lowQualScore : 11 1 1 111 1
lowQualScore : 1 1 444444 555555555 3333 7 1 1 1 66 7 22 3 0 3 2 000 55 8888 3 2 444 4 2 5 3333 5
lowQualScore : . . ...... ......... .... . . . . .. . .. . . . . ... .. .... . . ... . . . .... .
lowQualScore : 5 5 000000 999999999 1111 4 6 7 5 00 0 33 1 9 5 5 000 00 4444 3 9 666 9 7 1 5555 0
consensus : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-ATACAC--ATGGC-GTATCA-ATT-AAAC--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATT
Reference ( gi|3 ) : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGACCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATG--GATA--CTAT-CAACCTGTA-ATATAC--ATAAC-GTATCA-ATT-AAAC--TGAAGATATTTTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCTATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGAAAATTACCAATT
gi|5 : GAACACCTTGGCTA-TT-ACTAAGTAATAACC------TCGGAACTAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TGACACATGGCCGGA-CTACATTCAAAATG-------------------GTA-ATATAC--ATAAC-GTATCA-ATT-AAAC--TGAAGATGTTCTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACAATAATAACGGGAAATAACTTGCCGGGGCAAATTACCAA
gi|13 : gGAACACCTTGGCTA-TT-ACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCGGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGC--AATTTACAT----AACG---------TAT-CA------------------------ATTA-ACT-GAA-------GATATTCTGCAATGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTTAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATT
gi|4 : gGAACACCTTGGCTC-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAG-TAACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAAAACATGCTCATTAT-GTTT---ACT-AAAGAATAGAGACATGT-ATAATG--------------TTATTGGCAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATT
gi|21 : caGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCTGGCCTTTCTG----GTAATAAACATAACGTAT
gi|17 : cgGAACACCTTGGCTA-TT-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAATACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGATA--TTCTGCAACcaattaaactgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcaaaaagtcagccatttttgtttacgataataacgagaagtaacttgccgcggcaaattaccaattg
gi|18 : gGAACACCTTGGCTA-TA-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGATA--TTCTGCAACgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtctaaagaatactgaagaacgtcgaaaagtcaaccatttttgtttacgatgataacgggaagtaacttgccggggcaaattaccaattg
gi|15 : cgGAACACCTTTGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGAAGATA--TTCTGCAACgcttcaagctgctcttttttcaaagaatgtttgatttccattatgtccaaagaataccgaatgcacgtcgaaaagtcagccatttttgtttacgataataacaggaaataacttgccggggcagttatta
gi|12 : GAACACCTTGGCTA-TA-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGCCATTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTgcttcaagctgctcttttttcaaagaatgtttaatttccataatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|14 : cgGAACACCATGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATGCGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGAACCAGAC-TTACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTgaagatattctgcaacacttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccactt
gi|10 : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATTGCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-Agaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataaatggaagtaacttgccggggcaaattaccaatt
gi|8 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGC---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-Aacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcagccatttttgtttacgataataacgggaagtaactttccggggcaaattaccaattg
gi|7 : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----ACCATATTGCTGTGACCCG-CCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTATATTCAAAATG--GAGA--CTAT-CAACCTGAA-Aacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaggctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|9 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG----------CC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGTCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-Aacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtagaaaagtcagccatttttgtttacgataataacgggaagtaacttgccagggcaaattaccaattg
gi|2 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATATGGGG---------GCCGGCCGCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-A---AC--ATatgtgctcattatgtttactaaagaatagagacatgtataatgttattgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttttttgtttacgataataacggaaagtaacttgccggggcaaattaccaattg
gi|6 : tgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGAAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGTCTTTCTGCATAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-Agctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaattaatttgtttccattatgtccaaagaattctgaatgcacatcgaaaagtcagccatttttgtttacgataataatgggaagtagcttgccggggcaaattaccaattg
gi|25 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATGATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACATGAC-TAACACATAGCCGGA-CTACATTCAAAATGAAGATA--TTCTGCAACacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccttttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|1 : gGAACACCTTCGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGGAGGGGGGGGGGC----GCCATATTGCTGGGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATA--GAGA--CTAT-CAACCTGAA-Agcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaaagcacgtcgaaaagtcagccatttttgtttacgataataacgggaagt
gi|26 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACACGGCCTTTCTGCCGAGTATCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGATA--TTCTGCAACacgtgctcattatgtttactaaagaatagagacatgtttaatgttattggcagtaaaagctttggattaatttgtttccattatgtctaaagaatacttaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttaccggggcaaattaccaattg
gi|28 : cgGAATACATTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagcc
gi|31 : cgGAACACCTTGGTTA-TTTACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCAT
gi|34 : gGAATACCTTGGCTA-TT-ACTACGTAATAACC------
gi|33 : ctcgGAACACCTTGGTTATTT-ACTACGTTATTATCCGAGTATCGGAGAT
gi|20 : tcgCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGATATTCT-T-CAACc
gi|11 : TGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-Agtttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaaaactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|16 : GGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATACTACTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGC---------------AAT----ATA--C--------------ATA-AC--GTA------TCA-ATT-AAAC--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTTTTTTAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGTACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaatctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|19 : A-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGTCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTAAAAATG--GAGA--CTTT-CAACCTGAA-A
gi|23 : TACGTAATAACC------TCGGAAA--GTACGGGG---------GCC----GCAATATTGCTGTGACCCGGCCTCTCTGCCGAGTACCAGAC-TAACACATGGCCGTA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-Aacgtgctcattatgtttacttaagaatataaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|24 : AATAACC------TCGGAAATAATACGGGG---------GCC----TCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACATATGGCCGGA-CTACATTCAAAATGAAGATA--TTCTGCAACacgtgcttattatgtttacttaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgattttcgtttacgataataacgggaagtaacttgccggggcaaactacaa
gi|22 : ACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTATGACCCGGCTTTTCTGCCTAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATG--GAGA--CTAT-CAACCTGAA-Agttccaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|21 : GTA-ATAAAC--ATAAC-GTATCA-ATT-AAAC--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTGTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCAAAAAGTCAGCCATTTT----TGTTTACGATAATAACGAGAAGTAACTTGCCGCGGCAAATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccatttttgttcatgataataacgggaagtaatttgccggggcaaattaccagtt
gi|20 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacctggcctttctgACAC--ATGGC-GTATCA-ATT-AAAC--TGAAGATATTCTTCAACGTTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAAAACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATTg
gi|17 : cttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaACAC--ATGGC-GTATCA-ATT-AAAC--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCTAAAGAATACTGAA-GAACGTCGAAAAGTCAACCATTTT----TGTTTACGATGATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATT
gi|18 : ggaacaccttggctattactacataataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgaataccagactaACAC--ATGGC-GTATCA-ATT-AAAC--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTGATTTCCATTATGTCCAAAGAATACCGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACAGGAAATAACTTGCCGGGGg
gi|25 : cggaacaccttggctataactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaACAC--ATAGCCGGACTACATTCAAAA--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAAAGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTcagttatta
gi|26 : ggaacaccttggctattactacgtaataacctcggaaatgatacgggggccgccatattgctgtgacccggcctttctgccgagtacatgactaACAC--ATGGC-GTATCA-ATT-AAAC--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCC
gi|15 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacacggcctttctgccgagtatcagactaCA-TTC-AAAA--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATAATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATT
gi|24 : gaacacctttgctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaacacatggccggactaCA-TTC-AAAA--TGAAGATATTCTGCAACGTTCCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATT
gi|12 : aataacctcggaaataatacgggggcctccatattgctgtgacccggcctttctgccgagtaccagactaacatatggccggacta-AGAC--TGAAGATATTCTGCAACACTTCAAGCTGCTCTTTTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCACTTg
gi|14 : cggaacaccttggctataactacataataacctcggaaataatacgggggccgccatattgctgtgactcggccattctgccgagtaccagactaacacatggccggactacattcaaaatgg-AGAC--TGAAGATATTCTGCAACGCTTCAAGCTGCTCTTGTTTCAAAGA-ATGTTTAATTTCCATTATGTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAAATGGAAGTAACTTGCCGGGGCAAATTACCAATT
gi|9 : gaacaccatggctattactacgtaataacctcggaaataatgcgggggccgccatattgctgtgacccggcctttctgccgagaaccagacttacacatggccggactacattcaaaatggAGAGACATGTATAATGT-TATT--GTCCAAAGAATACTGAATGCACGTCGAAAAGTCAGCCATTTTTTTTTGTTTACGATAATAACGGAAAGTAACTTGCCGGGGCAAATTACCAATT
gi|2 : cggaacaccttggctattactacgtaataacctcggaaataatacggggccgccatattgctgtgacccggcctttctgccgagtaccagactaacacatgtccggactacattcaaaatggagactatcaacctgaaaatgtgctcattatgtttactaaagaatTTTCCATTATGTCCAAAGAATTCTGAATGCACATCGAAAAGTCAGCCATTTT----TGTTTACGATAATAATGGGAAGTAGCTTGCCGGGGCAAATTACCAATTg
gi|1 : tggaacaccttggctattactacgtaataacctcggaaataatatgggggccggccgccatattgctgtgacccggcctttctgccgagtaccagactaacacatggccagactacattcaaaatggagactatcaacctgaaaacatgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaattaatttgTTTCCATTATGTCTAAAGAATACTTAATGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTACCGGGGCAAATTACCAATTg
gi|8 : ggaacaccttcgctattactacgtaataacctcggaaataatacggggaggggggggggcgccatattgctgggacccggcctttctgccgagtaccagactaacacatggccggactacattcaaaatagagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtttaatgttattggcagtaaaagctttggattaatttgTGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATTg
gi|7 : gaacaccttggctattactacgtaataacctcggaaataatacgggcgccgccatattgctgtgacccggcctttctgccgagtaccagactaacacatggccggactacattcaaaatggagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaggctttgaaataaagccTGCACGTAGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCAGGGCAAATTACCAATT
gi|11 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccaccatattgctgtgacccgcctttctgccgagtaccagactaacacatggccggactatattcaaaatggagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagccTGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATTg
gi|6 : tggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaacacatggccggactacattcaaaatggagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaatctttgaaataaagccTGCACGTCGAAAAGTCAGCCTTTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATTg
gi|22 : cggaacaccttggctattactacgtaataacctcgaaaataatacgggggccgccatattgctgtgactcggtctttctgcatagtaccagactaacacatggccggactacattcaaaatggagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagccTGCACGTCGAAAAGTCAGCCATTTT----TGTTCATGATAATAACGGGAAGTAATTTGCCGGGGCAAATTACCAGTTg
gi|10 : acctcggaaataatacgggggccgccatattgctatgacccggcttttctgcctagtaccagactaacacatggccggactacattcaaaatggagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagccGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTTCCGGGGCAAATTACCAATT
gi|19 : ggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaacacattgccggactacattcaaaatggagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAATTACCAATTg
gi|23 : attactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggtctttctgccgagtaccagactaacacatggccagactacattaaaaatggagactttcaacctgaaaacgtgctcattatgtttacttaagaatataaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgATTTT----CGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAAACTAC
gi|27 : tacgtaataacctcggaaagtacgggggccgcaatattgctgtgacccggcctctctgccgagtaccagactaacacatggccgtactacattcaaaatggagactatcaacctgaaaacgtgcttattatgtttacttaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgTAACAGGAAATAACTTGCCGGGGaa
gi|35 : AGTAACTTGCCGGGGCAAATTACCAATTcagttattatccgagcatgccggagatcgccgagtagttacgaacg
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|29 ): GTGTATTCCTACAATTATTTATGAGGTTATTATCCCAGCATGCCGGAGATCGCCGAGTAGTT
Unaligned ( gi|30 ): GTGTATTCCTACAATTATTTACAAGGTTATTATCTGCGCATGCCGGAGATCGCCGAGT
Unaligned ( gi|32 ): GTGTATTCCTACAATTATTTACGAGGTTATTATCCAAGCATGCCGGAGATCGCCG
Alignments
lowQualScore : 1 2222222222222222222 1 1 111 11 33333333 11 33333333
lowQualScore : 1 1 333333 555555555 3333 1 1 1 2 22 7 0 8888888888888888888 5 2 0 4 4 2 0 777 33 1 44444444 3 3 22 11111111 3333 22
lowQualScore : . . ...... ......... .... . . . . .. . . ................... . . . . . . . ... .. . ........ . . .. ........ .... ..
lowQualScore : 5 5 888888 777777777 0000 5 6 6 0 22 3 5 3333333333333333333 0 0 0 5 1 0 0 555 88 9 55555555 8 5 00 55555555 4444 22
consensus : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAATACACATGGCCGGACTACATTC-------AAACTGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
Reference ( family-177 ) : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAATACACATGGC-GTATCA-ATT--------AAACTGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|1 : GAACACCTTCGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGGAGGGGGGGGGGC----GCCATATTGCTGGGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATAG--AGACTATCAACCTGAAA
gi|1 : gTTTCCATTAT-GTCTAAAGAATACT--TAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTACCGGGGCAA--ATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtttaatgttattggcagtaaaagctttggattaatttgtttccattatgtctaaagaatacttaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttaccggggcaaattaccaattg
gi|10 : ggaacaccttcgctattactacgtaataacctcggaaataatacggggaggggggggggcgccatattgctgggacccggcctttctgccgagtaccagactaacacatggccggactacattcaaaatagagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtttaatgttattggcagtaaaagctttggattaatttgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATTGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAAg
gi|10 : gGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTTCCGGGGCAA--ATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcagccatttttgtttacgataataacgggaagtaactttccggggcaaattaccaattg
gi|11 : ggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaacacattgccggactacattcaaaatggagactatcaacctgaaaacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAAg
gi|11 : ACACATGGCCGGACTACATTC-------AAAATGGAG-ACTAT----CAAC-CTG-AAAACGTGCTCATTATGTTTACTAAAGA-ATAGAGACATGTATAAT----GTTATTGGCAGAAAAAT-CTTTGAAATAAAGCCTGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaatctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|12 : tggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TA-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGCCATTCTGCCGAGTA-----------------CCAGA-CTAACAC-----ATGGCCGGACTA-CA--TTCAAA-----ATGG--------------------AGACTGAAG-A-TATTCTGCAACACTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCACTTg
gi|13 : cgGAACACCTTGGCTA-TT-ACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCGGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGC--AATTTA-CAT----AACG-------TATCA---------------------ATTA-ACT--------GAA-----G-A-TATTCTGCAATGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--TAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|14 : gGAACACCATGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATGCGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGAACCAGAC-TTACACATGGCCGGA-CTA-CATTCAAAATGG--AGACT
gi|14 : AACCAGACTTACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTG---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAAATGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataaatggaagtaacttgccggggcaaattaccaatt
gi|15 : gaacaccatggctattactacgtaataacctcggaaataatgcgggggccgccatattgctgtgacccggcctttctgccgagGAACACCTTTGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGA--AGA-TAT
gi|15 : ACACATGGCCGGACTACATTC-------AAAATGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATAAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccataatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|16 : gaacacctttgctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATACTACTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCAATA--TA-CAT----AACG-------TATCAAT------TA--------------A-ACT--------GAA-----G-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--TAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGTACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|17 : GAACACCTTGGCTA-TT-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAATACCAGAC-TAACACATGG-CGTA-TCA--ATT-AAACTGA--AGA-TAT
gi|17 : gACACATGGC-GTATCA-ATT--------AAACTGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCTAAAGAATACT--GAA---------GAACGTCGAAAAGTCAACCATTTT----TGTTTACGATGATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtctaaagaatactgaagaacgtcgaaaagtcaaccatttttgtttacgatgataacgggaagtaacttgccggggcaaattaccaattg
gi|18 : ggaacaccttggctattactacataataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgaataccagactaGAACACCTTGGCTA-TA-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA--ATT-AAACTGA--AGA-TATg
