lowQualScore : 11111111111
lowQualScore : 1 1 1111111 111111 111111111 7777 1 1 555555555555555555555555555555555555555555 11111 11111 1 2222222222222222222222 22222222222222222222222 1 22222222222222 11111111 1111111111 6666666 1 111 1 1 11 22222 44444444444 1 1 33 1
lowQualScore : 77 888888 33 6 88 8 2 33 5 2 2 88 2 2222222 444 444 222222 0 555555555 5 3 5 1111 3 2 4 44 7777777 1 2 77 2 33 4 7 77777 777777777777777777777777777777777777777777 555 55555 11111 555 88888 8888888 2 3 88 666 3 5 1111111111111111111111 55 1 11111111111111111111111 4 8888 44444444444444 55 5 3 4 66666666 7777777777 777 6 4 777 5555555 2 5 2 6 0 3 444 5 5 66 4 1 6 777 0 0 3 888 00 5 55 77 1 55555 6 1 5 1 0 22222222222 2 3 2 7 88 33 7
lowQualScore : .. ...... .. . .. . . .. . . . .. . ....... ... ... ...... . ......... . . . .... . . . .. ....... . . .. . .. . . ..... .......................................... ... ..... ..... ... ..... ....... . . .. ... . . ...................... .. . ....................... . .... .............. .. . . . ........ .......... ... . . ... ....... . . . . . . ... . . .. . . . ... . . . ... .. . .. .. . ..... . . . . . ........... . . . . .. .. .
lowQualScore : 33 222222 99 8 22 7 5 44 2 5 5 44 5 5555555 444 444 555555 9 333333333 7 8 7 4444 5 9 3 22 9999999 6 9 33 9 99 9 0 77777 222222222222222222222222222222222222222222 888 00000 77777 888 33333 4444444 7 6 66 444 3 0 8888888888888888888888 55 6 44444444444444444444444 0 5555 11111111111111 55 3 8 0 66666666 5555555555 000 0 0 000 1111111 3 9 4 6 5 6 444 6 0 11 4 1 3 444 2 0 4 888 55 0 11 22 9 88888 0 0 0 4 6 00000000000 2 0 8 0 55 33 0
consensus : TGATTTGATTCTTTATTTCC--TCC------TATGT--GGAGAGCACATACATACAAT-AGAATAACAA-ATTAC--AATATAAATAGAGA-AA-GA--A-ATA-------ATA---CA---TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAAT--A---TA--TGTTATGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATATTAAATG----------N------A---T-----T------T-A-----AT---G-----ATG-----A---C-----ATGATAACCGAACA-A-----CCAATCTTGTCGAAACGAAAT-ACAAGATATTAG--AAGGA---AATCAGTTCTACA-CGCAA--AA-TGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTA---NTCT-GTTT-AAG--ACCAAATTAGGTGCAGNGC-GC---G----AACAACCT----------TTACA---AGACAATTATG-AT---TTT-TNGTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTT-GCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAAT-TGATTTCC---AGAGATTTTC-TCTAACAGTTTC-AGATTCGTAACATTCTAAAATAAGATGTATAGTTATACAAATAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGNTATTTATAGTACTTTGACATTCAGTGGTATATCTAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
Reference ( gi|4 ) : TGATTTGATTCTTTATTTCC--TCC------TATGT--GGAGTGCACATACATACAAC-AGAATGACAA-ATTAC--AATTTAAATAGAGA-AA-GA--A-ATA-------ATA---CA---TA------TAACACAAGGC---------AAAATTAATAACA-ATTTTACGGTTACAATAT-AATGTACT--A---TA--TGTTATGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTCCATTTAAC-----ATATTAAATG----------G------A---T-----T------G-A-----AT---G-----ATG-----A---C-----ATGATAACCGAACA-A-----CCAATCTTGTTGAAACGAAAT-ACAAGATATTAG--AAGGA---AATTAGTTGTACA-AGAAA--AC-TGTCA------GTAT--TGATAAA-------A--GTAT---------ACTAAGCTACACT----GCACTTCGCATTTA---ATAT-GTTT-AAG--ACCAAATCAGGTGCAGAGC-GC---A----AACAACCT----------TTACA---AGACGATTATG-AT---TTC-T----TCATTGGTGACAATAGGTCTTAAGCCAATAATCAGTGCAATT-ATTT-ATATTTTAGGAGTAAGA--GCTACAAATGCGTTGAA-TGGTACAGGACCGA--TTATCGTATAAAT-TGTTTTCC---AGAGATTTTT-TTTAACAATTTC-AGATTCGTAACATTCTCAAATAAGATGTATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAATATGAATATGTCAGCATATGATATGTATAGTACTTTGTCATTCAGCGGTATATCTAGGGTAATGTTATGATAGATGCCAGAGTTCACAAACATT
gi|11 : TGATTTAATTTTTTATTTCC--TCC------TATGT--GGAGAGCACATACATACAAA-AGAATAACAA-ATTAC--AATATAAATAAAGA-AA-GA--A-ATA-------ATA---CA---TA------TAACACAAAAC-----------AATTAATAAAA-ATTTTAC----ACAATAT-AATGTAAT--G---TA--TGTTATGAGCAAAATAAATGTTATGC-TAAAAA-AA--TAAATTATACTTCATTAAAC-----ATATTAAATG----------T------A---T-----T------T-A-----AT---G-----ATG-----A---C-----ATGATAACTAAACA-C-----CCAATCTTGTCGAAACGAA-----AAGATATTAG--AAGGA---AATCAGTTCTACA-CGCAA--AA-TGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTATACT----GCACTTCGCATTTA---ATCT-------------CAAATAAGGTGCAGAGC-GC---G----AACAACCT----------TTACA---AGACAATTATG-GT---TTT-TGGTATCAATGGTGACAATCAGCCTTAAGCCATTAATCAGTGCAATT-ATT
gi|15 : TGATTGTATTCTTTATTTCA--TCC------TATAT--GAAGAGCACATACATACATT-AGAATAACAA-ATAAC--AAAATAAATAAGAA-AA-TA--A-ATA-------ATA---CA---TATGCATGTAATTTGAGGC---------AAACTGAATAACA-ATTGTA----TACGATAT-AATGCAAT--A---TA--TGTTATGAGCAAAATAAATATTATGC-T--AAA-AA--TAAA--ATTCTTCATTAAAC-----AAATTAAATG----------T------A---T-----T------G-A-----AT---G-----ATG-----A---C-----ATGATAACCGAATA-A-----C
gi|12 : tTGACTTGATT-TTGATTTTC--TCC------TATAT--GGAGATCATATACATACAAT-AAAATAACAA-TTTAC--AATATAATAAGAGA-TA-AA--A-ATATTG----AAA---AA---AA------TATCACAAAAC---------AAACTAAATATCA-GTTCTAC----ACAATTT-AATGT--T--A---CACCTGTTATTAGC-AAATAAAGATCATGT-T--AAA-AA--T------TACGTCATTAAAC-----ATG-TAAATT----------GTTAATAA---T-----T------T-T-----AT---AT----ATGTATATA---CAGATAATGATATCCAATCA-C-----ACAATATTGTCAAAACGAAAT-ACAAAATATCAGTTCAGGA---AATCAG-CG-ACA-TGGA----------A------GTAT--TCATAAA-------A---TAT---------ATTAATCTGTTTTTAAAGCATTTCAAATTTA---CTCTCTTTT-AAG--ACCAAATTCAGTAAAGTAC-TC---A----AACAACCA----------ATACG---AGATAATTTTG-ATATGTTA-T----TT-TTAATGATAACTGGTCTTAAt
gi|19 : tTGATTTGATTCTTTATTTCCC-TCC------TATGC--GGAGAGCACATACATACAAT-AAAATAACAA-ATAAC--AATATAAATAGAGA-CA-GA--A-ATA-------ATA---CA---TA------TAACACAAGGC---------AAAATGAATAACA-A--TTACCATT---------ATGTATTTGA---TA--T----TGAA-AAAATAAGTTTTATG
gi|14 : gtttTAATTTTATTCTTTATTTTC--TCA------TTTGT--GGAGAGCAAATACGTA-AACTAAAACATCAA-ATTAC--AATATAAATAGAGC-AA-AA--A-ATA-------ATAATGCA---TA------AAGTACAGAACAAGTAAAAAAAAACGAATATCA-ATTTTAC----ACAATCT-AATGCAAT--A---TA--TA----GGGCAAAATAAATTTCATGC------------TAAATTATACTCCATTAAAC-----ATATTAAATGTTTGT-----A------A---T-----TTTATACA-T-----AT---G-----ATG-----G---C-----ATGATACCTGAACA-A-----ACACTAGTTTTGAATCGTAGT-TCAATAAGTTAGA-AAGAA---AATCAGTTCTATA-tacaacgtttaacatttgtaatgttc
gi|18 : TGATTTGGTTCATCATTTCC--TTC------TATGC--TGAGAGCACATACATACAAT-AAAATAACAA-ATCAC--AATATAAATAGAGA-AATGAATA-ATA-------ATG---CA---TA------TATCACAAGGCGGCA-----AAAAGGAATATCA-ATTTTAC----ACAAT-T--ATGCAGT--A---TT--TGCTATTAGCAAACCAAATGTAATGC-T-TAAA-AT--CAAATTATATTTCATTcacca
gi|17 : ttTGATCTGATTCTTCATTTCC--TCC------TATATTGGGAAT--ATATACACTCAAT-GAAATAACAC-ATAAC--AATATAAATAGAGA-AA-AAT-A-CTA-------GTG---CA---TA------TATCACAAAAA---------CAAATGAATATCA-AGTTTAC----ACAATTTAAACGCAGT--A---CT--TGGTATTAACAATTTGAGGGTTATGC-T-ATAA-AT--TGAATTGTACTTCATTAAACTTTTTATATTAAATG----------
gi|21 : tTGATTTGATTCGTAATTTCT--TCCCTCTTGTATAT--GGAGAGCATATACATACAAT---AAT-ACAATAATACAAAATTAAAATAAAAATGA-GA--ACATATATTGATATA---CGATCTA------TACCACAAAAC---------AAAt
gi|6 : ttGATTTGATGCTTTATTTCC--TCC------TATGT--GGAGAGCACATACAAAAAAT-AGAATAACAA-ATTAC--AATATGAATAAAGA-AA-GA--A-ATA-------ATA---CA---TA------TAAAAAAAGGC---------AAAATGAATAACACATTTTAC----ACAATAT-AATGCAAT--A---AT--TGTTATGAACAAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACCTCATTAAAC-----ATTTTAAATG----------T------A---T-----T------T-A-----AT---G-----ATG-----A---C-----ATGATAACTGAACA-A-----CCAATCTTGTCGAAATGAAAT-ACAAGATATTAG--AAGGA---AATCAGTTCTACA-CGCAA--AA-TGTCAGTACCCGTAT--TTATAAA-------A--GCAT---------ACTTCGTTACACT----GCACTTCACATTTA---ATCT-GTTC-AAG--ATCAAATCAGGTGCAGAGC-GC---G----AACTACCT----------TTACA---AGACAATTACG-AT---TTT-TTGTATCATTGGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTT-GCATTTTGGGATTAAAGCTGCTACAAATGCGTTGAA-TGGCACAGGACAGT--TAATCATAT---T-TGATTTCC---AAAGACTTTC-TCTTATAGTTCC-GGATTTGTTACAc
gi|16 : GGTTTGATTCTTTATTTCC--ACC------TATGT--GGAAAGTACATACATACAAT-AGAATAACAA-ATTAC--AATATAAATAAAGA-AA-GA--C-ATA-------ATG---CA---TA------TAACAGAAAGC---------AAAATTTATA---------------ACAATAT-AATGTAAT--A---AA--TGATATGAGCAAAATAAATGTTATGCTT-AAAA-AG--TAAGTTATACTTCATTAAAC-----ATATTAAATG----------G------A---T-----T------G-A-----AT---G-----ATG-----A---C-----ATGATAACCGAACA-
