lowQualScore : 1 11 222 111 3333333333333333333333333333333333 1 111 3333333 11 1 1 3333333 11 7777777777 11 666
lowQualScore : 6 5 3 6 99 555 8 888 4 6666666666666666666666666666666666 33 1 777 55 9999999 44 00 44 0 5 0 33 2222222 2 444 5555 77 0 3 3 11 6 0000000000 44 4 111
lowQualScore : . . . . .. ... . ... . .................................. .. . ... .. ....... .. .. .. . . . .. ....... . ... .... .. . . . .. . .......... .. . ...
lowQualScore : 0 0 0 0 00 333 3 777 8 0000000000000000000000000000000000 22 0 888 33 2222222 66 99 22 0 0 0 44 4444444 1 111 0000 66 3 3 0 99 7 4444444444 00 0 000
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAGAANGTTCTCATCNTGGTAAC--CACTAGTCA-ACTGTGCNTT---GA--AAT-T--TT---T-A---------GACNGGCTTCATATNATTGTCNAGTTCTC-GTTGT--CATCCGACAG--CTATTG-TT-T-GAGACAAGCTTC--C--AAA--GTCGAGC---GCG----CTGTCC-TCCGACAGCTCT-TGTT--TT-AT---AAA--ATCTTAT-TGAACANAACTA--ATTTTA
Reference ( gi|1 ) : TTTTGTTAGAATCAAAACCCTTTGTATACGAAAAAAATTGAGGGTTTTTTTTGTAGCATATTTTTATATTGGTAAC--AACTTGTCATACTATGTTTT---GA--AAT-T--TT---T-A---------GACAGTCTTCATATAAGTGTTTAGTTCTCTGTTGT--CATCCAACAG--CTATTG-TT-T-GAGACAAGCTTC--C--AA---GTCGAGC---ATG----CTGTCT-TCTGACAGCTCT-TATT--TT-AT---AAAGCACCTTAC-TGAACAAAACTGATATTTTACTTG
gi|3 : TTTATAGAAGATTCTTATCATAGTAAC--CACTAGT---ACTATGCATT---GA--ATT-T--TT---TGA---------GATGGGCTTCATAACATTGTCCAGTTC-----TGC--CGCCCACTAG--CTATTG-TTCT-GAGACATATTTC--C--AAAT-GTTAAGCTAGATG----TTGT
gi|14 : gtttaacATGTTCTCATCTTGGTAAC--CACAAGTCAAACTGTGTATT---GA--ATT-T--TT---G-A---------GACAGGTTTC
gi|2 : ttatTAACCTAACTTGTTATACTCAGCT----------AT-T--TA---T-A---------GA-ATGCTTTATTTTAGTATCTAATTCTC----AT--AATGCGATAG--TTATTA-CT-T-AAGAAAAACTTC--C--AATC-GTTGTTC---GTG----CTGTCA-GTCGACCGCACT-TATTTGTT-AT----------CTTATATAAATATAACTA--ATTTTA
gi|4 : gcATTGTGTTTTTGGGA--CATAT--TT---T-ATATTATCGGGACAGGCTTCGTATTATTGTCCAGTTGTCTGT-----CATCCAACAG--CCATTGTTT-T-GGGAT--GTTT----------------GC---TTG----TGGTCC-TCAGACAGCTCTATAT
