lowQualScore : 1 1111 11111 444444444444444444444444444444444444444444444444444444444444444444444444444444 3 1 1 4 1 1 1
lowQualScore : 2 3 444 2222 777777 55555 88 1 99999 666666 444 5555 33 999999999999999999999999999999999999999999999999999999999999999999999999999999 2 2 777777 2 6666 2 2 8 6 4 1 6 2 5 9999 888 3 0 6 5 0 7 5 5 5 7 6 6
lowQualScore : . . ... .... ...... ..... .. . ..... ...... ... .... .. .............................................................................. . . ...... . .... . . . . . . . . . .... ... . . . . . . . . . . . .
lowQualScore : 4 9 111 8888 222222 99999 99 2 44444 444444 111 0000 22 444444444444444444444444444444444444444444444444444444444444444444444444444444 4 5 777777 9 1111 5 7 5 0 0 8 0 7 4 4444 888 8 4 0 0 0 0 0 0 0 0 7 0
consensus : AAAGTAATTATA-TACAAAATT---CGTAAATACT----CTAT------TATATACATA-----GGTTAAC-TATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTG-AG--TATCCA------ATATT---GTCAGT----ATG--GAGTGTA--------------GT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATA-TTTCTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
Reference ( gi|1 ) : AAAGTAATTATA-TACAAAAGT---CGTAAATACT----CTAT------TATATACATA-----GGTTAAA-TATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTG-AC--TATCCA------ATATT---GTCAGT----ATG--GAGTGTA--------------GT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAAATA-TTTCTTCTTTTTAAGAAAGCACAGACAAGAAACATTTGCAAGTTGTCTTGGGTGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGAACAAGTTGCTCCCCAACATACCTTCCGGCTTCAAGTCTGAGTGGTAAGATACC-GTTCTGATTTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATGTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATAAACTTTGA-ACGTCTTTTG
gi|4 : AAAGTAATTATA-TTCAAAATT---CGTAAATACT----CTAC------TATATACATA-----GGTTAAA-TATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTA-AG--TATCCA------ATAGT---GTCAGT----ATG--GAGTGTA--------------GT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AACATATCATACATAAAAAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAGAAA-TTTCTTCTTTTTAAGAAAGCACAGACAAGAA--------AAGTTGTCTTGGATGCGCTGATATGATATATACATGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAACTTGTTTTCTCGCAGATCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAGTTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATATAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTTTCAGTTTTGATATACTTTGA-AGGTCTT
gi|3 : AAAGTAATTATA-TACAAAATT---CGTAAATACT----CTAT------TATATACATA-----GGTTAAC-TATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTG-TG--TATCCA------ATATT---GTCAGC----ATG--GAGTATA--------------GTATGATAGATATGTT---A--------------T--------------A--------------C-ATAT-A------ATAGGAA-AACAGGC----AATATATCATAAATCAATACTACATGAGGTATT-------------------ACGAAAACAAGGTA-TTTCTTCTTTTTAAGAAAACACAGACAAGAAAC-TTTGCAAGTTGTCTTAGATGCGCTGATATGATATGTGCTAGTCGTTGGTTTACATGTATGTAAACATTATTTACAAATAAATCTCTGGAATTGTTTTCTCGCAGGTCATTACACAGTTAACACTGAAATAGAAAGTG-TTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCACTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAGGCGATGCGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTGc
gi|8 : AAAGTAATTATG-TACAACATT---CTTATAAACT----CTAT------TATATACATA-----GGTTAAA-TATGACGTACACAATCCTAACAAAATATTAGTACAATATTCCATG-AG--TATCCA------ATATT---GTCAGT----ATG--GAGTGTATTTATGATAGATATGT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATACCATACATCAACAATACATGAGGTATTTAGTCTGACACAATAGTTTACGAAAACAAGATA-TTTCTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGAAAGTTGTTTTGGATGCGCTGATATGATATGTGGAAGTC--TGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTAACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCTCCAACATACCTTCCGGTTTCAATTCTGAGTCGTAAGATACCAGTTCTGAATTGACAAAATACAGAGCGTTCAT-TCTTGTTTAAATTCATCAT
gi|9 : AAAGTAATTATA-TACAAACTG---CGTAAATACT----CGAT------TATATACATA-----GGTTAAC-TATGACGTACAAAATCCTGACAAAATATTAGTACAATATTCCCTG-AG--TATCCA------ATATT---GTCAGT----ATG--GAGTGCA--------------GT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTTAATCTGACATAATAGTTTACGAAAACAAGATA-TTTCTTTTTTTTAAGAAAGCACAGTCAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCCGATATGATA-GTGGAAGTCGTTGGTTTATATGCATGTAAGCATTATCTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCCTACTGAAATAGAAAGTGTTTTTCA-CCTCTA----CTGAATTTGACTGACAGAGTCTACAca
gi|16 : AAAGTAATTATA-TACAAAATT---CGTAAATATC----CTAT------CATATACATA-----GGTAAAC-TATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTG-AG--TTTAAA------ATATT---GTCAGT----ATG--AAGTATA--------------GT-------------T---A--------------T--------------GATAGATGTGTTATTA-ATAT-A------ATAGGAA-AACAGGC----AATA
gi|17 : AAAATACTTATA-TACAAAATT---CGTAAATACTG---CTAT------TGTATACATA-----GGTTAAC-TATGACGTACAAAATCCTGACAAAACATTAGCAATATACTTCCTG-TG--TGT---------GTATAAGAGTCATT----ATG--GAGT--A--------------GT-------------TATGA--------------T--------------A--------------A-ACAT-
gi|19 : AAAGTGATGATA-TACACACTT---TGTAAATACTA---CTAT-------ATATACATA-----GGTTTAC-TATGAAGTACAAAATACTGACAAAATATTAG-AAAATATTCACTG-TG--TATTTA------ATAgtta
gi|18 : AAAGTAATTATA--AAAAAAAT---CGTAAATACgt
gi|7 : gAAGTAATTATA-TACAAAATT---CGTAAATACT----TGAT------TATATACATA-----GGTTAAA-TATGACGTACAAATTTCTGACAAAATATTAGTAAAATATTCTCTG-AG--TATCCA------ATATT---GTCAGT----ATG--GGGTGTA--------------GT-------------T---ATGATAGATATGTTGT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATAAGGTATTAAGTCTGACATAATAGTTTGCGAAAACAAGATA-TTTCTTCTTTTTATGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGCATTATTTACAAATAATTCTCTGAAATTTTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAAAAAGCGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCTGTTTCAATTCTGAGTGGTAAGACACCAGTTCTGAATTGACACAATACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTTACATTTAAAGTTTTCATTAAACAGGCGATATcgattgaagtacaaaatataagcaaaatattccctgtgtatttaatattgtcagtatggacggtagttgtggtaaatgcgttataaatacaa