gi|9 : TTGATTATTTATTTCC--TCC------TATGT--GGAGAGCACATACATACAAT-AGAATAACAA-ATTAC--AATATAAATAAAGA-AA-GA--A-ATA-------ATA---CA---TA------TAACACAAGGC---------ACAATTAATAACA-ATTTTAC----ACAATAT-AATGTAAT--ATATTA--TGTTATGAGCAATATAAATGTTATGC-TAAAAA-AA--TTAATTATACTTCATTAAAC-----ATATAAAATG----------A------T---T-----T------T-A-----AT---G-----ATG-----A---C-----ATGATAACCGAACA-A-----CCAATATTGTTGAAACGAAAT-AAAAGATATTAG--AAGGA---AATCAGTTCTAGA-CGCAA--AA-TGTCA------GTAT--TGATAAA-------A--TTAT---------ACTTAGCTACACT----GCACTTCCCATTTACCGGTA--ATCT---G--ATCAAATTAGGTGCAGAGC-GC---A----AACAATAT----------TTACA---AGACAATTATG-AT---TTT-TTGTATCATTTGTGACAATCGGTCTTAAGCCATTAATCAGTGCAATT-ATTT-GCATCTTAGGAGTAAGA--GCTACAAATGCGTTGAA-GGACACAGGGCC
gi|22 : GATTCTTTATTTCC--TCC------TGCAC--GGAGAG--CATACATACAAT-AAAA--ACAA-TTTAC--AATGTTACTAGAG---A-GA--A-ACA-------CTG---CT---CA------TAAT------C---------GAAATAACTATCA-ATTCTAC----ACAACTT-GATG
gi|1 : aactaATTTCTTATTTCGAATTG------TAT-T--AGAG--CACATACATACAAT-AAAATATCAA-ATTAC--AATATAAATAAAGA-AA-GA--A-ATA-------ATA---TA---TA------TAGCACATGGC---------AAAATTAACAACA-ATTTTAC----ACAATAT-AATTCAGT--A---TT--TGTTATGAGCAAAATAAAAGTTATGC-T-AAAG-AAATTGAATTATACTTCATTAAAC-----ATATTAAATGTTTTTA----A------A---T-----T------T-ATACATAT---G-----ATG-----A---C-----ATGATACCCGAACA-A-----CCAATCTGGTCGAAACGAAAT-ACAAGACATGAG--AAGGA---AATCAGTTCTACACACAAA--A--TGTCA------GTAT--TGTTACA-------A--TTAT---------ACTCAGCTACACT----GCACGTCGCATTTA---CTCT-GTTT-AAG--ACCAAACTAGGTGCAGTGC-GC---T----AACAACCT----------TTACA---AGACAATTATGTAT---TTT-TGTA-TCATTAGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTT-GCATATTAGGATTAATA--ACTATAAATGCGTCGAA-TGGCACAAGACTGA--TTATCGTATAAAT-TG-AATCC---AGAGATTTTC-TCTAACAA-TTC-AGATTCGTAACATTTTAGAATAAGATGTATAGATATACAAGTAA-ACATCTGTTACAGTTTGGACAAATCTTTGTTAACGTGACGCTGAAGA-GA------CGGCATATGATATTTATTATACTTCGACATTCAGTAGTATATCTAGGGTATAGTTTTGATAGATGTCAGAGTTCACAAACATT
gi|2 : aCC------TATGT--GGAGAGCACATACATATAAT-AGAATAACAA-ATTAC--AATATGAATAAAGA-AA-GA--A-ATA-------ATA---CA---TA------TAACACAAGGC---------AAAATTAACAACA-ATTTTACAG----AATAT-AATGTAAT--A---TA--TGTTATGTGCAAAATAAATGTTATAA-T-AAAAGAA--TAAATTATACTTCATTAAAC-----ATATAAAATG----------T------A---T-----T------T-A-----AT---G-----ATG-----A---C-----ATG-TAACCAAACA-C-----CCAATCTTGTCGAAACGAAAT-ACAAGATATTAG--AAGGAAATAATCAATTCTACA-CGCAA--AA-TGTCA------GTAT--TGATAAA-------A--GTA-----------------TACACT----GCACTTCGCATTTA---ATCT-GTCT-TAG--ACCAAATTAGGCGTAGAGC-GC---G----AACAACCT----------TTACA---AGACAATTATG-AT---TTT-TGTG-TCATTGGTGACAATAGGCCTTAAGCC------------------------ATCTTAGGAGAGAGA--GCTGCAAATGCATTGAA-TGGCACAGGACCGA--TTATCGTATACAT-TGATTTCC---AGAGATTTTC-TATAACAATTTC-AGATTCGTAACATTCTAAAATAAGATGTATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGAGAACGTGTCGCTGAAGA-GA------CGGCATATGCTATTTATAGTAGTTTGACATTCAGCGGTATATCTAGGGTATAGTTTTAATATGTGCCAGAGTTCACAAACATTgttcaacattggtttgacagaaataaaatgtgtaagggaactatctaggtatatactatatgaccaattactctctccaactcta
gi|8 : AT-AGAATAACAA-ATAAC--AATATAAATAAAGA-AA-GA--A-ATA-------ATA---CA---TAATTA--TAATACAAGGT---------AAAATGAATAACACATTTTAA----ACATTAT-AATGCAAT--A---AA--TGTTATGAGCGAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACTTCATTAAAC-----ATATTAAATG----------T------A---T-----T------T-A-----AT---G-----ATG-----A---C-----ATGATAACCGAACA-A-----CCAATCTTGTCGAAATGAAAT-ACAAGATATTAG--AAGGA---AATCAGTTCTACA-CGCAA--AA-TGCCA------GTAT--TTTTAAA-------A--ACAT---------ACTTAGCT-----------ACTTCACATTTA---ATCT-GTTT-AAG--ATCAAAGTAGGTCCAGTGC-AT---G----AACAACCT----------TTACA---AGACAATTATG-AT---TTT-TTGTATCATTGGTGACAGTAGGCCTTAAGTCGTTAATCAGTGCAATT-ATTT-GTGTCTTGGGATTAAGA--GCTACAAATGTGTTGAA-TGGCACAGGACAGT--TTATCATATATTT-TGATTTCC---AGAGACTTTC-TTTAACAGTTCC-AAATTTGTAACAgtacaacattggtttgacagaaataaattctgtaagggtactgtctaggtatattctatttgaccaattactctcttcagctcagttgatattggtgtta
gi|23 : ATAACAA-ATTAC--TATATAAATAGAGA-AA-AAT-A-ATA-------ATA---CA---TA------TATCACAAGAC---------AAAATT
gi|5 : TATGAGCAAAA-AAATGTCAGGC-T-AGAA-AT--TAAAGTATATTTCATTAAAC-----ATAGTAA-TA----------A------AGTTT-----T------GTA-----ATTTTGTTCATATG-----ATTTC-----ATGATACCCAATCA-A-----CTAATCCTGCCGAAACAAAAT-ACAAGATATAAG--AAGGA---ACTCAATTCTACA-C--AC--AC-TGT--------GTAT--TAATTTG-------TTTGTAA---------ACTTTGCAACAGT----ACACTGCACATTTC----TGT-GTTTTAAG--ACTAAATTAGGTGCAGTGC-GC---G----AACACCCG----------TTACA---AGACAATCGTG-AT---TTTGTA---TCATTG---ACCATAAGCCTTAA--------TCGGTGCAAAT-ATTT-GCATCTTTGGTTTGAGA--ACTACAAATGCGTTGAA-TGGTACATGACCAC--TTATTGTTTGAATCTATTTT-A---AGATATTTTT-CCCAACATATTC-TGATTCGCTACATTC-----TAAAATGTAAAGTTATATAAACAACAACTCTGTTGCACTTAAGACAAGCCTTTGTGAACGCATCGCTTAAGA-GA------CGGCATATTCTATATACAGTACGTTGACATTCACTGGTATATCTAGGGTA
gi|13 : ttaTTAT-C-T-AAAA-TA---AAACCGCACGTAATTAAAC-----ATGTTAAATATCAGTTGTTTG------A---TACACAT------G-A-----AT---AT----ATGT----A---C-----ATATTAAC---ATATATTTGTCCAAGCTTGTTAAAGCACAGT-AAAATATATTGG--AA---------TAGCT-TATC-AGAAACGATATGTAA------GTATATTTATAAACTATATTA--ATATGTTAATGAAACTTAGCTACACT----GCGCTGCGTATTTA---CTTT-ATT---AA--AC----TTAG-TGC---GCTAC---ATTGTAACAACCTACATGTGTATTTACA---CGACAATTAGT-AT---TTA--------ATT----ACAATTGATATCAAGCCATTTATCAGTGAAATA-ATTG-GAATCTTAGGATTAtttcgcaaacattgctgaacattgattttacttgaacagaattggtaagagtactctgtgtttattctatttgactaataactttcttcaactctgttagtattgataattatcagttccttccatttaaattaagatagcaaaatgcgctaaacattcagatata
gi|7 : ttCAAACA-A-----TAAATTCTG------CGAAATGAC--GCTATTGG--AGAGA---AATTA----TAAA-AAAAA--AC--------------AT--TGATATA-------C--ATTT----------CTTAGCCACATT----CTATTTCGCATATA---CTCT-GG---AAGCGATCATGTTCAGTGCAGAGG-ACTTGA----AAAAA--------------TATATTGAGATAATTACG-AT---TTC-TACT-TCATCAGT--CAAT----CTTAAGCCATTAATCA-TTTAATTAATTTGAT-TCTCAGAAGTGAGG--CCAACACGTCCG-TGAA-T-----AAATCCGAGTTTGTGGTATAAATATATTT--CAGGAGAGGTTCTCACTTAATAAGCTCTAGA
gi|3 : tataGCCATTAAACAGTGAAATT-ATTT-GCTTCTTATGATTAAGA--GCTACAAATGCGTTGAAATGGCACAGAATCGA--TTATCGTATAAAT-TGATTTCT---AGAGATTTTA-TAGAACAGTTTT-AGGTTCGTAATATTCTAAAATAAGATGTATAGTTATACAAAGAACACTTCTGTTACATTTTTAACACATGTTTGTGAACGTGTCACTGAAGA-GA------CAACATATGATATTTATAGTACTTTGACATTCAGT-GTATATCTTGGGTACAGTTTTGATAGATGCCAGAGTTTACCAAAATTatgaaatgaaaaaaatatataaataaatagtttacgactcttaaaggatggcgtataaaaaatacagtatttgtatttcttaaggtatacttttatagctgcttgatttcacatacattatataacatgtgtttaaatgaaacgaaatcagcaagagtctgtataaattcatttattcggtttgaacaaatgactctcttctactctgttaacctttatgtttatatatctttcccattt
gi|20 : cTGAAATT-ATCG-GCATCTTAGGCGTGAGG--TCTACAAATGTGTTAAA-T----CAGGAATAA--TCATGGTGTAAAT-TGATTCCA---AGATATGTTC-TCTTGCAGTGTC----TTTTTCAC-TTCAC--------TCTA----CATACAAATACGATCTCTGTTA-ATTAAGGACACCGTTTTGTAAGCGTGTCGCTAAAgaacaacattggtttgacagacataaaatatgtaagggtactatctaggtatattctatttaacaacttactatttttaactctgttatataaaagtttttttttccatttaaattcccaaaacagcaaagccactcagaatcgaagatagagaatacttattaaaatacgcataatatccggtatgaaaccgagttgatttgatggatgagtttgatattggaaaagcctgtaaataaaaatatgtgttactctttggttacagtttgaccgacacaattaaccaaaaaatgacatttttctttcatcaattaaaatttctaaagtctgtgactcaaatttatcttaaacacacgccagttctgttatacactggtacatattgcattattttaacaaaaaaaaacacacaattgtttggatttttctagtgttaacatttgctgtttggttt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): GTATTTCTTAAGGTATACTTTTATAGCTGCTTGATTTCACATACATTATATAACATGTGTTTAAATGAAACGAAATCAGCAAGAGTCTGTATAAATTCATTTATTCGGTTTGAACAAATGACTCTCTTCTACTCTGTTAACCTTTATGTTTATATATCTTTCCCATTTTACTTTTATTTTATTTTATCGAAAGCAACGAAGTCAATCTATGTTGAATGTAGAAACTAGTACACATCATGTGGACAGGCGTATATATCGGGTGAAGAGCGAATTGATTCTTTAGTGAGCTATGTGCTTTCAAAGATTTTATCATATATCACTGGTATCGCATAAGTTTGTGAATAGAAATATATGGTCGCAGGTTGACCGATACAAGCGACAAGTATTCACTAATTTAATAACATTTTGATATTTTGTGAATCAGTTAAAATCAAACCGATTCTAGTATACATTTCGTCATATTGGATTATTTTAACAACACAAAA
Alignments
lowQualScore : 11 111111111 1111 3333333333333333333 11111 111111 11111111111 111111111 111 1111111111 1 111111
lowQualScore : 66 777777 444 444 2 2 00 444 444 55555 5555 666666 0 444444444 3 1 5 5555 1 2 2 555 1 2 2 33 2 66 77777 2 33 2222 1111111111111111111 88888 888 77777 555 77777 555 2 999999999 77 44 555 1 0 1 000000 55 0 55555555555 444444444 7777 1 777777 111 1 55 333 5555555555 666 3 7 5 3 1 55 4 66 0 0 22 1 2 3 5 1 1 7 3 5 666666 1 3 1 5 6 3
lowQualScore : .. ...... ... ... . . .. ... ... ..... .... ...... . ......... . . . .... . . . ... . . . .. . .. ..... . .. .... ................... ..... ... ..... ... ..... ... . ......... .. .. ... . . . ...... .. . ........... ......... .... . ...... ... . .. ... .......... ... . . . . . .. . .. . . .. . . . . . . . . . ...... . . . . . .