gi|6 : ACTGTGCCTT---AATTAAT-TGATT---G-A---------GACTGGATTCATAT---TGTTTAGTTAA-----GT--CATTAGATAA--ATATTG-TT-T-GAGAAAAGCGTC--C--AAAT-ATCGAAC---GCG----CTGT-------AC--CTCT-TGTT--TTGGT---AAAatatattac
gi|9 : --AAT-T--TTTCAT-A---------G-CTGTCTTTATAGAATTGTCAAGATCTCAGTCGTACCATT-----G--CTATT--TT-T-TAAACACGCTTC--C--AAGT-GTCGAGC---GCG----TTGTTC-TCCGACATCT
gi|10 : TATGCGTTGATTTTTC-GTT----CATTTTGCAGTCCT-TTG-TTGC-GAGACAAGCTTT--C--A----GTAGAGC---ATG----CTGTCC-T-TAGCAGCTTT-TGTT--TT-
gi|17 : TGT--CATCAGACCG--CTATTATTT-T-GAAACAAGTTTC--CAAAA---GTCGAAT---ATG----Cg
gi|13 : GT--TATCCGGTAG--CTCTTG-TT-TTAAGACAAACTTCGGC--A----GT-GAGC---GTG----CTGTCT-TTTGTCAGCTCT-TGTT--T
gi|7 : caGT--CAGCTGATAG--CTATTG-TT-TCAAGACAAGCTTA--A--AAA--GTTGAGC---ATG----TTGTTC-TCTGATAGCTTT-
gi|12 : aGT--CATCTGACAG--C---------------CAAGTTCT--C--AAAT-GTAGAGC---ATA----CTGTCC-TCCGACAGCTCT-TGTT--TT-AT---AAA-TATCCTAC-Tggttactgttatgacatgatttgacgaatgatcttggcatttttt
gi|5 : aGT--AATCTGACAG--TTAATGCTT-T-GAGGCAGACTGA--G--AAAA-GTCGAGC---GTG----CTGTCC-TCCGACAGATCT-TGTtcaca
gi|11 : gtccaatttaa--CATCAGACAG--TTATTGGTT-T-GAGGTTCTCTCT--A--AA---ATCGAGC---GCG----CTGTCC-TTTGACAGCTCT-TGTTA-TT-GT---Aacataccggtattctttgttaaaagattgttatattttagttgttat
gi|15 : cG--CCATTG-TT-TTGAGACAAGCTTC--CAAAA---GTTAAAC---ATGCCCACTTTCC-CCTGGCAGCTtatgagc
gi|16 : TATTG-TT-TTGAGACAGGCTTC--CAAAA---ATCCAGC---ACA----CTGTTT-TCTGACA
gi|18 : -TT-T-TAGACAAGCTTC--C--AAAG-ATTGAGC---ATA----CTGTTT-TCTGCCAGCTCC-Ttag
gi|8 : -TT-T-GAGACAAGCT-C--C--AAAAAGTCGAGC---GTG----CTCTCG-TCCATTAGCTCT-TGTT--TC-ATTCCA----ATCTGAT-TGAACAAtt
gi|19 : catttgagaactataatTCTAGC---GCG----CTGTCCATCCGACAGCTCT-TGTT--cattttttgcatctt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TTTCATAGTATTGACCAGTTGTCTATCATCCGACAGCTTTTGTTT
Unaligned ( gi|21 ): TTTTTAGACAAAATAAGTGAAAATGATTGAAA
Alignments
lowQualScore : 11111 2222 11 111 2222222 1 11 1111 111111111 1 11 2222
lowQualScore : 44444 0 1 9999 1 11 99 888 1 4 88 1 1 9999999 0 33 33 6 4 1 444 666 2 55 2 1 4444 2 1 2222 888888888 0 33 9999
lowQualScore : ..... . . .... . .. .. ... . . .. . . ....... . .. .. . . . ... ... . .. . . .... . . .... ......... . .. ....