gi|6 : AAGTAATTATA-TACAAAATT---CGTAAAACCT----CTAT------TATATACATATGTTAAGTTAAACTATGACGTACAAAGTGCTGATAACATATTAGCAATATATTCCCTG-AA--TATCCA------ATATT---GTCAGT----ATG--GAGTGTA--------------GT-------------T---A--------------T--------------G--------------ATATAT-GTGTTACATATGAA-AACAGGC----AATATATCATATATCAACAATACATGAGGTATTAAATCTAACATAATAGTTTACGAAAACAAGATA-TTTCTTCTTTTTAAGAAAGCACAGACAAGAAA-ATGTGTAAGTCGTCATGAATGCGCTGATATAATATGTGGAAGTCGCTGGTTTATATGCATGTAAGCATCTTTTACAAATACATCGCTGGA-----------------CATTATACAGTTCACACTGAAATAGAAAGTGTTTCTCATCTTCTA----CTGAATTTGACTG---------ACAAA---GTCTCTGATCAGGTTGTTCCTCAACGTACTTTTCGGTTTCATTTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGTGTTTAT-TCTTGTTTAAGTTCATCATAACGTAATCATCGCATTTAAAGTTTTCCTTAAACAGGCGGTATGTTCTC-TTTCCGATATACTTTGA-ACGTCTTC
gi|10 : AAGTAATTATA-TACAAAATT---TGTAAATACT----CTAT------TATATACATT-----GGTTAAC-TATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCAG-AG--TATCCA------ATATT---GTCTGT----ATC--GAGTGTA--------------GT-------------T---A--------------TGATAGATATGTTATA--------------A-ATAT-A------ATAAGAA-AA---GC----AATATATCATACATCAACAGTACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTTCTTCTTTTAAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTTTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGTATTATTTACAAATAAACCTCTGAAACTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAa
gi|2 : AGTAATTATA-TACAAAATT---CATAAATACT----CTAT------TATATACATA-----GGTTAAA-TATGAAGTACAAAATCCTGACAAAATATAAGTAAAATATTCCCTG-AG--TATCCA------ATATT---GTCAGT----ATG--GAGTGTA--------------GT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATACTATTTTACGAAAACAAGATA-TTTCTTCTTTTTAATAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGT-TTTTTCATCTTCTG----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCATCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|12 : cAGTAATTATA-TATAAAATT---CTTAAATACT----CTAT------TATATACATA-----GGTCAAC-TATGACGTACAAAATCCTGACAAAATATTAGCAAAATACTCCCTG-AA--TATCCA------GTATT---GTCAGT----AAG--GATTGTAGTTATGATAGATATGT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCAAATATCAATAATACATAAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATA-TTTCTTCTTTTTAAGAAAGCACAGACAA
gi|13 : AGTAATTATA-TACATAATT---CGTAAAAACTGCTGCTAT------TATATACATA-----TTTTAAC-TAAAATGTACAGCATGCTGATAAATTATTAGCAAAATATTCCCTGTGCCATATGTATTGTTGATATT---AACAGTGGTCATGATAAGTACA--------------G--------------T---A--------------T--------------A--------------A-ATAC-A------ATAAGAA-TACAGGC----AGTATATCATACATCAACAATACATGAAATGGTTAGTCTTACATGATAGTTTttaa
gi|14 : cGTAATTATA-TACTAAATT---AGTAAATACTG---CTATAACATGTGTATACATG-----GGTTAAC-TATGAAGTACAAAATGCTGACAAAATATTAGCAAAATAATTTCTG-TG--TATTTA------AAAGT---ATTTAC----ATG--TTATACA--------------AT-------------T---G--------------T--------------T--------------A-ATATGG------ACAGTAATAATGGTG----AGTAT---ATATATCAACAACATGTGAACTATT
gi|15 : AATTATAATATAAAAATATTCGTAAATACT----CTAT------TATATAAGTA-----AGTTAAC-TATAAAGGACAAAATCATAACAAAATAACAGCAAAATATTTCCTG-AG--TATTCA------ATATT---GTCAGT----TTT--ATATATAT-------------TT-------------T---A--------------T--------------A--------------A-ATAC-A------ATAGGAA-AACTAGTATTAAATATACCATAGAACAA-ACTA---GAGGTTTT
gi|5 : TA-TACAAAATT---CGTAAATACT----CTAT------TATATACATA-----GGTTAAA-TATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTG-AG--TATCCA------ATATT---GTCAGT----ATG--GAGTGTA--------------GT-------------T---A--------------T--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATAGCATGCATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAGCAAGATA-TTTCTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCTTTGGTTGATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTACTCGCAGGTTATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGGCAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGTGTGGTAAGATACCAGTTTTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|20 : CATA-----GGTTAAC-TGTGAAGTACAATAGGCTGACAAAACATTAGCAAAATATTCCCCG-TG--TATTTG------ACAGT---GTCAGT----ATG--GACACTA--------------GG-------------T---A--------------T--------------A--------------A-GTAT-A------
gi|18 : ACAAAATATAAGCAAAATATTCCCTG-TG--TATTTA------ATATT---GTCAGT----ATG--GACGGTA--------------GT-------------TGTGG--------------T--------------A--------------A-AT
gi|21 : gaaagtaattataaaaaaaatcgtaaataccgattgaagtTGTAAGCATTATCTACAGGTAAATCTCTGAAATTGTTTTTTCGCAGGCTATTATACAGTTCACACTGAAATAGAAAgcgttataaatacaa
gi|11 : aTTATATAAATCACATTCAAGTAAAAAATGTTTCTCATCTTCTGTGGCCTGCAT---A-TCACAGAATCTACAAGTCCGTCTCTCAATAGGTT-CACCC--ACATATCGTTCTGTCCCTATTCGTAACGTTAGCATTCCGGTCCTAAATTGGCAAAGTAACGATCGTTCATGTTTTG-ACAGATTCATAGTTATATAGTTTTCGCACTTAAACTCCGTTTTGAATAATCTGTATGTTCGTAATTTAGGCATA-TTTGATACGTtatatgttacca
Alignments
lowQualScore : 1111 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 2 333 2222 666666 666666 0 0 333 666666 333 4444 33 3333333333333333333333333333333333333333333333333333333333333333 2 2 777777 2 5555 0 3 4 1 8888 777 4 1 5
lowQualScore : . ... .... ...... ...... . . ... ...... ... .... .. ................................................................ . . ...... . .... . . . . .... ... . . .