lowQualScore : 88 777777 444 111 4 4 33 111 111 99999 0000 888888 3 444444444 8 3 3 7777 1 7 0 000 0 7 7 55 7 33 11111 9 99 1111 9999999999999999999 55555 555 77777 444 77777 444 3 222222222 99 66 888 2 4 4 555555 00 5 88888888888 555555555 7777 0 777777 444 0 00 999 9999999999 444 6 7 8 3 9 55 0 11 1 8 99 1 3 6 7 9 9 9 0 7 444444 0 7 7 2 7 2
consensus : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA----T------AACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TG-----T------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-ATTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
Reference ( family-1722 ) : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA----T------AACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATAT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TG-----N------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTANTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-ATTTTTNGTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAATAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGNTATTTATAGTACTTTGACATTCAGTGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
gi|1 : ATTTCTTATTTCGAATTG------TAT-T--AGAGCACATACATACAATAA---AATATC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---TA-----TA----T------AGCACATGGC---------AAAATTAACAACA-ATTTTAC----ACAATAT-AATTCAGTATTT---GTTA-TGAGCAAAATAAAAGTTATGC-T-AAAG-AAATTGAATTATACTTCATTAAAC-----ATA-T--TAAA----TG-----TTTTTAAA------TTTATACATATG---ATG-----A---C-----ATG---ATACCCGAACA---A-----CCAATCTGGTCGAAACGAAATACAAGACATGAG--AA--GGA---AATCAGTTCTACACACAAAATGTCA------GTAT--TGTTACA-------A--TTAT---------ACTCAGCTACACT----GCACGTCGCATTTACTCT-GTTT-AA---GACCAAACTAGGTGCAGTG--CGC-T-AACAACCT----------TTACA---AGACAATTATGTATTTTT-GTATCATTAGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATATTAGGATTAATA--ACTATAAATGCGTCGAA-TGGCACAAGACTGA--TTATCGTATAAATTGA-ATCCAGAGATTTTCTCTAACAA-TTCAGATTCGTAACATTTTAGAATAAGATG-TATAGATATACAAGTAA-ACATCTGTTACAGTTTGGACAAATCTTTGTTAACGTGACGCTGAAGA-GA------CGGCATATGATATTTATTATACTTCGACATTCAGTAGTATATC-TAGGGTATAGTTTTGATAGATGTCAGAGTTCACAAACATT
gi|11 : aTGATTTAATTTTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAAAAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA----T------AACACAAAAC-----------AATTAATAAAA-ATTTTAC----ACAATAT-AATGTAATGTAT---GTTA-TGAGCAAAATAAATGTTATGC-TAAAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TG-----T------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTAAACA---C-----CCAATCTTGTCGAAACGAA----AAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTATACT----GCACTTCGCATTTAATCT--------------CAAATAAGGTGCAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-GTTTTTGGTATCAATGGTGACAATCAGCCTTAAGCCATTAATCAGTGCAATT-ATTgttcaacattggtttgacagaaataaaatgtgtaagggaactatctaggtatatactatatgaccaattactctctccaactcta
gi|12 : TGACTTGATT-TTGATTTTC--TCC------TATATGGAGATCATATACATACAATAA---AATAAC---AATTTACAATATAATAAGAGAT-A-AA--AATATTGAAA---AA-----AA----T------ATCACAAAAC---------AAACTAAATATCA-GTTCTAC----ACAATTT-AATGTTACACCT---GTTA-TTAGC-AAATAAAGATCATGT-T--AAA-AA--T------TACGTCATTAAAC-----ATG-T--AAAT----TGTTAATA------A------TTTT-----ATAT--ATGTATATA---CAGATAATG---ATATCCAATCA---C-----ACAATATTGTCAAAACGAAATACAAAATATCAGTTCA--GGA---AATCAG--CGACATGGA-------A------GTAT--TCATAAA-------A---TAT---------ATTAATCTGTTTTTAAAGCATTTCAAATTTACTCTCTTTT-AA---GACCAAATTCAGTAAAGTA--CTC-A-AACAACCA----------ATACG---AGATAATTTTG-ATATGT--TATTTTTAATGATAACTGGTCTTAA
gi|13 : tTTAT-C-T-AAAA-TA---AAACCGCACGTAATTAAAC-----ATG-T--TAAA----TA-----TCAGTT-G------TTTG-----ATACACATG-----AATAT-----ATGTACATA--TTAACATATATTTGTCCAAGCTTGTTAAAGCACAGTAAAATATATTGG--AATAGCT---TATCAG----AAACG--ATATGTAA------GTATATTTATAAACTATATTA--ATATGTTAATGAAACTTAGCTACACT----GCGCTGCGTATTTACTTT-ATT---A---AAC----TTAG-TGCGCTA--CATTGTAACAACCTACATGTGTATTTACA---CGACAATTA----------GTAT--TTAATTACAATTGATATCAAGCCATTTATCAGTGAAATA-ATTGGAATCTTAGGATTA
gi|14 : ttTAATTTTATTCTTTATTTTC--TCA------TTTGTGGAGAGCAAATACGTAAACTAA---AACATC---AAATTACAATATAAATAGAGCA-A-AA--AATA---ATAATGCA-----TA----A------AGTACAGAACAAGTAAAAAAAAACGAATATCA-ATTTTAC----ACAATCT-AATGCAATATAT---A-----GGGCAAAATAAATTTCATGC------------TAAATTATACTCCATTAAAC-----ATA-T--TAAATGTTTG-----T------AAT----TTTATACATATG---ATG-----G---C-----ATG---ATACCTGAACA---A-----ACACTAGTTTTGAATCGTAGTTCAATAAGTTAGA-AA--GAA---AATCAGTTCTATACAC
gi|15 : TGATTGTATTCTTTATTTCA--TCC------TATATGAAGAGCACATACATACATTAG---AATAAC---AAATAACAAAATAAATAAGAAA-A-TA--AATA---ATA---CA-----TA----TGCATGTAATTTGAGGC---------AAACTGAATAACA-ATTGTAT----ACGATAT-AATGCAATATAT---GTTA-TGAGCAAAATAAATATTATGC-T--AAA-AA--TAAA--ATTCTTCATTAAAC-----AAA-T--TAAA----TG-----T------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAATA---A-----Cca
gi|16 : tGGTTTGATTCTTTATTTCC--ACC------TATGTGGAAAGTACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--CATA---ATG---CA-----TA----T------AACAGAAAGC---------AAAAT----------TTATA-----ACAATAT-AATGTAATAAAT---GATA-TGAGCAAAATAAATGTTATGCTT-AAAA-AG--TAAGTTATACTTCATTAAAC-----ATA-T--TAAA----TG-----G------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---t
gi|17 : TGATCTGATTCTTCATTTCC--TCC------TATATTGGGAATATATACACTCAATGA---AATAAC---ACATAACAATATAAATAGAGAA-A-AAT-ACTA---GTG---CA-----TA----T------ATCACAAAAA---------CAAATGAATATCA-AGTTTAC----ACAATTTAAACGCAGTACTT---GGTA-TTAACAATTTGAGGGTTATGC-T-ATAA-AT--TGAATTGTACTTCATTAAACTTTTTATA-T--TAAA----TG-----
gi|18 : tTGATTTGGTTCATCATTTCC--TTC------TATGCTGAGAGCACATACATACAATAA---AATAAC---AAATCACAATATAAATAGAGAA-ATGAATAATA---ATG---CA-----TA----T------ATCACAAGGCGGCA-----AAAAGGAATATCA-ATTTTAC----ACAAT-T--ATGCAGTATTT---GCTA-TTAGCAAACCAAATGTAATGC-T-TAAA-AT--CAAATTATATTTCATTt
gi|19 : ttTGATTTGATTCTTTATTTCCC-TCC------TATGCGGAGAGCACATACATACAATAA---AATAAC---AAATAACAATATAAATAGAGAC-A-GA--AATA---ATA---CA-----TA----T------AACACAAGGC---------AAAATGAATAACA-A--TTAC-----CATTAT-------GTATTT---GATATTGAA-AAAATAAGTTTTATG
gi|2 : gtttCC------TATGTGGAGAGCACATACATATAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA----T------AACACAAGGC---------AAAATTAACAACA-ATTTTAC----AGAATAT-AATGTAATATAT---GTTA-TGTGCAAAATAAATGTTATAA-T-AAAAGAA--TAAATTATACTTCATTAAAC-----ATA-T--AAAA----TG-----T------A------TTTA-----ATG---ATG-----A---C-----ATG----TAACCAAACA---C-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGAAATAATCAATTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTA-----------------TACACT----GCACTTCGCATTTAATCT-GTCT-TA---GACCAAATTAGGCGTAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-ATTTTT-GTGTCATTGGTGACAATAGGCCTTAAGC-----------------------CATCTTAGGAGAGAGA--GCTGCAAATGCATTGAA-TGGCACAGGACCGA--TTATCGTATACATTGATTTCCAGAGATTTTCTATAACAATTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGAGAACGTGTCGCTGAAGA-GA------CGGCATATGCTATTTATAGTAGTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTAATATGTGCCAGAGTTCACAAACATTtacaacgtttaacatttgtaatgttc
gi|20 : TGAAATT-ATCGGCATCTTAGGCGTGAGG--TCTACAAATGTGTTAAA-T----CAGGAATAA--TCATGGTGTAAATTGATTCCAAGATATGTTCTCTTGCAGTGTCTTTTTCACTTCACTCTA-----------------CATACAAATACGATCTCTGTTA-ATTAAGGACACCGTTTTGTAAGCGTGTCGCTAAAGA-GA------CGGCgtacaacattggtttgacagaaataaattctgtaagggtactgtctaggtatattctatttgaccaattactctcttcagctcagttgatattggtgtta
gi|21 : TGATTTGATTCGTAATTTCT--TCCCTCTTGTATATGGAGAGCATATACATACAATAATACAATAATACAAAATTAAAATAAAAAT-GAGAACA-TAT-ATTG---ATA---TACGATCTA----T------ACCACAAAAC---------AAA
gi|22 : ttGATTCTTTATTTCC--TCC------TGCACGGAGAG--CATACATACAATAA---A--AAC---AATTTACAATGTTACTAGAG---A-GA--AACA---CTG---CT-----CA----T------AAT------C---------GAAATAACTATCA-ATTCTAC----ACAACTT-GATGc
gi|23 : aactaATAAC---AAATTACTATATAAATAGAGAA-A-AAT-AATA---ATA---CA-----TA----T------ATCACAAGAC---------AAAAT
gi|3 : GCCATTAAACAGTGAAATT-ATTTGCTTCTTATGATTAAGA--GCTACAAATGCGTTGAAATGGCACAGAATCGA--TTATCGTATAAATTGATTTCTAGAGATTTTATAGAACAGTTTTAGGTTCGTAATATTCTAAAATAAGATG-TATAGTTATACAAAGAACACTTCTGTTACATTTTTAACACATGTTTGTGAACGTGTCACTGAAGA-GA------CAACATATGATATTTATAGTACTTTGACATTCAGT-GTATATC-TTGGGTACAGTTTTGATAGATGCCAGAGTTTACCAAAATTt
gi|4 : cTGATTTGATTCTTTATTTCC--TCC------TATGTGGAGTGCACATACATACAACAG---AATGAC---AAATTACAATTTAAATAGAGAA-A-GA--AATA---ATA---CA-----TA----T------AACACAAGGC---------AAAATTAATAACA-ATTTTACGGTTACAATAT-AATGTACTATAT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTCCATTTAAC-----ATA-T--TAAA----TG-----G------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTTGAAACGAAATACAAGATATTAG--AA--GGA---AATTAGTTGTACAAGAAAACTGTCA------GTAT--TGATAAA-------A--GTAT---------ACTAAGCTACACT----GCACTTCGCATTTAATAT-GTTT-AA---GACCAAATCAGGTGCAGAG--CGC-A-AACAACCT----------TTACA---AGACGATTATG-ATTTCT----TCATTGGTGACAATAGGTCTTAAGCCAATAATCAGTGCAATT-ATTTATATTTTAGGAGTAAGA--GCTACAAATGCGTTGAA-TGGTACAGGACCGA--TTATCGTATAAATTGTTTTCCAGAGATTTTTTTTAACAATTTCAGATTCGTAACATTCTCAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAATATGAATATGTCAGCATATGATATGTATAGTACTTTGTCATTCAGCGGTATATC-TAGGGTAATGTTATGATAGATGCCAGAGTTCACAAACATTgaacaacattggtttgacagacataaaatatgtaagggtactatctaggtatattctatttaacaacttactatttttaactctgttatataaaagtttttttttccatttaaattcccaaaacagcaaagccactcagaatcgaagatagagaatacttattaaaatacgcataatatccggtatgaaaccgagttgatttgatggatgagtttgatattggaaaagcctgtaaataaaaatatgtgttactctttggttacagtttgaccgacacaattaaccaaaaaatgacatttttctttcatcaattaaaatttctaaagtctgtgactcaaatttatcttaaacacacgccagttctgttatacactggtacatattgcattattttaacaaaaaaaaacacacaattgtttggatttttctagtgttaacatttgctgtttggttt
