GC--TAGAATTTCCCCGACTTTGAGCAGGAACCTAAC--------AAAAGAAAAGGTCAAAATACCATTTTAGGAATATT-------TTTG--------TG-------T-------TTCTGGAAATATA------CATCCTTT--------------A------TAAATCATTTGA----------TGTGTTTAGACAGATTCCTACACTAGACACGTTTCTT---GGGGCTGA----ACT-ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGTCATAAAATTATGAAATAA---A--G-T-CTGGCA-TCA---CAGTTTATTTTTCGTGAA------------TAATTCAAATTA----AA------TAAG--TAGATCTAATT-AAT-TAGTTCAATTCAAGT-AAAA---TA-CACTA--CA--C--AC-T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTAAAT------GTACAATAAATGTCATCG-GATTATCA-------------C-ACG---------TAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTG---AGA-A-AACTTTTTTTCCGCATT-----GTTACAAAACTGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG-----------AATTTAATCAAACTATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTA----TATGGTGCAACTTTGGAA-------C------TAGTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTA----CCAACGCAAAATCAgtgaaattaaaacagtcaaatatacacttattattccat
gi|12 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggAACTATCAAATTCTGGTTCAAACTGGCATA---TTTTACTGTCG------AAATC-GGGCATTTT--TATGATAAAGCTCGCTGTTGA-----CAT------CT-G---TTCA-------------TCAAATACATGCACATTATATAAAATTACTATTATCTGT-ATGTGTGTTTTGTTGATATATTC--TTGCACAAAATATG-TATTATGCAACCTc
gi|8 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCGAATTCCGATTCAAAA-AGCATA---TTTTACTGTCG------AAATT-GAGCATTTT--T------------------AAGATAATAT------CT-AACTGTTT-------------TCAAATACATGCATGATATATTTAATACCTATT-TCTTA----TATGCTT----AAGATATTTTTATGCATACAATTTGTATTC-TGCAACCTTT-A--AT--TATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCATTTCCA-ATCGCA----AACTCT--GTTTTCAACAATC---G--AATGTTGATT-TTC-GCGCAGAAGGTC---AAA-TCACAAAA-TAAAAGTACACATTGCA----CCATat
gi|9 : tttgttttagaaccattgcgatattAATTCTGGTTTAAAGTGGCACA---TTTTACTGTCG------CAATT-GTGCATTCT--T------------------AAAATA-TAT------CTCGCT-GTTAACATATATGTTCTTCAAATACATGCATGATATATCAAATACCTATT-TTCTATTTGTGTGTTTTGTAGAGATATTC--TTGTACAAAATTTGTATTC-TGCAACCCGTTATTAT--T-TCA--TTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTC-ATTTAATATCACACTTTAACTCC--ATTTTCCAC-
gi|13 : gatttcgcgttgattcgaaatccatgagactgtgacttttttccagctatcgcgattttgTCAAAGTGGCATA---TTTTACTGT
gi|25 : GTGTATTTTGTAAAGATATTC--TTGTATAAAATTTGTATTC-TGCAACCGGTTACTAT--T-GCA--TTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTCA-ATCACA----caaataaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|3 : ATCAACTAAACTCA---TTA-A-----------CTCC--ATTTTCCAC-ATC---T-GGATTTTGATT-TTTCGTGTAAAAGGTC---AAA-TCCCAAAA-TAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAATA-GGATCAAAC--ATGGTCATCGAGGTCAGGCGAA--ATG------CGCATCT-AAAGT-GCT-GG-TATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTG--------T--------TGTGTTTTTTT-TTTAATATA------CATCCAGTGTGATGAATGAGTAA------TGAACTATTTGA----------T--GT-------GATT-TTATAT-----GCGTTTCTT---GAGGCCAAA---CTT---T-TGTGTTACTT----TTG----AT-G------------GT--CATAAAATTATGA---------------CCG--A-TTG---CAGTTTATTTT-TGTGAA------------TAATTC-----AAATTAA------TAAG--TA-----GATGTAAT-TAATT-AGTTAAATT-AAAA----T-CAA-A--TA--C--ACTT-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATCA-------------C-ACC---------TACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGT-GAAA-A-CACCTTTTTC--GTATT-TCGAGGCACAAAACTATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG---A--ATG-------TTTCAAAATATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|18 : A----AACTTC--ATTTTCCAC-GAC---A-GGAAGTTT-GTATTT-GTGTAAAATAAC---ATTTCCCC--TAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACATACCGGTCAATC--GTGATCA
gi|16 : cgcccatgtatttctatctcaaaaataacacacatATTTTCCAC-ATCCAGACTGATGCTGA---TTC-GTGTAGACGGTC---AAA-TCTCAAAA-TAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGATA-GGGTTGAAC--ATGATTAATGATGTGAGGTGAATCAT--------GCATCT-AAAGG-GCT-GG-AATTTCCCTGagcgaggtcattgca
gi|7 : tcaattaatgttatttaccATTTT------TA-AAAA--------AA--ATAAATA-GCGCCCAACCAGTTATCATCAAGGTCACGCGAATCAAGCAA----GTATT-----GTTAT--GG-CATTTCCCCGATTCAGAGCGAAAATGTAAC--------AAAAGAAAA--T--AA-TTTTGTGTTTT--------------TTTT--------T--------T-------TTT-A---ATAAA------CATCCTGTATA--TCGT-AGTGACGTTTATAAATTATTTGA----------TA--C-------GA--GTT-TAC-----ACGTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATAC--------A----AAGG------------GT-T-ATACAATTATGAAATAA------T-TGCCG--A-ACA---TAGGTTATTTT-CGTGAA------------TAACT------A----AA------CAGGGATATTgagtcttt
gi|20 : tcgtaaatcatAAC--ATGATCAGAAAGGTCAGGCGAATC----------GCGTTCCAAAGT-GCT-GG-AATTTCCCCGACACTGTGCGGGAATCTAA-----------AAGA-----TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA--------TTTTTGTAAT-------TTT-GGAAGTATA------CATTCTGTGAGACGTAGGAGTTA------TAAGTTATTTGatagtggtcaaaatat
gi|13 : TA-AATCGTGCATCT-AAAGT-GCTTGT-A-TTCCCCCGAAATTGCACGGGAATCTAAC--------GAA--------------TGCCATTTTCTGAAAATGAAAGCAATCTATTTTTGTGT--------T-------TTT-GGAAATATA------CATCCTGTGTGAAGTGGGAGTAA------TGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTa
gi|4 : tcaaagtggcatattttactgtcaaataaataaaaacaaggatctaatatcatcatttagttcaggAATCAAAGCAATTTA--------T--------T-------TTT-GGAAATACATGTATTCATCATGTGTGATGTAGGAGTAA------TTA-TGATTTGA----------T--GT-------GTTTACTACCC-----GCATTTTTT---CGGACCCA----------------A-ACTA----TT------TTG----------------TAT--AATTATGAAATAA---AA-TCTTCCA--AATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAAA-------A----AA------TAAG--TACCTGT--TA-AATCTAATA-AGTT-AA---AAAA--GTCACAT-A--CA--C--AT-T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATAA-------------C-ACC---------TAACTATGTCCACGACA-TTGTTGATCTGAA-------------A-A-CACCTTTTTC--AGATTATCCAGTCACAAAACTGTGAAAATGTCCATCT-GGGGTCCA--------AA-TTAT---TTTGTAAAATT------------TAATTTTTCTAACTATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTA----TAGGGAATAATTTTGGAACTG--ACC------TAGTATTTCGAACTACCG--CAAATTTCGTACCACGGTGTTCCATACTAGTAAATGCAAAATC
gi|29 : TTTGA----------CA-GT-------GATTATAACAT-----GCATTTCTA---CGGGCAGAA---CT---GTTTGT--TACCT----TTG--------------------------TCAA-----GAAATAA------T-TGCTA--A-TC----CAGTTTATTTT-TGTGAA------------CAATT------A----AA------gc
gi|19 : TGTGATACTT----TTC----AT-G------------GT-ATATTTGA--ATGGAATGA---AA-G-T-CTGTGA-TCA---ATGTTTATGAT-GG-AAA------------TAATT------A----AAATCAAATACG--TAGATGTTATT-AAT-TAATA-AGTTCAATA-GAAA--AGT-CAA-A--TA--C--GC-TATATAATTTCATAGTTGGTA
gi|6 : AGATTATAAAATATGGTAA-C-TGCCG--A-TCA---CAGTTCATTTT-TGTTAA------------TAAAG------A----AAAT----TAAA--TAATT-------AAT-TAATT-GGTCCAATT-AAAA--AGT-GAA-ATACA--C--AC-T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATCA-------------T-ACC---------TTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGT-AAAA-A-CACTTTTTTC--ATATTATGGAGTCACAAAACTGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTGAATTAAACGCT------------ATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTA----TAGGGAGAAGCTTCGGGACTG--ACC------TAGTA-CTCAGAGCACTG--CAAATTTCATACCAGTGTGTTTCATA----CCAGCACAAAGTCAaatgtccctctggggatcagataattatttcatgcaa
gi|33 : ATTATGAAACAT---C----TGCCT--A-TCA---CAGTTTATTTT-TGTGAA------------TAATT------A----AA------CAAG--ctg
gi|5 : TTATGAAATAA---AATA-TTCTG--A-TCA---CAGTTTATTTT-CGTAAA------------TAATT------A----AAATTAAATAAG--CAC--CCGGTA-GATCTAATT-AATTCAATTTAAAA--GTT-GAATA--CA--C--AT-T-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACA---ATTGTCATTGCGATTATCA-------------C-ACC---------TAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGT-GAAA-AACAGTTTGTTC--CTATTACCAAGTCACAAAACTG--AAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATT----T--A-ATTTTTTTTATC----TTTTGAAATTCAT-----C-AA-TCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGACTG--ACG------TAGTATTTCGAACTACCG--TAAATTTTGTACCAACTCGTTTTGTA----CTAACGCAAAATCgacatattggccaaagtata
gi|14 : -AGTT-AATA-AAAC--AAT-CAA-A--CA--T--AA-T-TGTAAATCCATAATTGCTAAGCCAGTCATCA-----------ATATTTACATGTAAAATAATTGTTATTATGATTGTCA-------------C-ACC---------TAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAGGAAT----A-A--ATGTTTTTT--ATATTATTGAGTCGAAAA-CTGTGAA----------------------------AA-TAATCATTTCGTACGATTG--
gi|11 : TCAATT-AAAA--AGT-CAA-A--CA--CACAC-T-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----TACATGTAC---TA---TAATTATCATTGAGATTATCACAACAAACTAATTT-ACC---------TAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTGAAGA-A-CACCTTTTTC--ATATTATTGAATCGCAAAAC--TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--aactttttaagccataggattttgtacaaacgcaaaatca
gi|15 : gTTAATA-AAAC--AAT-CAA-A--CA--T--AA-T-TGTAAATCCATAATTGCTAAGCCAGTCATCA-----------ATATTTACATGTAAAATAATTGTTATTATGATTGTCA-------------C-ACC---------TAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAGGAAT----A-A--ATGTTTTTT--ATATTATTGAGTCGAAAA-CTGTGAA----------------------------AA-TAATCATTTCGTACGATTG--aatacctcaaaccactgaatttcat
gi|23 : gAATT-AAAACAGT--CAA-A--TATAC--AC-T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATCA-------------C-ACC---------TAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGaactttttaagccataggattttgtacaaacgcaaaatca
gi|10 : gtgaTACATGTACATGTACAATAAGTATAATCGCGATTATTC-------------TGACTAATTTAATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGT-GAAACA-TATCTTTATC--GTATTCTCGAGCCTCAAACCTGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG----------------------AGTGTT-----TCGAACTAAC-GAGTCCAAAATGCATTG--AGT---TTA----TAGAGAAAGACATC---ATCA--G--------TAGTATATCGGACAAACG--CACATTTCTTACCACCGCGTTTcg
gi|22 : taatAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCA--TTG---AAT----------GTTT-------CGAACTTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAA----TAGGGAATAATTTCGGGACTG--ACA------GAGTATTccataaacactga
gi|19 : aataaaaacacatttattaaaagtaAAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAgccac
gi|24 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--AT----------TTTTTCGAACTATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCA----TAGGTAGTAATTTCAGTACTG--GCC------TAGTATTT
gi|28 : ACTAGCCGAGT-TAAA---TATTC--ATT---GT---------GAATA-----GGGAATA--A----------GTATTTCAGACCACCA--CAAATTTCGTGACACTGCATTTCGTA----CCAACAC-AAATCA
gi|27 : AGTGCAATG--AGT---GTA----TAGGGAATAATTTCAGGACTGGCATT------TAATGTTATGCAGCACTG--CAAATTTCAAACTGCTGCGTTTTGTA----CCAGTGCAAAATctgttat
gi|30 : AGAGAATAATTTTGAGACTG--A-CATATGATAGAATTTCGAACCACCG--CAAGTGTAGTACCAACACATTTCATA----ACAATGTAATATCaac
gi|26 : tt------TAATATTTCGAACCATCG--CAAATTTCGTTCTATCACGTTCTGTA----CCAACGCAAAATCA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AACTTTAATATAGTTACATATATTCGCATGGGATCCAAATCCACTGGACCCTAATATTTTTAATCGTACCATCATGATTTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATATACCTCGCTGTTGACATGTTCTCCAAATACATGCATGTATATTGACTTATGTGTTAT
Unaligned ( gi|31 ): ATGGTATCATGATGATGCTTTTAATTTTTTTATAAAAATGGCATCCAATAGTAAAGCAGAATATATGTGATCAAGAGAAGCCATT
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|35 ): GCAAATTTCATACGACCACGTTACGTACAGACGCAAAATCACTG
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111