lowQualScore : 2 999 1111 888888 444444 2 6 777 111111 999 7777 11 6666666666666666666666666666666666666666666666666666666666666666 2 4 222222 7 7777 4 6 0 0 5555 888 4 0 7
consensus : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
Reference ( family-1828 ) : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|1 : AAAGTAATTATA-TACAAAA---GTCGTAAATACT----CTAT------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGAC---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAAATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAACATTTGCAAGTTGTCTTGGGTGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGAACAAGTTGCTCCCCAACATACCTTCCGGCTTCAAGTCTGAGTGGTAAGATACC-GTTCTGATTTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATGTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATAAACTTTGA-ACGTCTTTTG
gi|10 : AAGTAATTATA-TACAAAA---TTTGTAAATACT----CTAT------TATATACATTGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCAGAG---TATCCA------ATAT---TGTCTGT----ATCG--AGTGTA--------------GT-------------T---ATGATAGATATGTTATA--------------A-ATAT-A------ATAAGAA-AA---GC----AATATATCATACATCAACAGTACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTTCTTCTTTTAAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTTTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGTATTATTTACAAATAAACCTCTGAAACTGTTTTCTCGCAGGTCATTATACAGTTCACACTGA
gi|11 : TTATATAAATCACATTCAAGTAAAAAATGTTTCTCATCTTCTGTGGCCTGCAT---A-TCACAGAATCTACAAGTCCGTCTCTCAATAGGTT-CACCC--ACATATCGTTCTGTCCCTATTCGTAACGTTAGCATTCCGGTCCTAAATTGGCAAAGTAACGATCGTTCATGTTTTG-ACAGATTCATAGTTATATAGTTTTCGCACTTAAACTCCGTTTTGAATAATCTGTATGTTCGTAATTTAGGCATA-TTTGATACGT
gi|12 : ttaaaatatcacaaaacatatttgtcctgatattgAGTAATTATA-TATAAAA---TTCTTAAATACT----CTAT------TATATACATAGGTCAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATACTCCCTGAA---TATCCA------GTAT---TGTCAGT----AAGG--ATTGTAGTTATGATAGATATGT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCAAATATCAATAATACATAAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAagtgcaaccacttgtctctataatgttgggttattaa
gi|13 : AGTAATTATA-TACATAA---TTCGTAAAAACTGCTGCTAT------TATATACATATTTTAA------CTAAAATGTACAGCATGCTGATAAATTATTAGCAAAATATTCCCTGTGCCATATGTATTGTTGATAT---TAACAGTGGTCATGATAAGTACA--------------GT-----------------AT--------------A--------------A-ATAC-A------ATAAGAA-TACAGGC----AGTATATCATACATCAACAATACATGAAATGGTTAGTCTTACATGATAGTTTttaa
gi|14 : cGTAATTATA-TACTAAA---TTAGTAAATACTG---CTATAACATGTGTATACATGGGTTAA------CTATGAAGTACAAAATGCTGACAAAATATTAGCAAAATAATTTCTGTG---TATTTA------AAAG---TATTTAC----ATGT--TATACA--------------AT-------------T---GT--------------T--------------A-ATATGG------ACAGTAATAATGGTG----AGTAT---ATATATCAACAACATGTGAACTATT
gi|15 : AATTATAATATAAAAATATTCGTAAATACT----CTAT------TATATAAGTAAGTTAA------CTATAAAGGACAAAATCATAACAAAATAACAGCAAAATATTTCCTGAG---TATTCA------ATAT---TGTCAGT----TTTA--TATATAT-------------TT-------------T---AT--------------A--------------A-ATAC-A------ATAGGAA-AACTAGTATTAAATATACCATAGAACAA-ACTA---GAGGTTTT
gi|16 : AAAGTAATTATA-TACAAAA---TTCGTAAATATC----CTAT------CATATACATAGGTAAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TTTAAA------ATAT---TGTCAGT----ATGA--AGTATA--------------GT-------------T---AT--------------GATAGATGTGTTATTA-ATAT-A------ATAGGAA-AACAGGC----AATA
gi|17 : AAAATACTTATA-TACAAAA---TTCGTAAATACTG---CTAT------TGTATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAACATTAGCAATATACTTCCTGTG---TGT---------GTATAAGAGTCATT----ATGG--A--GTA--------------GT-------------TATGAT--------------A--------------A-ACAT-
gi|18 : AAAGTAATTATA--AAAAAA---ATCGTAAATACgtta
gi|18 : gACAAAATATAAGCAAAATATTCCCTGTG---TATTTA------ATAT---TGTCAGT----ATGG--ACGGTA--------------GT-------------TGTGGT--------------A--------------A-ATcgattgaagtacaaaatataagcaaaatattccctgtgtatttaatattgtcagtatggacggtagttgtggtaaatgcgttataaatacaa
gi|19 : gaaagtaattataaaaaaaatcgtaaataccgattgaagtAAAGTGATGATA-TACACAC---TTTGTAAATACTA---CTAT-------ATATACATAGGTTTA------CTATGAAGTACAAAATACTGACAAAATATTAG-AAAATATTCACTGTG---TATTTA------ATAgcgttataaatacaa
gi|2 : AGTAATTATA-TACAAAA---TTCATAAATACT----CTAT------TATATACATAGGTTAA------ATATGAAGTACAAAATCCTGACAAAATATAAGTAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATACTATTTTACGAAAACAAGATATTT-CTTCTTTTTAATAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGT-TTTTTCATCTTCTG----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCATCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTGgt
gi|20 : cCATAGGTTAA------CTGTGAAGTACAATAGGCTGACAAAACATTAGCAAAATATTCCCCGTG---TATTTG------ACAG---TGTCAGT----ATGG--ACACTA--------------GG-------------T---AT--------------A--------------A-GTAT-A------
gi|21 : TGTAAGCATTATCTACAGGTAAATCTCTGAAATTGTTTTTTCGCAGGCTATTATACAGTTCACACTGAAATAGAAA