gi|5 : TA-TGAGCAAAA-AAATGTCAGGC-T-AGAA-AT--TAAAGTATATTTCATTAAAC-----ATAGTAATAAAGTTTTG-----T------AATTTTGTTCAT----ATG---ATT-----T---C-----ATG---ATACCCAATCA---A-----CTAATCCTGCCGAAACAAAATACAAGATATAAG--AA--GGA---ACTCAATTCTACACACAC--TGT--------GTAT--TAATTTG-------TTTGTAA---------ACTTTGCAACAGT----ACACTGCACATTT-CTGT-GTTTTAA---GACTAAATTAGGTGCAGTG--CGC-G-AACACCCG----------TTACA---AGACAATCGTG-ATTTT--GTATCATTGA----------CCATAAGCC-TTAATCGGTGCAAAT-ATTTGCATCTTTGGTTTGAGA--ACTACAAATGCGTTGAA-TGGTACATGACCAC--TTATTGTTTGAATCTATTTTAAGATATTTTTCCCAACATATTCTGATTCGCTACATTCTAAAAT-----G-TAAAGTTATATAAACAACAACTCTGTTGCACTTAAGACAAGCCTTTGTGAACGCATCGCTTAAGA-GA------CGGCATATTCTATATACAGTACGTTGACATTCACTGGTATATC-TAGGGTAT
gi|6 : ttaGATTTGATGCTTTATTTCC--TCC------TATGTGGAGAGCACATACAAAAAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA----T------AAAAAAAGGC---------AAAATGAATAACACATTTTAC----ACAATAT-AATGCAATAATT---GTTA-TGAACAAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACCTCATTAAAC-----ATT-T--TAAA----TG-----T------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCAGTACCCGTAT--TTATAAA-------A--GCAT---------ACTTCGTTACACT----GCACTTCACATTTAATCT-GTTC-AA---GATCAAATCAGGTGCAGAG--CGC-G-AACTACCT----------TTACA---AGACAATTACG-ATTTTTTGTATCATTGGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATTTTGGGATTAAAGCTGCTACAAATGCGTTGAA-TGGCACAGGACAGT--TAATCATAT---TTGATTTCCAAAGACTTTCTCTTATAGTTCCGGATTTGTTACAttcgcaaacattgctgaacattgattttacttgaacagaattggtaagagtactctgtgtttattctatttgactaataactttcttcaactctgttagtattgataattatcagttccttccatttaaattaagatagcaaaatgcgctaaacattcagatata
gi|7 : CAAACA---A-----TAAATTCTG-CGAAATGA----C--GCTATTGG--AG--AGA---AATTA----TAAA---AAAA----A------ACAT--TGATATA-------C--ATTT----------CTTAGCCACATT----CTATTTCGCATATACTCT-G--G-AAGC-GATCATGTTCAGTGCAGAGGACTT-G-AAAAAA-------------TATATTGAGATAATTACG-ATTTCTACT-TCATCAGT--CAAT----CTTAAGCCATTAATCA-TTTAATTAATTTGATTCTCAGAAGTGAGG--CCAACACGTCCG-TGAA-T-----AAATCCGAGTTTGTGGTATAAATATATTTCAGGAGAGGTTCTC--AC---------TTAATAA-GCTCTAGAATGAAATGAAAAAAATATATAAATAA----------ATAGTTT--ACGACTCTT----------------AAAG-GA------TGGCGTATAAAAAATACAGTATTT------------GTATTTCTTAAGGTATACTTTT-ATAGCTGCTTGATTTCACATACATT
gi|8 : tataATAG---AATAAC---AAATAACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TAATTAT------AATACAAGGT---------AAAATGAATAACACATTTTAA----ACATTAT-AATGCAATAAAT---GTTA-TGAGCGAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACTTCATTAAAC-----ATA-T--TAAA----TG-----T------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGCCA------GTAT--TTTTAAA-------A--ACAT---------ACTTAGCT-----------ACTTCACATTTAATCT-GTTT-AA---GATCAAAGTAGGTCCAGTG--CAT-G-AACAACCT----------TTACA---AGACAATTATG-ATTTTTTGTATCATTGGTGACAGTAGGCCTTAAGTCGTTAATCAGTGCAATT-ATTTGTGTCTTGGGATTAAGA--GCTACAAATGTGTTGAA-TGGCACAGGACAGT--TTATCATATATTTTGATTTCCAGAGACTTTCTTTAACAGTTCCAAATTTGTAACAatataacatgtgtttaaatgaaacgaaatcagcaagagtctgtataaattcatttattcggtttgaacaaatgactctcttctactctgttaacctttatgtttatatatctttcccattt
gi|9 : TTGATTATTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA----T------AACACAAGGC---------ACAATTAATAACA-ATTTTAC----ACAATAT-AATGTAATATATTATGTTA-TGAGCAATATAAATGTTATGC-T-AAAA-AAA-TTAATTATACTTCATTAAAC-----ATA-T--AAAA----TG-----A------T------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATATTGTTGAAACGAAATAAAAGATATTAG--AA--GGA---AATCAGTTCTAGACGCAAAATGTCA------GTAT--TGATAAA-------A--TTAT---------ACTTAGCTACACT----GCACTTCCCATTTAC-CG-G--T-AATCTGATCAAATTAGGTGCAGAG--CGC-A-AACAATAT----------TTACA---AGACAATTATG-ATTTTTTGTATCATTTGTGACAATCGGTCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGAGTAAGA--GCTACAAATGCGTTGAA-GGACACAGGGCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATTTCTTAAGGTATACTTTTATAGCTGCTTGATTTCACATACATTATATAACATGTGTTTAAATGAAACGAAATCAGCAAGAGTCTGTATAAATTCATTTATTCGGTTTGAACAAATGACTCTCTTCTACTCTGTTAACCTTTATGTTTATATATCTTTCCCATTTTACTTTTATTTTATTTTATCGAAAGCAACGAAGTCAATCTATGTTGAATGTAGAAACTAGTACACATCATGTGGACAGGCGTATATATCGGGTGAAGAGCGAATTGATTCTTTAGTGAGCTATGTGCTTTCAAAGATTTTATCATATATCACTGGTATCGCATAAGTTTGTGAATAGAAATATATGGTCGCAGGTTGACCGATACAAGCGACAAGTATTCACTAATTTAATAACATTTTGATATTTTGTGAATCAGTTAAAATCAAACCGATTCTAGTATACATTTCGTCATATTGGATTATTTTAACAACACAAAA
Alignments
lowQualScore : 11 111111 111111111 1111 2222222222222 11111 111111 11111111111 111111111 111 1111111111 1 111111
lowQualScore : 66 777777 444 444 2 2 00 444 444 55555 111111 0 444444444 3 1 5 5555 1 2 1 555 1 2 2 33 2 66 77777 2 33 2222 9999999999999 88888 888 77777 555 77777 555 2 999999999 77 44 555 1 0 1 000000 55 0 55555555555 444444444 7777 1 777777 111 1 55 333 5555555555 666 3 0 44 5 3 1 55 4 66 0 0 22 1 2 3 5 1 1 7 3 5 666666 1 1 77 6 3
lowQualScore : .. ...... ... ... . . .. ... ... ..... ...... . ......... . . . .... . . . ... . . . .. . .. ..... . .. .... ............. ..... ... ..... ... ..... ... . ......... .. .. ... . . . ...... .. . ........... ......... .... . ...... ... . .. ... .......... ... . . .. . . . .. . .. . . .. . . . . . . . . . ...... . . .. . .
lowQualScore : 88 777777 444 111 4 4 33 111 111 99999 888888 3 444444444 8 3 3 7777 1 7 0 000 0 7 7 55 7 33 11111 9 99 1111 7777777777777 55555 555 77777 444 77777 444 3 222222222 99 66 888 2 4 4 555555 00 5 88888888888 555555555 7777 4 777777 444 0 00 999 9999999999 444 6 9 22 8 3 9 55 0 11 1 8 99 1 3 6 7 9 9 9 0 7 444444 0 7 33 7 2
consensus : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
Reference ( family-1722 ) : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
gi|1 : ATTTCTTATTTCGAATTG------TAT-T--AGAGCACATACATACAATAA---AATATC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---TA-----TA------TAGCACATGGC---------AAAATTAACAACA-ATTTTAC----ACAATAT-AATTCAGTATTT---GTTA-TGAGCAAAATAAAAGTTATGC-T-AAAG-AAATTGAATTATACTTCATTAAAC-----ATA-T--TAAA----TGTTTTTAAA------TTTATACATATG---ATG-----A---C-----ATG---ATACCCGAACA---A-----CCAATCTGGTCGAAACGAAATACAAGACATGAG--AA--GGA---AATCAGTTCTACACACAAAATGTCA------GTAT--TGTTACA-------A--TTAT---------ACTCAGCTACACT----GCACGTCGCATTTACTCT-GTTT-AA---GACCAAACTAGGTGCAGTG--CGC-T-AACAACCT----------TTACA---AGACAATTATGTA-TTTTT-GTATCATTAGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATATTAGGATTAATA--ACTATAAATGCGTCGAA-TGGCACAAGACTGA--TTATCGTATAAATTGA-ATCCAGAGATTTTCTCTAACAA-TTCAGATTCGTAACATTTTAGAATAAGATG-TATAGATATACAAGTAA-ACATCTGTTACAGTTTGGACAAATCTTTGTTAACGTGACGCTGAAGA-GA------CGGCATATGATATTTATTATACTTCGACATTCAGTAGTATATC-TAGGGTATAGTTTTGATAGATGTCAGAGTTCACAAACATT
gi|11 : aTGATTTAATTTTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAAAAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAAAC-----------AATTAATAAAA-ATTTTAC----ACAATAT-AATGTAATGTAT---GTTA-TGAGCAAAATAAATGTTATGC-TAAAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTAAACA---C-----CCAATCTTGTCGAAACGAA----AAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTATACT----GCACTTCGCATTTAATCT--------------CAAATAAGGTGCAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-G-TTTTTGGTATCAATGGTGACAATCAGCCTTAAGCCATTAATCAGTGCAATT-ATTgttcaacattggtttgacagaaataaaatgtgtaagggaactatctaggtatatactatatgaccaattactctctccaactcta
gi|12 : TGACTTGATT-TTGATTTTC--TCC------TATATGGAGATCATATACATACAATAA---AATAAC---AATTTACAATATAATAAGAGAT-A-AA--AATATTGAAA---AA-----AA------TATCACAAAAC---------AAACTAAATATCA-GTTCTAC----ACAATTT-AATGTTACACCT---GTTA-TTAGC-AAATAAAGATCATGT-T--AAA-AA--T------TACGTCATTAAAC-----ATG-T--AAAT----TGTTAATA-A------TTTT-----ATAT--ATGTATATA---CAGATAATG---ATATCCAATCA---C-----ACAATATTGTCAAAACGAAATACAAAATATCAGTTCA--GGA---AATCAG--CGACATGGA-------A------GTAT--TCATAAA-------A---TAT---------ATTAATCTGTTTTTAAAGCATTTCAAATTTACTCTCTTTT-AA---GACCAAATTCAGTAAAGTA--CTC-A-AACAACCA----------ATACG---AGATAATTTTG-A-TATGT--TATTTTTAATGATAACTGGTCTTAA
gi|13 : tTTAT-C-T-AAAA-TA---AAACCGCACGTAATTAAAC-----ATG-T--TAAA----TATCAGTT-G------TTTG-----ATACACATG-----AATAT-----ATGTACATA--TTAACATATATTTGTCCAAGCTTGTTAAAGCACAGTAAAATATATTGG--AATAGCT---TATCAG----AAACG--ATATGTAA------GTATATTTATAAACTATATTA--ATATGTTAATGAAACTTAGCTACACT----GCGCTGCGTATTTACTTT-ATT---A---AAC----TTAG-TGCGCTA--CATTGTAACAACCTACATGTGTATTTACA---CGACAATTA-----------GTAT--TTAATTACAATTGATATCAAGCCATTTATCAGTGAAATA-ATTGGAATCTTAGGATTA
gi|14 : ttTAATTTTATTCTTTATTTTC--TCA------TTTGTGGAGAGCAAATACGTAAACTAA---AACATC---AAATTACAATATAAATAGAGCA-A-AA--AATA---ATAATGCA-----TA------AAGTACAGAACAAGTAAAAAAAAACGAATATCA-ATTTTAC----ACAATCT-AATGCAATATAT---A-----GGGCAAAATAAATTTCATGC------------TAAATTATACTCCATTAAAC-----ATA-T--TAAATGTTTGT------AAT----TTTATACATATG---ATG-----G---C-----ATG---ATACCTGAACA---A-----ACACTAGTTTTGAATCGTAGTTCAATAAGTTAGA-AA--GAA---AATCAGTTCTATACAC
gi|15 : TGATTGTATTCTTTATTTCA--TCC------TATATGAAGAGCACATACATACATTAG---AATAAC---AAATAACAAAATAAATAAGAAA-A-TA--AATA---ATA---CA-----TATGCATGTAATTTGAGGC---------AAACTGAATAACA-ATTGTAT----ACGATAT-AATGCAATATAT---GTTA-TGAGCAAAATAAATATTATGC-T--AAA-AA--TAAA--ATTCTTCATTAAAC-----AAA-T--TAAA----TGT------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAATA---A-----Cca