gi|18 : cgACACATGGC-GTATCA-ATT--------AAACTGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTGATTTCCATTAT-GTCCAAAGAATACC--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACAGGAAATAACTTGCCGGGGCAtctgcaacgcttcaagctgctcttttttcaaagaatgtttgatttccattatgtccaaagaataccgaatgcacgtcgaaaagtcagccatttttgtttacgataataacaggaaataacttgccggggcagttatta
gi|19 : cggaacaccttggctataactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGTCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTA-CATTAAAAATGG--AGACTTTCAACCTGAAAgttatta
gi|19 : ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTacgtgctcattatgtttacttaagaatataaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|2 : attactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggtctttctgccgagtaccagactaacacatggccagactacattaaaaatggagactttcaacctgaaaacgtgctcattatgtttacttaagaatataaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATATGGGG---------GCCGGCCGCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAA---ACATG
gi|2 : tgTTTCCATTAT-GTCCAAAGAATTCT--GAA--------TGCACATCGAAAAGTCAGCCATTTT----TGTTTACGATAATAATGGGAAGTAGCTTGCCGGGGCAA--ATTACCAATTctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaattaatttgtttccattatgtccaaagaattctgaatgcacatcgaaaagtcagccatttttgtttacgataataatgggaagtagcttgccggggcaaattaccaattg
gi|20 : tggaacaccttggctattactacgtaataacctcggaaataatatgggggccggccgccatattgctgtgacccggcctttctgccgagtaccagactaacacatggccagactacattcaaaatggagactatcaacctgaaaacatgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaattaatttgCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA--ATT-AAACTGA--AGA-TATg
gi|20 : ACACATGGC-GTATCA-ATT--------AAACTGAAG-A-TATTCTTCAACGTTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAAAACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtcttcaacgtttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaaaactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|21 : cttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCTGGCCTTTCTG----GTAATAAACATAACGTAT
gi|21 : cgAATAAACATAAC-GTATCA-ATT--------AAACTGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTG---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCAAAAAGTCAGCCATTTT----TGTTTACGATAATAACGAGAAGTAACTTGCCGCGGCAA--ATTACCAATTcaattaaactgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcaaaaagtcagccatttttgtttacgataataacgagaagtaacttgccgcggcaaattaccaattg
gi|22 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacctggcctttctggtACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTATGACCCGGCTTTTCTGCCTAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAAg
gi|22 : ACACATGGCCGGACTACATTC-------AAAATGGAG-ACTAT----CAAC-CTG-AAAACGTGCTCATTATGTTTACTAAAGA-ATAGAGACATGTATAAT----GTTAT-TGGCAGAAAAAGCTTTGAAATAAAGCCTGCACGTCGAAAAGTCAGCCATTTT----TGTTCATGATAATAACGGGAAGTAATTTGCCGGGGCAA--ATTACCAGTTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccatttttgttcatgataataacgggaagtaatttgccggggcaaattaccagtt
gi|23 : acctcggaaataatacgggggccgccatattgctatgacccggcttttctgcctagtaccagactaTACGTAATAACC------TCGGAAA--GTACGGGG---------GCC----GCAATATTGCTGTGACCCGGCCTCTCTGCCGAGTACCAGAC-TAACACATGGCCGTA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAA
gi|23 : ATTTT----CGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ACTACacgtgcttattatgtttacttaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgattttcgtttacgataataacgggaagtaacttgccggggcaaactacaa
gi|24 : tacgtaataacctcggaaagtacgggggccgcaatattgctgtgacccggcctctctgccgagtaccagactaacacatggccgtactacattcaaaatggagactatcaacctgaaaacgtgcttattatgtttacttaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgAATAACC------TCGGAAATAATACGGGG---------GCC----TCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACATATGGCCGGA-CTA-CATTCAAAATGA--AGA-TATaa
gi|24 : ACATATGGCCGGACTACATTC-------AAAATGAAG-A-TATTCTGCAACGTTC-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgttccaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|25 : aataacctcggaaataatacgggggcctccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATGATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACATGAC-TAACACATAGCCGGA-CTA-CATTCAAAATGA--AGA-TATg
gi|25 : gACACATAGCCGGACTACATTC-------AAAATGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------AGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaaagcacgtcgaaaagtcagccatttttgtttacgataataacgggaagt
gi|26 : ggaacaccttggctattactacgtaataacctcggaaatgatacgggggccgccatattgctgtgacccggcctttctgccgagtacatgactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACACGGCCTTTCTGCCGAGTATCAGAC-TAACACATGG-CGTA-TCA--ATT-AAACTGA--AGA-TAT
gi|26 : cgGAGTATCAGACTAA----CACATGGC-GTATCA-ATT--------AAACTGAAG-A-TATTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagcc
gi|27 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacacggcctttctgccTAACAGGAAATAACTTGCCGGGGCAGTTATTATC
gi|28 : GAATACATTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCcgagcatgccggagatcgccgagtagttacgaacg
gi|3 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGACCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGG--ATACTATCAACCTGTAATATACATAAC-GTATCA-ATT--------AAACTGAAG-A-TATTTTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCTATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGAAA--ATTACCAATT
gi|31 : GAACACCTTGGTTA-TTTACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCAT
gi|33 : gGAACACCTTGGTTATTT-ACTACGTTATTATCCGAGTATCGGAGAT
gi|34 : tcgGAATACCTTGGCTA-TT-ACTACGTAATAACC------c
gi|35 : ctcgAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|4 : GAACACCTTGGCTC-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAG-TAACACATGGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAA---ACAT-GC-TCATTATGTT---------TACTAAAGAA-TA----GAGACATGTATAA---TG----TT---ATT--GGCAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgg
gi|5 : caGAACACCTTGGCTA-TT-ACTAAGTAATAACC------TCGGAACTAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TGACACATGGCCGGA-CTA-CATTCAAAATGG--------------T--AATATACATAAC-GTATCA-ATT--------AAACTGAAG-A-TGTTCTGCAACGCTT-CAAGC-TGCTCTTT---TTT--CAAAGA-AT--------GTTTAATTTCCATTAT-GTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTT----TGTTTACAATAATAACGGGAAATAACTTGCCGGGGCAA--ATTACCAA
gi|6 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGAAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGTCTTTCTGCATAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAA
gi|6 : cgACACATGGCCGGACTACATTC-------AAAATGGAG-ACTAT----CAAC-CTG-AAAACGTGCTCATTATGTTTACTAAAGA-ATAGAGACATGTATAAT----GTTAT-TGGCAGAAAAAGCTTTGAAATAAAGCCTGCACGTCGAAAAGTCAGCCTTTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccttttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|7 : cggaacaccttggctattactacgtaataacctcgaaaataatacgggggccgccatattgctgtgactcggtctttctgcatagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----ACCATATTGCTGTGACCC-GCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-TATTCAAAATGG--AGACTATCAACCTGAAAg
gi|7 : cgACACATGGCCGGACTATATTC-------AAAATGGAG-ACTAT----CAAC-CTG-AAAACGTGCTCATTATGTTTACTAAAGA-ATAGAGACATGTATAAT----GTTAT-TGGCAGAAAAAGCTTTGAAATAAAGCCTGCACGTAGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCAGGGCAA--ATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtagaaaagtcagccatttttgtttacgataataacgggaagtaacttgccagggcaaattaccaattg
gi|8 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccaccatattgctgtgacccgcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGC---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAAg
gi|8 : ACACATGGCCGGACTACATTC-------AAAATGGAG-ACTAT----CAAC-CTG-AAAACGTGCTCATTATGTTTACTAAAGA-ATAGAGACATGTATAAT----GTTAT-TGGCAGAAAAGGCTTTGAAATAAAGCCTGCACGTCGAAAAGTCAGCCATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTacgtgctcattatgtttactaaagaatagagacatgtataatgttattggcagaaaaggctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|9 : gaacaccttggctattactacgtaataacctcggaaataatacgggcgccgccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG----------CC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGTCCGGA-CTA-CATTCAAAATGG--AGACTATCAACCTGAAA
gi|9 : cgAGAGACAT--------GTATAAT----GTTATTGTCCAAAGAATACT--GAA--------TGCACGTCGAAAAGTCAGCCATTTTTTTTTGTTTACGATAATAACGGAAAGTAACTTGCCGGGGCAA--ATTACCAATTatgtgctcattatgtttactaaagaatagagacatgtataatgttattgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttttttgtttacgataataacggaaagtaacttgccggggcaaattaccaattg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GTGTATTCCTACAATTATTTATGAGGTTATTATCCCAGCATGCCGGAGATCGCCGAGTAGTT
Unaligned ( gi|30 ): GTGTATTCCTACAATTATTTACAAGGTTATTATCTGCGCATGCCGGAGATCGCCGAGT
Unaligned ( gi|32 ): GTGTATTCCTACAATTATTTACGAGGTTATTATCCAAGCATGCCGGAGATCGCCG
Alignments
lowQualScore : 222 111 11 1 1111 1 1111111111 44444444 111111111 111 33333333
lowQualScore : 1 1 333333 555555555 3333 1 1 1 7 333 666 0 111 6 55 8888888 3 0 6666 9 1 999 1 3 3 444 9999999999 222 444444 1 11111111 22 3333 222222222 3 33333 555 33333333 222 222 33333 3 3333 22
lowQualScore : . . ...... ......... .... . . . . ... ... . ... . .. ....... . . .... . . ... . . . ... .......... ... ...... . ........ .. .... ......... . ..... ... ........ ... ... ..... . .... ..