gi|3 : aAAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGTG---TATCCA------ATAT---TGTCAGC----ATGG--AGTATA--------------GTATGATAGATATGTT---AT--------------A--------------C-ATAT-A------ATAGGAA-AACAGGC----AATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTT-CTTCTTTTTAAGAAAACACAGACAAGAAAC-TTTGCAAGTTGTCTTAGATGCGCTGATATGATATGTGCTAGTCGTTGGTTTACATGTATGTAAACATTATTTACAAATAAATCTCTGGAATTGTTTTCTCGCAGGTCATTACACAGTTAACACTGAAATAGAAAGTGTTTT-CATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCACTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAGGCGATGCGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTGtatatgttacca
gi|4 : AAAGTAATTATA-TTCAAAA---TTCGTAAATACT----CTAC------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTAAG---TATCCA------ATAG---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AACATATCATACATAAAAAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAGAAATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAA--------AGTTGTCTTGGATGCGCTGATATGATATATACATGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAACTTGTTTTCTCGCAGATCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAGTTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATATAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTTTCAGTTTTGATATACTTTGA-AGGTCTTC
gi|5 : TA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATAGCATGCATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAGCAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCTTTGGTTGATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTACTCGCAGGTTATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGGCAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGTGTGGTAAGATACCAGTTTTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|6 : AAGTAATTATA-TACAAAA---TTCGTAAAACCT----CTAT------TATATACATATGTTAAGTTAAACTATGACGTACAAAGTGCTGATAACATATTAGCAATATATTCCCTGAA---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------G--------------ATATAT-GTGTTACATATGAA-AACAGGC----AATATATCATATATCAACAATACATGAGGTATTAAATCTAACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAA-TGTGTAAGTCGTCATGAATGCGCTGATATAATATGTGGAAGTCGCTGGTTTATATGCATGTAAGCATCTTTTACAAATACATCGCTGGA-----------------CATTATACAGTTCACACTGAAATAGAAAGTGTTTCTCATCTTCTA----CTGAATTTGACTG---------ACAAA---GTCTCTGATCAGGTTGTTCCTCAACGTACTTTTCGGTTTCATTTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGTGTTTAT-TCTTGTTTAAGTTCATCATAACGTAATCATCGCATTTAAAGTTTTCCTTAAACAGGCGGTATGTTCTC-TTTCCGATATACTTTGA-ACGTCTTCT
gi|7 : AAGTAATTATA-TACAAAA---TTCGTAAATACT----TGAT------TATATACATAGGTTAA------ATATGACGTACAAATTTCTGACAAAATATTAGTAAAATATTCTCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--GGTGTA--------------GT-------------T---ATGATAGATATGTTGTA--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATAAGGTATTAAGTCTGACATAATAGTTTGCGAAAACAAGATATTT-CTTCTTTTTATGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGCATTATTTACAAATAATTCTCTGAAATTTTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAAAAAGCGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCTGTTTCAATTCTGAGTGGTAAGACACCAGTTCTGAATTGACACAATACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTTACATTTAAAGTTTTCATTAAACAGGCGATATa
gi|8 : AAAGTAATTATG-TACAACA---TTCTTATAAACT----CTAT------TATATACATAGGTTAA------ATATGACGTACACAATCCTAACAAAATATTAGTACAATATTCCATGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTATTTATGATAGATATGT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATACCATACATCAACAATACATGAGGTATTTAGTCTGACACAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGAAAGTTGTTTTGGATGCGCTGATATGATATGTGGAAGTC--TGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTAACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCTCCAACATACCTTCCGGTTTCAATTCTGAGTCGTAAGATACCAGTTCTGAATTGACAAAATACAGAGCGTTCAT-TCTTGTTTAAATTCATCAT
gi|9 : AAAGTAATTATA-TACAAAC---TGCGTAAATACT----CGAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTACAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGCA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTTAATCTGACATAATAGTTTACGAAAACAAGATATTT-CTTTTTTTTAAGAAAGCACAGTCAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCCGATATGATA-GTGGAAGTCGTTGGTTTATATGCATGTAAGCATTATCTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCCTACTGAAATAGAAAGTGTTTTTCA-CCTCTA----CTGAATTTGACTGACAGAGTCTACAca
Alignments
lowQualScore : 1111 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 2 333 2222 666666 666666 0 0 333 666666 333 4444 33 3333333333333333333333333333333333333333333333333333333333333333 2 2 777777 2 5555 0 3 4 1 8888 777 4 1 5
lowQualScore : . ... .... ...... ...... . . ... ...... ... .... .. ................................................................ . . ...... . .... . . . . .... ... . . .