gi|16 : tGGTTTGATTCTTTATTTCC--ACC------TATGTGGAAAGTACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--CATA---ATG---CA-----TA------TAACAGAAAGC---------AAAAT----------TTATA-----ACAATAT-AATGTAATAAAT---GATA-TGAGCAAAATAAATGTTATGCTT-AAAA-AG--TAAGTTATACTTCATTAAAC-----ATA-T--TAAA----TGG------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---t
gi|17 : TGATCTGATTCTTCATTTCC--TCC------TATATTGGGAATATATACACTCAATGA---AATAAC---ACATAACAATATAAATAGAGAA-A-AAT-ACTA---GTG---CA-----TA------TATCACAAAAA---------CAAATGAATATCA-AGTTTAC----ACAATTTAAACGCAGTACTT---GGTA-TTAACAATTTGAGGGTTATGC-T-ATAA-AT--TGAATTGTACTTCATTAAACTTTTTATA-T--TAAA----TGT------
gi|18 : tTGATTTGGTTCATCATTTCC--TTC------TATGCTGAGAGCACATACATACAATAA---AATAAC---AAATCACAATATAAATAGAGAA-ATGAATAATA---ATG---CA-----TA------TATCACAAGGCGGCA-----AAAAGGAATATCA-ATTTTAC----ACAAT-T--ATGCAGTATTT---GCTA-TTAGCAAACCAAATGTAATGC-T-TAAA-AT--CAAATTATATTTCATT
gi|19 : ttTGATTTGATTCTTTATTTCCC-TCC------TATGCGGAGAGCACATACATACAATAA---AATAAC---AAATAACAATATAAATAGAGAC-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-A--TTAC-----CATTAT-------GTATTT---GATATTGAA-AAAATAAGTTTTATG
gi|2 : gtttCC------TATGTGGAGAGCACATACATATAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATTAACAACA-ATTTTAC----AGAATAT-AATGTAATATAT---GTTA-TGTGCAAAATAAATGTTATAA-T-AAAAGAA--TAAATTATACTTCATTAAAC-----ATA-T--AAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG----TAACCAAACA---C-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGAAATAATCAATTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTA-----------------TACACT----GCACTTCGCATTTAATCT-GTCT-TA---GACCAAATTAGGCGTAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTGTCATTGGTGACAATAGGCCTTAAGC-----------------------CATCTTAGGAGAGAGA--GCTGCAAATGCATTGAA-TGGCACAGGACCGA--TTATCGTATACATTGATTTCCAGAGATTTTCTATAACAATTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGAGAACGTGTCGCTGAAGA-GA------CGGCATATGCTATTTATAGTAGTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTAATATGTGCCAGAGTTCACAAACATTtacaacgtttaacatttgtaatgttc
gi|20 : TGAAATT-ATCGGCATCTTAGGCGTGAGG--TCTACAAATGTGTTAAA-T----CAGGAATAA--TCATGGTGTAAATTGATTCCAAGATATGTTCTCTTGCAGTGTCTTTTTCACTTCACTCTA-----------------CATACAAATACGATCTCTGTTA-ATTAAGGACACCGTTTTGTAAGCGTGTCGCTAAAGA-GA------CGGCgtacaacattggtttgacagaaataaattctgtaagggtactgtctaggtatattctatttgaccaattactctcttcagctcagttgatattggtgtta
gi|21 : TGATTTGATTCGTAATTTCT--TCCCTCTTGTATATGGAGAGCATATACATACAATAATACAATAATACAAAATTAAAATAAAAAT-GAGAACA-TAT-ATTG---ATA---TACGATCTA------TACCACAAAAC---------AAA
gi|22 : ttGATTCTTTATTTCC--TCC------TGCACGGAGAG--CATACATACAATAA---A--AAC---AATTTACAATGTTACTAGAG---A-GA--AACA---CTG---CT-----CA------TAAT------C---------GAAATAACTATCA-ATTCTAC----ACAACTT-GATGc
gi|23 : aactaATAAC---AAATTACTATATAAATAGAGAA-A-AAT-AATA---ATA---CA-----TA------TATCACAAGAC---------AAAAT
gi|3 : GCCATTAAACAGTGAAATT-ATTTGCTTCTTATGATTAAGA--GCTACAAATGCGTTGAAATGGCACAGAATCGA--TTATCGTATAAATTGATTTCTAGAGATTTTATAGAACAGTTTTAGGTTCGTAATATTCTAAAATAAGATG-TATAGTTATACAAAGAACACTTCTGTTACATTTTTAACACATGTTTGTGAACGTGTCACTGAAGA-GA------CAACATATGATATTTATAGTACTTTGACATTCAGT-GTATATC-TTGGGTACAGTTTTGATAGATGCCAGAGTTTACCAAAATTt
gi|4 : cTGATTTGATTCTTTATTTCC--TCC------TATGTGGAGTGCACATACATACAACAG---AATGAC---AAATTACAATTTAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATTAATAACA-ATTTTACGGTTACAATAT-AATGTACTATAT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTCCATTTAAC-----ATA-T--TAAA----TGG------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTTGAAACGAAATACAAGATATTAG--AA--GGA---AATTAGTTGTACAAGAAAACTGTCA------GTAT--TGATAAA-------A--GTAT---------ACTAAGCTACACT----GCACTTCGCATTTAATAT-GTTT-AA---GACCAAATCAGGTGCAGAG--CGC-A-AACAACCT----------TTACA---AGACGATTATG-A-TTTCT----TCATTGGTGACAATAGGTCTTAAGCCAATAATCAGTGCAATT-ATTTATATTTTAGGAGTAAGA--GCTACAAATGCGTTGAA-TGGTACAGGACCGA--TTATCGTATAAATTGTTTTCCAGAGATTTTTTTTAACAATTTCAGATTCGTAACATTCTCAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAATATGAATATGTCAGCATATGATATGTATAGTACTTTGTCATTCAGCGGTATATC-TAGGGTAATGTTATGATAGATGCCAGAGTTCACAAACATTgaacaacattggtttgacagacataaaatatgtaagggtactatctaggtatattctatttaacaacttactatttttaactctgttatataaaagtttttttttccatttaaattcccaaaacagcaaagccactcagaatcgaagatagagaatacttattaaaatacgcataatatccggtatgaaaccgagttgatttgatggatgagtttgatattggaaaagcctgtaaataaaaatatgtgttactctttggttacagtttgaccgacacaattaaccaaaaaatgacatttttctttcatcaattaaaatttctaaagtctgtgactcaaatttatcttaaacacacgccagttctgttatacactggtacatattgcattattttaacaaaaaaaaacacacaattgtttggatttttctagtgttaacatttgctgtttggttt
gi|5 : TA-TGAGCAAAA-AAATGTCAGGC-T-AGAA-AT--TAAAGTATATTTCATTAAAC-----ATAGTAATAAAGTTTTGT------AATTTTGTTCAT----ATG---ATT-----T---C-----ATG---ATACCCAATCA---A-----CTAATCCTGCCGAAACAAAATACAAGATATAAG--AA--GGA---ACTCAATTCTACACACAC--TGT--------GTAT--TAATTTG-------TTTGTAA---------ACTTTGCAACAGT----ACACTGCACATTT-CTGT-GTTTTAA---GACTAAATTAGGTGCAGTG--CGC-G-AACACCCG----------TTACA---AGACAATCGTG-A-TTTT--GTATCATTGA----------CCATAAGCC-TTAATCGGTGCAAAT-ATTTGCATCTTTGGTTTGAGA--ACTACAAATGCGTTGAA-TGGTACATGACCAC--TTATTGTTTGAATCTATTTTAAGATATTTTTCCCAACATATTCTGATTCGCTACATTCTAAAAT-----G-TAAAGTTATATAAACAACAACTCTGTTGCACTTAAGACAAGCCTTTGTGAACGCATCGCTTAAGA-GA------CGGCATATTCTATATACAGTACGTTGACATTCACTGGTATATC-TAGGGTAT
gi|6 : ttaGATTTGATGCTTTATTTCC--TCC------TATGTGGAGAGCACATACAAAAAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAAAAAAAGGC---------AAAATGAATAACACATTTTAC----ACAATAT-AATGCAATAATT---GTTA-TGAACAAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACCTCATTAAAC-----ATT-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCAGTACCCGTAT--TTATAAA-------A--GCAT---------ACTTCGTTACACT----GCACTTCACATTTAATCT-GTTC-AA---GATCAAATCAGGTGCAGAG--CGC-G-AACTACCT----------TTACA---AGACAATTACG-ATTTTTT-GTATCATTGGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATTTTGGGATTAAAGCTGCTACAAATGCGTTGAA-TGGCACAGGACAGT--TAATCATAT---TTGATTTCCAAAGACTTTCTCTTATAGTTCCGGATTTGTTACAttcgcaaacattgctgaacattgattttacttgaacagaattggtaagagtactctgtgtttattctatttgactaataactttcttcaactctgttagtattgataattatcagttccttccatttaaattaagatagcaaaatgcgctaaacattcagatata
gi|7 : CAAACA---A-----TAAATTCTG-CGAAATGA----C--GCTATTGG--AG--AGA---AATTA----TAAA---AAAA----A------ACAT--TGATATA-------C--ATTT----------CTTAGCCACATT----CTATTTCGCATATACTCT-G--G-AAGC-GATCATGTTCAGTGCAGAGGACTT-G-AAAAAA-------------TATATTGAGATAATTACG-A-TTTCT-ACTTCATCAGT--CAAT----CTTAAGCCATTAATCA-TTTAATTAATTTGATTCTCAGAAGTGAGG--CCAACACGTCCG-TGAA-T-----AAATCCGAGTTTGTGGTATAAATATATTTCAGGAGAGGTTCTC--AC---------TTAATAA-GCTCTAGAATGAAATGAAAAAAATATATAAATAA----------ATAGTTT--ACGACTCTT----------------AAAG-GA------TGGCGTATAAAAAATACAGTATTT------------GTATTTCTTAAGGTATACTTTT-ATAGCTGCTTGATTTCACATACATT
gi|8 : tataATAG---AATAAC---AAATAACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TAATTA--TAATACAAGGT---------AAAATGAATAACACATTTTAA----ACATTAT-AATGCAATAAAT---GTTA-TGAGCGAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGCCA------GTAT--TTTTAAA-------A--ACAT---------ACTTAGCT-----------ACTTCACATTTAATCT-GTTT-AA---GATCAAAGTAGGTCCAGTG--CAT-G-AACAACCT----------TTACA---AGACAATTATG-ATTTTTT-GTATCATTGGTGACAGTAGGCCTTAAGTCGTTAATCAGTGCAATT-ATTTGTGTCTTGGGATTAAGA--GCTACAAATGTGTTGAA-TGGCACAGGACAGT--TTATCATATATTTTGATTTCCAGAGACTTTCTTTAACAGTTCCAAATTTGTAACAatataacatgtgtttaaatgaaacgaaatcagcaagagtctgtataaattcatttattcggtttgaacaaatgactctcttctactctgttaacctttatgtttatatatctttcccattt
gi|9 : TTGATTATTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------ACAATTAATAACA-ATTTTAC----ACAATAT-AATGTAATATATTATGTTA-TGAGCAATATAAATGTTATGC-T-AAAA-AAA-TTAATTATACTTCATTAAAC-----ATA-T--AAAA----TGA------T------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATATTGTTGAAACGAAATAAAAGATATTAG--AA--GGA---AATCAGTTCTAGACGCAAAATGTCA------GTAT--TGATAAA-------A--TTAT---------ACTTAGCTACACT----GCACTTCCCATTTAC-CG-G--T-AATCTGATCAAATTAGGTGCAGAG--CGC-A-AACAATAT----------TTACA---AGACAATTATG-ATTTTTT-GTATCATTTGTGACAATCGGTCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGAGTAAGA--GCTACAAATGCGTTGAA-GGACACAGGGCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATTTCTTAAGGTATACTTTTATAGCTGCTTGATTTCACATACATTATATAACATGTGTTTAAATGAAACGAAATCAGCAAGAGTCTGTATAAATTCATTTATTCGGTTTGAACAAATGACTCTCTTCTACTCTGTTAACCTTTATGTTTATATATCTTTCCCATTTTACTTTTATTTTATTTTATCGAAAGCAACGAAGTCAATCTATGTTGAATGTAGAAACTAGTACACATCATGTGGACAGGCGTATATATCGGGTGAAGAGCGAATTGATTCTTTAGTGAGCTATGTGCTTTCAAAGATTTTATCATATATCACTGGTATCGCATAAGTTTGTGAATAGAAATATATGGTCGCAGGTTGACCGATACAAGCGACAAGTATTCACTAATTTAATAACATTTTGATATTTTGTGAATCAGTTAAAATCAAACCGATTCTAGTATACATTTCGTCATATTGGATTATTTTAACAACACAAAA
Alignments
lowQualScore : 11 111111 111111111 1111 2222222222222 11111 111111 11111111111 111111111 111 1111111111 1 111111
lowQualScore : 66 777777 444 444 2 2 00 444 444 55555 111111 0 444444444 3 1 5 5555 1 2 1 555 1 2 2 33 2 66 77777 2 33 2222 9999999999999 88888 888 77777 555 77777 555 2 999999999 77 44 555 1 0 1 000000 55 0 55555555555 444444444 7777 1 777777 111 1 55 333 5555555555 666 3 0 44 5 3 1 55 4 66 0 0 22 1 2 3 5 1 1 7 3 5 666666 1 1 77 6 3
lowQualScore : .. ...... ... ... . . .. ... ... ..... ...... . ......... . . . .... . . . ... . . . .. . .. ..... . .. .... ............. ..... ... ..... ... ..... ... . ......... .. .. ... . . . ...... .. . ........... ......... .... . ...... ... . .. ... .......... ... . . .. . . . .. . .. . . .. . . . . . . . . . ...... . . .. . .