lowQualScore : 00000000000000000000000000000000000000000000000000000000000 11111 1 22222222222222222 111111 111 1111 11111 333333333 11111 3333333333 333333333333333333333 22222222 111111 333333333 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 22222222 222222222222 11111111 2222222 111 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 77777777777777777777777777777777777777777777777777777777777 1 99999 6 888 6 6 1 1 1 1 8 1 9 5 2 66666666666666666 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 7 4 666 4 77 1 888888888 0 1 1 1 66666 7777777777 6 33 33 888888888888888888888 00000000 3 666666 111111111 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 55555555 55 0 4 777 4 000000000000 2 8 88888888 66 0000000 111 1 4 33 55 3 2 3 3 7 55 55 33 3 0 0 1 66 5 1 4 4 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 44 11111111 3 3 3 55555555 3 2 7777 1 3 55 666 7777 0 0 3 00000 88888 0 55 8888
lowQualScore : ........................................................... . ..... . ... . . . . . . . . . . . ................. .. . . ...... . . . ... .... ..... . ... . . . . ... . .. . ......... . . . . ..... .......... . .. .. ..................... ........ . ...... ......... . .. . ..................... . ..... . ................................................... .. . ... ........ .. . . ... . ............ . . ........ .. ....... ... . . .. .. . . . . . .. .. .. . . . . .. . . . . . ... ............. . . . . . . . . . ... .. .. . . . . .. ........ . . . ........ . . .... . . .. ... .... . . . ..... ..... . .. ....
lowQualScore : 99999999999999999999999999999999999999999999999999999999999 0 88888 0 000 7 7 0 4 4 0 0 4 0 2 2 00000000000000000 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 4 4 888 4 44 4 666666666 1 9 0 0 77777 0000000000 7 22 00 000000000000000000000 77777777 0 444444 111111111 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 33333333 55 7 0 000 0 555555555555 3 0 77777777 11 7777777 000 4 1 99 00 6 3 6 6 3 00 00 66 6 5 1 0 44 7 6 3 3 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 22 22222222 1 1 3 77777777 3 2 1111 4 3 00 444 7777 4 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTA-AG--A-TA--------------CATC----------TG---G----------------TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCATTTTCA-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAA-AC--GTGATC-AGCGAGGTCAGGCGAATCATG------CGCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA-------T--------TTT--------TGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AAT-T--GCCGA-TCA---CAGTTTATTTT-CGT------------GAATAATT-AAA------T-AAG--TANGT---TGAT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--AA--------T-AATCATTTCGTACAA-TTG-AA-------TTTT-TCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCAAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTA-A---A-TA--------------CATC----------TG---G----------------TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTNATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTACTATTTCATTGTT-AACCCTTTGATATAGATGCGAATCGACGAACCTCANTTTCA-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCGA-AC--GTGATC-ANCGAGGTCAGGCGAATCATG-A----CGCATCTAAAGTGCTGGAATTTCCCCGACNTTGNGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCA-TCTA-------T--------TTT--------TGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AAN-T--GCCGA-TCA---CAGTTTATTTT-CGT------------GAATAATT-AAA------T-AAG--TANNT---TGAT-N-AAT-TAATTAGTTCAATT-AA--AA-ANT-CA-A-A--CA--CAC--T-TATAANTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--AA--------T-AATCATTTCGTACAA-TTG-AG-------TTTT-TCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAATAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTA-AG--A-TA--------------TGTC----------TC---G----------------CTGTTGA-CATCTGCTCTTCAAATATCAAATACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATC----AATCT--------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAA-AC--ACGAAC-AGTGAGGTCAGATG---CATT-G----CGCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT----TT-TGTG-------T--------TTC--------TGGAAATATA------CATCCTTT-------------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AGTCT--GGC-A-TCA---CAGTTTATTTTTCGT------------GAATAATTCAAA------TTAAA--TAAGT---AGAT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-----A-ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAATTGT--CTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--AA--------TTAATCATTTTGTACAA-TTG-AA-------TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCA--AGGGATCCAGT-AAGCATTTCGTACAA-TTG-AG-------TGTT-TCGAAC----TA---------------AC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGAA--------AGACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--AG--------T-AATCATTTCGTACAA-TTG-AA-------TACC-TCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATG---A-TAAAGCTCGCTGTTGACATC----------TG---T----------------TCATCAAATACATGCACA--TTATATAAAATTACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTA-AT--ATCATC-ATTTAGTTCAGGTAAATCGTG--------CATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTA-------T--------TTTTGTGTTTTTGGAAATATA------CATCCTGTGTGAA-GT-GG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--AA--------T-AATCATTTCGTACGA-TTG-AA-------CTTT-TTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--AA--------T-AATCATTTCGTACGA-TTG-AA-------CTTT-TTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGA-AC--ATGATT-AATGATGTGAGGTGAATCAT--------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTA-AGATA-TA--------------CCTCGCTGTTGACATG---T----------------TCTCCAAATACATGCATG---TATATgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAA-TC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAG-TCTGT-GA-TCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATCAAAT-ACG--TAGATG--TTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--GA--------T-AATTATTTCATGCAA-aatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTTG-A---------------------CATC----------TG---G----------------TTATCAAATACAT---------ATATCAAATATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTCA-ATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAA-AC--ATGATC-AGAAAGGCAAGGCGAATCATG-AATCTCGCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA-------T--------TTT--------CAGAAATGCA------CATCCTATGTG-G-CTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AAG-T--GCCGA-TCA---CAGTTTATTTT-CGT------------GAATAATT-AAA------T-AAG--TATTTC--TAAT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--AA--------T-AATCAATTCGTACAA-TTGTTGTGTTTTTTTTT-TCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : A-AC--ATGATC-AGAAAGGTCAGGCGAATCG--------CGT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA-------TTTTTGTAATTT--------TGGAAGTATA------CATTCTGTGAG-ACGT-AG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATA---A-CA--------------TATC----------T
gi|22 : tttctcaaactatcgtgattTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--AA--------T-AAGCATT-----------G-AA-------TGTT-TCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATTcgctggtggtgagatattttcttcaaatagtgaaattaaaacagtcaaatatacacttattattccat
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--GA--------T-AATTATTTCATGCAA-TTG-AT-------TTTT-TCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTCA-ATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AAT-T--GCTAA-TC----CAGTTTATTTT-TGT------------GAACAATT-AAA------ctgttat
gi|3 : ATCAACTAAACTCATT---------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAA-AC--ATGGTC-ATCGAGGTCAGGCGAA--ATG------CGCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGTGTTT--------TTT--------TTTTAATATA------CATCCAGTGTG-ATGA-AT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CCGA-TTG---CAGTTTATTTT-TGT------------GAATAATTCAAA------T-TAA--TAAGT---AGATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--AA--------T-AATCATCTTGTGTAA-TTG-AA-------TGTT-TCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT--ATAT--GTGATC-AA-GAG
gi|33 : atggtATT---ATGAAACAT-----C-T--GCCTA-TCA---CAGTTTATTTT-TGT------------GAATAATT-AAA------C-AAGGACATAT---TGGC-C-AAaagccatt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAagtata
gi|4 : AATCAAAGCAATTTA-------T--------TTT--------TGGAAATACATGTATTCATCATGTGTG-ATGT-AG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AATCT--TCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA------T-AAG--TACC----TGTT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA--------------AATTATTTTGTAAAA-TTT-AA-------TTTT-TCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AATAT--TCTGA-TCA---CAGTTTATTTT-CGT------------AAATAATT-AAAAT----T-AAA--TAAGCACCCGGT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATTAA--------T-AATAATTTCCTACAATTTA-AT-------TTTT-TTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAAC-T--GCCGA-TCA---CAGTTCATTTT-TGT------------TAATAA---AGA------A-AAT--TAAAT----AAT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--AA--------T-AATCATTTTGTAAAA-TTG-AA-------TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCA-ACCAGTTATC-ATCAAGGTCACGCGAATCAAGCA----AGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA-----T--AA-TTTTGTGTTTT--------------TTTT-------T--------TTT--------T---AATAAA------CATCCTGTATATC-GT-AGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-----T-T--GCCGA-ACA---TAGGTTATTTT-CGT------------GAATAACT-AAA------C-AGG--GATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTA-AG--A-TAA-------------TATC----------TAACTG----------------TTTTCAAATACATGCATG--ATATATTTAATACCTATT-TCTTA---TATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCATTTCCA-ATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTA-A---AATA--------------TATC----------TC---GCTGTTAACATATATGTTCTTCAAATACATGCATG--ATATATCAAATACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCA-TTTAATATCACACTTTAACTCC--ATTTTCCAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 9999999999999999999999999999999999999999 11111 22222222222222 111111 111 1111 11111 222222222222 11111 3333333333 55555555555555555 111111 333333333 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 3333333333 222222222222 1111 333333333333333 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 0 1 7777777777777777777777777777777777777777 1 99999 6 888 6 6 1 1 9 1 8 1 4 66 11 33333333333333 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 666 8 33 555555555555 0 1 1 6 66666 7777777777 6 33 33 5 88888888888888888 3 666666 111111111 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 1111111111 44 777 4 000000000000 8 6666 777777777777777 0 5 3 44 6 3 3 6 44 99 22 3 1 66 5 1 4 4 0 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 55555555 3 22222222 3 3 2 7777 3 55 666 7777 1 2 0 3 00000 88888 0 55 8888
lowQualScore : . . ........................................ . ..... . ... . . . . . . . . . .. .. .............. .. . . ...... . . . ... .... ..... . ... . . ... . .. ............ . . . . ..... .......... . .. .. . ................. . ...... ......... . .. . ..................... . ..... . ................................................... .. . ... .......... .. ... . ............ . .... ............... . . . .. . . . . .. .. .. . . .. . . . . . . ... ............. . . . . . . . . . ... .. .. . . . . ........ . ........ . . . .... . .. ... .... . . . . ..... ..... . .. ....