lowQualScore : 2 999 1111 888888 444444 2 6 777 111111 999 7777 11 6666666666666666666666666666666666666666666666666666666666666666 2 4 222222 7 7777 4 6 0 0 5555 888 4 0 7
consensus : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
Reference ( family-1828 ) : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|1 : AAAGTAATTATA-TACAAAA---GTCGTAAATACT----CTAT------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGAC---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAAATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAACATTTGCAAGTTGTCTTGGGTGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGAACAAGTTGCTCCCCAACATACCTTCCGGCTTCAAGTCTGAGTGGTAAGATACC-GTTCTGATTTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATGTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATAAACTTTGA-ACGTCTTTTG
gi|10 : AAGTAATTATA-TACAAAA---TTTGTAAATACT----CTAT------TATATACATTGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCAGAG---TATCCA------ATAT---TGTCTGT----ATCG--AGTGTA--------------GT-------------T---ATGATAGATATGTTATA--------------A-ATAT-A------ATAAGAA-AA---GC----AATATATCATACATCAACAGTACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTTCTTCTTTTAAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTTTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGTATTATTTACAAATAAACCTCTGAAACTGTTTTCTCGCAGGTCATTATACAGTTCACACTGA
gi|11 : TTATATAAATCACATTCAAGTAAAAAATGTTTCTCATCTTCTGTGGCCTGCAT---A-TCACAGAATCTACAAGTCCGTCTCTCAATAGGTT-CACCC--ACATATCGTTCTGTCCCTATTCGTAACGTTAGCATTCCGGTCCTAAATTGGCAAAGTAACGATCGTTCATGTTTTG-ACAGATTCATAGTTATATAGTTTTCGCACTTAAACTCCGTTTTGAATAATCTGTATGTTCGTAATTTAGGCATA-TTTGATACGT
gi|12 : ttaaaatatcacaaaacatatttgtcctgatattgAGTAATTATA-TATAAAA---TTCTTAAATACT----CTAT------TATATACATAGGTCAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATACTCCCTGAA---TATCCA------GTAT---TGTCAGT----AAGG--ATTGTAGTTATGATAGATATGT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCAAATATCAATAATACATAAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAagtgcaaccacttgtctctataatgttgggttattaa
gi|13 : AGTAATTATA-TACATAA---TTCGTAAAAACTGCTGCTAT------TATATACATATTTTAA------CTAAAATGTACAGCATGCTGATAAATTATTAGCAAAATATTCCCTGTGCCATATGTATTGTTGATAT---TAACAGTGGTCATGATAAGTACA--------------GT-----------------AT--------------A--------------A-ATAC-A------ATAAGAA-TACAGGC----AGTATATCATACATCAACAATACATGAAATGGTTAGTCTTACATGATAGTTTttaa
gi|14 : cGTAATTATA-TACTAAA---TTAGTAAATACTG---CTATAACATGTGTATACATGGGTTAA------CTATGAAGTACAAAATGCTGACAAAATATTAGCAAAATAATTTCTGTG---TATTTA------AAAG---TATTTAC----ATGT--TATACA--------------AT-------------T---GT--------------T--------------A-ATATGG------ACAGTAATAATGGTG----AGTAT---ATATATCAACAACATGTGAACTATT
gi|15 : AATTATAATATAAAAATATTCGTAAATACT----CTAT------TATATAAGTAAGTTAA------CTATAAAGGACAAAATCATAACAAAATAACAGCAAAATATTTCCTGAG---TATTCA------ATAT---TGTCAGT----TTTA--TATATAT-------------TT-------------T---AT--------------A--------------A-ATAC-A------ATAGGAA-AACTAGTATTAAATATACCATAGAACAA-ACTA---GAGGTTTT
gi|16 : AAAGTAATTATA-TACAAAA---TTCGTAAATATC----CTAT------CATATACATAGGTAAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TTTAAA------ATAT---TGTCAGT----ATGA--AGTATA--------------GT-------------T---AT--------------GATAGATGTGTTATTA-ATAT-A------ATAGGAA-AACAGGC----AATA
gi|17 : AAAATACTTATA-TACAAAA---TTCGTAAATACTG---CTAT------TGTATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAACATTAGCAATATACTTCCTGTG---TGT---------GTATAAGAGTCATT----ATGG--A--GTA--------------GT-------------TATGAT--------------A--------------A-ACAT-
gi|18 : AAAGTAATTATA--AAAAAA---ATCGTAAATACgtta
gi|18 : gACAAAATATAAGCAAAATATTCCCTGTG---TATTTA------ATAT---TGTCAGT----ATGG--ACGGTA--------------GT-------------TGTGGT--------------A--------------A-ATcgattgaagtacaaaatataagcaaaatattccctgtgtatttaatattgtcagtatggacggtagttgtggtaaatgcgttataaatacaa
gi|19 : gaaagtaattataaaaaaaatcgtaaataccgattgaagtAAAGTGATGATA-TACACAC---TTTGTAAATACTA---CTAT-------ATATACATAGGTTTA------CTATGAAGTACAAAATACTGACAAAATATTAG-AAAATATTCACTGTG---TATTTA------ATAgcgttataaatacaa
gi|2 : AGTAATTATA-TACAAAA---TTCATAAATACT----CTAT------TATATACATAGGTTAA------ATATGAAGTACAAAATCCTGACAAAATATAAGTAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATACTATTTTACGAAAACAAGATATTT-CTTCTTTTTAATAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGT-TTTTTCATCTTCTG----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCATCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTGgt
gi|20 : cCATAGGTTAA------CTGTGAAGTACAATAGGCTGACAAAACATTAGCAAAATATTCCCCGTG---TATTTG------ACAG---TGTCAGT----ATGG--ACACTA--------------GG-------------T---AT--------------A--------------A-GTAT-A------
gi|21 : TGTAAGCATTATCTACAGGTAAATCTCTGAAATTGTTTTTTCGCAGGCTATTATACAGTTCACACTGAAATAGAAA
gi|3 : aAAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGTG---TATCCA------ATAT---TGTCAGC----ATGG--AGTATA--------------GTATGATAGATATGTT---AT--------------A--------------C-ATAT-A------ATAGGAA-AACAGGC----AATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTT-CTTCTTTTTAAGAAAACACAGACAAGAAAC-TTTGCAAGTTGTCTTAGATGCGCTGATATGATATGTGCTAGTCGTTGGTTTACATGTATGTAAACATTATTTACAAATAAATCTCTGGAATTGTTTTCTCGCAGGTCATTACACAGTTAACACTGAAATAGAAAGTGTTTT-CATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCACTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAGGCGATGCGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTGtatatgttacca
gi|4 : AAAGTAATTATA-TTCAAAA---TTCGTAAATACT----CTAC------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTAAG---TATCCA------ATAG---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AACATATCATACATAAAAAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAGAAATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAA--------AGTTGTCTTGGATGCGCTGATATGATATATACATGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAACTTGTTTTCTCGCAGATCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAGTTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATATAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTTTCAGTTTTGATATACTTTGA-AGGTCTTC
gi|5 : TA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATAGCATGCATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAGCAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCTTTGGTTGATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTACTCGCAGGTTATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGGCAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGTGTGGTAAGATACCAGTTTTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|6 : AAGTAATTATA-TACAAAA---TTCGTAAAACCT----CTAT------TATATACATATGTTAAGTTAAACTATGACGTACAAAGTGCTGATAACATATTAGCAATATATTCCCTGAA---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------G--------------ATATAT-GTGTTACATATGAA-AACAGGC----AATATATCATATATCAACAATACATGAGGTATTAAATCTAACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAA-TGTGTAAGTCGTCATGAATGCGCTGATATAATATGTGGAAGTCGCTGGTTTATATGCATGTAAGCATCTTTTACAAATACATCGCTGGA-----------------CATTATACAGTTCACACTGAAATAGAAAGTGTTTCTCATCTTCTA----CTGAATTTGACTG---------ACAAA---GTCTCTGATCAGGTTGTTCCTCAACGTACTTTTCGGTTTCATTTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGTGTTTAT-TCTTGTTTAAGTTCATCATAACGTAATCATCGCATTTAAAGTTTTCCTTAAACAGGCGGTATGTTCTC-TTTCCGATATACTTTGA-ACGTCTTCT
gi|7 : AAGTAATTATA-TACAAAA---TTCGTAAATACT----TGAT------TATATACATAGGTTAA------ATATGACGTACAAATTTCTGACAAAATATTAGTAAAATATTCTCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--GGTGTA--------------GT-------------T---ATGATAGATATGTTGTA--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATAAGGTATTAAGTCTGACATAATAGTTTGCGAAAACAAGATATTT-CTTCTTTTTATGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGCATTATTTACAAATAATTCTCTGAAATTTTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAAAAAGCGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCTGTTTCAATTCTGAGTGGTAAGACACCAGTTCTGAATTGACACAATACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTTACATTTAAAGTTTTCATTAAACAGGCGATATa
gi|8 : AAAGTAATTATG-TACAACA---TTCTTATAAACT----CTAT------TATATACATAGGTTAA------ATATGACGTACACAATCCTAACAAAATATTAGTACAATATTCCATGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTATTTATGATAGATATGT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATACCATACATCAACAATACATGAGGTATTTAGTCTGACACAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGAAAGTTGTTTTGGATGCGCTGATATGATATGTGGAAGTC--TGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTAACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCTCCAACATACCTTCCGGTTTCAATTCTGAGTCGTAAGATACCAGTTCTGAATTGACAAAATACAGAGCGTTCAT-TCTTGTTTAAATTCATCAT
gi|9 : AAAGTAATTATA-TACAAAC---TGCGTAAATACT----CGAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTACAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGCA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTTAATCTGACATAATAGTTTACGAAAACAAGATATTT-CTTTTTTTTAAGAAAGCACAGTCAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCCGATATGATA-GTGGAAGTCGTTGGTTTATATGCATGTAAGCATTATCTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCCTACTGAAATAGAAAGTGTTTTTCA-CCTCTA----CTGAATTTGACTGACAGAGTCTACAca
blockSeqs : A ATA GCTG AACATG GTTAAA CCA TTGTTG AAG GGTC TA GTTATGATAGATATGTTATA T G TGTTAC T ATTA T . A TGGC TCC G T T
blockSeqs : . . G . . . . . . . GTTATGATAGATATGTTATA . . . . . . . T . . . A .
blockSeqs : . . G . . . . . . . GTTATGATAGATGTGTTATT . . . . . . . A . . . C .
blockSeqs : . . A . . . . . . . GTTATGATAGATATGTTGTA . . . . . . . T . . . A .
blockSeqs : . . . . . . . . . . TTTATGATAGATATGTTATA . . . . . . . T . . . A .
blockSeqs : . . . . . . . . . . GTATGATAGATATGTTATA . . . . . . . A . . . C .
blockSeqs : . . . . . . . . . . GTTATGATA . . . . . . . A . . . C
blockSeqs : . . . . . . . . . . GTTGTGGTA . . . . . . . T . . .
blockSeqs : . . . . . . . . . . TTTTATA . . . . . . . A .
blockSeqs : . . . . . . . . . . ATTGTT . . . . . .
blockSeqs : . . . . . . . . . . GTTATA . . . . .
blockSeqs : . . . . . . . . . . GGTATA . . . . .
blockSeqs : . . . . . . . . . . GTTATA . . . . .
blockSeqs : . . . . . . . . . . GTTATA . . . . .
blockSeqs : . . . . . . . . . . GTTATG . . .
blockSeqs : . . . . . . . . . . GTTATA . .
blockSeqs : . . . . . . . . GTATA .
blockSeqs : . .
blockSeqCons :
originalCons : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
finalCons : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
Alignments
lowQualScore : 1111 4444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 2 333 2222 666666 666666 0 0 333 666666 333 4444 33 3333333333333333333333333333333333333333333333333333333333333333 2 2 777777 2 5555 0 3 4 1 8888 777 4 1 5
lowQualScore : . ... .... ...... ...... . . ... ...... ... .... .. ................................................................ . . ...... . .... . . . . .... ... . . .