lowQualScore : 88 777777 444 111 4 4 33 111 111 99999 888888 3 444444444 8 3 3 7777 1 7 0 000 0 7 7 55 7 33 11111 9 99 1111 7777777777777 55555 555 77777 444 77777 444 3 222222222 99 66 888 2 4 4 555555 00 5 88888888888 555555555 7777 4 777777 444 0 00 999 9999999999 444 6 9 22 8 3 9 55 0 11 1 8 99 1 3 6 7 9 9 9 0 7 444444 0 7 33 7 2
consensus : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
Reference ( family-1722 ) : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
gi|1 : ATTTCTTATTTCGAATTG------TAT-T--AGAGCACATACATACAATAA---AATATC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---TA-----TA------TAGCACATGGC---------AAAATTAACAACA-ATTTTAC----ACAATAT-AATTCAGTATTT---GTTA-TGAGCAAAATAAAAGTTATGC-T-AAAG-AAATTGAATTATACTTCATTAAAC-----ATA-T--TAAA----TGTTTTTAAA------TTTATACATATG---ATG-----A---C-----ATG---ATACCCGAACA---A-----CCAATCTGGTCGAAACGAAATACAAGACATGAG--AA--GGA---AATCAGTTCTACACACAAAATGTCA------GTAT--TGTTACA-------A--TTAT---------ACTCAGCTACACT----GCACGTCGCATTTACTCT-GTTT-AA---GACCAAACTAGGTGCAGTG--CGC-T-AACAACCT----------TTACA---AGACAATTATGTA-TTTTT-GTATCATTAGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATATTAGGATTAATA--ACTATAAATGCGTCGAA-TGGCACAAGACTGA--TTATCGTATAAATTGA-ATCCAGAGATTTTCTCTAACAA-TTCAGATTCGTAACATTTTAGAATAAGATG-TATAGATATACAAGTAA-ACATCTGTTACAGTTTGGACAAATCTTTGTTAACGTGACGCTGAAGA-GA------CGGCATATGATATTTATTATACTTCGACATTCAGTAGTATATC-TAGGGTATAGTTTTGATAGATGTCAGAGTTCACAAACATT
gi|11 : aTGATTTAATTTTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAAAAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAAAC-----------AATTAATAAAA-ATTTTAC----ACAATAT-AATGTAATGTAT---GTTA-TGAGCAAAATAAATGTTATGC-TAAAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTAAACA---C-----CCAATCTTGTCGAAACGAA----AAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTATACT----GCACTTCGCATTTAATCT--------------CAAATAAGGTGCAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-G-TTTTTGGTATCAATGGTGACAATCAGCCTTAAGCCATTAATCAGTGCAATT-ATTgttcaacattggtttgacagaaataaaatgtgtaagggaactatctaggtatatactatatgaccaattactctctccaactcta
gi|12 : TGACTTGATT-TTGATTTTC--TCC------TATATGGAGATCATATACATACAATAA---AATAAC---AATTTACAATATAATAAGAGAT-A-AA--AATATTGAAA---AA-----AA------TATCACAAAAC---------AAACTAAATATCA-GTTCTAC----ACAATTT-AATGTTACACCT---GTTA-TTAGC-AAATAAAGATCATGT-T--AAA-AA--T------TACGTCATTAAAC-----ATG-T--AAAT----TGTTAATA-A------TTTT-----ATAT--ATGTATATA---CAGATAATG---ATATCCAATCA---C-----ACAATATTGTCAAAACGAAATACAAAATATCAGTTCA--GGA---AATCAG--CGACATGGA-------A------GTAT--TCATAAA-------A---TAT---------ATTAATCTGTTTTTAAAGCATTTCAAATTTACTCTCTTTT-AA---GACCAAATTCAGTAAAGTA--CTC-A-AACAACCA----------ATACG---AGATAATTTTG-A-TATGT--TATTTTTAATGATAACTGGTCTTAA
gi|13 : tTTAT-C-T-AAAA-TA---AAACCGCACGTAATTAAAC-----ATG-T--TAAA----TATCAGTT-G------TTTG-----ATACACATG-----AATAT-----ATGTACATA--TTAACATATATTTGTCCAAGCTTGTTAAAGCACAGTAAAATATATTGG--AATAGCT---TATCAG----AAACG--ATATGTAA------GTATATTTATAAACTATATTA--ATATGTTAATGAAACTTAGCTACACT----GCGCTGCGTATTTACTTT-ATT---A---AAC----TTAG-TGCGCTA--CATTGTAACAACCTACATGTGTATTTACA---CGACAATTA-----------GTAT--TTAATTACAATTGATATCAAGCCATTTATCAGTGAAATA-ATTGGAATCTTAGGATTA
gi|14 : ttTAATTTTATTCTTTATTTTC--TCA------TTTGTGGAGAGCAAATACGTAAACTAA---AACATC---AAATTACAATATAAATAGAGCA-A-AA--AATA---ATAATGCA-----TA------AAGTACAGAACAAGTAAAAAAAAACGAATATCA-ATTTTAC----ACAATCT-AATGCAATATAT---A-----GGGCAAAATAAATTTCATGC------------TAAATTATACTCCATTAAAC-----ATA-T--TAAATGTTTGT------AAT----TTTATACATATG---ATG-----G---C-----ATG---ATACCTGAACA---A-----ACACTAGTTTTGAATCGTAGTTCAATAAGTTAGA-AA--GAA---AATCAGTTCTATACAC
gi|15 : TGATTGTATTCTTTATTTCA--TCC------TATATGAAGAGCACATACATACATTAG---AATAAC---AAATAACAAAATAAATAAGAAA-A-TA--AATA---ATA---CA-----TATGCATGTAATTTGAGGC---------AAACTGAATAACA-ATTGTAT----ACGATAT-AATGCAATATAT---GTTA-TGAGCAAAATAAATATTATGC-T--AAA-AA--TAAA--ATTCTTCATTAAAC-----AAA-T--TAAA----TGT------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAATA---A-----Cca
gi|16 : tGGTTTGATTCTTTATTTCC--ACC------TATGTGGAAAGTACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--CATA---ATG---CA-----TA------TAACAGAAAGC---------AAAAT----------TTATA-----ACAATAT-AATGTAATAAAT---GATA-TGAGCAAAATAAATGTTATGCTT-AAAA-AG--TAAGTTATACTTCATTAAAC-----ATA-T--TAAA----TGG------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---t
gi|17 : TGATCTGATTCTTCATTTCC--TCC------TATATTGGGAATATATACACTCAATGA---AATAAC---ACATAACAATATAAATAGAGAA-A-AAT-ACTA---GTG---CA-----TA------TATCACAAAAA---------CAAATGAATATCA-AGTTTAC----ACAATTTAAACGCAGTACTT---GGTA-TTAACAATTTGAGGGTTATGC-T-ATAA-AT--TGAATTGTACTTCATTAAACTTTTTATA-T--TAAA----TGT------
gi|18 : tTGATTTGGTTCATCATTTCC--TTC------TATGCTGAGAGCACATACATACAATAA---AATAAC---AAATCACAATATAAATAGAGAA-ATGAATAATA---ATG---CA-----TA------TATCACAAGGCGGCA-----AAAAGGAATATCA-ATTTTAC----ACAAT-T--ATGCAGTATTT---GCTA-TTAGCAAACCAAATGTAATGC-T-TAAA-AT--CAAATTATATTTCATT
gi|19 : ttTGATTTGATTCTTTATTTCCC-TCC------TATGCGGAGAGCACATACATACAATAA---AATAAC---AAATAACAATATAAATAGAGAC-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-A--TTAC-----CATTAT-------GTATTT---GATATTGAA-AAAATAAGTTTTATG
gi|2 : gtttCC------TATGTGGAGAGCACATACATATAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATTAACAACA-ATTTTAC----AGAATAT-AATGTAATATAT---GTTA-TGTGCAAAATAAATGTTATAA-T-AAAAGAA--TAAATTATACTTCATTAAAC-----ATA-T--AAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG----TAACCAAACA---C-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGAAATAATCAATTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTA-----------------TACACT----GCACTTCGCATTTAATCT-GTCT-TA---GACCAAATTAGGCGTAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTGTCATTGGTGACAATAGGCCTTAAGC-----------------------CATCTTAGGAGAGAGA--GCTGCAAATGCATTGAA-TGGCACAGGACCGA--TTATCGTATACATTGATTTCCAGAGATTTTCTATAACAATTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGAGAACGTGTCGCTGAAGA-GA------CGGCATATGCTATTTATAGTAGTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTAATATGTGCCAGAGTTCACAAACATTtacaacgtttaacatttgtaatgttc
gi|20 : TGAAATT-ATCGGCATCTTAGGCGTGAGG--TCTACAAATGTGTTAAA-T----CAGGAATAA--TCATGGTGTAAATTGATTCCAAGATATGTTCTCTTGCAGTGTCTTTTTCACTTCACTCTA-----------------CATACAAATACGATCTCTGTTA-ATTAAGGACACCGTTTTGTAAGCGTGTCGCTAAAGA-GA------CGGCgtacaacattggtttgacagaaataaattctgtaagggtactgtctaggtatattctatttgaccaattactctcttcagctcagttgatattggtgtta
gi|21 : TGATTTGATTCGTAATTTCT--TCCCTCTTGTATATGGAGAGCATATACATACAATAATACAATAATACAAAATTAAAATAAAAAT-GAGAACA-TAT-ATTG---ATA---TACGATCTA------TACCACAAAAC---------AAA
gi|22 : ttGATTCTTTATTTCC--TCC------TGCACGGAGAG--CATACATACAATAA---A--AAC---AATTTACAATGTTACTAGAG---A-GA--AACA---CTG---CT-----CA------TAAT------C---------GAAATAACTATCA-ATTCTAC----ACAACTT-GATGc
gi|23 : aactaATAAC---AAATTACTATATAAATAGAGAA-A-AAT-AATA---ATA---CA-----TA------TATCACAAGAC---------AAAAT
gi|3 : GCCATTAAACAGTGAAATT-ATTTGCTTCTTATGATTAAGA--GCTACAAATGCGTTGAAATGGCACAGAATCGA--TTATCGTATAAATTGATTTCTAGAGATTTTATAGAACAGTTTTAGGTTCGTAATATTCTAAAATAAGATG-TATAGTTATACAAAGAACACTTCTGTTACATTTTTAACACATGTTTGTGAACGTGTCACTGAAGA-GA------CAACATATGATATTTATAGTACTTTGACATTCAGT-GTATATC-TTGGGTACAGTTTTGATAGATGCCAGAGTTTACCAAAATTt
gi|4 : cTGATTTGATTCTTTATTTCC--TCC------TATGTGGAGTGCACATACATACAACAG---AATGAC---AAATTACAATTTAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATTAATAACA-ATTTTACGGTTACAATAT-AATGTACTATAT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTCCATTTAAC-----ATA-T--TAAA----TGG------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTTGAAACGAAATACAAGATATTAG--AA--GGA---AATTAGTTGTACAAGAAAACTGTCA------GTAT--TGATAAA-------A--GTAT---------ACTAAGCTACACT----GCACTTCGCATTTAATAT-GTTT-AA---GACCAAATCAGGTGCAGAG--CGC-A-AACAACCT----------TTACA---AGACGATTATG-A-TTTCT----TCATTGGTGACAATAGGTCTTAAGCCAATAATCAGTGCAATT-ATTTATATTTTAGGAGTAAGA--GCTACAAATGCGTTGAA-TGGTACAGGACCGA--TTATCGTATAAATTGTTTTCCAGAGATTTTTTTTAACAATTTCAGATTCGTAACATTCTCAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAATATGAATATGTCAGCATATGATATGTATAGTACTTTGTCATTCAGCGGTATATC-TAGGGTAATGTTATGATAGATGCCAGAGTTCACAAACATTgaacaacattggtttgacagacataaaatatgtaagggtactatctaggtatattctatttaacaacttactatttttaactctgttatataaaagtttttttttccatttaaattcccaaaacagcaaagccactcagaatcgaagatagagaatacttattaaaatacgcataatatccggtatgaaaccgagttgatttgatggatgagtttgatattggaaaagcctgtaaataaaaatatgtgttactctttggttacagtttgaccgacacaattaaccaaaaaatgacatttttctttcatcaattaaaatttctaaagtctgtgactcaaatttatcttaaacacacgccagttctgttatacactggtacatattgcattattttaacaaaaaaaaacacacaattgtttggatttttctagtgttaacatttgctgtttggttt
gi|5 : TA-TGAGCAAAA-AAATGTCAGGC-T-AGAA-AT--TAAAGTATATTTCATTAAAC-----ATAGTAATAAAGTTTTGT------AATTTTGTTCAT----ATG---ATT-----T---C-----ATG---ATACCCAATCA---A-----CTAATCCTGCCGAAACAAAATACAAGATATAAG--AA--GGA---ACTCAATTCTACACACAC--TGT--------GTAT--TAATTTG-------TTTGTAA---------ACTTTGCAACAGT----ACACTGCACATTT-CTGT-GTTTTAA---GACTAAATTAGGTGCAGTG--CGC-G-AACACCCG----------TTACA---AGACAATCGTG-A-TTTT--GTATCATTGA----------CCATAAGCC-TTAATCGGTGCAAAT-ATTTGCATCTTTGGTTTGAGA--ACTACAAATGCGTTGAA-TGGTACATGACCAC--TTATTGTTTGAATCTATTTTAAGATATTTTTCCCAACATATTCTGATTCGCTACATTCTAAAAT-----G-TAAAGTTATATAAACAACAACTCTGTTGCACTTAAGACAAGCCTTTGTGAACGCATCGCTTAAGA-GA------CGGCATATTCTATATACAGTACGTTGACATTCACTGGTATATC-TAGGGTAT
gi|6 : ttaGATTTGATGCTTTATTTCC--TCC------TATGTGGAGAGCACATACAAAAAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAAAAAAAGGC---------AAAATGAATAACACATTTTAC----ACAATAT-AATGCAATAATT---GTTA-TGAACAAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACCTCATTAAAC-----ATT-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCAGTACCCGTAT--TTATAAA-------A--GCAT---------ACTTCGTTACACT----GCACTTCACATTTAATCT-GTTC-AA---GATCAAATCAGGTGCAGAG--CGC-G-AACTACCT----------TTACA---AGACAATTACG-ATTTTTT-GTATCATTGGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATTTTGGGATTAAAGCTGCTACAAATGCGTTGAA-TGGCACAGGACAGT--TAATCATAT---TTGATTTCCAAAGACTTTCTCTTATAGTTCCGGATTTGTTACAttcgcaaacattgctgaacattgattttacttgaacagaattggtaagagtactctgtgtttattctatttgactaataactttcttcaactctgttagtattgataattatcagttccttccatttaaattaagatagcaaaatgcgctaaacattcagatata
gi|7 : CAAACA---A-----TAAATTCTG-CGAAATGA----C--GCTATTGG--AG--AGA---AATTA----TAAA---AAAA----A------ACAT--TGATATA-------C--ATTT----------CTTAGCCACATT----CTATTTCGCATATACTCT-G--G-AAGC-GATCATGTTCAGTGCAGAGGACTT-G-AAAAAA-------------TATATTGAGATAATTACG-A-TTTCT-ACTTCATCAGT--CAAT----CTTAAGCCATTAATCA-TTTAATTAATTTGATTCTCAGAAGTGAGG--CCAACACGTCCG-TGAA-T-----AAATCCGAGTTTGTGGTATAAATATATTTCAGGAGAGGTTCTC--AC---------TTAATAA-GCTCTAGAATGAAATGAAAAAAATATATAAATAA----------ATAGTTT--ACGACTCTT----------------AAAG-GA------TGGCGTATAAAAAATACAGTATTT------------GTATTTCTTAAGGTATACTTTT-ATAGCTGCTTGATTTCACATACATT
gi|8 : tataATAG---AATAAC---AAATAACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TAATTA--TAATACAAGGT---------AAAATGAATAACACATTTTAA----ACATTAT-AATGCAATAAAT---GTTA-TGAGCGAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGCCA------GTAT--TTTTAAA-------A--ACAT---------ACTTAGCT-----------ACTTCACATTTAATCT-GTTT-AA---GATCAAAGTAGGTCCAGTG--CAT-G-AACAACCT----------TTACA---AGACAATTATG-ATTTTTT-GTATCATTGGTGACAGTAGGCCTTAAGTCGTTAATCAGTGCAATT-ATTTGTGTCTTGGGATTAAGA--GCTACAAATGTGTTGAA-TGGCACAGGACAGT--TTATCATATATTTTGATTTCCAGAGACTTTCTTTAACAGTTCCAAATTTGTAACAatataacatgtgtttaaatgaaacgaaatcagcaagagtctgtataaattcatttattcggtttgaacaaatgactctcttctactctgttaacctttatgtttatatatctttcccattt
gi|9 : TTGATTATTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------ACAATTAATAACA-ATTTTAC----ACAATAT-AATGTAATATATTATGTTA-TGAGCAATATAAATGTTATGC-T-AAAA-AAA-TTAATTATACTTCATTAAAC-----ATA-T--AAAA----TGA------T------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATATTGTTGAAACGAAATAAAAGATATTAG--AA--GGA---AATCAGTTCTAGACGCAAAATGTCA------GTAT--TGATAAA-------A--TTAT---------ACTTAGCTACACT----GCACTTCCCATTTAC-CG-G--T-AATCTGATCAAATTAGGTGCAGAG--CGC-A-AACAATAT----------TTACA---AGACAATTATG-ATTTTTT-GTATCATTTGTGACAATCGGTCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGAGTAAGA--GCTACAAATGCGTTGAA-GGACACAGGGCC
blockSeqs : C CTCTTG TAC ACA C T AT TTG ATG CGATC TGCATG AAGTAAAAA T A C GGTT A A A TAT T T T AA G A TTTTT G AA TGTT AATTTTG TACAT CAC TATAT ATA AGATA TAC A TATATTTGT TT TA AAT T C GTACCC AT CTATATTAA GTTAATGAA TAAA A CTTTT TCT A GA TGT ACATGTGTAT TTG . T GG C A T CT A GT AT A A A A T T C G T ATATGT T T CG T A
blockSeqs : . . . . . . T . . . ATTA GGCA A T C . T . C . T . . A . . . . . GTTT TAATAA T T . . . . T C A . . T A . . TTTG . . C GTTTT GC T . G . . . T G T . G . . . GT T A A . T T G G . . T T CG . G
blockSeqs : . . . . . . T . . . . . G T . . C . A . T . . A . . . . . . CAGTTG . . . . . . C C . . . T C . . AG . . C GTCT . T . A . . . T G T . G . . . GT A A A . T T C T . . G T TG . G
blockSeqs : . . . . . . T . . . . . G A . . A . A . A . . A . . . . . . AAT . . . . . . A A . . . T C . . AG . . A GTTT . A . G . . . . G A . T . . . AT A A G . A T C G . . A T T . .