lowQualScore : 4 7 3333333333333333333333333333333333333333 0 88888 0 000 7 7 0 4 0 0 0 4 6 22 88 22222222222222 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 888 9 88 999999999999 1 9 0 3 77777 0000000000 7 22 00 3 99999999999999999 0 444444 111111111 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 0000000000 77 000 0 555555555555 0 9999 000000000000000 0 1 3 66 7 3 3 7 66 22 55 3 5 44 7 6 3 3 5 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 44444444 1 11111111 3 3 2 1111 3 00 444 7777 8 6 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA--------------TATCTN---G----------------TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCATTT-CAATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA--------------CATCTG---G----------------TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCATTTTCAATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTAAGATA--------------TGTCTC---G----------------CTGTTGA-CATCTGCTCTTCAAATATCAAATACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATCAA----TCT-------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAAAC--ACGAAC-AGTGAGGTCAGATGCAT--TG-----C--GCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT-------TTTG--------TGT------TTCTGGAAATATA------CATCCTTT-------------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AG--TCTGGC--ATCA---CAGTTTATTTTTCGT------------GAATAATTCAAA--TTAAATAAGT---AG--AT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-A-----ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG--------AA-TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG--------AG-TGT-TTCGA-------------------ACTAAC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGA--AA------GACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--------AA-TAC-CTCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATGATAAAGCTCGCTGTTGACATCTG---T----------------TCATCAAATACATGCACA--TTATATAAAATTACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTAAT--ATCATC-ATTTAGTTCAGGTAAATC--G-----T--GCATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTATTTTTGTGT--------TTTTGGAAATATA------CATCCTGTGTGAA-GT-GG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGAAC--ATGATT-AATGATGTGAGGTGAATCAT---------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATA--------------TACCTC---GCTGTTGACATGT----TCTCCAAATACATGCATG---TATATgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAATC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAGTC-TGT--GATCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATC-AAATACGTAGATGTTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAaatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTTGA------------------CATCTG---G----------------TTATCAAATACAT---------ATATCAAATATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTCAATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAAAC--ATGATC-AGAAAGGCAAGGCGAATCATGAATCTC--GCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTCAGAAATGCA------CATCCTATGTG-G-CTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AA--G-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTATTTC--TA--AT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTGTTGTGTTTTT-TTT-TTCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : AAC--ATGATC-AGAAAGGTCAGGCGAATC--G-----C--GT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA--------TTTTTGTAATTTTGGAAGTATA------CATTCTGTGAG-ACGT-AG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATAACA--------------TATCT
gi|21 : tttctcaaactatcgtgattT-CAAATAGTGAAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATcgctggtggtgagatattttcttcaaatagtgaaattaaaacagtcaaatatacacttattattccat
gi|22 : tttctcaaactatcgtgattttcaaactaccaaattctggttcacagtgacatattttaatgtcaaaattgtgcatttttataacatatctcgctggtggtgagatattttctTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCATT----------G--------AA-TGT-TTCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATT
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--------AT-TTT-TTCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTCAATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AA--T-TGCT-AATC----CAGTTTATTTT-TGT------------GAACAATT-AAA--ctgttat
gi|3 : ATCAACTAAACTCATT--------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAAAC--ATGGTC-ATCGAGGTCAGGCGAA--ATG-----C--GCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGTGTT-T--------TTTTTTTAATATA------CATCCAGTGTG-ATGA-AT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CC-GATTG---CAGTTTATTTT-TGT------------GAATAATTCAAA--T-TAATAAGT---AG--ATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG--------AA-TGT-TTCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT-ATAT--GTGATCAAGAGAAGCCA
gi|33 : atggtATT---ATGAAACA--------TCTGCC-TATCA---CAGTTTATTTT-TGT------------GAATAATT-AAA--C-AAGtt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAgacatattggccaaagtata
gi|4 : AATCAAAGCAATTTA--------T--------TTTTGGAAATACATGTATTCATCATGTGTG-ATGT-AG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AA--TCTTCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA--T-AAGTAC-C---TG--TT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA------------AATTATTTTGTAAAATTT--------AA-TTT-TTCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AA--TATTCT-GATCA---CAGTTTATTTT-CGT------------AAATAATT-AAAATT-AAATAAGCACCCG--GT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATTT--------AATTTT-TTTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAA--C-TGCC-GATCA---CAGTTCATTTT-TGT------------TAATAAAG-AAAATT-AAATA----------AT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTG--------AA-TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCAACCAGTTATC-ATCAAGGTCACGCGAATCAAG-----CAAGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA-----T--AA-TTTTGTGTTTT--------------TTTT--------T--------TTTT---AATAAA------CATCCTGTATATC-GT-AGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-------T-TGCC-GAACA---TAGGTTATTTT-CGT------------GAATAACT-AAA--C-AGGGATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTAAGATAA-------------TATCTAACTG----------------TTTTCAAATACATGCATG--ATATATTTAATACCTATT-TCTT---ATATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCATTTCCAATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattTTGAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTAAAATA--------------TATCTC---GCTGTTAACATATATGTTCTTCAAATACATGCATG--ATATATCAAATACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCATTTAATATCACACTTTAACTCC--ATTTTCCAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 7777777777777777777777777777777777777777 11111 222222222222222222 111111 111 1111 11111 222222222222 11111 3333333333 55555555555555555 111111 333333333 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 3333333333 222222222222 1111 333333333333333 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 0 1 3333333333333333333333333333333333333333 1 99999 6 888 6 6 1 1 9 1 8 1 4 66 11 999999999999999999 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 666 8 33 555555555555 0 1 1 6 66666 7777777777 6 33 33 5 88888888888888888 3 666666 111111111 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 1111111111 44 777 4 000000000000 8 6666 777777777777777 0 5 3 44 6 3 3 6 44 99 22 3 1 66 5 1 4 4 0 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 55555555 3 22222222 3 3 2 7777 3 55 666 7777 1 2 0 3 00000 88888 0 55 8888
lowQualScore : . . ........................................ . ..... . ... . . . . . . . . . .. .. .................. .. . . ...... . . . ... .... ..... . ... . . ... . .. ............ . . . . ..... .......... . .. .. . ................. . ...... ......... . .. . ..................... . ..... . ................................................... .. . ... .......... .. ... . ............ . .... ............... . . . .. . . . . .. .. .. . . .. . . . . . . ... ............. . . . . . . . . . ... .. .. . . . . ........ . ........ . . . .... . .. ... .... . . . . ..... ..... . .. ....
lowQualScore : 4 7 6666666666666666666666666666666666666666 0 88888 0 000 7 7 0 4 0 0 0 4 6 22 88 777777777777777777 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 888 9 88 999999999999 1 9 0 3 77777 0000000000 7 22 00 3 99999999999999999 0 444444 111111111 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 0000000000 77 000 0 555555555555 0 9999 000000000000000 0 1 3 66 7 3 3 7 66 22 55 3 5 44 7 6 3 3 5 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 44444444 1 11111111 3 3 2 1111 3 00 444 7777 8 6 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA--------------TATCTC---G----------------TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA--------------TATCTN---G----------------TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTAAGATA--------------TGTCTC---G----------------CTGTTGA-CATCTGCTCTTCAAATATCAAATACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATCAA----TCT---------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAAAC--ACGAAC-AGTGAGGTCAGATGCAT--TG-----C--GCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT-------TTTG--------TGT------TTCTGGAAATATA------CATCCTTT-------------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AG--TCTGGC--ATCA---CAGTTTATTTTTCGT------------GAATAATTCAAA--TTAAATAAGT---AG--AT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-A-----ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG--------AA-TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG--------AG-TGT-TTCGA-------------------ACTAAC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGA--AA------GACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--------AA-TAC-CTCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATGATAAAGCTCGCTGTTGACATCTG---T----------------TCATCAAATACATGCACA--TTATATAAAATTACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTAAT--ATCATC-ATTTAGTTCAGGTAAATC--G-----T--GCATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTATTTTTGTGT--------TTTTGGAAATATA------CATCCTGTGTGAA-GT-GG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGAAC--ATGATT-AATGATGTGAGGTGAATCAT---------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATA--------------TACCTC---GCTGTTGACATGT----TCTCCAAATACATGCATG---TATATgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAATC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAGTC-TGT--GATCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATC-AAATACGTAGATGTTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAaatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTTGA------------------CATCTG---G----------------TTATCAAATACAT---------ATATCAAATATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTC-A-ATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAAAC--ATGATC-AGAAAGGCAAGGCGAATCATGAATCTC--GCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTCAGAAATGCA------CATCCTATGTG-G-CTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AA--G-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTATTTC--TA--AT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTGTTGTGTTTTT-TTT-TTCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : AAC--ATGATC-AGAAAGGTCAGGCGAATC--G-----C--GT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA--------TTTTTGTAATTTTGGAAGTATA------CATTCTGTGAG-ACGT-AG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATAACA--------------TATCTC---G----------------
gi|21 : tttctcaaactatcgtgattT-CAAATAGTGAAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATctggtggtgagatattttcttcaaatagtgaaattaaaacagtcaaatatacacttattattccat
gi|22 : tttctcaaactatcgtgattttcaaactaccaaattctggttcacagtgacatattttaatgtcaaaattgtgcatttttataacatatctcgctggtggtgagatattttctTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCATT----------G--------AA-TGT-TTCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATT
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--------AT-TTT-TTCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTC-A-ATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AA--T-TGCT-AATC----CAGTTTATTTT-TGT------------GAACAATT-AAA--ctgttat
gi|3 : ATCAACTAAACTCA-TT---------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAAAC--ATGGTC-ATCGAGGTCAGGCGAA--ATG-----C--GCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGTGTT-T--------TTTTTTTAATATA------CATCCAGTGTG-ATGA-AT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CC-GATTG---CAGTTTATTTT-TGT------------GAATAATTCAAA--T-TAATAAGT---AG--ATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG--------AA-TGT-TTCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT-ATAT--GTGATCAAGAGAAGCCA
gi|33 : atggtATT---ATGAAACA--------TCTGCC-TATCA---CAGTTTATTTT-TGT------------GAATAATT-AAA--C-AAGtt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAgacatattggccaaagtata
gi|4 : AATCAAAGCAATTTA--------T--------TTTTGGAAATACATGTATTCATCATGTGTG-ATGT-AG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AA--TCTTCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA--T-AAGTAC-C---TG--TT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA------------AATTATTTTGTAAAATTT--------AA-TTT-TTCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AA--TATTCT-GATCA---CAGTTTATTTT-CGT------------AAATAATT-AAAATT-AAATAAGCACCCG--GT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATTT--------AATTTT-TTTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAA--C-TGCC-GATCA---CAGTTCATTTT-TGT------------TAATAAAG-AAAATT-AAATA----------AT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTG--------AA-TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCAACCAGTTATC-ATCAAGGTCACGCGAATCAAG-----CAAGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA-----T--AA-TTTTGTGTTTT--------------TTTT--------T--------TTTT---AATAAA------CATCCTGTATATC-GT-AGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-------T-TGCC-GAACA---TAGGTTATTTT-CGT------------GAATAACT-AAA--C-AGGGATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTAAGATAA-------------TATCTAACTG----------------TTTTCAAATACATGCATG--ATATATTTAATACCTATT-TCTT---ATATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCA-TTTCCA-ATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattTTGAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTAAAATA--------------TATCTC---GCTGTTAACATATATGTTCTTCAAATACATGCATG--ATATATCAAATACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCA-TTTA-ATATCACACTTTAACTCC--ATTTTCCAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 111 0000000000000000 11111 222222222222222222 111111 111 1111 11111 222222222222 11111 3333333333 55555555555555555 111111 333333333 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 3333333333 222222222222 1111 333333333333333 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 0 1 5 000 0000000000000000 1 99999 6 888 6 6 1 1 9 1 8 1 4 66 11 999999999999999999 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 666 8 33 555555555555 0 1 1 6 66666 7777777777 6 33 33 5 88888888888888888 3 666666 111111111 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 1111111111 44 777 4 000000000000 8 6666 777777777777777 0 5 3 44 6 3 3 6 44 99 22 3 1 66 5 1 4 4 0 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 55555555 3 22222222 3 3 2 7777 3 55 666 7777 1 2 0 3 00000 88888 0 55 8888
lowQualScore : . . . ... ................ . ..... . ... . . . . . . . . . .. .. .................. .. . . ...... . . . ... .... ..... . ... . . ... . .. ............ . . . . ..... .......... . .. .. . ................. . ...... ......... . .. . ..................... . ..... . ................................................... .. . ... .......... .. ... . ............ . .... ............... . . . .. . . . . .. .. .. . . .. . . . . . . ... ............. . . . . . . . . . ... .. .. . . . . ........ . ........ . . . .... . .. ... .... . . . . ..... ..... . .. ....