lowQualScore : 5 5 888888 777777777 0000 5 6 0 3 999 666 9 999 9 66 1111111 8 0 5555 8 5 222 3 8 1 222 3333333333 777 444444 5 22222222 11 3333 777777777 1 88888 444 55555555 777 777 88888 1 4444 22
consensus : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACATGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
Reference ( family-177 ) : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAATACACATGGCCGGACTACATTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|1 : GAACACCTTCGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGGAGGGGGGGGGGC----GCCATATTGCTGGGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATAGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACATGTT-TAA---TGTTA-TT---G---GCAGT--AA---A------AGC-TTTG------GATT--AATTTGTT--------TCCATTAT-GTC-----TAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTACCGGGGCAA--ATTACCAATT
gi|10 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATTGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|10 : gACACATTGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGG-----CAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTC----------------AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTTCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcagccatttttgtttacgataataacgggaagtaactttccggggcaaattaccaattg
gi|11 : ggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|11 : ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGGC-----AGAAAAAT-CTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaatctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|12 : tggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TA-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGCCATTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTg
gi|12 : cgACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACAC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCACTTgaagatattctgcaacacttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccactt
gi|13 : cggaacaccttggctataactacataataacctcggaaataatacgggggccgccatattgctgtgactcggccattctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCGGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGC--AATTTACAT----AACG-----TATCAATTAACTGAAG----------------ATATT-----------CTGCA-----ATGCTTCAA-GC-T-----GC-T---C-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|14 : gGAACACCATGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATGCGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGAACCAGAC-TTACACATGGCCGGA-CTACATTCAAAATGGAGACT
gi|14 : AAC---CAGACTTACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAAATGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataaatggaagtaacttgccggggcaaattaccaatt
gi|15 : gaacaccatggctattactacgtaataacctcggaaataatgcgggggccgccatattgctgtgacccggcctttctgccgagGAACACCTTTGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGAAGA-TAT
gi|15 : ACACATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATAAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccataatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|16 : gaacacctttgctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATACTACTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCAATA--TACAT----AACG-----TATCAA-----TTAAA----------CTGAAGATATT-----------CTGCA-----ACGCTTCAA-GC-T-----GC-T-CTT-TT---T---TT------A---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GTACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|17 : GAACACCTTGGCTA-TT-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAATACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|17 : gACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----TAAAGAATACT---GAA------------GAACGTCGAAA---AGTC-----AACC-ATTTT----TGTTTACGATGATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtctaaagaatactgaagaacgtcgaaaagtcaaccatttttgtttacgatgataacgggaagtaacttgccggggcaaattaccaattg
gi|18 : ggaacaccttggctattactacataataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgaataccagactaGAACACCTTGGCTA-TA-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|18 : cgACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--GA----TT--------TCCATTAT-GTC-----CAAAGAATACC---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACAGGAAATAACTTGCCGGGGCAtctgcaacgcttcaagctgctcttttttcaaagaatgtttgatttccattatgtccaaagaataccgaatgcacgtcgaaaagtcagccatttttgtttacgataataacaggaaataacttgccggggcagttatta
gi|19 : cggaacaccttggctataactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGTCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTAAAAATGGAGACTTTCAAC---CTGAAAgttatta
gi|19 : ACACATGGCCAGACTACATTAAAA-------ATGGAG-A-CTTTC---AAC-C-TG-AAAACGTGCTCATTA--T---GT--T--TACTTA------AGA-AT--------ATA---AA----CA--------TGTATAAT-GTTATTGGCAGAAAAAGCTTTGAAA--------TAAAGCCTGTT---------TT-----GGCTGATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTacgtgctcattatgtttacttaagaatataaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|2 : attactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggtctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATATGGGG---------GCCGGCCGCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACATGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--TGGCA---G------AAA-AA--------GCTTTGAA----TTAATTTGTTTCCATTAT-GTC-----CAAAGAATTCT---GAA--------T---GCACATCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAATGGGAAGTAGCTTGCCGGGGCAA--ATTACCAATT
gi|20 : tgCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|20 : ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTTCAACGT-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAAAACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtcttcaacgtttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaaaactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|21 : cttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCTGGCCTTTCTG----GTAATAAACATAACGTAT
gi|21 : cgAATAAACATAAC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCAAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGAGAAGTAACTTGCCGCGGCAA--ATTACCAATTcaattaaactgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcaaaaagtcagccatttttgtttacgataataacgagaagtaacttgccgcggcaaattaccaattg
gi|22 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacctggcctttctggtACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTATGACCCGGCTTTTCTGCCTAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|22 : ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGG-----CAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTCATGATAATAACGGGAAGTAATTTGCCGGGGCAA--ATTACCAGTTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccatttttgttcatgataataacgggaagtaatttgccggggcaaattaccagtt
gi|23 : acctcggaaataatacgggggccgccatattgctatgacccggcttttctgcctagtaccagactaTACGTAATAACC------TCGGAAA--GTACGGGG---------GCC----GCAATATTGCTGTGACCCGGCCTCTCTGCCGAGTACCAGAC-TAACACATGGCCGTA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA
gi|23 : ACACATGGCCGTACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTTATTATGT---TTACT--TA---AGAATAGAGACAT--------GTAT--AA----T------------GTTAT-TGG-----CAGAAAAAGCT-----------------------TTGAAATAAAGCCTGTTTGGCTGATTTT----CGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ACTACacgtgcttattatgtttacttaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgattttcgtttacgataataacgggaagtaacttgccggggcaaactacaa
gi|24 : tacgtaataacctcggaaagtacgggggccgcaatattgctgtgacccggcctctctgccgagtaccagactaAATAACC------TCGGAAATAATACGGGG---------GCC----TCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACATATGGCCGGA-CTACATTCAAAATGAAGA-TATaa
gi|24 : ACATATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGT-TC-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgttccaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|25 : aataacctcggaaataatacgggggcctccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATGATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACATGAC-TAACACATAGCCGGA-CTACATTCAAAATGAAGA-TATg
gi|25 : gACACATAGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------A---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaaagcacgtcgaaaagtcagccatttttgtttacgataataacgggaagt
gi|26 : ggaacaccttggctattactacgtaataacctcggaaatgatacgggggccgccatattgctgtgacccggcctttctgccgagtacatgactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACACGGCCTTTCTGCCGAGTATCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|26 : cgGAGTATCAGA---CTAA----CACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-tctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagcc
gi|27 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacacggcctttctgccTAACAGGAAATAACTTGCCGGGGCAGTTATTATC
gi|28 : GAATACATTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCcgagcatgccggagatcgccgagtagttacgaacg
gi|3 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGACCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGATACTATCAAC---CTGTAATATACATAAC-GTATCA-ATT-AAA-------CTGAAG-A-TATTTTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCTATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGAAA--ATTACCAATT
gi|31 : GAACACCTTGGTTA-TTTACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCAT
gi|33 : gGAACACCTTGGTTATTT-ACTACGTTATTATCCGAGTATCGGAGAT
gi|34 : tcgGAATACCTTGGCTA-TT-ACTACGTAATAACC------c
gi|35 : ctcgAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|4 : GAACACCTTGGCTC-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAG-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACATGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--T--GG---C------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgg
gi|5 : caGAACACCTTGGCTA-TT-ACTAAGTAATAACC------TCGGAACTAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TGACACATGGCCGGA-CTACATTCAAAATGG---------------T--AATATACATAAC-GTATCA-ATT-AAA-------CTGAAG-A-TGTTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACAATAATAACGGGAAATAACTTGCCGGGGCAA--ATTACCAA
gi|6 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGAAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGTCTTTCTGCATAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-
gi|6 : cgACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGG-----CAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-TTTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccttttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|7 : cggaacaccttggctattactacgtaataacctcgaaaataatacgggggccgccatattgctgtgactcggtctttctgcatagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----ACCATATTGCTGTGACCC-GCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTATATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|7 : cgACACATGGCCGGACTATATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGG-----CAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTAGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCAGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtagaaaagtcagccatttttgtttacgataataacgggaagtaacttgccagggcaaattaccaattg
gi|8 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccaccatattgctgtgacccgcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGC---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|8 : ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGG-----CAGAAAAGGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaggctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|9 : gaacaccttggctattactacgtaataacctcggaaataatacgggcgccgccatattgctgtgacccggcctttctgccgagtaccagactaGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG----------CC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGTCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA
gi|9 : cgACACATGTCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAATGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGTC-----CAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTTTTTTTGTTTACGATAATAACGGAAAGTAACTTGCCGGGGCAA--ATTACCAATTatgtgctcattatgtttactaaagaatagagacatgtataatgttattgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttttttgtttacgataataacggaaagtaacttgccggggcaaattaccaattg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GTGTATTCCTACAATTATTTATGAGGTTATTATCCCAGCATGCCGGAGATCGCCGAGTAGTT
Unaligned ( gi|30 ): GTGTATTCCTACAATTATTTACAAGGTTATTATCTGCGCATGCCGGAGATCGCCGAGT
Unaligned ( gi|32 ): GTGTATTCCTACAATTATTTACGAGGTTATTATCCAAGCATGCCGGAGATCGCCG
Alignments
lowQualScore : 11 11111111111 1111 1 1111111111 44444444 111111111 111 33333333
lowQualScore : 1 1 333333 555555555 3333 1 1 1 8 444 88 1 33 0 66 55555555555 4 9 6666 9 1 999 1 3 3 444 9999999999 222 444444 1 66666666 22 3333 333333333 0 3 555 33333333 222 222 33333 3 3333 22
lowQualScore : . . ...... ......... .... . . . . ... .. . .. . .. ........... . . .... . . ... . . . ... .......... ... ...... . ........ .. .... ......... . . ... ........ ... ... ..... . .... ..