lowQualScore : 33333 7 0 0000 0 00 22 333 0 3 11 3 0 8888888 3 44 22 7 4 1 111 111 4 00 2 4 7777 5 7 5555 111111111 0 00 7777
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-ATATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTCTC-GTTGTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAA--ATCTTAC-TGAACA-AACTG--ATTTTA
Reference ( family-175 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAGAANGTTCTCATCNTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCNAGTTCTC-GTTGTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAA--ATCTTAT-TGAACANAACTA--ATTTTA
gi|1 : TTTGTAGCATATTTTTATATTGGTAACAACTTGTC-ATACTATGTTTTGA--AATT--TTT---AGACAGTCTTCATATAAGTGTTTAGTTCTCTGTTGTCATCCAACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC---A-A--G-TCGA----GCATGCTGTCT-TCTGACAGCTCTTATT----TT-A-TAAAGCACCTTAC-TGAACAAAACTGATATTTTA
gi|10 : ttttgttagaatcaaaaccctttgtatacgaaaaaaattgagggtttttGTTGATTTTTC-GTT--CATTTTGCAGTCCT-T--TG-TTGC-GAGACAAGCT---TTC-----A--G-TAGA----GCATGCTGTCC-TTAG-CAGCTTTTGTT----TT-cttg
gi|11 : tatgcCATCAGACAG--TTAT--TGGTT-T-GAG----GTTCTCTCT-A-A-A--A-TCGA----GCGCGCTGTCC-TTTGACAGCTCTTGTTA---TT-G-TAg
gi|12 : cGTCATCTGACAG--C-----------------CAAGTT---CTC-A-A-AT-G-TAGA----GCATACTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAAT-ATCCTAC-Ttatgagc
gi|13 : aGTTATCCGGTAG--CTCT--TG-TT-TTAAGACAAACT---TCG-G-C-A--G-T-GA----GCGTGCTGTCT-TTTGTCAGCTCTTGTT----Ttcaca
gi|14 : caTTATA---TGTTCTCATCTTGGTAACCACAAGTCAA-ACTGTGTATTGA--ATTT--TTG---AGACAGGTTTC
gi|15 : G--CCAT--TG-TT-TTGAGACAAGCT---TCCAA-A-A--G-TTAAACATGCCCACTTTCC-CCTGGCAGCT
gi|16 : TAT--TG-TT-TTGAGACAGGCT---TCCAA-A-A--A-TCCA----GCACACTGTTT-TCTGACA
gi|17 : TGTCATCAGACCG--CTAT--TA-TT-TTGAAACAAGTT---TCC-AAA-A--G-TCGA----tag
gi|18 : -TT-T-TAGACAAGCT---TCC-A-A-A--GATTGA----GCATACTGTTT-TCTGCCAGCTCCTatatgc
gi|19 : -TCTA----GCGCGCTGTCCATCCGACAGCTCTTGTT----tt
gi|2 : ATT--TAT---AGAATG-CTTTATTTTAGTATCTAATTCTC-AT---AATGCGATAG--TTAT--TA-CT-T-AAGAAAAACT---TCC-A-ATC--G-TTGT----TCGTGCTGTCA-GTCGACCGCACTTATT----TG-T-T-----ATCTTATATAAATATAACTA--ATTTTAatctgtattatagacatc
gi|20 : gctaacctaacttgttatactcagctTTCATAGTATTGACCAGTTGTC---TATCATCCGACAG--CTTT--TG-TT-T-
gi|3 : tTTTATAGAAGATTCTTATCATAGTAACCACTAGT----ACTATGCATTGA--ATTT--TTTG--AGATGGGCTTCATAACATTGTCCAGTTC-----TGCCGCCCACTAG--CTAT--TG-TTCT-GAGACATATT---TCC-A-A-AT-G-TTAA----GC
gi|4 : gtttaacGACAGGCTTCGTATTATTGTCCAGTTGTC---TGTCATCCAACAG--CCAT--TGTTT-T-GGGAT--GTT---T--------------------GCTTGTGGTCC-TCAGACAGCTCTtagatgttgt
gi|5 : attgtgtttttgggacatattttatattatcggGTAATCTGACAG--TTAA--TGCTT-T-GAGGCAGACT---GAG-A-A-AA-G-TCGA----GCGTGCTGTCC-TCCGACAGATCTTGTatatatatattac
gi|6 : gtccaatttaa-ACTGTGCCTTAATTAATTGATTG---AGACTGGATTCATAT---TGTTTAGTTAA-----GTCATTAGATAA--ATAT--TG-TT-T-GAGAAAAGCG---TCC-A-A-AT-A-TCGA----ACGCGCTGT-------AC--CTCTTGTT----TTGG-TAAA--acataccggtattctttgttaaaagattgttatattttagttgttat
gi|7 : GTCAGCTGATAG--CTAT--TG-TT-TCAAGACAAGCT---TAA-A-A-A--G-TTGA----GCATGTTGTTC-TCTGATAGCTTTGGTTACTGTT-A-TGAC--AT
gi|8 : aCATTTGAGAA--CTATAAT--TT-T-GAGACAAGCT----CC-A-A-AAAG-TCGA----GCGTGCTCTCG-TCCATTAGCTCTTGTT----TC-ATTCCA--ATCTGAT-TGAAC--AAC----ATTTTgatttgacgaatgatcttggcatttttt
gi|9 : --AATT--TTTCATAG-CTGTCTTTATAGAATTGTCAAGATCTC-A--GTCGTACCATTG--CTAT--TT-TT-T-AA-ACACGCT---TCC-A-A-GT-G-TCGA----GCGCGTTGTTC-TCCGACATCTttgcatctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTAGACAAAATAAGTGAAAATGATTGAAA
Alignments
lowQualScore : 3333 2222 11 111 2222222 1 11 1111 111111111 111 11
lowQualScore : 2222 9999 1 11 99 888 1 4 88 1 0 9999999 0 33 33 6 4 1 444 666 2 55 2 1 4444 2 1 2222 888888888 3 0 8 0 444 6 88
lowQualScore : .... .... . .. .. ... . . .. . . ....... . .. .. . . . ... ... . .. . . .... . . .... ......... . . . . ... . ..