lowQualScore : 4 7 7 000 7777777777777777 0 88888 0 000 7 7 0 4 0 0 0 4 6 22 88 777777777777777777 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 888 9 88 999999999999 1 9 0 3 77777 0000000000 7 22 00 3 99999999999999999 0 444444 111111111 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 0000000000 77 000 0 555555555555 0 9999 000000000000000 0 1 3 66 7 3 3 7 66 22 55 3 5 44 7 6 3 3 5 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 44444444 1 11111111 3 3 2 1111 3 00 444 7777 8 6 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCT---CGCTGTT-ACAT-T----TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCT---CG----------------TCNTCAAATACATGCACG--ATATATCAAATACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTAAGATA-TGTCT---CG----------------CTGTTGA-CATCTGCTCTTCAAATATCAAATACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATCAA----TCT---------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAAAC--ACGAAC-AGTGAGGTCAGATGCAT--TG-----C--GCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT-------TTTG--------TGT------TTCTGGAAATATA------CATCCTTT-------------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AG--TCTGGC--ATCA---CAGTTTATTTTTCGT------------GAATAATTCAAA--TTAAATAAGT---AG--AT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-A-----ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG--------AA-TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG--------AG-TGT-TTCGA-------------------ACTAAC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGA--AA------GACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--------AA-TAC-CTCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATGATA-AAGCT---CGCTGTTGACATCTGT--TCATCAAATACATGCACA--TTATATAAAATTACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTAAT--ATCATC-ATTTAGTTCAGGTAAATC--G-----T--GCATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTATTTTTGTGT--------TTTTGGAAATATA------CATCCTGTGTGAA-GT-GG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGAAC--ATGATT-AATGATGTGAGGTGAATCAT---------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATA-TACCT---CGCTGTTGACATGT----TCTCCAAATACATGCATG---TATATgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAATC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAGTC-TGT--GATCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATC-AAATACGTAGATGTTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAaatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTTGA-----CATCT---GG----------------TTATCAAATACAT---------ATATCAAATATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTC-A-ATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAAAC--ATGATC-AGAAAGGCAAGGCGAATCATGAATCTC--GCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTCAGAAATGCA------CATCCTATGTG-G-CTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AA--G-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTATTTC--TA--AT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTGTTGTGTTTTT-TTT-TTCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : AAC--ATGATC-AGAAAGGTCAGGCGAATC--G-----C--GT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA--------TTTTTGTAATTTTGGAAGTATA------CATTCTGTGAG-ACGT-AG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATAACA-TATCT---CG----------------
gi|21 : tttctcaaactatcgtgattT-CAAATAGTGAAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATctggtggtgagatattttcttcaaatagtgaaattaaaacagtcaaatatacacttattattccat
gi|22 : tttctcaaactatcgtgattttcaaactaccaaattctggttcacagtgacatattttaatgtcaaaattgtgcatttttataacatatctcgctggtggtgagatattttctTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCATT----------G--------AA-TGT-TTCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATT
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--------AT-TTT-TTCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTC-A-ATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AA--T-TGCT-AATC----CAGTTTATTTT-TGT------------GAACAATT-AAA--ctgttat
gi|3 : ATCAACTAAACTCA-TT---------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAAAC--ATGGTC-ATCGAGGTCAGGCGAA--ATG-----C--GCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGTGTT-T--------TTTTTTTAATATA------CATCCAGTGTG-ATGA-AT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CC-GATTG---CAGTTTATTTT-TGT------------GAATAATTCAAA--T-TAATAAGT---AG--ATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG--------AA-TGT-TTCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT-ATAT--GTGATCAAGAGAAGCCA
gi|33 : atggtATT---ATGAAACA--------TCTGCC-TATCA---CAGTTTATTTT-TGT------------GAATAATT-AAA--C-AAGtt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAgacatattggccaaagtata
gi|4 : AATCAAAGCAATTTA--------T--------TTTTGGAAATACATGTATTCATCATGTGTG-ATGT-AG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AA--TCTTCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA--T-AAGTAC-C---TG--TT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA------------AATTATTTTGTAAAATTT--------AA-TTT-TTCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AA--TATTCT-GATCA---CAGTTTATTTT-CGT------------AAATAATT-AAAATT-AAATAAGCACCCG--GT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATTT--------AATTTT-TTTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAA--C-TGCC-GATCA---CAGTTCATTTT-TGT------------TAATAAAG-AAAATT-AAATA----------AT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTG--------AA-TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCAACCAGTTATC-ATCAAGGTCACGCGAATCAAG-----CAAGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA-----T--AA-TTTTGTGTTTT--------------TTTT--------T--------TTTT---AATAAA------CATCCTGTATATC-GT-AGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-------T-TGCC-GAACA---TAGGTTATTTT-CGT------------GAATAACT-AAA--C-AGGGATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTAAGATAATATCTAACTG----------------TTTTCAAATACATGCATG--ATATATTTAATACCTATT-TCTT---ATATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCA-TTTCCA-ATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattTTGAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTAAAATA-TATCT---CGCTGTTAACATATATGTTCTTCAAATACATGCATG--ATATATCAAATACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCA-TTTA-ATATCACACTTTAACTCC--ATTTTCCAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 777777777777777777777777 222222 1111 222222222222222222 111111 111 1111 11111 222222222222 11111 3333333333 55555555555555555 111111 333333333 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 3333333333 222222222222 1111 333333333333333 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 0 1 5 0 999999999999999999999999 4 11 666666 5 4444 3 888 6 6 1 1 9 1 8 1 4 66 11 999999999999999999 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 666 8 33 555555555555 0 1 1 6 66666 7777777777 6 33 33 5 88888888888888888 3 666666 111111111 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 1111111111 44 777 4 000000000000 8 6666 777777777777777 1 4 33 55 3 3 3 7 55 55 33 3 0 0 0 66 5 1 4 4 0 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 55555555 3 22222222 3 3 2 7777 3 55 666 7777 1 2 0 3 00000 88888 0 55 8888
lowQualScore : . . . . ........................ . .. ...... . .... . ... . . . . . . . . . .. .. .................. .. . . ...... . . . ... .... ..... . ... . . ... . .. ............ . . . . ..... .......... . .. .. . ................. . ...... ......... . .. . ..................... . ..... . ................................................... .. . ... .......... .. ... . ............ . .... ............... . . .. .. . . . . .. .. .. . . . . .. . . . . . . ... ............. . . . . . . . . . ... .. .. . . . . ........ . ........ . . . .... . .. ... .... . . . . ..... ..... . .. ....
lowQualScore : 4 7 7 7 777777777777777777777777 3 44 000000 7 2222 5 000 7 7 0 4 0 0 0 4 6 22 88 777777777777777777 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 888 9 88 999999999999 1 9 0 3 77777 0000000000 7 22 00 3 99999999999999999 0 444444 111111111 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 0000000000 77 000 0 555555555555 0 9999 000000000000000 4 1 99 00 6 6 6 3 00 00 66 6 5 1 6 44 7 6 3 3 5 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 44444444 1 11111111 3 3 2 1111 3 00 444 7777 8 6 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTTG-----A-CA-T-----TT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT------A-CA-T-----TT---CNTCAAATACATGCA--CGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTAAGATA-TGTCTCGCTGTTG-----A-CA-T-----CTGCTCTTCAAATA----------------TCAAAT----ACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATCAA----TCT---------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAAAC--ACGAAC-AGTGAGGTCAGATGCAT--TG-----C--GCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT-------TTTG--------TGT------TTCTGGAAATATA------CATCCTTT-------------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AG--TCTGGC--ATCA---CAGTTTATTTTTCGT------------GAATAATTCAAA--TTAAATAAGT---AG--AT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-A-----ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG--------AA-TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG--------AG-TGT-TTCGA-------------------ACTAAC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGA--AA------GACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--------AA-TAC-CTCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATGATA-AAGCTCGCTGTTG-----A-CA-TCTG--TT---CATCAAATACATGCA--CATTATA-TAAAAT----TACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTAAT--ATCATC-ATTTAGTTCAGGTAAATC--G-----T--GCATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTATTTTTGTGT--------TTTTGGAAATATA------CATCCTGTGTGAA-GT-GG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGAAC--ATGATT-AATGATGTGAGGTGAATCAT---------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATA-TACCTCGCTGTTG-----A-CA-TG----TT---CTCCAAATACATGCA--TG-TATA-Tgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAATC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAGTC-TGT--GATCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATC-AAATACGTAGATGTTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAaatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTTGA-----CATCT-G--GTT------A-----------------TCAAATACAT---------ATA-TCAAAT----ATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTC-A-ATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAAAC--ATGATC-AGAAAGGCAAGGCGAATCATGAATCTC--GCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTCAGAAATGCA------CATCCTATGTG-G-CTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AA--G-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTATTTC--TA--AT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTGTTGTGTTTTT-TTT-TTCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : AAC--ATGATC-AGAAAGGTCAGGCGAATC--G-----C--GT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA--------TTTTTGTAATTTTGGAAGTATA------CATTCTGTGAG-ACGT-AG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATAACA-TATCTCGCTGGTGGTGAGA-TATT-----TT---CTTCAAATA-GTGAAATTAAAACAGTCAAATATACACTTATTAT
gi|22 : tttctcaaactatcgtgattTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCATT----------G--------AA-TGT-TTCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATTtccat
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--------AT-TTT-TTCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTC-A-ATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AA--T-TGCT-AATC----CAGTTTATTTT-TGT------------GAACAATT-AAA--ctgttat
gi|3 : ATCAACTAAACTCA-TT---------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAAAC--ATGGTC-ATCGAGGTCAGGCGAA--ATG-----C--GCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGTGTT-T--------TTTTTTTAATATA------CATCCAGTGTG-ATGA-AT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CC-GATTG---CAGTTTATTTT-TGT------------GAATAATTCAAA--T-TAATAAGT---AG--ATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG--------AA-TGT-TTCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT-ATAT--GTGATCAAGAGAAGCCA
gi|33 : atggtATT---ATGAAACA--------TCTGCC-TATCA---CAGTTTATTTT-TGT------------GAATAATT-AAA--C-AAGtt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAgacatattggccaaagtata
gi|4 : AATCAAAGCAATTTA--------T--------TTTTGGAAATACATGTATTCATCATGTGTG-ATGT-AG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AA--TCTTCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA--T-AAGTAC-C---TG--TT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA------------AATTATTTTGTAAAATTT--------AA-TTT-TTCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AA--TATTCT-GATCA---CAGTTTATTTT-CGT------------AAATAATT-AAAATT-AAATAAGCACCCG--GT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATTT--------AATTTT-TTTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAA--C-TGCC-GATCA---CAGTTCATTTT-TGT------------TAATAAAG-AAAATT-AAATA----------AT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTG--------AA-TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCAACCAGTTATC-ATCAAGGTCACGCGAATCAAG-----CAAGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA-----T--AA-TTTTGTGTTTT--------------TTTT--------T--------TTTT---AATAAA------CATCCTGTATATC-GT-AGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-------T-TGCC-GAACA---TAGGTTATTTT-CGT------------GAATAACT-AAA--C-AGGGATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTAAGATAATATCTAACTGTT-----------------------TTCAAATACATGCA--TGATATA-TTTAAT----ACCTATT-TCTT---ATATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCA-TTTCCA-ATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattTTGAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTAAAATA-TATCTCGCTGTT------AACA-TATATGTT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCA-TTTA-ATATCACACTTTAACTCC--ATTTTCCAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 555555555555555555555 111111 1111 222222222222222222 111111 111 1111 11111 222222222222 11111 3333333333 55555555555555555 111111 333333333 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 3333333333 222222222222 1111 333333333333333 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 0 1 5 0 444444444444444444444 4 11 999999 5 4444 3 888 6 6 1 1 9 1 8 1 4 66 11 999999999999999999 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 666 8 33 555555555555 0 1 1 6 66666 7777777777 6 33 33 5 88888888888888888 3 666666 111111111 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 1111111111 44 777 4 000000000000 8 6666 777777777777777 1 4 33 55 3 3 3 7 55 55 33 3 0 0 0 66 5 1 4 4 0 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 55555555 3 22222222 3 3 2 7777 3 55 666 7777 1 2 0 3 00000 88888 0 55 8888
lowQualScore : . . . . ..................... . .. ...... . .... . ... . . . . . . . . . .. .. .................. .. . . ...... . . . ... .... ..... . ... . . ... . .. ............ . . . . ..... .......... . .. .. . ................. . ...... ......... . .. . ..................... . ..... . ................................................... .. . ... .......... .. ... . ............ . .... ............... . . .. .. . . . . .. .. .. . . . . .. . . . . . . ... ............. . . . . . . . . . ... .. .. . . . . ........ . ........ . . . .... . .. ... .... . . . . ..... ..... . .. ....