blockSeqs : . . . . . . . . . . . . G T . . A . A . G . . T . . . . . . A . . . . . . A A . . . T C . . AG . . A GTTC . A . A . . . . G A . G . . . TA T G . . A A C A . . A . . .
blockSeqs : . . . . . . . . . . . . G T . . T . T . C . . A . . . . . . A . . . . . . A C . . . T C . . AG . . C GTTT . T . G . . . . A A . T . . . GT G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . G A . . A . T . A . . A . . . . . . A . . . . . . A A . . . T C . . CA . . A ATT . A . G . . . . G A . T . . . GT A
blockSeqs : . . . . . . . . . . . . T A . . A . T . T . . A . . . . . . A . . . . . . C A . . . T . . . AA . . C GG . A . G . . . . G C . G . . . . .
blockSeqs : . . . . . . . . . . . . A T . . T . A . T . . A . . . . . . A . . . . . . A A . . . . . . . AT . . A GT . T . G . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . T A . . A . A . T . . A . . . . . . A . . . . . . A A . . . . . . . A . . C . . A . A . . . . . . . G
blockSeqs : . . . . . . . . . . . . G A . . A . T . T . . A . . . . . . A . . . . . . A A . . . . .
blockSeqs : . . . . . . . . . . . . G A . . A . A . T . . . . . . . . . T . . . . . . . A
blockSeqs : . . . . . . . . . . . . T A . . A . A . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : ** ** A************ ***** GT
originalCons : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
finalCons : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGTA------------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATTTCTTAAGGTATACTTTTATAGCTGCTTGATTTCACATACATTATATAACATGTGTTTAAATGAAACGAAATCAGCAAGAGTCTGTATAAATTCATTTATTCGGTTTGAACAAATGACTCTCTTCTACTCTGTTAACCTTTATGTTTATATATCTTTCCCATTTTACTTTTATTTTATTTTATCGAAAGCAACGAAGTCAATCTATGTTGAATGTAGAAACTAGTACACATCATGTGGACAGGCGTATATATCGGGTGAAGAGCGAATTGATTCTTTAGTGAGCTATGTGCTTTCAAAGATTTTATCATATATCACTGGTATCGCATAAGTTTGTGAATAGAAATATATGGTCGCAGGTTGACCGATACAAGCGACAAGTATTCACTAATTTAATAACATTTTGATATTTTGTGAATCAGTTAAAATCAAACCGATTCTAGTATACATTTCGTCATATTGGATTATTTTAACAACACAAAA
Alignments
lowQualScore : 11 111111 111111111 1111 2222222222222 11111 111111 11111111111 111111111 111 1111111111 1 111111
lowQualScore : 66 777777 444 444 2 2 00 444 444 55555 111111 0 444444444 3 1 5 5555 1 2 1 555 1 2 2 33 2 66 77777 2 33 2222 9999999999999 88888 888 77777 555 77777 555 2 999999999 77 44 555 1 0 1 000000 55 0 55555555555 444444444 7777 1 777777 111 1 55 333 5555555555 666 3 0 44 5 3 1 55 4 66 0 0 22 1 2 3 5 1 1 7 3 5 666666 1 1 77 6 3
lowQualScore : .. ...... ... ... . . .. ... ... ..... ...... . ......... . . . .... . . . ... . . . .. . .. ..... . .. .... ............. ..... ... ..... ... ..... ... . ......... .. .. ... . . . ...... .. . ........... ......... .... . ...... ... . .. ... .......... ... . . .. . . . .. . .. . . .. . . . . . . . . . ...... . . .. . .
lowQualScore : 88 777777 444 111 4 4 33 111 111 99999 888888 3 444444444 8 3 3 7777 1 7 0 000 0 7 7 55 7 33 11111 9 99 1111 7777777777777 55555 555 77777 444 77777 444 3 222222222 99 66 888 2 4 4 555555 00 5 88888888888 555555555 7777 4 777777 444 0 00 999 9999999999 444 6 9 22 8 3 9 55 0 11 1 8 99 1 3 6 7 9 9 9 0 7 444444 0 7 33 7 2
consensus : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
Reference ( family-1722 ) : TGATTTGATTCTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-ATTTTAC----ACAATAT-AATGCAATATNT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTACACT----GCACTTCGCATTTACTCT-GTTT-AA---GACCAAATTAGGTGCAGNG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTATCATTGGTGACAATNGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGATTAAGA--GCTACAAATGCGTTGAA-TGGCACAGGACCGA--TTATCGTATAAATTGATTTCCAGAGATTTTCTCTAACAGTTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAAGA-GA------CGGCATATGATATNTATAGTACTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTGATAGATGCCAGAGTTCACAAACATT
gi|1 : ATTTCTTATTTCGAATTG------TAT-T--AGAGCACATACATACAATAA---AATATC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---TA-----TA------TAGCACATGGC---------AAAATTAACAACA-ATTTTAC----ACAATAT-AATTCAGTATTT---GTTA-TGAGCAAAATAAAAGTTATGC-T-AAAG-AAATTGAATTATACTTCATTAAAC-----ATA-T--TAAA----TGTTTTTAAA------TTTATACATATG---ATG-----A---C-----ATG---ATACCCGAACA---A-----CCAATCTGGTCGAAACGAAATACAAGACATGAG--AA--GGA---AATCAGTTCTACACACAAAATGTCA------GTAT--TGTTACA-------A--TTAT---------ACTCAGCTACACT----GCACGTCGCATTTACTCT-GTTT-AA---GACCAAACTAGGTGCAGTG--CGC-T-AACAACCT----------TTACA---AGACAATTATGTA-TTTTT-GTATCATTAGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATATTAGGATTAATA--ACTATAAATGCGTCGAA-TGGCACAAGACTGA--TTATCGTATAAATTGA-ATCCAGAGATTTTCTCTAACAA-TTCAGATTCGTAACATTTTAGAATAAGATG-TATAGATATACAAGTAA-ACATCTGTTACAGTTTGGACAAATCTTTGTTAACGTGACGCTGAAGA-GA------CGGCATATGATATTTATTATACTTCGACATTCAGTAGTATATC-TAGGGTATAGTTTTGATAGATGTCAGAGTTCACAAACATT
gi|11 : aTGATTTAATTTTTTATTTCC--TCC------TATGTGGAGAGCACATACATACAAAAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAAAC-----------AATTAATAAAA-ATTTTAC----ACAATAT-AATGTAATGTAT---GTTA-TGAGCAAAATAAATGTTATGC-TAAAAA-AA--TAAATTATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTAAACA---C-----CCAATCTTGTCGAAACGAA----AAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTAT---------ACTTAGCTATACT----GCACTTCGCATTTAATCT--------------CAAATAAGGTGCAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-G-TTTTTGGTATCAATGGTGACAATCAGCCTTAAGCCATTAATCAGTGCAATT-ATTgttcaacattggtttgacagaaataaaatgtgtaagggaactatctaggtatatactatatgaccaattactctctccaactcta
gi|12 : TGACTTGATT-TTGATTTTC--TCC------TATATGGAGATCATATACATACAATAA---AATAAC---AATTTACAATATAATAAGAGAT-A-AA--AATATTGAAA---AA-----AA------TATCACAAAAC---------AAACTAAATATCA-GTTCTAC----ACAATTT-AATGTTACACCT---GTTA-TTAGC-AAATAAAGATCATGT-T--AAA-AA--T------TACGTCATTAAAC-----ATG-T--AAAT----TGTTAATA-A------TTTT-----ATAT--ATGTATATA---CAGATAATG---ATATCCAATCA---C-----ACAATATTGTCAAAACGAAATACAAAATATCAGTTCA--GGA---AATCAG--CGACATGGA-------A------GTAT--TCATAAA-------A---TAT---------ATTAATCTGTTTTTAAAGCATTTCAAATTTACTCTCTTTT-AA---GACCAAATTCAGTAAAGTA--CTC-A-AACAACCA----------ATACG---AGATAATTTTG-A-TATGT--TATTTTTAATGATAACTGGTCTTAA
gi|13 : tTTAT-C-T-AAAA-TA---AAACCGCACGTAATTAAAC-----ATG-T--TAAA----TATCAGTT-G------TTTG-----ATACACATG-----AATAT-----ATGTACATA--TTAACATATATTTGTCCAAGCTTGTTAAAGCACAGTAAAATATATTGG--AATAGCT---TATCAG----AAACG--ATATGTAA------GTATATTTATAAACTATATTA--ATATGTTAATGAAACTTAGCTACACT----GCGCTGCGTATTTACTTT-ATT---A---AAC----TTAG-TGCGCTA--CATTGTAACAACCTACATGTGTATTTACA---CGACAATTA-----------GTAT--TTAATTACAATTGATATCAAGCCATTTATCAGTGAAATA-ATTGGAATCTTAGGATTA
gi|14 : ttTAATTTTATTCTTTATTTTC--TCA------TTTGTGGAGAGCAAATACGTAAACTAA---AACATC---AAATTACAATATAAATAGAGCA-A-AA--AATA---ATAATGCA-----TA------AAGTACAGAACAAGTAAAAAAAAACGAATATCA-ATTTTAC----ACAATCT-AATGCAATATAT---A-----GGGCAAAATAAATTTCATGC------------TAAATTATACTCCATTAAAC-----ATA-T--TAAATGTTTGT------AAT----TTTATACATATG---ATG-----G---C-----ATG---ATACCTGAACA---A-----ACACTAGTTTTGAATCGTAGTTCAATAAGTTAGA-AA--GAA---AATCAGTTCTATACAC
gi|15 : TGATTGTATTCTTTATTTCA--TCC------TATATGAAGAGCACATACATACATTAG---AATAAC---AAATAACAAAATAAATAAGAAA-A-TA--AATA---ATA---CA-----TATGCATGTAATTTGAGGC---------AAACTGAATAACA-ATTGTAT----ACGATAT-AATGCAATATAT---GTTA-TGAGCAAAATAAATATTATGC-T--AAA-AA--TAAA--ATTCTTCATTAAAC-----AAA-T--TAAA----TGT------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAATA---A-----Cca
gi|16 : tGGTTTGATTCTTTATTTCC--ACC------TATGTGGAAAGTACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--CATA---ATG---CA-----TA------TAACAGAAAGC---------AAAAT----------TTATA-----ACAATAT-AATGTAATAAAT---GATA-TGAGCAAAATAAATGTTATGCTT-AAAA-AG--TAAGTTATACTTCATTAAAC-----ATA-T--TAAA----TGG------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---t
gi|17 : TGATCTGATTCTTCATTTCC--TCC------TATATTGGGAATATATACACTCAATGA---AATAAC---ACATAACAATATAAATAGAGAA-A-AAT-ACTA---GTG---CA-----TA------TATCACAAAAA---------CAAATGAATATCA-AGTTTAC----ACAATTTAAACGCAGTACTT---GGTA-TTAACAATTTGAGGGTTATGC-T-ATAA-AT--TGAATTGTACTTCATTAAACTTTTTATA-T--TAAA----TGT------