lowQualScore : 5 5 888888 777777777 0000 5 6 0 3 111 00 6 55 8 99 66666666666 7 4 5555 8 5 222 3 8 1 222 3333333333 777 444444 5 77777777 11 3333 555555555 5 1 444 55555555 777 777 88888 1 4444 22
consensus : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACGTGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
Reference ( family-177 ) : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACATGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|1 : GAACACCTTCGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGGAGGGGGGGGGGC----GCCATATTGCTGGGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATAGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACATGTT-TAA---TGTTA-TT---G---GCAGT--AA---A------AGC-TTTG------GATT--AATTTGTT--------TCCATTAT-GTCTAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTACCGGGGCAA--ATTACCAATT
gi|10 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATTGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|10 : gA-ACACATTGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTC----------------AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTTCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcagccatttttgtttacgataataacgggaagtaactttccggggcaaattaccaattg
gi|11 : ggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|11 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGGCAGAAAAAT-CTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaatctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|12 : tggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TA-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGCCATTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTg
gi|12 : cgA-ACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACAC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCACTTgaagatattctgcaacacttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccactt
gi|13 : cggaacaccttggctataactacataataacctcggaaataatacgggggccgccatattgctgtgactcggccattctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCGGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGC--AATTTACAT----AACG-----TATCAATTAACTGAAG-ATA---------------TT-----------CTGCA-----ATGCTTCAA-GC-T-----GC-T---C-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|14 : gGAACACCATGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATGCGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGAACCAGAC-TTACACATGGCCGGA-CTACATTCAAAATGGAGACT
gi|14 : -ACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAAATGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataaatggaagtaacttgccggggcaaattaccaatt
gi|15 : gaacaccatggctattactacgtaataacctcggaaataatgcgggggccgccatattgctgtgacccggcctttctgccgagaaccagacttGAACACCTTTGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGAAGA-TAT
gi|15 : A-ACACATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATAAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccataatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|16 : gaacacctttgctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATACTACTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCAATA--TACAT----AACG-----TATCAAT---T---AA-AC---TGA--AGA-TA--TT-----------CTGCA-----ACGCTTCAA-GC-T-----GC-T-CTT-TT---T---TT------A---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GTACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|17 : GAACACCTTGGCTA-TT-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAATACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|17 : gA-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCTAAAGAATACT---GAA------------GAACGTCGAAA---AGTC-----AACC-ATTTT----TGTTTACGATGATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtctaaagaatactgaagaacgtcgaaaagtcaaccatttttgtttacgatgataacgggaagtaacttgccggggcaaattaccaattg
gi|18 : ggaacaccttggctattactacataataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgaataccagactGAACACCTTGGCTA-TA-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|18 : cgA-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--GA----TT--------TCCATTAT-GTCCAAAGAATACC---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACAGGAAATAACTTGCCGGGGCAtctgcaacgcttcaagctgctcttttttcaaagaatgtttgatttccattatgtccaaagaataccgaatgcacgtcgaaaagtcagccatttttgtttacgataataacaggaaataacttgccggggcagttatta
gi|19 : cggaacaccttggctataactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGTCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTAAAAATGGAGACTTTCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTTAAGAA-TATgttatta
gi|19 : A-ACACATGGCCAGACTACATTAAAA-------ATGGAG-A-CTTTC---AAC-C-TG-AAAACGTGCTCATTA--T---GT--T--TACTTA------AGA-ATATAAACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTTGAAA--------TAAAGCCTGTT---------TT-----GGCTGATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTaaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|2 : attactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggtctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATATGGGG---------GCCGGCCGCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACATGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--TGGCA---G------AAA-AA--------GCTTTGAA----TTAATTTGTTTCCATTAT-GTCCAAAGAATTCT---GAA--------T---GCACATCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAATGGGAAGTAGCTTGCCGGGGCAA--ATTACCAATT
gi|20 : tgCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|20 : A-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTTCAACGT-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAAAACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtcttcaacgtttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaaaactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|21 : cttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCTGGCCTTTCTG----GTAATAAACATAACGTAT
gi|21 : cgTTAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCAAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGAGAAGTAACTTGCCGCGGCAA--ATTACCAATTcaattaaactgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcaaaaagtcagccatttttgtttacgataataacgagaagtaacttgccgcggcaaattaccaattg
gi|22 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacctggcctttctggtaataaacataacgtatcaaACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTATGACCCGGCTTTTCTGCCTAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|22 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTCATGATAATAACGGGAAGTAATTTGCCGGGGCAA--ATTACCAGTTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccatttttgttcatgataataacgggaagtaatttgccggggcaaattaccagtt
gi|23 : acctcggaaataatacgggggccgccatattgctatgacccggcttttctgcctagtaccagactTACGTAATAACC------TCGGAAA--GTACGGGG---------GCC----GCAATATTGCTGTGACCCGGCCTCTCTGCCGAGTACCAGAC-TAACACATGGCCGTA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-AC
gi|23 : A-ACACATGGCCGTACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTTATTATGT---TTACT--TA---AGAATAGAGACAT--------GTAT--AA----T------------GTTAT-TGGCAGAAAAAGCT-----------------------TTGAAATAAAGCCTGTTTGGCTGATTTT----CGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ACTACgtgcttattatgtttacttaagaatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgattttcgtttacgataataacgggaagtaacttgccggggcaaactacaa
gi|24 : tacgtaataacctcggaaagtacgggggccgcaatattgctgtgacccggcctctctgccgagtaccagactAATAACC------TCGGAAATAATACGGGG---------GCC----TCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACATATGGCCGGA-CTACATTCAAAATGAAGA-TATaa
gi|24 : A-ACATATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGT-TC-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgttccaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|25 : aataacctcggaaataatacgggggcctccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATGATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACATGAC-TAACACATAGCCGGA-CTACATTCAAAATGAAGA-TATg
gi|25 : gA-ACACATAGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------A---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaaagcacgtcgaaaagtcagccatttttgtttacgataataacgggaagt
gi|26 : ggaacaccttggctattactacgtaataacctcggaaatgatacgggggccgccatattgctgtgacccggcctttctgccgagtacatgactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACACGGCCTTTCTGCCGAGTATCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|26 : cgGAGTATCAGA---CT---A-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-tctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagcc
gi|27 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacacggcctttctgccTAACAGGAAATAACTTGCCGGGGCAGTTATTATC
gi|28 : GAATACATTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCcgagcatgccggagatcgccgagtagttacgaacg
gi|3 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGACCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGATACTATCAAC---CTGTAATATACATAAC-GTATCA-ATT-AAA-------CTGAAG-A-TATTTTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCTATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGAAA--ATTACCAATT
gi|31 : GAACACCTTGGTTA-TTTACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCAT
gi|33 : gGAACACCTTGGTTATTT-ACTACGTTATTATCCGAGTATCGGAGAT
gi|34 : tcgGAATACCTTGGCTA-TT-ACTACGTAATAACC------c
gi|35 : ctcgAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|4 : GAACACCTTGGCTC-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAG-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACATGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--T--GG---C------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgg
gi|5 : caGAACACCTTGGCTA-TT-ACTAAGTAATAACC------TCGGAACTAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TGACACATGGCCGGA-CTACATTCAAAATGGTAA-TAT--AC---AT---A-ACGTAT----------CAATTAAA-------CTGAAG-A-TGTTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACAATAATAACGGGAAATAACTTGCCGGGGCAA--ATTACCAA
gi|6 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGAAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGTCTTTCTGCATAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-
gi|6 : cgA-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-TTTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccttttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|7 : cggaacaccttggctattactacgtaataacctcgaaaataatacgggggccgccatattgctgtgactcggtctttctgcatagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----ACCATATTGCTGTGACCCG-CCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTATATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|7 : cgA-ACACATGGCCGGACTATATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTAGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCAGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtagaaaagtcagccatttttgtttacgataataacgggaagtaacttgccagggcaaattaccaattg
gi|8 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccaccatattgctgtgacccgcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGC---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|8 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAGGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaggctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|9 : gaacaccttggctattactacgtaataacctcggaaataatacgggcgccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG----------CC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGTCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ATGTGCTC--ATTATGTTT--A-------CTAAAG-A-
gi|9 : cgA-ACACATGTCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAATGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTTTTTTTGTTTACGATAATAACGGAAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttttttgtttacgataataacggaaagtaacttgccggggcaaattaccaattg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GTGTATTCCTACAATTATTTATGAGGTTATTATCCCAGCATGCCGGAGATCGCCGAGTAGTT
Unaligned ( gi|30 ): GTGTATTCCTACAATTATTTACAAGGTTATTATCTGCGCATGCCGGAGATCGCCGAGT
Unaligned ( gi|32 ): GTGTATTCCTACAATTATTTACGAGGTTATTATCCAAGCATGCCGGAGATCGCCG
Alignments
lowQualScore : 11111 111 1111 1 1111111111 44444444 111111111 111 33333333
lowQualScore : 1 1 333333 555555555 3333 1 1 1 8 444 77 1 55555 0 88 777 7777777 4 9 6666 9 1 999 1 3 3 444 9999999999 222 444444 1 66666666 22 3333 333333333 0 3 555 33333333 222 222 33333 3 3333 22
lowQualScore : . . ...... ......... .... . . . . ... .. . ..... . .. ... ....... . . .... . . ... . . . ... .......... ... ...... . ........ .. .... ......... . . ... ........ ... ... ..... . .... ..