lowQualScore : 4 9 7 1 000000000000000000000 3 44 777777 7 2222 5 000 7 7 0 4 0 0 0 4 6 22 88 777777777777777777 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 888 9 88 999999999999 1 9 0 3 77777 0000000000 7 22 00 3 99999999999999999 0 444444 111111111 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 0000000000 77 000 0 555555555555 0 9999 000000000000000 4 1 99 00 6 6 6 3 00 00 66 6 5 1 6 44 7 6 3 3 5 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 44444444 1 11111111 3 3 2 1111 3 00 444 7777 8 6 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT-----GACA-T-----TT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT-----GACA-T-----TT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTAAGATA-TGTCTCGCTGTT-----GACA-T-----CTGCTCTTCAAATA----------------TCAAAT----ACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATCAA----TCT---------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAAAC--ACGAAC-AGTGAGGTCAGATGCAT--TG-----C--GCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT-------TTTG--------TGT------TTCTGGAAATATA------CATCCTTT-------------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AG--TCTGGC--ATCA---CAGTTTATTTTTCGT------------GAATAATTCAAA--TTAAATAAGT---AG--AT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-A-----ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG--------AA-TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG--------AG-TGT-TTCGA-------------------ACTAAC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGA--AA------GACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--------AA-TAC-CTCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATGATA-AAGCTCGCTGTT-----GACA-TCTG--TT---CATCAAATACATGCA--CATTATA-TAAAAT----TACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTAAT--ATCATC-ATTTAGTTCAGGTAAATC--G-----T--GCATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTATTTTTGTGT--------TTTTGGAAATATA------CATCCTGTGTGAA-GT-GG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGAAC--ATGATT-AATGATGTGAGGTGAATCAT---------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATA-TACCTCGCTGTT-----GACA-TG----TT---CTCCAAATACATGCA--TG-TATA-Tgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAATC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAGTC-TGT--GATCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATC-AAATACGTAGATGTTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAaatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTT--GACA-T------CTGGT-----TA----------------TCAAATACAT---------ATA-TCAAAT----ATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTC-A-ATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAAAC--ATGATC-AGAAAGGCAAGGCGAATCATGAATCTC--GCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTCAGAAATGCA------CATCCTATGTG-G-CTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AA--G-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTATTTC--TA--AT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTGTTGTGTTTTT-TTT-TTCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : AAC--ATGATC-AGAAAGGTCAGGCGAATC--G-----C--GT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA--------TTTTTGTAATTTTGGAAGTATA------CATTCTGTGAG-ACGT-AG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATAACA-TATCTCGCTGGTGGTGAGATATT-----TT---CTTCAAATA-GTGAAATTAAAACAGTCAAATATACACTTATTAT
gi|22 : tttctcaaactatcgtgattTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCATT----------G--------AA-TGT-TTCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATTtccat
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--------AT-TTT-TTCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTC-A-ATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AA--T-TGCT-AATC----CAGTTTATTTT-TGT------------GAACAATT-AAA--ctgttat
gi|3 : ATCAACTAAACTCA-TT---------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAAAC--ATGGTC-ATCGAGGTCAGGCGAA--ATG-----C--GCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGTGTT-T--------TTTTTTTAATATA------CATCCAGTGTG-ATGA-AT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CC-GATTG---CAGTTTATTTT-TGT------------GAATAATTCAAA--T-TAATAAGT---AG--ATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG--------AA-TGT-TTCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT-ATAT--GTGATCAAGAGAAGCCA
gi|33 : atggtATT---ATGAAACA--------TCTGCC-TATCA---CAGTTTATTTT-TGT------------GAATAATT-AAA--C-AAGtt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAgacatattggccaaagtata
gi|4 : AATCAAAGCAATTTA--------T--------TTTTGGAAATACATGTATTCATCATGTGTG-ATGT-AG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AA--TCTTCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA--T-AAGTAC-C---TG--TT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA------------AATTATTTTGTAAAATTT--------AA-TTT-TTCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AA--TATTCT-GATCA---CAGTTTATTTT-CGT------------AAATAATT-AAAATT-AAATAAGCACCCG--GT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATTT--------AATTTT-TTTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAA--C-TGCC-GATCA---CAGTTCATTTT-TGT------------TAATAAAG-AAAATT-AAATA----------AT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTG--------AA-TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCAACCAGTTATC-ATCAAGGTCACGCGAATCAAG-----CAAGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA-----T--AA-TTTTGTGTTTT--------------TTTT--------T--------TTTT---AATAAA------CATCCTGTATATC-GT-AGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-------T-TGCC-GAACA---TAGGTTATTTT-CGT------------GAATAACT-AAA--C-AGGGATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTAAGATAATATCTAACTGTT----------------------TTCAAATACATGCA--TGATATA-TTTAAT----ACCTATT-TCTT---ATATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCA-TTTCCA-ATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattTTGAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTAAAATA-TATCTCGCTGTT-----AACA-TATATGTT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCA-TTTA-ATATCACACTTTAACTCC--ATTTTCCAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 555555555555555555555 111111 1111 222222222222222222 111111 111 1111 11111 222222222222 11111 3333333333 55555555555555555 111111 333333333 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 3333333333 222222222222 1111 333333333333333 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 0 1 5 0 444444444444444444444 4 11 999999 5 4444 3 888 6 6 1 1 9 1 8 1 4 66 11 999999999999999999 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 666 8 33 555555555555 0 1 1 6 66666 7777777777 6 33 33 5 88888888888888888 3 666666 111111111 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 1111111111 44 777 4 000000000000 8 6666 777777777777777 1 4 33 55 3 3 3 7 55 55 33 3 0 0 0 66 5 1 4 4 0 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 55555555 3 22222222 3 3 2 7777 3 55 666 7777 1 2 0 3 00000 88888 0 55 8888
lowQualScore : . . . . ..................... . .. ...... . .... . ... . . . . . . . . . .. .. .................. .. . . ...... . . . ... .... ..... . ... . . ... . .. ............ . . . . ..... .......... . .. .. . ................. . ...... ......... . .. . ..................... . ..... . ................................................... .. . ... .......... .. ... . ............ . .... ............... . . .. .. . . . . .. .. .. . . . . .. . . . . . . ... ............. . . . . . . . . . ... .. .. . . . . ........ . ........ . . . .... . .. ... .... . . . . ..... ..... . .. ....