lowQualScore : 3333 0000 0 00 22 333 0 3 11 3 4 8888888 3 44 22 7 4 1 111 111 4 00 2 4 7777 5 7 5555 111111111 8 6 0 2 888 7 33
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTCTC-GTTGTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAA--ATCTTAT-TGAAC-A-AACTG--ATTTTA
Reference ( family-175 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTCTC-GTTGTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAA--ATCTTAC-TGAAC-A-AACTG--ATTTTA
gi|1 : TTTGTAGCA-TATTTTTATATTGGTAACAACTTGTC-ATACTATGTTTTGA--AATT--TTT---AGACAGTCTTCATATAAGTGTTTAGTTCTCTGTTGTCATCCAACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC---A-A--G-TCGA----GCATGCTGTCT-TCTGACAGCTCTTATT----TT-A-TAAAGCACCTTAC-TGAACAA-AACTGATATTTTA
gi|10 : ttttgttagaatcaaaaccctttgtatacgaaaaaaattgagggtttttTTTTC-GTT--CATTTTGCAGTCCT-T--TG-TTGC-GAGACAAGCT---TTC-----A--G-TAGA----GCATGCTGTCC-TTAG-CAGCTTTTGTT----TT-cttg
gi|11 : tatgcgttgatCATCAGACAG--TTAT--TGGTT-T-GAG----GTTCTCTCT-A-A-A--A-TCGA----GCGCGCTGTCC-TTTGACAGCTCTTGTTA---TT-G-TAg
gi|12 : cGTCATCTGACAG--C-----------------CAAGTT---CTC-A-A-AT-G-TAGA----GCATACTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAAT-ATCCTAC-Ttatgagc
gi|13 : aGTTATCCGGTAG--CTCT--TG-TT-TTAAGACAAACT---TCG-G-C-A--G-T-GA----GCGTGCTGTCT-TTTGTCAGCTCTTGTT----Ttcaca
gi|14 : caTTATA----TGTTCTCATCTTGGTAACCACAAGTCAA-ACTGTGTATTGA--ATTT--TTG---AGACAGGTTTC
gi|15 : G--CCAT--TG-TT-TTGAGACAAGCT---TCCAA-A-A--G-TTAAACATGCCCACTTTCC-CCTGGCAGCT
gi|16 : TAT--TG-TT-TTGAGACAGGCT---TCCAA-A-A--A-TCCA----GCACACTGTTT-TCTGACA
gi|17 : TGTCATCAGACCG--CTAT--TA-TT-TTGAAACAAGTT---TCC-AAA-A--G-TCGA----tag
gi|18 : -TT-T-TAGACAAGCT---TCC-A-A-A--GATTGA----GCATACTGTTT-TCTGCCAGCTCCTatatgc
gi|19 : -TCTA----GCGCGCTGTCCATCCGACAGCTCTTGTT----tt
gi|2 : ATT--TAT---AGAATG-CTTTATTTTAGTATCTAATTCTC-AT---AATGCGATAG--TTAT--TA-CT-T-AAGAAAAACT---TCC-A-ATC--G-TTGT----TCGTGCTGTCA-GTCGACCGCACTTATT----TG-T-T-----ATCTTATATAAAT-ATAACTA--ATTTTAatctgtattatagacatc
gi|20 : gctaacctaacttgttatactcagctTTCATAGTATTGACCAGTTGTC---TATCATCCGACAG--CTTT--TG-TT-T-
gi|3 : tTTTATAG-AAGATTCTTATCATAGTAACCACTAGT----ACTATGCATTGA--ATTT--TTTG--AGATGGGCTTCATAACATTGTCCAGTTC-----TGCCGCCCACTAG--CTAT--TG-TTCT-GAGACATATT---TCC-A-A-AT-G-TTAA----GC
gi|4 : gtttaacGACAGGCTTCGTATTATTGTCCAGTTGTC---TGTCATCCAACAG--CCAT--TGTTT-T-GGGAT--GTT---T--------------------GCTTGTGGTCC-TCAGACAGCTCTtagatgttgt