lowQualScore : 5 5 888888 777777777 0000 5 6 0 3 111 33 9 11111 7 00 999 4444444 6 1 5555 8 5 222 3 8 1 222 3333333333 777 444444 5 77777777 11 3333 555555555 5 1 444 55555555 777 777 88888 1 4444 22
consensus : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACGTGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
Reference ( family-177 ) : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACGTGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|1 : GAACACCTTCGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGGAGGGGGGGGGGC----GCCATATTGCTGGGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATAGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACATGTT-TAA---TGTTA-TT---G---GCAGT--AA---A------AGC-TTTG------GATT--AATTTGTT--------TCCATTAT-GTCTAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTACCGGGGCAA--ATTACCAATT
gi|10 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATTGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|10 : gA-ACACATTGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTC----------------AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTTCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcagccatttttgtttacgataataacgggaagtaactttccggggcaaattaccaattg
gi|11 : ggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|11 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGGCAGAAAAAT-CTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaatctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|12 : tggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TA-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGCCATTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTg
gi|12 : cgA-ACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACAC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCACTTgaagatattctgcaacacttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccactt
gi|13 : cggaacaccttggctataactacataataacctcggaaataatacgggggccgccatattgctgtgactcggccattctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCGGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGC--AATTTACAT----AACG-----TATCAATTAACTGAAG-ATA---------------TT-----------CTGCA-----ATGCTTCAA-GC-T-----GC-T---C-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|14 : gGAACACCATGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATGCGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGAACCAGAC-TTACACATGGCCGGA-CTACATTCAAAATGGAGACT
gi|14 : -ACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAAATGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataaatggaagtaacttgccggggcaaattaccaatt
gi|15 : gaacaccatggctattactacgtaataacctcggaaataatgcgggggccgccatattgctgtgacccggcctttctgccgagaaccagacttGAACACCTTTGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGAAGA-TAT
gi|15 : A-ACACATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATAAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccataatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|16 : gaacacctttgctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATACTACTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCAATA--TACAT----AACG-----TATCAAT---T---AA-AC---TGA--AGA-TA--TT-----------CTGCA-----ACGCTTCAA-GC-T-----GC-T-CTT-TT---T---TT------A---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GTACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|17 : GAACACCTTGGCTA-TT-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAATACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|17 : gA-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCTAAAGAATACT---GAA------------GAACGTCGAAA---AGTC-----AACC-ATTTT----TGTTTACGATGATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtctaaagaatactgaagaacgtcgaaaagtcaaccatttttgtttacgatgataacgggaagtaacttgccggggcaaattaccaattg
gi|18 : ggaacaccttggctattactacataataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgaataccagactGAACACCTTGGCTA-TA-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|18 : cgA-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--GA----TT--------TCCATTAT-GTCCAAAGAATACC---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACAGGAAATAACTTGCCGGGGCAtctgcaacgcttcaagctgctcttttttcaaagaatgtttgatttccattatgtccaaagaataccgaatgcacgtcgaaaagtcagccatttttgtttacgataataacaggaaataacttgccggggcagttatta
gi|19 : cggaacaccttggctataactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGTCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTAAAAATGGAGACTTTCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTTAAGAA-TATgttatta
gi|19 : A-ACACATGGCCAGACTACATTAAAA-------ATGGAG-A-CTTTC---AAC-C-TG-AAAACGTGCTCATTA--T---GT--T--TACTTA------AGA-ATATAAACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTTGAAA--------TAAAGCCTGTT---------TT-----GGCTGATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTaaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|2 : attactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggtctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATATGGGG---------GCCGGCCGCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACA--TGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--TGGCA---G------AAA-AA--------GCTTTGAA----TTAATTTGTTTCCATTAT-GTCCAAAGAATTCT---GAA--------T---GCACATCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAATGGGAAGTAGCTTGCCGGGGCAA--ATTACCAATT
gi|20 : tgCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|20 : A-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTTCAACGT-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAAAACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtcttcaacgtttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaaaactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|21 : cttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCTGGCCTTTCTG----GTAATAAACATAACGTAT
gi|21 : cgTTAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCAAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGAGAAGTAACTTGCCGCGGCAA--ATTACCAATTcaattaaactgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcaaaaagtcagccatttttgtttacgataataacgagaagtaacttgccgcggcaaattaccaattg
gi|22 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacctggcctttctggtaataaacataacgtatcaaACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTATGACCCGGCTTTTCTGCCTAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|22 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTCATGATAATAACGGGAAGTAATTTGCCGGGGCAA--ATTACCAGTTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccatttttgttcatgataataacgggaagtaatttgccggggcaaattaccagtt
gi|23 : acctcggaaataatacgggggccgccatattgctatgacccggcttttctgcctagtaccagactTACGTAATAACC------TCGGAAA--GTACGGGG---------GCC----GCAATATTGCTGTGACCCGGCCTCTCTGCCGAGTACCAGAC-TAACACATGGCCGTA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTG--CTTATTATGTTT--A-------CTTAAG-A-
gi|23 : A-ACACATGGCCGTACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTTATTATGT---TTACT--TA---AGAATAGAGACAT--------GTAT--AA----T------------GTTAT-TGGCAGAAAAAGCT-----------------------TTGAAATAAAGCCTGTTTGGCTGATTTT----CGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ACTACatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgattttcgtttacgataataacgggaagtaacttgccggggcaaactacaa
gi|24 : tacgtaataacctcggaaagtacgggggccgcaatattgctgtgacccggcctctctgccgagtaccagactAATAACC------TCGGAAATAATACGGGG---------GCC----TCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACATATGGCCGGA-CTACATTCAAAATGAAGA-TATaa
gi|24 : A-ACATATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGT-TC-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgttccaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|25 : aataacctcggaaataatacgggggcctccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATGATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACATGAC-TAACACATAGCCGGA-CTACATTCAAAATGAAGA-TATg
gi|25 : gA-ACACATAGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------A---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaaagcacgtcgaaaagtcagccatttttgtttacgataataacgggaagt
gi|26 : ggaacaccttggctattactacgtaataacctcggaaatgatacgggggccgccatattgctgtgacccggcctttctgccgagtacatgactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACACGGCCTTTCTGCCGAGTATCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|26 : cgGAGTATCAGA---CT---A-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-tctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagcc
gi|27 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacacggcctttctgccTAACAGGAAATAACTTGCCGGGGCAGTTATTATC
gi|28 : GAATACATTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCcgagcatgccggagatcgccgagtagttacgaacg
gi|3 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGACCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGATACTATCAAC---CTGTAATATACATAAC-GTATCA-ATT-AAA-------CTGAAG-A-TATTTTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCTATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGAAA--ATTACCAATT
gi|31 : GAACACCTTGGTTA-TTTACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCAT
gi|33 : gGAACACCTTGGTTATTT-ACTACGTTATTATCCGAGTATCGGAGAT
gi|34 : tcgGAATACCTTGGCTA-TT-ACTACGTAATAACC------c
gi|35 : ctcgAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|4 : GAACACCTTGGCTC-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAG-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACA--TGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--T--GG---C------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgg
gi|5 : caGAACACCTTGGCTA-TT-ACTAAGTAATAACC------TCGGAACTAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TGACACATGGCCGGA-CTACATTCAAAATGGTAA-TAT--AC---ATAA------CGT------ATCA-ATT-AAA-------CTGAAG-A-TGTTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACAATAATAACGGGAAATAACTTGCCGGGGCAA--ATTACCAA
gi|6 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGAAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGTCTTTCTGCATAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-
gi|6 : cgA-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-TTTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccttttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|7 : cggaacaccttggctattactacgtaataacctcgaaaataatacgggggccgccatattgctgtgactcggtctttctgcatagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----ACCATATTGCTGTGACCCG-CCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTATATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|7 : cgA-ACACATGGCCGGACTATATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTAGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCAGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtagaaaagtcagccatttttgtttacgataataacgggaagtaacttgccagggcaaattaccaattg
gi|8 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccaccatattgctgtgacccgcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGC---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|8 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAGGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaggctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|9 : gaacaccttggctattactacgtaataacctcggaaataatacgggcgccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG----------CC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGTCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ATGTGCTC--ATTATGTTT--A-------CTAAAG-A-
gi|9 : cgA-ACACATGTCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAATGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTTTTTTTGTTTACGATAATAACGGAAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttttttgtttacgataataacggaaagtaacttgccggggcaaattaccaattg
blockSeqs : T T CGAGTA . GGCC A T C C TAA TA G GCCGG TG CAA ATGGAGA A C TCTG A . TAT A G A ATG ATGTTTAC CTT GAATAG C AGAGACAT TG . TAATTTGTT T TTG ATAAAGCC AAA TAA TGTTT G TTTT TT
blockSeqs : . . . . . . . C C . A A GCCGG CA CAA ATGGAGA A C GCTT G . TAT A G A A ATGTTTAC . . . AGAGACAT . . T T TT ATAAAGCC . . . G . .