lowQualScore : 4 9 7 1 000000000000000000000 3 44 777777 7 2222 5 000 7 7 0 4 0 0 0 4 6 22 88 777777777777777777 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 888 9 88 999999999999 1 9 0 3 77777 0000000000 7 22 00 3 99999999999999999 0 444444 111111111 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 0000000000 77 000 0 555555555555 0 9999 000000000000000 4 1 99 00 6 6 6 3 00 00 66 6 5 1 6 44 7 6 3 3 5 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 44444444 1 11111111 3 3 2 1111 3 00 444 7777 8 6 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT-----GACA-T-----TT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT-----GACA-T-----TT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTAAGATA-TGTCTCGCTGTT-----GACA-T-----CTGCTCTTCAAATA----------------TCAAAT----ACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATCAA----TCT---------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAAAC--ACGAAC-AGTGAGGTCAGATGCAT--TG-----C--GCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT-------TTTG--------TGT------TTCTGGAAATATA------CATCCTTT-------------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AG--TCTGGC--ATCA---CAGTTTATTTTTCGT------------GAATAATTCAAA--TTAAATAAGT---AG--AT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-A-----ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG--------AA-TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG--------AG-TGT-TTCGA-------------------ACTAAC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGA--AA------GACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--------AA-TAC-CTCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATGATA-AAGCTCGCTGTT-----GACA-TCTG--TT---CATCAAATACATGCA--CATTATA-TAAAAT----TACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTAAT--ATCATC-ATTTAGTTCAGGTAAATC--G-----T--GCATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTATTTTTGTGT--------TTTTGGAAATATA------CATCCTGTGTGAA-GT-GG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGAAC--ATGATT-AATGATGTGAGGTGAATCAT---------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATA-TACCTCGCTGTT-----GACA-TG----TT---CTCCAAATACATGCA--TG-TATA-Tgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAATC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAGTC-TGT--GATCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATC-AAATACGTAGATGTTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAaatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTT--GACA-T------CTGGT-----TA----------------TCAAATACAT---------ATA-TCAAAT----ATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTC-A-ATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAAAC--ATGATC-AGAAAGGCAAGGCGAATCATGAATCTC--GCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTCAGAAATGCA------CATCCTATGTG-G-CTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AA--G-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTATTTC--TA--AT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTGTTGTGTTTTT-TTT-TTCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : AAC--ATGATC-AGAAAGGTCAGGCGAATC--G-----C--GT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTA--------TTTTTGTAATTTTGGAAGTATA------CATTCTGTGAG-ACGT-AG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATAACA-TATCTCGCTGGTGGTGAGATATT-----TT---CTTCAAATA-GTGAAATTAAAACAGTCAAATATACACTTATTAT
gi|22 : tttctcaaactatcgtgattTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCATT----------G--------AA-TGT-TTCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATTtccat
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--------AT-TTT-TTCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTC-A-ATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AA--T-TGCT-AATC----CAGTTTATTTT-TGT------------GAACAATT-AAA--ctgttat
gi|3 : ATCAACTAAACTCA-TT---------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAAAC--ATGGTC-ATCGAGGTCAGGCGAA--ATG-----C--GCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGTGTT-T--------TTTTTTTAATATA------CATCCAGTGTG-ATGA-AT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CC-GATTG---CAGTTTATTTT-TGT------------GAATAATTCAAA--T-TAATAAGT---AG--ATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG--------AA-TGT-TTCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT-ATAT--GTGATCAAGAGAAGCCA
gi|33 : atggtATT---ATGAAACA--------TCTGCC-TATCA---CAGTTTATTTT-TGT------------GAATAATT-AAA--C-AAGtt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAgacatattggccaaagtata
gi|4 : AATCAAAGCAATTTA--------T--------TTTTGGAAATACATGTATTCATCATGTGTG-ATGT-AG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AA--TCTTCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA--T-AAGTAC-C---TG--TT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA------------AATTATTTTGTAAAATTT--------AA-TTT-TTCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AA--TATTCT-GATCA---CAGTTTATTTT-CGT------------AAATAATT-AAAATT-AAATAAGCACCCG--GT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATTT--------AATTTT-TTTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAA--C-TGCC-GATCA---CAGTTCATTTT-TGT------------TAATAAAG-AAAATT-AAATA----------AT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTG--------AA-TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCAACCAGTTATC-ATCAAGGTCACGCGAATCAAG-----CAAGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA-----T--AA-TTTTGTGTTTT--------------TTTT--------T--------TTTT---AATAAA------CATCCTGTATATC-GT-AGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-------T-TGCC-GAACA---TAGGTTATTTT-CGT------------GAATAACT-AAA--C-AGGGATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTAAGATAATATCTAACTGTT----------------------TTCAAATACATGCA--TGATATA-TTTAAT----ACCTATT-TCTT---ATATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCA-TTTCCA-ATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattTTGAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTAAAATA-TATCTCGCTGTT-----AACA-TATATGTT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCA-TTTA-ATATCACACTTTAACTCC--ATTTTCCAC-
blockSeqs : T A GGTGAGATATTTT C GC ATTAAA G ATAC A GTA T C A T C T A C T CC AT TTTAATATCACACTTT CA A CAGACT G T T . . TTTTC T GTG G C CAG A TT CATGAATCTC T A C CAAAA AAAGAAGATA . CA AA A TTTTTGTGT G TGTATT TCGTAGT C TT GTGCTTTATCAGT A . C CTTAGTATGTGATACTTTTGATTG TC A TGA TGGTAAC AA AGT . AAAAAAAAAAAA C ATC CGTAGATGTTATT C C T . C . C T TA TA AC A GG T C C G C CTG AACAAACTAATTT T A G A G C C G CTC TC AC A A A . AGGGATCC . TTGTGTTT T . G GCTA C . . TATC G T A CAG TGATA . AGTA
blockSeqs : A . AACATATATGTT C GC CATT . . A TAA . . T T T G . T A TG AC ATTTCAATCGCA . . AG G T . . . . . GCG . . A A AT CAAGCAA A T T . AAAGCTC . CG AA G TTTTTGTAA A . AAGTGG . A AGT G . . TATTCTTGAGTGTACATACAAAGG C A . AAAGTC G . . . . ATT AGCACCCGGTA C T A . . . . . . . AT . CA T T T T A . TAATTTA A A G . . . C A ATT GC T A A C . TT . . . . A . . . . . A T . ATT . . .
blockSeqs : T . GACATCTGTT C GA TGAT . . A ATT . . G A T A . C T CT AA TTTTCAATCACA . . AT G T . . . . . GCT . . A . GC ATGC A A T . AAAT . CA AA G TTGTGTTT G . GCTCGG . A AGT A . . ACTTTTGTGTTACTTTTGATG C T . AAATC G . . . . ATT TTTCTAATA . C A . . . . . . . T . TG T C C T T . . A A G . . . G A ATT AC T A C T . . . . . . A . . . . . G T . C . . .
blockSeqs : A . GACATGTT C GC TGAT . . T T . . T T . T . T T CG GT TTTCCAATCGCA . . TG T T . . . . . ATG . . G . GA CGT A G T . TC . TG AT T T T . ACGTAG . T GT A . . ACTGTTTGTTACCTTT T A . AAATA A . . . . T AGTAGATGT . C A . . . . . . . . . AG T C C G T . . T A G . . . G A ATT AC T A C C . . . . . . A . . . . . A T . A . . .
blockSeqs : A . TA C GC TGT . . . . . G CA CC TT . . G G . . . . . . GCA . . A . GA CAT T T A . . . . AA A T G . ATGAAT . A GT . . . AACTATTTTG . C . AAAG G . . . . T CCTGTTA . A T . . . . . . . . . CT T A T A C . . T A G . . . C G ATC AC T C C C . . . . . . G . . . . . A T . C . . .
blockSeqs : . . . . . . . . . . . . A . TC CGC C . . T . . ATGTAG . A AC . . . . . AAT T . . . . C ATT . C T . . . . . . . . . CG T C C T T . . T T G . . . A G ATC AC T A C T . . . . . . G . . . . . A T . A . . .
blockSeqs : . A . GA . . TC G . . . . T C T . . . . . . . . . TG . . C G A . . C G T . . . C A ACC AC T A A C . . . . . . G . . . . . A T . A . . .
blockSeqs : G . TC . AT G . . . . C . T . . . . . . . . . C . . . A T . . T T . . . . C C ATG G T A A C . . . . . . A . . . . . G C . C . . .
blockSeqs : . . G . . . . . T . . . . . . . . . C . . . G C . . T A . . . . T A AA G . A A C . . . . . . T . . . . . G . . G . . .
blockSeqs : . . . . . . . . . . . . T . . . . . . . . T . TC . . . C . . . . . . . T . . . . . . . . C . .
blockSeqs : . . . . . . . . . . A . . . .
blockSeqs : . . . . .
blockSeqCons : GACATTGTT************ GC TGAT** CG AC TTTTCAATCGCA****** *** **** GCG AA TTTGTT*********** ACGTAG*** A* AGT****************** ***** G* T*** T* ** ATC ** *** **
originalCons : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT-----GACA-T-----TT---CTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCA-TTTC-A-ATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTA--------T--------TTTTGGAAATATA------CATCCTGTGTG-A-GT-AG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
finalCons : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTTGACATTGTT------------CTTCAAATACATGCATGAT--ATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAACCTCATTTTCAATCGCA------AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTATTTGTT-----------TTTTGGAAATATA------CATCCTGTGTGACGTAG---GA-GTA-ATAAATTATTTGATAGT------------------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCCG-ATCA---CAGTTTATTTT-CGT------------GAATAATT-AAAT---AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA
Alignments
lowQualScore : 3333333333333 111111 1111 22222222222222 111111 111 1111 11111 222222222222 11111 3333333333333333333 44444444444 111111 444444444444444444444 1 11111 666666666666666666666666666666666666666666666666666 3333333333 222222222222 1111 333333333333333 1 11 3333333333333 11111111 11111111 11111
lowQualScore : 0 1 5 0 1 8888888888888 0 0 4 11 999999 5 4444 3 888 6 6 1 1 9 1 8 1 4 1 5 2 33333333333333 77 0 5 888888 2 3 6 111 2222 66666 6 111 5 5 666 8 33 555555555555 0 1 1 6 66666 6666666666666666666 1 3 33 5 3 5 77777777777 3 666666 22 0 5 5 77 0 666666666666666666666 0 44444 6 777777777777777777777777777777777777777777777777777 88 9 777 1111111111 44 777 4 000000000000 8 6666 777777777777777 1 4 33 55 3 3 3 7 55 55 33 3 0 0 0 66 5 1 4 4 0 6 666 1111111111111 1 0 1 3 3 3 3 1 1 222 44 44 1 3 2 3 55555555 3 22222222 3 3 2 7777 3 55 666 7777 1 2 0 3 00000 88888 0 55 8888
lowQualScore : . . . . . ............. . . . .. ...... . .... . ... . . . . . . . . . . . . .............. .. . . ...... . . . ... .... ..... . ... . . ... . .. ............ . . . . ..... ................... . . .. . . . ........... . ...... .. . . . .. . ..................... . ..... . ................................................... .. . ... .......... .. ... . ............ . .... ............... . . .. .. . . . . .. .. .. . . . . .. . . . . . . ... ............. . . . . . . . . . ... .. .. . . . . ........ . ........ . . . .... . .. ... .... . . . . ..... ..... . .. ....