gi|18 : tTGATTTGGTTCATCATTTCC--TTC------TATGCTGAGAGCACATACATACAATAA---AATAAC---AAATCACAATATAAATAGAGAA-ATGAATAATA---ATG---CA-----TA------TATCACAAGGCGGCA-----AAAAGGAATATCA-ATTTTAC----ACAAT-T--ATGCAGTATTT---GCTA-TTAGCAAACCAAATGTAATGC-T-TAAA-AT--CAAATTATATTTCATT
gi|19 : ttTGATTTGATTCTTTATTTCCC-TCC------TATGCGGAGAGCACATACATACAATAA---AATAAC---AAATAACAATATAAATAGAGAC-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATGAATAACA-A--TTAC-----CATTAT-------GTATTT---GATATTGAA-AAAATAAGTTTTATG
gi|2 : gtttCC------TATGTGGAGAGCACATACATATAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATTAACAACA-ATTTTAC----AGAATAT-AATGTAATATAT---GTTA-TGTGCAAAATAAATGTTATAA-T-AAAAGAA--TAAATTATACTTCATTAAAC-----ATA-T--AAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG----TAACCAAACA---C-----CCAATCTTGTCGAAACGAAATACAAGATATTAG--AA--GGAAATAATCAATTCTACACGCAAAATGTCA------GTAT--TGATAAA-------A--GTA-----------------TACACT----GCACTTCGCATTTAATCT-GTCT-TA---GACCAAATTAGGCGTAGAG--CGC-G-AACAACCT----------TTACA---AGACAATTATG-A-TTTTT-GTGTCATTGGTGACAATAGGCCTTAAGC-----------------------CATCTTAGGAGAGAGA--GCTGCAAATGCATTGAA-TGGCACAGGACCGA--TTATCGTATACATTGATTTCCAGAGATTTTCTATAACAATTTCAGATTCGTAACATTCTAAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGAGAACGTGTCGCTGAAGA-GA------CGGCATATGCTATTTATAGTAGTTTGACATTCAGCGGTATATC-TAGGGTATAGTTTTAATATGTGCCAGAGTTCACAAACATTtacaacgtttaacatttgtaatgttc
gi|20 : TGAAATT-ATCGGCATCTTAGGCGTGAGG--TCTACAAATGTGTTAAA-T----CAGGAATAA--TCATGGTGTAAATTGATTCCAAGATATGTTCTCTTGCAGTGTCTTTTTCACTTCACTCTA-----------------CATACAAATACGATCTCTGTTA-ATTAAGGACACCGTTTTGTAAGCGTGTCGCTAAAGA-GA------CGGCgtacaacattggtttgacagaaataaattctgtaagggtactgtctaggtatattctatttgaccaattactctcttcagctcagttgatattggtgtta
gi|21 : TGATTTGATTCGTAATTTCT--TCCCTCTTGTATATGGAGAGCATATACATACAATAATACAATAATACAAAATTAAAATAAAAAT-GAGAACA-TAT-ATTG---ATA---TACGATCTA------TACCACAAAAC---------AAA
gi|22 : ttGATTCTTTATTTCC--TCC------TGCACGGAGAG--CATACATACAATAA---A--AAC---AATTTACAATGTTACTAGAG---A-GA--AACA---CTG---CT-----CA------TAAT------C---------GAAATAACTATCA-ATTCTAC----ACAACTT-GATGc
gi|23 : aactaATAAC---AAATTACTATATAAATAGAGAA-A-AAT-AATA---ATA---CA-----TA------TATCACAAGAC---------AAAAT
gi|3 : GCCATTAAACAGTGAAATT-ATTTGCTTCTTATGATTAAGA--GCTACAAATGCGTTGAAATGGCACAGAATCGA--TTATCGTATAAATTGATTTCTAGAGATTTTATAGAACAGTTTTAGGTTCGTAATATTCTAAAATAAGATG-TATAGTTATACAAAGAACACTTCTGTTACATTTTTAACACATGTTTGTGAACGTGTCACTGAAGA-GA------CAACATATGATATTTATAGTACTTTGACATTCAGT-GTATATC-TTGGGTACAGTTTTGATAGATGCCAGAGTTTACCAAAATTt
gi|4 : cTGATTTGATTCTTTATTTCC--TCC------TATGTGGAGTGCACATACATACAACAG---AATGAC---AAATTACAATTTAAATAGAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------AAAATTAATAACA-ATTTTACGGTTACAATAT-AATGTACTATAT---GTTA-TGAGCAAAATAAATGTTATGC-T-AAAA-AA--TAAATTATACTCCATTTAAC-----ATA-T--TAAA----TGG------A------TTGA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTTGAAACGAAATACAAGATATTAG--AA--GGA---AATTAGTTGTACAAGAAAACTGTCA------GTAT--TGATAAA-------A--GTAT---------ACTAAGCTACACT----GCACTTCGCATTTAATAT-GTTT-AA---GACCAAATCAGGTGCAGAG--CGC-A-AACAACCT----------TTACA---AGACGATTATG-A-TTTCT----TCATTGGTGACAATAGGTCTTAAGCCAATAATCAGTGCAATT-ATTTATATTTTAGGAGTAAGA--GCTACAAATGCGTTGAA-TGGTACAGGACCGA--TTATCGTATAAATTGTTTTCCAGAGATTTTTTTTAACAATTTCAGATTCGTAACATTCTCAAATAAGATG-TATAGTTATACAAGTAACACCTCTGTTACATTTTGGACAAATCTTTGTGAACGTGTCGCTGAATATGAATATGTCAGCATATGATATGTATAGTACTTTGTCATTCAGCGGTATATC-TAGGGTAATGTTATGATAGATGCCAGAGTTCACAAACATTgaacaacattggtttgacagacataaaatatgtaagggtactatctaggtatattctatttaacaacttactatttttaactctgttatataaaagtttttttttccatttaaattcccaaaacagcaaagccactcagaatcgaagatagagaatacttattaaaatacgcataatatccggtatgaaaccgagttgatttgatggatgagtttgatattggaaaagcctgtaaataaaaatatgtgttactctttggttacagtttgaccgacacaattaaccaaaaaatgacatttttctttcatcaattaaaatttctaaagtctgtgactcaaatttatcttaaacacacgccagttctgttatacactggtacatattgcattattttaacaaaaaaaaacacacaattgtttggatttttctagtgttaacatttgctgtttggttt
gi|5 : TA-TGAGCAAAA-AAATGTCAGGC-T-AGAA-AT--TAAAGTATATTTCATTAAAC-----ATAGTAATAAAGTTTTGT------AATTTTGTTCAT----ATG---ATT-----T---C-----ATG---ATACCCAATCA---A-----CTAATCCTGCCGAAACAAAATACAAGATATAAG--AA--GGA---ACTCAATTCTACACACAC--TGT--------GTAT--TAATTTG-------TTTGTAA---------ACTTTGCAACAGT----ACACTGCACATTT-CTGT-GTTTTAA---GACTAAATTAGGTGCAGTG--CGC-G-AACACCCG----------TTACA---AGACAATCGTG-A-TTTT--GTATCATTGA----------CCATAAGCC-TTAATCGGTGCAAAT-ATTTGCATCTTTGGTTTGAGA--ACTACAAATGCGTTGAA-TGGTACATGACCAC--TTATTGTTTGAATCTATTTTAAGATATTTTTCCCAACATATTCTGATTCGCTACATTCTAAAAT-----G-TAAAGTTATATAAACAACAACTCTGTTGCACTTAAGACAAGCCTTTGTGAACGCATCGCTTAAGA-GA------CGGCATATTCTATATACAGTACGTTGACATTCACTGGTATATC-TAGGGTAT
gi|6 : ttaGATTTGATGCTTTATTTCC--TCC------TATGTGGAGAGCACATACAAAAAATAG---AATAAC---AAATTACAATATGAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAAAAAAAGGC---------AAAATGAATAACACATTTTAC----ACAATAT-AATGCAATAATT---GTTA-TGAACAAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACCTCATTAAAC-----ATT-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACTGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGTCAGTACCCGTAT--TTATAAA-------A--GCAT---------ACTTCGTTACACT----GCACTTCACATTTAATCT-GTTC-AA---GATCAAATCAGGTGCAGAG--CGC-G-AACTACCT----------TTACA---AGACAATTACG-ATTTTTT-GTATCATTGGTGACAATAGGCCTTAAGCCATTAATCAGTGCAATT-ATTTGCATTTTGGGATTAAAGCTGCTACAAATGCGTTGAA-TGGCACAGGACAGT--TAATCATAT---TTGATTTCCAAAGACTTTCTCTTATAGTTCCGGATTTGTTACAttcgcaaacattgctgaacattgattttacttgaacagaattggtaagagtactctgtgtttattctatttgactaataactttcttcaactctgttagtattgataattatcagttccttccatttaaattaagatagcaaaatgcgctaaacattcagatata
gi|7 : CAAACA---A-----TAAATTCTG-CGAAATGA----C--GCTATTGG--AG--AGA---AATTA----TAAA---AAAA----A------ACAT--TGATATA-------C--ATTT----------CTTAGCCACATT----CTATTTCGCATATACTCT-G--G-AAGC-GATCATGTTCAGTGCAGAGGACTT-G-AAAAAA-------------TATATTGAGATAATTACG-A-TTTCT-ACTTCATCAGT--CAAT----CTTAAGCCATTAATCA-TTTAATTAATTTGATTCTCAGAAGTGAGG--CCAACACGTCCG-TGAA-T-----AAATCCGAGTTTGTGGTATAAATATATTTCAGGAGAGGTTCTC--AC---------TTAATAA-GCTCTAGAATGAAATGAAAAAAATATATAAATAA----------ATAGTTT--ACGACTCTT----------------AAAG-GA------TGGCGTATAAAAAATACAGTATTT------------GTATTTCTTAAGGTATACTTTT-ATAGCTGCTTGATTTCACATACATT
gi|8 : tataATAG---AATAAC---AAATAACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TAATTA--TAATACAAGGT---------AAAATGAATAACACATTTTAA----ACATTAT-AATGCAATAAAT---GTTA-TGAGCGAAATAAATGTTATGC-T-AAAA-AA--TAAATCATACTTCATTAAAC-----ATA-T--TAAA----TGT------A------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATCTTGTCGAAATGAAATACAAGATATTAG--AA--GGA---AATCAGTTCTACACGCAAAATGCCA------GTAT--TTTTAAA-------A--ACAT---------ACTTAGCT-----------ACTTCACATTTAATCT-GTTT-AA---GATCAAAGTAGGTCCAGTG--CAT-G-AACAACCT----------TTACA---AGACAATTATG-ATTTTTT-GTATCATTGGTGACAGTAGGCCTTAAGTCGTTAATCAGTGCAATT-ATTTGTGTCTTGGGATTAAGA--GCTACAAATGTGTTGAA-TGGCACAGGACAGT--TTATCATATATTTTGATTTCCAGAGACTTTCTTTAACAGTTCCAAATTTGTAACAatataacatgtgtttaaatgaaacgaaatcagcaagagtctgtataaattcatttattcggtttgaacaaatgactctcttctactctgttaacctttatgtttatatatctttcccattt
gi|9 : TTGATTATTTATTTCC--TCC------TATGTGGAGAGCACATACATACAATAG---AATAAC---AAATTACAATATAAATAAAGAA-A-GA--AATA---ATA---CA-----TA------TAACACAAGGC---------ACAATTAATAACA-ATTTTAC----ACAATAT-AATGTAATATATTATGTTA-TGAGCAATATAAATGTTATGC-T-AAAA-AAA-TTAATTATACTTCATTAAAC-----ATA-T--AAAA----TGA------T------TTTA-----ATG---ATG-----A---C-----ATG---ATAACCGAACA---A-----CCAATATTGTTGAAACGAAATAAAAGATATTAG--AA--GGA---AATCAGTTCTAGACGCAAAATGTCA------GTAT--TGATAAA-------A--TTAT---------ACTTAGCTACACT----GCACTTCCCATTTAC-CG-G--T-AATCTGATCAAATTAGGTGCAGAG--CGC-A-AACAATAT----------TTACA---AGACAATTATG-ATTTTTT-GTATCATTTGTGACAATCGGTCTTAAGCCATTAATCAGTGCAATT-ATTTGCATCTTAGGAGTAAGA--GCTACAAATGCGTTGAA-GGACACAGGGCC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): GTATTTCTTAAGGTATACTTTTATAGCTGCTTGATTTCACATACATTATATAACATGTGTTTAAATGAAACGAAATCAGCAAGAGTCTGTATAAATTCATTTATTCGGTTTGAACAAATGACTCTCTTCTACTCTGTTAACCTTTATGTTTATATATCTTTCCCATTTTACTTTTATTTTATTTTATCGAAAGCAACGAAGTCAATCTATGTTGAATGTAGAAACTAGTACACATCATGTGGACAGGCGTATATATCGGGTGAAGAGCGAATTGATTCTTTAGTGAGCTATGTGCTTTCAAAGATTTTATCATATATCACTGGTATCGCATAAGTTTGTGAATAGAAATATATGGTCGCAGGTTGACCGATACAAGCGACAAGTATTCACTAATTTAATAACATTTTGATATTTTGTGAATCAGTTAAAATCAAACCGATTCTAGTATACATTTCGTCATATTGGATTATTTTAACAACACAAAA