gi|5 : attgtgtttttgggacatattttatattatcggGTAATCTGACAG--TTAA--TGCTT-T-GAGGCAGACT---GAG-A-A-AA-G-TCGA----GCGTGCTGTCC-TCCGACAGATCTTGTatatatatattac
gi|6 : gtccaatttaa-ACTGTGCCTTAATTAATTGATTG---AGACTGGATTCATAT---TGTTTAGTTAA-----GTCATTAGATAA--ATAT--TG-TT-T-GAGAAAAGCG---TCC-A-A-AT-A-TCGA----ACGCGCTGT-------AC--CTCTTGTT----TTGG-TAAA--acataccggtattctttgttaaaagattgttatattttagttgttat
gi|7 : GTCAGCTGATAG--CTAT--TG-TT-TCAAGACAAGCT---TAA-A-A-A--G-TTGA----GCATGTTGTTC-TCTGATAGCTTTGGTTACTGTT-A-TGAC--A--TGAT-TTGAC-G-AA-TG--ATCTT
gi|8 : aCATTTGAGAA--CTATAAT--TT-T-GAGACAAGCT----CC-A-A-AAAG-TCGA----GCGTGCTCTCG-TCCATTAGCTCTTGTT----TC-ATTCCA--ATCTGAT-TGAAC-A-Aggcatttttt
gi|9 : --AATT--TTTCATAG-CTGTCTTTATAGAATTGTCAAGATCTC-A--GTCGTACCATTG--CTAT--TT-TT-T-AA-ACACGCT---TCC-A-A-GT-G-TCGA----GCGCGTTGTTC-TCCGACATCTcattttttgcatctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTAGACAAAATAAGTGAAAATGATTGAAA
Alignments
lowQualScore : 3333 2222 11 111 2222222 1 11 1111 111111111 111 11
lowQualScore : 2222 9999 1 11 99 888 1 4 88 1 0 9999999 0 33 33 6 4 1 444 666 2 55 2 1 4444 2 1 2222 888888888 3 0 8 0 444 6 88
lowQualScore : .... .... . .. .. ... . . .. . . ....... . .. .. . . . ... ... . .. . . .... . . .... ......... . . . . ... . ..
lowQualScore : 3333 0000 0 00 22 333 0 3 11 3 4 8888888 3 44 22 7 4 1 111 111 4 00 2 4 7777 5 7 5555 111111111 8 6 0 2 888 7 33
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTCTC-GTTGTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAA--ATCTTAT-TGAAC-A-AACTG--ATTTTA
Reference ( family-175 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTCTC-GTTGTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAA--ATCTTAT-TGAAC-A-AACTG--ATTTTA
gi|1 : TTTGTAGCA-TATTTTTATATTGGTAACAACTTGTC-ATACTATGTTTTGA--AATT--TTT---AGACAGTCTTCATATAAGTGTTTAGTTCTCTGTTGTCATCCAACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC---A-A--G-TCGA----GCATGCTGTCT-TCTGACAGCTCTTATT----TT-A-TAAAGCACCTTAC-TGAACAA-AACTGATATTTTA
gi|10 : ttttgttagaatcaaaaccctttgtatacgaaaaaaattgagggtttttTTTTC-GTT--CATTTTGCAGTCCT-T--TG-TTGC-GAGACAAGCT---TTC-----A--G-TAGA----GCATGCTGTCC-TTAG-CAGCTTTTGTT----TT-cttg
gi|11 : tatgcgttgatCATCAGACAG--TTAT--TGGTT-T-GAG----GTTCTCTCT-A-A-A--A-TCGA----GCGCGCTGTCC-TTTGACAGCTCTTGTTA---TT-G-TAg