lowQualScore : 4 9 7 1 4 7777777777777 7 1 3 44 777777 7 2222 5 000 7 7 0 4 0 0 0 4 6 7 2 2 22222222222222 99 7 7 777777 5 5 7 777 1111 77777 7 555 7 0 888 9 88 999999999999 1 9 0 3 77777 8888888888888888888 0 2 00 3 6 7 99999999999 0 444444 00 3 7 7 66 1 777777777777777777777 6 33333 7 666666666666666666666666666666666666666666666666666 77 5 000 0000000000 77 000 0 555555555555 0 9999 000000000000000 4 1 99 00 6 6 6 3 00 00 66 6 5 1 6 44 7 6 3 3 5 4 444 8888888888888 5 2 5 6 3 6 6 2 8 333 66 99 2 2 1 1 44444444 1 11111111 3 3 2 1111 3 00 444 7777 8 6 4 6 99999 33333 5 00 5555
consensus : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT-----GACAT---TGTTCTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAATCTCATTT-CAATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCATTTTCTGAAAATCAAAGCAGTCTATT-T--G-T-T----TTTTGGAAATATA------CATCCTGTGTGACGTAG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
Reference ( family-1868 ) : TTCAAACTATCGAATTCTGGTTCAAAGTGGCATATTTTACTGTCGAAATCGTGCATTTTTAAGATA-TATCTCGCTGTT-----GACAT---TGTTCTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTATCTTTATGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCTGTTATTATCTCATTGTT-AACCCTTTGATATAGACGCGAATCAACGAACCTCATTTTCAATCGCA----AACTCC--ATTTTCCAC-ATC-AG---GATGTTGATTTT-CGTGTAGAAGGTC---AAATCCCAAAATAAAATTACACATTACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATA-AAAATAGCGTCCAATCGTAAA-TA-GGGTCAAAC--GTGATC-AGCGAGGTCAGGCGAATCATG-----C--GCATCTAAAGTGCTGGAATTTCCCCGACNTTGCGCGGGAATCTAAC-----AAAAGAAAAG----TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTATT-T--G-T-T----TTTTGGAAATATA------CATCCTGTGTGACGTAG-GA-GTA-ATAAATTATTTGAT----------A-GT-------GATTACTACAC-----GCGTTTCTT-GGGGCCGA-A--CTT-AGTGTGTGATACTT----TTG----AT--------------G-GT-CATAAAATT---ATGAAATAA---AA--T-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTANGT---TG--AT-N-AAT-TAATTAGTTCAATT-AA--AA-AGT-CA-A-A--CA--CAC--T-TATAATTCCATAATTGCTACGCCGGTCACCGTTAATTAGCCTACATGTACATGTACAATAATTGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCCGCGACACTTGGTGATCAGAAGCCAGGTGTG-AA-A-ACACCTTTTTCGTATTATCGAGTCGCAAAAC-TGTGAAAATGTCCNTCT-GGGGACCA--------AA-TAATCATTTCGTACAATTG--------AA-TTT-TTCGAAC----TATTGAATTTCGTACTAGC-GAGTCCAAAATGCATTG--AGT---GTAT----AGGGAGTAATTTCGGGAC-TGAC--C--TA-----GTATTTCGGACCACCGCAAATTT--CGTACCACCGCGTTTCGTACC----AACGCAAAATCA
gi|1 : AACTATCAAAT-CTGGTTCAAAGTGGCATA-------------ATCCTGCAATTTTAAGATA-TGTCTCGCTGTT-----GACATC--TGCTCTTCAAATA----------------TCAAAT----ACCTATTATCTTTATATGTGTTTTGTAGAGAAATTCTTGTGCA-A-AATTTGTATTCTGCAACCTGTAAATATCTCATTGTC-AACCGTTGGATATAGACACAAATC----AATCT-------------------ACTTC--ATTTTCAAT-AGC-AA---AAT------TAT-C-------ACACCCCAAAATCCCAAAATAAAGTGATATATTACAATCCTCATTGTGTTACTATTTTAAGTTTTT-----ATA-AAAAAA------AGTCTTAAA-AA-CGGTCAAAC--ACGAAC-AGTGAGGTCAGATGCAT--TG-----C--GCATCTAAAGTGCTAGAATTTCCCCGACTTTGAGCAGGAACCTAAC-----AAAAGAAAAGG---TCAAAATACCATTTTAGGAATATT-----------TT-T--G-TGT----TTCTGGAAATATA------CATCCTTT-----------------ATAAATCATTTGAT----------GTGTTTAGACAGATTCCTACACTAGACACGTTTCTT-GGGGCTGA-A--CT--ATTGTGTGTTACTTCAGATTGTACAATTGCACAACTTCAAAGTGT-CATAAAATT---ATGAAATAA---AG--TCTGGC--ATCA---CAGTTTATTTTTCGT------------GAATAATTCAAA--TTAAATAAGT---AG--AT-CTAAT-TAATTAGTTCAATTCAAGTAA-AATACA-CTA--CA--CAC--T-TATAATTCCGTAATTGCTACGCCTGTCATAATTAGTTAGCCTA-A-----ATGTACAATAAATGTCATCG-GATTATC---AC-------------ACGTAAT--TGTCTGCGACTCTTGGTGATCAGCAGCTAGGTGAG-AA-A-ACTTTTTTTCCGCATT-----GTTACAAAAC-TGTGAAAATATCCTTCTAGGGGAACA--------AATTAATCATTTTGTACAATTG--------AA-TTTAATCAAAC----TATTGAATTTCATACTAGT-GAGACCAAAATGCGTTGACAGTATAGTAT----ATGGTGCAACTTTGGAA--------C--TA-----GTATTTTGGACCTTCGCAAATTTTGCGTACCACAGCATTTCCTACC----AACGCAAAATCA
gi|10 : atggatacacaatatacagtgatttcgcgttggttccaaatccatggaccatgattttttttaatcattatgatttggTACATGTACATGTACAATAAGTATAATCGCGATTATTCTGACTAATTTA------ATATAATTGTGTCCGCGACATTTTGTAATCATAAGCCAGGCGTG-AA-ACATATCTTTATCGTATTCTCGAGCCTCAAACC-TGTGAAATTGTCCATAT-AGGGACCAAGGGATCCAG-TAAGCATTTCGTACAATTG--------AG-TGT-TTCGA-------------------ACTAAC-GAGTCCAAAATGCATTG--AGT---TTAT----AGAGA--AA------GACATCAT--CAGTA-----GTATATCGGACAAACGCACATTT--CTTACCACCGCGTTTCc
gi|11 : taatTCAATT-AA--AA-AGT-CA-A-A--CA--CACACT-TACAAGTCCATAATTGCTACGCTGGGCACGGTTAAT-----------TACATGTACTATAATTATCATTGAGATTATC---ACAACAAACTAATTTACCTAA-TGTGTCCACAACACTTGGCAATCAGATGCCAAGTGTG-AAGA-ACACCTTTTTCATATTATTGAATCGCAAAAC---TGAACTTATCCAT--------CCA--------AG-TAATCATTTCGTACAATTG--------AA-TAC-CTCAAAC----CACTGAATTTCATcataaacactga
gi|12 : gAACTATCAAATTCTGGTTCAAACTGGCATATTTTACTGTCGAAATCGGGCATTTTTATGATA-AAGCTCGCTGTT-----GACATC--TGTTCATCAAATACATGCA--CATTATA-TAAAAT----TACTATTATCTGTATGTGTGTTTTGTTGATATATTCTTGCACA-A-AATATGTATTATGCAACCTAT
gi|13 : aacatttatatacatgtatacatacagccacaggaccatgatattttttcaaatcatcacatttttggTCAAAGTGGCATATTTTACTGTCAAA
gi|13 : A-GGATCTAAT--ATCATC-ATTTAGTTCAGGTAAATC--G-----T--GCATCTAAAGTGCTTGTATTCCCCCGAAATTGCACGGGAATCTAAC-----GAA-----------------TGCCATTTTCTGAAAATGAAAGCAATCTATT-TTTG-TGT----TTTTGGAAATATA------CATCCTGTGTGAAGTGG-GA-GTA-ATGCATTATTTGATGTGCTTTATCA-GT-------AACTACTACAC-----GCGTTTTTtaaataaaaacaaggatctaatatcatcatttagttcaggtaaatcgtgcatctaaagtgcttgtattcccccgaaattgcacgggaatctaacgaatgccattttctgaaaatgaaagcaatctatttttgtgtttttggaaatatacatcctgtgtgaagtgggagtaatgcattatttgatgtgctttatcagtaactactacacgcgttttt
gi|14 : tcaaagtggcatattttactgtcaaataaataaaaacaAGTT-AATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAAT
gi|15 : TTAATA-AA--AC-AAT-CA-A-A--CA--TAA--T-TGTAAATCCATAATTGCTAAGCCAGTCATC---AAT--------ATTTACATGTAAAATAATTGTTATTATGATTGTC---AC-------------ACCTAAACACTTCTGCAATTCTTGGTAATGAGAAGCCAG----G-AA-T-AAATGTTTTTTATATTATTGAGTCG-AAAAC-TGTGA--------------------A--------AA-TAATCATTTCGTACGATTG--------AA-CTT-TTTAAGC----CATAGGATTTTGTACAAAC-G----CAAAATca
gi|16 : gCC--ATTTTCCAC-ATCCAGACTGATGCTGATT---CGTGTAGACGGTC---AAATCTCAAAATAAAGCTACACATTATA----TTATAGTATTACTATTTAAAGCTTTT-----ATA-AATATAGTGTCCAATCATAGA-TA-GGGTTGAAC--ATGATT-AATGATGTGAGGTGAATCAT---------GCATCTAAAGGGCTGGAATTTCCCTGca
gi|17 : tcaattaatgttatttaTTCAAACTTTTGCATTCTGGATCAAAGCGACATATTTTACAGTAAAAATCATGCACTTTTAAGATA-TACCTCGCTGTT-----GACA----TGTTCTCCAAATACATGCA--TG-TATA-Tgagtcttt
gi|18 : aactttaatatagttacatatattcgcatgggatccaaatccactggaccctaatatttttaatcgtaccatcatgattA----AACTTC--ATTTTCCAC-GAC-AG---GAAGTTTGTATT-TGTGTAAAATAAC---ATTTCCCCTAGTAAAATTACCCATGACA----TCATAGTGTTACTATTTAAAGTTTTT-----ATATAAAATAGCGTCCAATCGAACA-TACCGGTCAATC--GTGATCAAGCGAGGTCAtgacttatgtgttat
gi|19 : cgcccatgtatttctatctcaaaaataacacacatTGTGATACTT----TTC----AT--------------G-GT--ATA---TTTGAATGGAATGA---AAGTC-TGT--GATCA---ATGTTTATGAT-GG-------------AAATAATT-AAAATC-AAATACGTAGATGTTAT-T-AAT-TAATAAGTTCAATA-GA--AA-AGT-CA-A-A--TA--CGC--TATATAATTTCATAGTTGGTAttgca
gi|19 : AAATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAAaatgtccctctggggatcagataattatttcatgcaa