lowQualScore : 2 999 1111 888888 444444 2 6 777 111111 999 7777 11 6666666666666666666666666666666666666666666666666666666666666666 2 4 222222 7 7777 4 6 0 0 5555 888 4 0 7
consensus : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
Reference ( family-1828 ) : AAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCNTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAANAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|1 : AAAGTAATTATA-TACAAAA---GTCGTAAATACT----CTAT------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGAC---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAAATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAACATTTGCAAGTTGTCTTGGGTGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGAACAAGTTGCTCCCCAACATACCTTCCGGCTTCAAGTCTGAGTGGTAAGATACC-GTTCTGATTTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATGTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATAAACTTTGA-ACGTCTTTTG
gi|10 : AAGTAATTATA-TACAAAA---TTTGTAAATACT----CTAT------TATATACATTGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCAGAG---TATCCA------ATAT---TGTCTGT----ATCG--AGTGTA--------------GT-------------T---ATGATAGATATGTTATA--------------A-ATAT-A------ATAAGAA-AA---GC----AATATATCATACATCAACAGTACATGAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTTTCTTCTTTTAAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTTTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGTATTATTTACAAATAAACCTCTGAAACTGTTTTCTCGCAGGTCATTATACAGTTCACACTGA
gi|11 : TTATATAAATCACATTCAAGTAAAAAATGTTTCTCATCTTCTGTGGCCTGCAT---A-TCACAGAATCTACAAGTCCGTCTCTCAATAGGTT-CACCC--ACATATCGTTCTGTCCCTATTCGTAACGTTAGCATTCCGGTCCTAAATTGGCAAAGTAACGATCGTTCATGTTTTG-ACAGATTCATAGTTATATAGTTTTCGCACTTAAACTCCGTTTTGAATAATCTGTATGTTCGTAATTTAGGCATA-TTTGATACGT
gi|12 : ttaaaatatcacaaaacatatttgtcctgatattgAGTAATTATA-TATAAAA---TTCTTAAATACT----CTAT------TATATACATAGGTCAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATACTCCCTGAA---TATCCA------GTAT---TGTCAGT----AAGG--ATTGTAGTTATGATAGATATGT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCAAATATCAATAATACATAAGGTATTAAGTCTGACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAagtgcaaccacttgtctctataatgttgggttattaa
gi|13 : AGTAATTATA-TACATAA---TTCGTAAAAACTGCTGCTAT------TATATACATATTTTAA------CTAAAATGTACAGCATGCTGATAAATTATTAGCAAAATATTCCCTGTGCCATATGTATTGTTGATAT---TAACAGTGGTCATGATAAGTACA--------------GT-----------------AT--------------A--------------A-ATAC-A------ATAAGAA-TACAGGC----AGTATATCATACATCAACAATACATGAAATGGTTAGTCTTACATGATAGTTTttaa
gi|14 : cGTAATTATA-TACTAAA---TTAGTAAATACTG---CTATAACATGTGTATACATGGGTTAA------CTATGAAGTACAAAATGCTGACAAAATATTAGCAAAATAATTTCTGTG---TATTTA------AAAG---TATTTAC----ATGT--TATACA--------------AT-------------T---GT--------------T--------------A-ATATGG------ACAGTAATAATGGTG----AGTAT---ATATATCAACAACATGTGAACTATT
gi|15 : AATTATAATATAAAAATATTCGTAAATACT----CTAT------TATATAAGTAAGTTAA------CTATAAAGGACAAAATCATAACAAAATAACAGCAAAATATTTCCTGAG---TATTCA------ATAT---TGTCAGT----TTTA--TATATAT-------------TT-------------T---AT--------------A--------------A-ATAC-A------ATAGGAA-AACTAGTATTAAATATACCATAGAACAA-ACTA---GAGGTTTT
gi|16 : AAAGTAATTATA-TACAAAA---TTCGTAAATATC----CTAT------CATATACATAGGTAAA------CTATGACGTACAAAATCCTGACAAAATATTAGCAAAATATTCCCTGAG---TTTAAA------ATAT---TGTCAGT----ATGA--AGTATA--------------GT-------------T---AT--------------GATAGATGTGTTATTA-ATAT-A------ATAGGAA-AACAGGC----AATA
gi|17 : AAAATACTTATA-TACAAAA---TTCGTAAATACTG---CTAT------TGTATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAACATTAGCAATATACTTCCTGTG---TGT---------GTATAAGAGTCATT----ATGG--A--GTA--------------GT-------------TATGAT--------------A--------------A-ACAT-
gi|18 : AAAGTAATTATA--AAAAAA---ATCGTAAATACgtta
gi|18 : gACAAAATATAAGCAAAATATTCCCTGTG---TATTTA------ATAT---TGTCAGT----ATGG--ACGGTA--------------GT-------------TGTGGT--------------A--------------A-ATcgattgaagtacaaaatataagcaaaatattccctgtgtatttaatattgtcagtatggacggtagttgtggtaaatgcgttataaatacaa
gi|19 : gaaagtaattataaaaaaaatcgtaaataccgattgaagtAAAGTGATGATA-TACACAC---TTTGTAAATACTA---CTAT-------ATATACATAGGTTTA------CTATGAAGTACAAAATACTGACAAAATATTAG-AAAATATTCACTGTG---TATTTA------ATAgcgttataaatacaa
gi|2 : AGTAATTATA-TACAAAA---TTCATAAATACT----CTAT------TATATACATAGGTTAA------ATATGAAGTACAAAATCCTGACAAAATATAAGTAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTAAGTTTGACATACTATTTTACGAAAACAAGATATTT-CTTCTTTTTAATAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATATGCAAGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGT-TTTTTCATCTTCTG----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCATCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTGgt
gi|20 : cCATAGGTTAA------CTGTGAAGTACAATAGGCTGACAAAACATTAGCAAAATATTCCCCGTG---TATTTG------ACAG---TGTCAGT----ATGG--ACACTA--------------GG-------------T---AT--------------A--------------A-GTAT-A------
gi|21 : TGTAAGCATTATCTACAGGTAAATCTCTGAAATTGTTTTTTCGCAGGCTATTATACAGTTCACACTGAAATAGAAA