blockSeqs : . . . . . . . C C . A G GCCGG TG CAA . A C TCTG G . GA G G . . ATGTTTAC . . . ATAAACAT . . T . TT ATAAAGCC . . . . . .
blockSeqs : . . . . . . . C C . A A GCCGG CA CAA . . C TCTG G . GA G G . . ATGTTTAC . . . AGAGACAT . . T . TT ATAAAGCC . . . . . .
blockSeqs : . . . . . . . C C . A A GCCGG CA CAA . . C GCTT G . TC G G . . ATGTTTAC . . . AGAGACAT . . T . TT ATAAAGCC . . . . . .
blockSeqs : . . . . . . . A C . A A GCCAG CA AAA . . C TCTG G . TC G G . . ATGTTTAC . . . AGAGACAT . . T . TT ATAAAGCC . . . . . .
blockSeqs : . . . . . . . C C . A A GCCGG CA TAA . . C TCTG G . TC G G . . ATGTTTAC . . . AGAGACAT . . T . TT . . . . . . .
blockSeqs : . . . . . . . C C . A A GCCGT TG CAA . . C TCTT A . TC G G . . ATTGG . . . AGAGACAT . . T . . . . . . . . .
blockSeqs : . . . . . . . C G . A A GCCGG CA CAA . . . TCTG G . TC G G . . TTACT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C C . A G GCCGG TG CAA . . . TCTG G . GA A . . . TTT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C C . A A GCCGG TG CAA . . . TCTG G . TC G . . . TTT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C C . A A GCCGG CA CAA . . . TCTG G . TC G . . . TTT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C C . A G GCCGG TG CAA . . . TTTG G . GA A . . . TTT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C C . A A TCCGG CA CAA . . . TCTG G . GA A . . . TTT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C C . A G GCGT CA CAA . . . TC A . CC G . . . TTT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C . . A A GCGT CA AA . . . G G . TC G . . . GTT . . . . . . T . . . . . . . . .
blockSeqs : . . . . . . . C . A A GCGT TG AA . . . G . . TC G . . . TTT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C . A A GCGT TG AA . . . . . . TC G . . . TTT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A A ACGT CA AA . . . . . . TC G . . . TTT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A A CTC TG AA . . . . . . GA A . . . TTT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A G CTC TA AA . . . . . . GA A . . . TTT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A G AAG TG T . . . . . . GA A . . . TTT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . A A CTC CA T . . . . . . GA A . . . ATT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . G CTC TG T . . . . . . . . . . . TTT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . A CTC CA T . . . . . . . . . . . TT . . . . . . . . . . . . . .
blockSeqs : . . . . . . G CTT A T . . .
blockSeqs : . . . . A CTC A T . . .
blockSeqs : . . G CTC A T . . .
blockSeqs : . . A CTC A T . . .
blockSeqs : . . CTC A T . . .
blockSeqs : . . CTC A T . . .
blockSeqs : . . . . T . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ********* A* GCCGG CAA TCTG TTT******* ******** ****
originalCons : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACGTGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
finalCons : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAAA-CACGTGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---TTTT-------CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GTGTATTCCTACAATTATTTATGAGGTTATTATCCCAGCATGCCGGAGATCGCCGAGTAGTT
Unaligned ( gi|30 ): GTGTATTCCTACAATTATTTACAAGGTTATTATCTGCGCATGCCGGAGATCGCCGAGT
Unaligned ( gi|32 ): GTGTATTCCTACAATTATTTACGAGGTTATTATCCAAGCATGCCGGAGATCGCCG
Alignments
lowQualScore : 11111 111 1111 1 1111111111 44444444 111111111 111 33333333
lowQualScore : 1 1 333333 555555555 3333 1 1 1 8 444 77 1 55555 0 88 777 7777777 4 9 6666 9 1 999 1 3 3 444 9999999999 222 444444 1 66666666 22 3333 333333333 0 3 555 33333333 222 222 33333 3 3333 22
lowQualScore : . . ...... ......... .... . . . . ... .. . ..... . .. ... ....... . . .... . . ... . . . ... .......... ... ...... . ........ .. .... ......... . . ... ........ ... ... ..... . .... ..
lowQualScore : 5 5 888888 777777777 0000 5 6 0 3 111 33 9 11111 7 00 999 4444444 6 1 5555 8 5 222 3 8 1 222 3333333333 777 444444 5 77777777 11 3333 555555555 5 1 444 55555555 777 777 88888 1 4444 22
consensus : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACGTGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
Reference ( family-177 ) : GAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACACGTGGCCGGACTACGTTCAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCGTTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|1 : GAACACCTTCGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGGAGGGGGGGGGGC----GCCATATTGCTGGGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATAGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACATGTT-TAA---TGTTA-TT---G---GCAGT--AA---A------AGC-TTTG------GATT--AATTTGTT--------TCCATTAT-GTCTAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTACCGGGGCAA--ATTACCAATT
gi|10 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATTGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|10 : gA-ACACATTGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTC----------------AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTTCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcagccatttttgtttacgataataacgggaagtaactttccggggcaaattaccaattg
gi|11 : ggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|11 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGGCAGAAAAAT-CTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaatctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|12 : tggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TA-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGCCATTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTg
gi|12 : cgA-ACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACAC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCACTTgaagatattctgcaacacttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccactt
gi|13 : cggaacaccttggctataactacataataacctcggaaataatacgggggccgccatattgctgtgactcggccattctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCGGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGC--AATTTACAT----AACG-----TATCAATTAACTGAAG-ATA---------------TT-----------CTGCA-----ATGCTTCAA-GC-T-----GC-T---C-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---TAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|14 : gGAACACCATGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATGCGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGAACCAGAC-TTACACATGGCCGGA-CTACATTCAAAATGGAGACT
gi|14 : -ACACATGGCCGGACTACATTCAAAATGGAGACTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAAATGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataaatggaagtaacttgccggggcaaattaccaatt
gi|15 : gaacaccatggctattactacgtaataacctcggaaataatgcgggggccgccatattgctgtgacccggcctttctgccgagaaccagacttGAACACCTTTGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGAAGA-TAT
gi|15 : A-ACACATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATAAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccataatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|16 : gaacacctttgctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATACTACTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCAATA--TACAT----AACG-----TATCAAT---T---AA-AC---TGA--AGA-TA--TT-----------CTGCA-----ACGCTTCAA-GC-T-----GC-T-CTT-TT---T---TT------A---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GTACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|17 : GAACACCTTGGCTA-TT-ACTACATAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAATACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|17 : gA-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCTAAAGAATACT---GAA------------GAACGTCGAAA---AGTC-----AACC-ATTTT----TGTTTACGATGATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtctaaagaatactgaagaacgtcgaaaagtcaaccatttttgtttacgatgataacgggaagtaacttgccggggcaaattaccaattg
gi|18 : ggaacaccttggctattactacataataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgaataccagactGAACACCTTGGCTA-TA-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|18 : cgA-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--GA----TT--------TCCATTAT-GTCCAAAGAATACC---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACAGGAAATAACTTGCCGGGGCAtctgcaacgcttcaagctgctcttttttcaaagaatgtttgatttccattatgtccaaagaataccgaatgcacgtcgaaaagtcagccatttttgtttacgataataacaggaaataacttgccggggcagttatta
gi|19 : cggaacaccttggctataactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGTCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTAAAAATGGAGACTTTCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTTAAGAA-TATgttatta