gi|2 : tgtgatacttttcatggtatatttgaatggaatgaaagtctgtgatcaatgtttatgatggaaataattaaaatcaaatacgtagatgttattaattaataagttcaatagaaaagtcaaatacgctatataatttcatagttggtTTTAAACTATCCAATTCTGGTTCAAAGTAGCATATTTCACTGTTGGTTTCCTGCATTTTT--GACA-T------CTG----------------GTTAT-CAAATACAT---------ATA-TCAAAT----ATCTATTATTTTAATGTGTGTTTTGTAGAGATATTCATGTACA-A-AATTTGTTATCTGCAACCTTTTA--ATCTCATTATT-TACTCTTTGATATAGATGTGAATCAACCAATCTCAATTTCAATCGCA----GACTCCCAATTTTCGAC-ATC-AT---GACGTTGAGTTT-TGTTCAGAAGATC---AAACCCCAATATAAAATTACACATTACA----TCATAGTATAACTATTTAAAGATTTT-----ATA-AAAATAGCTCCCAATCATAAA-TA-GGGTCAAAC--ATGATC-AGAAAGGCAAGGCGAATCATGAATCTC--GCATTTAAAGTGC-GAAATTTCCCTGACTTTGTGAGGGAATCTAAC-----AAAAGAAAAGC---TCAAA-TGCCGTTTTCTGAAAATCAAAGCAGTCTATT-T-------------TCAGAAATGCA------CATCCTATGTGGCTCGG-GA-GTA-ATAAATTATTTGGC----------A-GT-------GATTGCTACAC-----ACGTTTCTT-GGGGCCGA----CTT-AGTATGTGATACTT----TTG----ATT-------------G-GTTCATTAAATT---ATGAAATAA---AA--G-TGCC-GATCA---CAGTTTATTTT-CGT------------GAATAATT-AAA--T-AAGTATTTC--TA--AT-A-AAT-TAATTAGTTCAATT-AA--AA-GTT-CA-A-A--CA--CAC--T-TACAATTCCATAATTGCTACGCCGGTCACCATTAATTAGCCTATATGTACAGGTACAGTAATTGTCATTGCGATTATC---AT-------------ACCTAATTGTGTCCGCAACACTTGGCAATCAGAAGCTATGTGTC-AG-A-ACACCTTTTTTGTATTATCGGGTTACAAATT-TGTGAAAATGTCCCTTT-GGGGACCA--------AA-TAATCAATTCGTACAATTGTTGTGTTTTT-TTT-TTCGAAG----TATTGAATATCGTACTAGC-AAGTCTAAAATGTATTG--AGT---GTAC----AGGGAGTAATTTCGGGAT-TAAT--C--TA-----GTATTTCGAATCACCGAATATTT--CATACCACCTCGTTTTATATC----AATGCAAAATCA
gi|20 : AAC--ATGATC-AGAAAGGTCAGGCGAATC--G-----C--GT-TCCAAAGTGCTGGAATTTCCCCGACACTGTGCGGGAATCT--------AAAAGA--------TCAAA-TGA---TTTCTGCAAATCAAAGCAGTCTATT-T----T-TGTAATTTTGGAAGTATA------CATTCTGTGAGACGTAG-GA-GTT-ATAAGTTATTTGA
gi|21 : TTCAAACTACCAAATTCTGGTTCACAGTGACATATTTTAATGTCAAAATTGTGCATTTTTATAACA-TATCTCGCTGGTGGTGAGATAT---T-TTCTTCAAATA-GTGAAATTAAAACAGTCAAATATACACTTATTAT
gi|22 : tttctcaaactatcgtgattTA-AA-A-ACACATTT-----ATTA-AAAGT---AAAATACATGACAATGTCCCTCT-GGGGACCA--------AA-TAAGCATT----------G--------AA-TGT-TTCGAAC----TTGTGAATATCGTACTAGC-GAGTCCAAAATGCTTTG--AGC---GAAT----AGGGAATAATTTCGGGAC-TGAC--A--GA-----GTATTtccat
gi|23 : aaAATT-AA--AACAGT-CA-A-A--TATACAC--T-TATTATTCCATAATTATTTCATAGGTCACTGTTAATTAGTCTACAAATGCAAGTACAATAATTGGCATTGTGATTATC---AC-------------ACCTAATTGTGTCTGCAACATTTGGTGATCTGAAGCCAGGTGCG-gccac
gi|24 : gtgaATGTCCCTCT-GGGGATCA--------GA-TAATTATTTCATGCAATTG--------AT-TTT-TTCGAAC----TATTGAATTTTGTACTAGC-GAGTTCAAAATGCATAG--AGT---GCAT----AGGTAGTAATTTCAGTAC-TGGC--C--TA-----GTATTT
gi|25 : GTGTATTTTGTAAAGATATTCTTGTATA-A-AATTTGTATTCTGCAACCGGTTACTATTGCATTGGTAAACTTTTTGATATAGAAGCAAATCAGTGAACTTCGTTTTCAATCACA----
gi|26 : AC--A--TA-----ATATTTCGAACCATCGCAAATTT--CGTTCTATCACGTTCTGTACC----AACGCAAAATCA
gi|27 : tcaatatgataaaacgttgttatgtttatgtatttaacctAGTGCAATG--AGT---GTAT----AGGGAATAATTTCAGGAC-TGGCATT--TA-----ATGTTATGCAGCACTGCAAATTT--CAAACTGCTGCGTTTTGTACC----AGTGCAAAATct
gi|28 : ACTAGCCGAGTTAAATATTCATTG----T---GAAT----AGGGAATAA--------------------------GTATTTCAGACCACCACAAATTT--CGTGACACTGCATTTCGTACC----AACAC-AAATCAaac
gi|29 : TTTGAC----------A-GT-------GATTATAACAT-----GCATTTCTA-CGGGCAGA-A--CT---GTTTGT--TACCT----TT-----------------------GT-CA-A----------GAAAT-----AA--T-TGCT-AATC----CAGTTTATTTT-TGT------------GAACAATT-AAA--ctgttat
gi|3 : ATCAACTAAACTCATT--------------AACTCC--ATTTTCCAC-ATC-TG---GATTTTGATTTTTCGTGTAAAAGGTC---AAATCCCAAAATAAAATTGCACATTTCA----TCATAGTGTTACTATATAAATTTTTTTTTTCATA-AAAATAATGCCCAATCGCAAA-TA-GGATCAAAC--ATGGTC-ATCGAGGTCAGGCGAA--ATG-----C--GCATCTAAAGTGCTGGTATTTCCACAACGTTGTGCAGGAATCTAACCAAAAAAAAAAAAAGAAGATAAAA-TGTCATTTTTTGAAAATCATAACATTCTGTTGT--GTT-T----TTTTTTTAATATA------CATCCAGTGTGATGAAT-GA-GTA-ATGAACTATTTGAT------------GT-------GATT-TTATAT-----GCGTTTCTT-GAGGCCAA-A--CTT--TTGTGT--TACTT----TTG----AT--------------G-GT-CATAAAATT---ATGA----------------CC-GATTG---CAGTTTATTTT-TGT------------GAATAATTCAAA--T-TAATAAGT---AG--ATGT-AAT-TAATTAGTTAAATT-AA--AA---T-CA-A-A--TA--CACT-T-TATAATTCCATAATTGCTACACTGGTCACAGTTAATTAGCCTACATTTTCATGTACAATAATTGTCATAGAGATTATC---AC-------------ACCTACTTGTGTCTGAGACACTTGGTGATCGGAAGCTGGGTGTG-AA-A-ACACCTTTTTCGTATT-TCGAGGCACAAAAC-TATGAAAATGTCCATTT-AGGGACCA--------AA-TAATCATCTTGTGTAATTG--------AA-TGT-TTCAAAA----TATTGAATTTTGTATTAGC-GAGTCTAAAATGCATGA--AGT---G
gi|30 : T----AGAGAATAATTTTGAGAC-TGAC--A--TATGATAGAATTTCGAACCACCGCAAGTGT--AGTACCAACACATTTCATAAC----AATGTAATATC
gi|31 : tA----TCATGATGATGCT-TTTAATTTTTTT-----ATA-AAAATGGCATCCAATAGTAAAGCA-GAAT-ATAT--GTGATCAAGAGAAGCCA
gi|33 : atggtATT---ATGAAACA--------TCTGCC-TATCA---CAGTTTATTTT-TGT------------GAATAATT-AAA--C-AAGtt
gi|35 : GCAAATTT--CATACGACCACGTTACGTACA----GACGCAAAATCAgacatattggccaaagtata
gi|4 : AATCAAAGCAATTTATT-T-------------TTGGAAATACATGTATTCATCATGTGTGATGTAG-GA-GTA-ATTA-TGATTTGAT------------GT-------GTTTACTACCC-----GCATTTTTT-CGGACCCA-A--ACT-A-----------TT----TTG---------------------------TATAATT---ATGAAATAA---AA--TCTTCCAAATTAAGTCAGTTTATTTT-CATAAAAAAAAAAAAAAATAA-A-AAA--T-AAGTAC-C---TG--TT-A-AATCTAATAAGTT-A----AA--AA-AGT-CACATA--CA--CAT--T-TTTTACTCCATAATTGCTTTGCTGGTCACCTTCAATTAGCCTATATG--CATGTGCAATAATTGTCATTGTGATTATA---AC-------------ACCTAACTATGTCCACGACA-TTGTTGATC------------TG-AA-A-ACACCTTTTTCAGATTATCCAGTCACAAAAC-TGTGAAAATGTCCATCT-GGGGTCCA------------AATTATTTTGTAAAATTT--------AA-TTT-TTCTAAC----TATTGAATTTCGTACTAGC-GAATCCAAAATACATTG--AGC---GTAT----AGGGAATAATTTTGGAAC-TGAC--C--TA-----GTATTTCGAACTACCGCAAATTT--CGTACCACGGTGTTCCATACTAGTAAATGCAAAATCctg
gi|5 : TT---ATGAAATAA---AA--TATTCT-GATCA---CAGTTTATTTT-CGT------------AAATAATT-AAAATT-AAATAAGCACCCG--GT-A-GATCTAATTAATTCAATT-TA--AA-AGT-TG-A-A--TA--CACATT-TATCACTCCATTATTGCTTCGTCGGTCACCGTTAATTAGAATACATATGCATGTACAAT---TGTCATTGCGATTATC---AC-------------ACCTAATTGTGTCTGCGACACATGGTGATCTGAAACCGGGTGTGAAA-A-ACAGTTTGTTCCTATTACCAAGTCACAAAAC---TGAAAAAGCACATCT-GGGGACCATT------AA-TAATAATTTCCTACAATTT--------AATTTT-TTTTATC----TTTTGAAATTCAT-C------AATCCAAAATACATTG--TGT---GTATTATCAGGGAGTCATTTTGGGAC-TGAC--G--TA-----GTATTTCGAACTACCGTAAATTT--TGTACCAACTCGTTTTGTACT----AACGCAAAATCgc
gi|6 : AGATT---ATAAAATATGGTAA--C-TGCC-GATCA---CAGTTCATTTT-TGT------------TAATAAAG-AAAATT-AAATA----------AT-T-AAT-TAATTGGTCCAATT-AA--AA-AGT-GA-A-ATACA--CAC--T-T----TTCCTTAAT-GCTATGCCTGTAACTGTTAATTAGCCTGCATGTACATGAGCAATAATTTCCATTGTGATTATC---AT-------------ACCTTATTGTGTCTGTGACACTTGGTGATGAGAAACAAGTTGTA-AA-A-ACACTTTTTTCATATTATGGAGTCACAAAAC-TGTGAAAATGTCCCTCT-GGGGATCA--------AA-TAATCATTTTGTAAAATTG--------AA-TT-----AAACGCTATATTGAATTTTGTACTAGA-AAGTTCAAAATGTATTG--AGT---CTAT----AGGGAGAAGCTTCGGGAC-TGAC--C--TA-----GTA-CTCAGAGCACTGCAAATTT--CATACCAGTGTGTTTCATACC----AGCACAAAGTCA
gi|7 : TAAA-TA-GCGCCCAACCAGTTATC-ATCAAGGTCACGCGAATCAAG-----CAAGTATT----GTTATGGCATTTCCCCGATTCAGAGCGAAAATGTAAC-----AAAAGAAAA------TAA-------TTTTGTG-------------TTT-TT-T--T-T-T----TTTT---AATAAA------CATCCTGTATATCGTAGTGACGTTTATAAATTATTTGAT----------A--C-------GAGT-TTACAC-----GTTTTTTTTCGAGGCCGATATTCTTGAGTGTAC-ATACA-------A----AG--------------G-GT-TATACAATT---ATGAAATAA-------T-TGCC-GAACA---TAGGTTATTTT-CGT------------GAATAACT-AAA--C-AGGGATAT---Tctg
gi|8 : tcgtaaatcatatttttaaaaaaaaTCGAATTCCGATTCAAAA-AGCATATTTTACTGTCGAAATTGAGCATTTTTAAGATAATATCTAACTGTT------------------TTCAAATACATGCA--TGATATA-TTTAAT----ACCTATT-TCTT---ATATGCTT----AAGATATTTTTATGCATACAATTTGTATTCTGCAACCTTTAATTATCAAATTGTT-AATCCTTTGATATAGATGCGAAATGACGAGTCTCATTTCCAATCGCA----AACTCT--GTTTTCAACAATC--G---AATGTTGATTTT-CGCGCAGAAGGTC---AAATCACAAAATAAAAGTACACATTGCA----CCATatagtggtcaaaatat
gi|9 : tttgttttagaaccattgcgatattTTGAATTCTGGTTTAAAGTGGCACATTTTACTGTCGCAATTGTGCATTCTTAAAATA-TATCTCGCTGTT-----AACATATATGTTCTTCAAATACATGCA--TGATATA-TCAAAT----ACCTATTTTCTATTTGTGTGTTTTGTAGAGATATTCTTGTACA-A-AATTTGTATTCTGCAACCCGTTATTATTTCATTGTT-AACCTTTTGATATAGATACGAATCAACAACCCTCATTTAATATCACACTTTAACTCC--ATTTTCCAC-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|32 ): GAATATACAGTGATTTAGTGTTGGTTTGAAATCAATGTGACCGTGATTTTCTTTCAAACTATCGCGCTTTTTGAACTATCAAA
Unaligned ( gi|34 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
Unaligned ( gi|36 ): GTGAAAGATAACAATGAGCTTTTTTTTGTCAA