gi|3 : aAAAGTAATTATA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGTG---TATCCA------ATAT---TGTCAGC----ATGG--AGTATA--------------GTATGATAGATATGTT---AT--------------A--------------C-ATAT-A------ATAGGAA-AACAGGC----AATATATCATAAATCAATACTACATGAGGTATTA-------------------CGAAAACAAGGTATTT-CTTCTTTTTAAGAAAACACAGACAAGAAAC-TTTGCAAGTTGTCTTAGATGCGCTGATATGATATGTGCTAGTCGTTGGTTTACATGTATGTAAACATTATTTACAAATAAATCTCTGGAATTGTTTTCTCGCAGGTCATTACACAGTTAACACTGAAATAGAAAGTGTTTT-CATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCACTGATCAGGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGCAAGATACTAGTTCTAAATTGACACAAAACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAATGTAATCCTCACATTTAAAATTTTCCTTAAACAGGCGATGCGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTGtatatgttacca
gi|4 : AAAGTAATTATA-TTCAAAA---TTCGTAAATACT----CTAC------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTAAG---TATCCA------ATAG---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AACATATCATACATAAAAAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAACAAGAAATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAA--------AGTTGTCTTGGATGCGCTGATATGATATATACATGTCGTTGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAACTTGTTTTCTCGCAGATCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAGTTTGACTGACAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATATAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTTTCAGTTTTGATATACTTTGA-AGGTCTTC
gi|5 : TA-TACAAAA---TTCGTAAATACT----CTAT------TATATACATAGGTTAA------ATATGACGTACAAAATCCTGACAAAATATTAGTAAAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATAGCATGCATCAACAATACATGAGGTATTAAGTTTGACATAATATTTTACGAAAGCAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCTTTGGTTGATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTACTCGCAGGTTATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTGGCAAAGTCTACAAA---GTCTCTGATCAAGTTGCTCCCCAACATACCTTCCGGTTTCAATTCTGTGTGGTAAGATACCAGTTTTGAATTGACACAATACAGAGCGTTCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTCACATTTAAAGTTTTCCTTAAAAAGGCGATATGTTCTCAGTTTTGATATACTTTGA-ACGTCTTCTG
gi|6 : AAGTAATTATA-TACAAAA---TTCGTAAAACCT----CTAT------TATATACATATGTTAAGTTAAACTATGACGTACAAAGTGCTGATAACATATTAGCAATATATTCCCTGAA---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTA--------------GT-------------T---AT--------------G--------------ATATAT-GTGTTACATATGAA-AACAGGC----AATATATCATATATCAACAATACATGAGGTATTAAATCTAACATAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAA-TGTGTAAGTCGTCATGAATGCGCTGATATAATATGTGGAAGTCGCTGGTTTATATGCATGTAAGCATCTTTTACAAATACATCGCTGGA-----------------CATTATACAGTTCACACTGAAATAGAAAGTGTTTCTCATCTTCTA----CTGAATTTGACTG---------ACAAA---GTCTCTGATCAGGTTGTTCCTCAACGTACTTTTCGGTTTCATTTCTGAGTGGTAAGATACCAGTTCTGAATTGACACAATACAGAGTGTTTAT-TCTTGTTTAAGTTCATCATAACGTAATCATCGCATTTAAAGTTTTCCTTAAACAGGCGGTATGTTCTC-TTTCCGATATACTTTGA-ACGTCTTCT
gi|7 : AAGTAATTATA-TACAAAA---TTCGTAAATACT----TGAT------TATATACATAGGTTAA------ATATGACGTACAAATTTCTGACAAAATATTAGTAAAATATTCTCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--GGTGTA--------------GT-------------T---ATGATAGATATGTTGTA--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATAAGGTATTAAGTCTGACATAATAGTTTGCGAAAACAAGATATTT-CTTCTTTTTATGAAAGCACAGACAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCTGATATGATATGTGCAAGTCGTTGGTTTATATGCATGTAAGCATTATTTACAAATAATTCTCTGAAATTTTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAAAAAGCGTTTTTCATCTTCTA----CTGAATTTGACTGACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCCCCAACATACCTTCCTGTTTCAATTCTGAGTGGTAAGACACCAGTTCTGAATTGACACAATACAGAGCGTCCAT-TCTTGTTTAAGTTCATCATAACGTAATCCTTACATTTAAAGTTTTCATTAAACAGGCGATATa
gi|8 : AAAGTAATTATG-TACAACA---TTCTTATAAACT----CTAT------TATATACATAGGTTAA------ATATGACGTACACAATCCTAACAAAATATTAGTACAATATTCCATGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGTATTTATGATAGATATGT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATACCATACATCAACAATACATGAGGTATTTAGTCTGACACAATAGTTTACGAAAACAAGATATTT-CTTCTTTTTAAGAAAGCACAGACAAGAAAC-TTTGAAAGTTGTTTTGGATGCGCTGATATGATATGTGGAAGTC--TGGTTTATATGCTTGTAAGCATTATTTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCACACTGAAATAGAAAGTGTTTTTCATCTTCTA----CTGAATTTGACTAACAAAGTCTACAAA---GTCTCTGATCAGGTTGCTCTCCAACATACCTTCCGGTTTCAATTCTGAGTCGTAAGATACCAGTTCTGAATTGACAAAATACAGAGCGTTCAT-TCTTGTTTAAATTCATCAT
gi|9 : AAAGTAATTATA-TACAAAC---TGCGTAAATACT----CGAT------TATATACATAGGTTAA------CTATGACGTACAAAATCCTGACAAAATATTAGTACAATATTCCCTGAG---TATCCA------ATAT---TGTCAGT----ATGG--AGTGCA--------------GT-------------T---AT--------------A--------------A-ATAT-A------ATAGGAA-AACAGGC----AATATATCATACATCAACAATACATGAGGTATTTAATCTGACATAATAGTTTACGAAAACAAGATATTT-CTTTTTTTTAAGAAAGCACAGTCAAGAAAC-TTTGCAAGTTGTCTTGGATGCGCCGATATGATA-GTGGAAGTCGTTGGTTTATATGCATGTAAGCATTATCTACAAATAAATCTCTGAAATTGTTTTCTCGCAGGTCATTATACAGTTCCTACTGAAATAGAAAGTGTTTTTCA-CCTCTA----CTGAATTTGACTGACAGAGTCTACAca