gi|12 : cGTCATCTGACAG--C-----------------CAAGTT---CTC-A-A-AT-G-TAGA----GCATACTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAAT-ATCCTAC-Ttatgagc
gi|13 : aGTTATCCGGTAG--CTCT--TG-TT-TTAAGACAAACT---TCG-G-C-A--G-T-GA----GCGTGCTGTCT-TTTGTCAGCTCTTGTT----Ttcaca
gi|14 : caTTATA----TGTTCTCATCTTGGTAACCACAAGTCAA-ACTGTGTATTGA--ATTT--TTG---AGACAGGTTTC
gi|15 : G--CCAT--TG-TT-TTGAGACAAGCT---TCCAA-A-A--G-TTAAACATGCCCACTTTCC-CCTGGCAGCT
gi|16 : TAT--TG-TT-TTGAGACAGGCT---TCCAA-A-A--A-TCCA----GCACACTGTTT-TCTGACA
gi|17 : TGTCATCAGACCG--CTAT--TA-TT-TTGAAACAAGTT---TCC-AAA-A--G-TCGA----tag
gi|18 : -TT-T-TAGACAAGCT---TCC-A-A-A--GATTGA----GCATACTGTTT-TCTGCCAGCTCCTatatgc
gi|19 : -TCTA----GCGCGCTGTCCATCCGACAGCTCTTGTT----tt
gi|2 : ATT--TAT---AGAATG-CTTTATTTTAGTATCTAATTCTC-AT---AATGCGATAG--TTAT--TA-CT-T-AAGAAAAACT---TCC-A-ATC--G-TTGT----TCGTGCTGTCA-GTCGACCGCACTTATT----TG-T-T-----ATCTTATATAAAT-ATAACTA--ATTTTAatctgtattatagacatc
gi|20 : gctaacctaacttgttatactcagctTTCATAGTATTGACCAGTTGTC---TATCATCCGACAG--CTTT--TG-TT-T-
gi|3 : tTTTATAG-AAGATTCTTATCATAGTAACCACTAGT----ACTATGCATTGA--ATTT--TTTG--AGATGGGCTTCATAACATTGTCCAGTTC-----TGCCGCCCACTAG--CTAT--TG-TTCT-GAGACATATT---TCC-A-A-AT-G-TTAA----GC
gi|4 : gtttaacGACAGGCTTCGTATTATTGTCCAGTTGTC---TGTCATCCAACAG--CCAT--TGTTT-T-GGGAT--GTT---T--------------------GCTTGTGGTCC-TCAGACAGCTCTtagatgttgt
gi|5 : attgtgtttttgggacatattttatattatcggGTAATCTGACAG--TTAA--TGCTT-T-GAGGCAGACT---GAG-A-A-AA-G-TCGA----GCGTGCTGTCC-TCCGACAGATCTTGTatatatatattac
gi|6 : gtccaatttaa-ACTGTGCCTTAATTAATTGATTG---AGACTGGATTCATAT---TGTTTAGTTAA-----GTCATTAGATAA--ATAT--TG-TT-T-GAGAAAAGCG---TCC-A-A-AT-A-TCGA----ACGCGCTGT-------AC--CTCTTGTT----TTGG-TAAA--acataccggtattctttgttaaaagattgttatattttagttgttat
gi|7 : GTCAGCTGATAG--CTAT--TG-TT-TCAAGACAAGCT---TAA-A-A-A--G-TTGA----GCATGTTGTTC-TCTGATAGCTTTGGTTACTGTT-A-TGAC--A--TGAT-TTGAC-G-AA-TG--ATCTT
gi|8 : aCATTTGAGAA--CTATAAT--TT-T-GAGACAAGCT----CC-A-A-AAAG-TCGA----GCGTGCTCTCG-TCCATTAGCTCTTGTT----TC-ATTCCA--ATCTGAT-TGAAC-A-Aggcatttttt
gi|9 : --AATT--TTTCATAG-CTGTCTTTATAGAATTGTCAAGATCTC-A--GTCGTACCATTG--CTAT--TT-TT-T-AA-ACACGCT---TCC-A-A-GT-G-TCGA----GCGCGTTGTTC-TCCGACATCTcattttttgcatctt
blockSeqs : GAA CAA A TT GA CAT A G TT G TTCGTT TC AA G G T CTC AA T AA A A ACAT A A ACTG ATAAAT T A AT C .