gi|19 : A-ACACATGGCCAGACTACATTAAAA-------ATGGAG-A-CTTTC---AAC-C-TG-AAAACGTGCTCATTA--T---GT--T--TACTTA------AGA-ATATAAACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTTGAAA--------TAAAGCCTGTT---------TT-----GGCTGATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTaaacatgtataatgttattggcagaaaaagctttgaaataaagcctgttttggctgatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|2 : attactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggtctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATATGGGG---------GCCGGCCGCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCAGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACA--TGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--TGGCA---G------AAA-AA--------GCTTTGAA----TTAATTTGTTTCCATTAT-GTCCAAAGAATTCT---GAA--------T---GCACATCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAATGGGAAGTAGCTTGCCGGGGCAA--ATTACCAATT
gi|20 : tgCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TATg
gi|20 : A-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTTCAACGT-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAAAACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtcttcaacgtttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaaaactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|21 : cttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCTGGCCTTTCTG----GTAATAAACATAACGTAT
gi|21 : cgTTAAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---G---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCAAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGAGAAGTAACTTGCCGCGGCAA--ATTACCAATTcaattaaactgaagatattctgcaacgcttcaagctgctcttgtttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcaaaaagtcagccatttttgtttacgataataacgagaagtaacttgccgcggcaaattaccaattg
gi|22 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacctggcctttctggtaataaacataacgtatcaaACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTATGACCCGGCTTTTCTGCCTAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|22 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTCATGATAATAACGGGAAGTAATTTGCCGGGGCAA--ATTACCAGTTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccatttttgttcatgataataacgggaagtaatttgccggggcaaattaccagtt
gi|23 : acctcggaaataatacgggggccgccatattgctatgacccggcttttctgcctagtaccagactTACGTAATAACC------TCGGAAA--GTACGGGG---------GCC----GCAATATTGCTGTGACCCGGCCTCTCTGCCGAGTACCAGAC-TAACACATGGCCGTA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTG--CTTATTATGTTT--A-------CTTAAG-A-
gi|23 : A-ACACATGGCCGTACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTTATTATGT---TTACT--TA---AGAATAGAGACAT--------GTAT--AA----T------------GTTAT-TGGCAGAAAAAGCT-----------------------TTGAAATAAAGCCTGTTTGGCTGATTTT----CGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ACTACatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgtttggctgattttcgtttacgataataacgggaagtaacttgccggggcaaactacaa
gi|24 : tacgtaataacctcggaaagtacgggggccgcaatattgctgtgacccggcctctctgccgagtaccagactAATAACC------TCGGAAATAATACGGGG---------GCC----TCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACATATGGCCGGA-CTACATTCAAAATGAAGA-TATaa
gi|24 : A-ACATATGGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGT-TC-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTtctgcaacgttccaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|25 : aataacctcggaaataatacgggggcctccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATGATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACATGAC-TAACACATAGCCGGA-CTACATTCAAAATGAAGA-TATg
gi|25 : gA-ACACATAGCCGGACTACATTCAAA-------ATGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------A---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTtctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaaagcacgtcgaaaagtcagccatttttgtttacgataataacgggaagt
gi|26 : ggaacaccttggctattactacgtaataacctcggaaatgatacgggggccgccatattgctgtgacccggcctttctgccgagtacatgactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACACGGCCTTTCTGCCGAGTATCAGAC-TAACACATGG-CGTA-TCA-ATT-AAACTGAAGA-TAT
gi|26 : cgGAGTATCAGA---CT---A-ACACATGGC-GTATCA-ATT-AAA-------CTGAAG-A-TATTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-tctgcaacgcttcaagctgctcttttttcaaagaatgtttaatttccattatgtccaaagaatactgaatgcacgtcgaaaagtcagcc
gi|27 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccgccatattgctgtgacacggcctttctgccTAACAGGAAATAACTTGCCGGGGCAGTTATTATC
gi|28 : GAATACATTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCcgagcatgccggagatcgccgagtagttacgaacg
gi|3 : cgGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGACCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGATACTATCAAC---CTGTAATATACATAAC-GTATCA-ATT-AAA-------CTGAAG-A-TATTTTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCTATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGAAA--ATTACCAATT
gi|31 : GAACACCTTGGTTA-TTTACTACGTTATAACC------TCGGAAATAATACGGGG---------GCC----GCCAT
gi|33 : gGAACACCTTGGTTATTT-ACTACGTTATTATCCGAGTATCGGAGAT
gi|34 : tcgGAATACCTTGGCTA-TT-ACTACGTAATAACC------c
gi|35 : ctcgAGTAACTTGCCGGGGCAA--ATTACCAATT
gi|4 : GAACACCTTGGCTC-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAG-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA-ACA--TGCTC--ATTATGTTT--A-------CTAAAGAA-TA----GAGACAT-GTATAA---TG-----T---T---AT--T--GG---C------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTgg
gi|5 : caGAACACCTTGGCTA-TT-ACTAAGTAATAACC------TCGGAACTAATACGGGG---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TGACACATGGCCGGA-CTACATTCAAAATGGTAA-TAT--AC---ATAA------CGT------ATCA-ATT-AAA-------CTGAAG-A-TGTTCTGCAACGC-TT-CAAGC-TGCTC-TT---T---TT--T--CA---A------AGA-AT--------GTTT--AA----TT--------TCCATTAT-GTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACAATAATAACGGGAAATAACTTGCCGGGGCAA--ATTACCAA
gi|6 : gGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGAAAATAATACGGGG---------GCC----GCCATATTGCTGTGACTCGGTCTTTCTGCATAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-
gi|6 : cgA-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-TTTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtcgaaaagtcagccttttttgtttacgataataacgggaagtaacttgccggggcaaattaccaattg
gi|7 : cggaacaccttggctattactacgtaataacctcgaaaataatacgggggccgccatattgctgtgactcggtctttctgcatagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG---------GCC----ACCATATTGCTGTGACCCG-CCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTATATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|7 : cgA-ACACATGGCCGGACTATATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAAGCTTT-GAAATAAAGCCT---GCACGTAGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCAGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaagctttgaaataaagcctgcacgtagaaaagtcagccatttttgtttacgataataacgggaagtaacttgccagggcaaattaccaattg
gi|8 : cggaacaccttggctattactacgtaataacctcggaaataatacgggggccaccatattgctgtgacccgcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGC---------GCC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGGCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ACGTGCTC--ATTATGTTT--A-------CTAAAG-A-g
gi|8 : A-ACACATGGCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAACGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTAT-TGGCAGAAAAGGCTTT-GAAATAAAGCCT---GCACGTCGAAA---AGTC-----AGCC-ATTTT----TGTTTACGATAATAACGGGAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattggcagaaaaggctttgaaataaagcctgcacgtcgaaaagtcagccatttttgtttacgataataacgggaagtaacttgccggggcaaattaccaatt
gi|9 : gaacaccttggctattactacgtaataacctcggaaataatacgggcgccgccatattgctgtgacccggcctttctgccgagtaccagactGAACACCTTGGCTA-TT-ACTACGTAATAACC------TCGGAAATAATACGGGG----------CC----GCCATATTGCTGTGACCCGGCCTTTCTGCCGAGTACCAGAC-TAACACATGTCCGGA-CTACATTCAAAATGGAGACTATCAAC---CTGAAA---ATGTGCTC--ATTATGTTT--A-------CTAAAG-A-
gi|9 : cgA-ACACATGTCCGGACTACATTCAAA-------ATGGAG-ACTAT----CAAC-C-TG-AAAATGTGCTC-AT---TATGTT--TACTA---A------AGA-ATAGAGACATGTAT--AA----T------------GTTATTGTCCAAAGAATACT---GAA--------T---GCACGTCGAAA---AGTC-----AGCC-ATTTTTTTTTGTTTACGATAATAACGGAAAGTAACTTGCCGGGGCAA--ATTACCAATTatagagacatgtataatgttattgtccaaagaatactgaatgcacgtcgaaaagtcagccatttttttttgtttacgataataacggaaagtaacttgccggggcaaattaccaattg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|29 ): GTGTATTCCTACAATTATTTATGAGGTTATTATCCCAGCATGCCGGAGATCGCCGAGTAGTT
Unaligned ( gi|30 ): GTGTATTCCTACAATTATTTACAAGGTTATTATCTGCGCATGCCGGAGATCGCCGAGT
Unaligned ( gi|32 ): GTGTATTCCTACAATTATTTACGAGGTTATTATCCAAGCATGCCGGAGATCGCCG