blockSeqs : . . A . . G T G GT T CTCAT . . T C T . AA . T . C . . T A GGTAAA T . G . .
blockSeqs : C . . . G G AC T GTCT . . C . T . AA . T . A . . C . ATTCCA T . A
blockSeqs : . . . A G TT T GTCT . . . . T . A . A . T . . T . ATGAC . .
blockSeqs : . . T T GA T CTCA . . . . C . A . T . C . . T . TT
blockSeqs : T . T . CT . . . . . . G . T . C . . T .
blockSeqs : AA . . . . . . A . . . T . . T .
blockSeqs : . . . . . . A . . . C . . C .
blockSeqs : . . . . . . A . . . T . . C .
blockSeqs : . . . . . . A . . . T . . A
blockSeqs : . . . . . . A . . . C . . C
blockSeqs : . . . . . . A . . . C . . T
blockSeqs : . . . . . . A . . . T . . C
blockSeqs : . . . . . . A . . . C . . C
blockSeqs : . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : NTCT*** A** ATTAAA***
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTCTC-GTTGTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TT-A-TAAA--ATCTTAT-TGAAC-A-AACTG--ATTTTA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTNTCT---GTCATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCCA--A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT----TTATTAAA---ATCTTAT-TGAAC-A-AACTG--ATTTTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTAGACAAAATAAGTGAAAATGATTGAAA
Alignments
lowQualScore : 3333 2222 11 111 1 11 11111 111 11
lowQualScore : 2222 9999 1 11 99 888 1 4 88 1 6 5 444 0 33 33 6 4 1 444 666 2 55 2 1 4444 2 1 4 3 77777 0 8 0 444 6 88
lowQualScore : .... .... . .. .. ... . . .. . . . ... . .. .. . . . ... ... . .. . . .... . . . . ..... . . . ... . ..
lowQualScore : 3333 0000 0 00 22 333 0 3 11 3 9 9 777 3 44 22 7 4 1 111 111 4 00 2 4 7777 5 7 0 2 55555 6 0 2 888 7 33
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTNTCTGT---CATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT-TTGTTAAA--ATCTTAT-TGAAC-A-AACTG--ATTTTA
Reference ( family-175 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATAG-A-TATTCTTATCTTGGTAACCACTAGTC-A-ACTGTGCNTTGA--AATT--TTT---AGACNGGCTTCATATNATTGTCCAGTTNTCTGT---CATCCGACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC-A-A-A--G-TCGA----GCGCGCTGTCC-TCCGACAGCTCTTGTT-TTATTAAA--ATCTTAT-TGAAC-A-AACTG--ATTTTA
gi|1 : TTTGTAGCA-TATTTTTATATTGGTAACAACTTGTC-ATACTATGTTTTGA--AATT--TTT---AGACAGTCTTCATATAAGTGTTTAGTTCTCTGTTGTCATCCAACAG--CTAT--TG-TT-T-GAGACAAGCT---TCC---A-A--G-TCGA----GCATGCTGTCT-TCTGACAGCTCTTATT-TTA-TAAAGCACCTTAC-TGAACAA-AACTGATATTTTA
gi|10 : ttttgttagaatcaaaaccctttgtatacgaaaaaaattgagggtttttTTTTCGTT---CATTTTGCAGTCCT-T--TG-TTGC-GAGACAAGCT---TTC-----A--G-TAGA----GCATGCTGTCC-TTAG-CAGCTTTTGTT-TTcttg
gi|11 : tatgcgttgat---CATCAGACAG--TTAT--TGGTT-T-GAG----GTTCTCTCT-A-A-A--A-TCGA----GCGCGCTGTCC-TTTGACAGCTCTTGTT-g
gi|12 : cGT---CATCTGACAG--C-----------------CAAGTT---CTC-A-A-AT-G-TAGA----GCATACTGTCC-TCCGACAGCTCTTGTT-TTATAAAT--ATCCTAC-Tattgtatatgagc
gi|13 : aGT---TATCCGGTAG--CTCT--TG-TT-TTAAGACAAACT---TCG-G-C-A--G-T-GA----GCGTGCTGTCT-TTTGTCAGCTCTTGTT-Ttcaca
gi|14 : caTTATA----TGTTCTCATCTTGGTAACCACAAGTCAA-ACTGTGTATTGA--ATTT--TTG---AGACAGGTTTC
gi|15 : G--CCAT--TG-TT-TTGAGACAAGCT---TCCAA-A-A--G-TTAAACATGCCCACTTTCC-CCTGGCAGCT
gi|16 : TAT--TG-TT-TTGAGACAGGCT---TCCAA-A-A--A-TCCA----GCACACTGTTT-TCTGACA
gi|17 : TGT---CATCAGACCG--CTAT--TA-TT-TTGAAACAAGTT---TCC-AAA-A--G-TCGA----tag
gi|18 : -TT-T-TAGACAAGCT---TCC-A-A-A--GATTGA----GCATACTGTTT-TCTGCCAGCTCCTatatgc
gi|19 : -TCTA----GCGCGCTGTCCATCCGACAGCTCTTGTT-tt
gi|2 : ATT--TAT---AGAATG-CTTTATTTTAGTATCTAATTCTC-AT---AATGCGATAG--TTAT--TA-CT-T-AAGAAAAACT---TCC-A-ATC--G-TTGT----TCGTGCTGTCA-GTCGACCGCACTTA-T-TTGTT-----ATCTTATATAAAT-ATAACTA--ATTTTAatctgtattatagacatc
gi|20 : gctaacctaacttgttatactcagctTTCATAGTATTGACCAGTTGTCTAT---CATCCGACAG--CTTT--TG-TT-T-
gi|3 : tTTTATAG-AAGATTCTTATCATAGTAACCACTAGT----ACTATGCATTGA--ATTT--TTTG--AGATGGGCTTCATAACATTGTCCAGT--TCTGC---CGCCCACTAG--CTAT--TG-TTCT-GAGACATATT---TCC-A-A-AT-G-TTAA----GC
gi|4 : gtttaacGACAGGCTTCGTATTATTGTCCAGTTGTCTGT---CATCCAACAG--CCAT--TGTTT-T-GGGAT--GTT---T--------------------GCTTGTGGTCC-TCAGACAGCTCTtagatgttgt
gi|5 : attgtgtttttgggacatattttatattatcggGTCCAATT-TAAGT---AATCTGACAG--TTAA--TGCTT-T-GAGGCAGACT---GAG-A-A-AA-G-TCGA----GCGTGCTGTCC-TCCGACAGATCTTGTatatatatattac
gi|6 : -ACTGTGCCTTAATTAATTGATTG---AGACTGGATTCATAT---TGTTTAGTTAA--GT---CATTAGATAA--ATAT--TG-TT-T-GAGAAAAGCG---TCC-A-A-AT-A-TCGA----ACGCGCTGT-------AC--CTCTTGTT-TTGGTAAA--acataccggtattctttgttaaaagattgttatattttagttgttat
gi|7 : GT---CAGCTGATAG--CTAT--TG-TT-TCAAGACAAGCT---TAA-A-A-A--G-TTGA----GCATGTTGTTC-TCTGATAGCTTTGGTTACTGTTATG--ACATGAT-TTGAC-G-AA-TG--ATCTT
gi|8 : a---CATTTGAGAA--CTATAAT--TT-T-GAGACAAGCT----CC-A-A-AAAG-TCGA----GCGTGCTCTCG-TCCATTAGCTCTTGTT-TCATTCCA--ATCTGAT-TGAAC-A-Aggcatttttt
gi|9 : --AATT--TTTCATAG-CTGTCTTTATAGAATTGTCAAGATCTCAGT---CGTACCATTG--CTAT--TT-TT-T-AA-ACACGCT---TCC-A-A-GT-G-TCGA----GCGCGTTGTTC-TCCGACATCTcattttttgcatctt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|21 ): TTTTTAGACAAAATAAGTGAAAATGATTGAAA