lowQualScore : 2222222222222222 1111111111111 11111111111111111111111 2222222222222222222222222222222222222222222222222222222222
lowQualScore : 11 1 33 222 1 1 1 11 11 33333 1 11 1 11 2222 22 33 2222 2222 33 2222 555555555 11 44444444444444 11 2222 33 11 1 1 333 33 0000000000000000 111111 33 1 9999999999999999 1 1111111111111 11 11 1 1 1111 888888888888888888888888888888888 22 2 1 11 1111 1 1111 111111111 333333333333333333333 444444 1 2222 5555555 1 2 11 22 33333333333333333333333 2222 1 1 1 1 2222 11 7777777777777777777777 33 1 222 555 1 222222222 1 777777777777777777777777777 33 11 2 0000000000000000000000000000000000000000000000000000000000
lowQualScore : 22 5 44 6 6 6 3 111 3 6 1 6 6 0 6 0 7 5 0 00 5 1 5 66 77 77 33 7 3 22222 9 1 4 44 0 7 3 00 1111 0 3 00 2 0 9 3 00 9 2222 8888 2 33 1 6 7777 2 666666666 4 6 0 9 00 77777777777777 55 0 6 8888 1 1 33 22 7 6 6 7 666 44 6 8888888888888888 555555 2 22 5 1111111111111111 6 6 7 1111111111111 66 99 2 55 1 3 6 3 7 2222 7 111111111111111111111111111111111 00 3 1 4 3 44 7777 5 3 6 4444 0 22 00 666666666 444444444444444444444 555555 5 8888 4 2 2222222 66 5 55 0 22 33 77777777777777777777777 9999 5 6 7 7 6 5 7777 4 44 3 66 7777777777777777777777 8 3 66 0 1 4 0 4 6 66 888 7 6 0 333 000 6 2 444444444 3 333333333333333333333333333 00 7 00 3 6 0 6 6666666666666666666666666666666666666666666666666666666666 6 6
lowQualScore : .. . .. . . . . ... . . . . . . . . . . . .. . . . .. .. .. .. . . ..... . . . .. . . . .. .... . . .. . . . . .. . .... .... . .. . . .... . ......... . . . . .. .............. .. . . .... . . .. .. . . . . ... .. . ................ ...... . .. . ................ . . . ............. .. .. . .. . . . . . .... . ................................. .. . . . . .. .... . . . .... . .. .. ......... ..................... ...... . .... . . ....... .. . .. . .. .. ....................... .... . . . . . . .... . .. . .. ...................... . . .. . . . . . . .. ... . . . ... ... . . ......... . ........................... .. . .. . . . . .......................................................... . .
lowQualScore : 00 0 00 0 0 0 0 555 0 0 0 0 0 7 0 7 0 0 0 22 4 7 7 66 44 99 11 3 2 55555 0 2 0 55 8 0 3 77 2222 8 2 00 5 2 8 0 00 0 7777 3333 5 55 2 0 2222 5 555555555 0 5 2 8 77 33333333333333 77 7 0 3333 0 0 00 00 0 0 0 0 000 00 0 0000000000000000 555555 5 00 0 0000000000000000 0 0 0 0000000000000 55 00 5 55 0 7 3 7 0 0000 7 000000000000000000000000000000000 00 7 0 7 3 33 3333 0 7 7 3333 8 55 55 000000000 000000000000000000000 333333 0 3333 0 5 5555555 55 0 55 0 00 00 00000000000000000000000 0000 0 0 0 0 0 0 5555 0 55 0 55 0000000000000000000000 3 2 88 8 2 5 5 0 0 00 555 3 0 7 333 333 0 3 333333333 3 000000000000000000000000000 77 7 77 7 7 7 7 3333333333333333333333333333333333333333333333333333333333 0 0
consensus : NCATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAGNTTTAGAATAACNTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATT-GAACAAGTTCGATAC-AAGACTANAAAAAGCTCT--ACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATCTAGANATTC-ATTTAAACCC-ACACCAAGATATTTATAGTTATGNCA----TATTTCAATAAT-AGTATCACCAATTCTNAAAATAAATGCAGTAAC--A-TTT----TTTTCTTNTTTCGGAAGTGAAT--NATTTTTGTCTTGC---GTATTNACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATATACTGTAAATGCTCTTCATT----TGGGGCCGTTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGGATGCANCGCCATTNGTAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAANNAAGGNAATNTGTNNATTTACCATTTACGTCAATNGTAGNTTTACGNTTNTCGTATAAACTTTTAANTGATTAA---AAA-----ANAT--ACCTNTT-ACACCC--ATTTT-GCNAGTTTTATATATAAA-ATATCNCTATTTACGCGATCAAAANCTTTTGCNATGTCGACAAAGCGCGC--AAACG--TA-TCTA-A--TTTTCGTGTT-TTCCTATTTCCA---TATT-TT----GCTNGANAGACTATAAGCGCGNTCTTCACANNATCTGTTTCATCTGAAACCAT--TGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTANTATGTTNGTATNNAGTTTGCNTNNCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGGGTCGTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATANAGACGNNACANTATGCGATT---TAA---ATTCATTGAATAA-GATT--TT-AACAATNN------AATTG-A--TGAA-N----ATTTTT--AAANACCTCA-TTCGGAAGACAATCGATT--CCAACTG----ATG---GCNTTAGCAGATGAAA----AAAAATACTTGTTTGCATTCCTCTTTGTTA
Reference ( gi|1 ) : ACATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATT-AAATAAGTTTGATAC-AAGACTAGAAAATGCTCT--ACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAAT-TGTATCACCAATTTTTAAAATACCTGCAGTAGC--A-TTT----TTTTCTTCTAACGGAAATGAAT--CATTTTTGTCTTACAC-GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATTGATTAA---AAA-----AAAT--GCCTGTT-ACACCT-TATTTT-GCCAATTTTAAATATAAA-ATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAACACGT--AAATG--TA-CCTA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGTT----GTTAAAGAGA--ATA--TGTGTTCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAGC---ATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTCATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGGTACAATATGCAACT---TAAGTCATTCGTTAAATAAAGAGT--TT-AACAATTT------GATTG-A--TGGA-T----ATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTAAGCAAATGAAATATGAAAAATATTT-------TACCTTTTTGTCATA
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCT--ACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTT
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATT-GAACAAGTTTGATAC-AATACTATAAAAAGCTCT--ACTAGCTGATTCTGTTAAAA
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATT-GAATAAGTTTGTTAC-AAGACTAGAGAA-G-TATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAAT-AGTATCACAAATTCTGAAAA
gi|16 : TGCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATT-GAACAAGTTCGATAT-AAGACTAAAAAAGGCACA--ATTGGCTGATTCTGTTAAAACATTAGCagaatgtattt
gi|6 : aTTTATT-GAACAAGTTTGATAC-AAGACTACAAACAACTCT--ACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAAT-GGTACCACCAATTCTGAAAATAAATGCAGTATCTTA-TTT----TTTTCTTCTTTCGGGAGTGAAC--GATTCTCAT-TGACATAGT-TTTATTTCCAT
gi|19 : gcaaTCTATT-GAACAAGTTTGATAC-AAGACTGGAAAAAACTCT--ATTGGCTGATTCTGTTat
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCT--CCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGT--TCTGTAT-ACCA--TTTTAGAA
gi|10 : CA----TAGTTCAATAAT-AGTATCACTATTCTATAAAATAAATGCAGTAAC--ATTTT----TTTTCTTATTTCGGAAGTGAA---CACTTTTATCT---------TTTA-TATC----TGTCTG--GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCGTA-AAACCAT
gi|18 : AAATAAATGCAATAAC--A-TTTATTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT
gi|15 : TCTTCTTTCAGTAGTGAAT--ATTTTTTGTCTTGCTG-ATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA--------G-----CTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|2 : AGATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATAGATTCAGGTAAATTATCAGAT--ACATGT--AC-CCC-AATATTAGCTAATTCTA--TATCAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCAT----TTTCTATCTC-----TATTTTTCTATGTTTAAGAAA--A-A--CGTCATCTTCACACGATCTATTTCATCTGAAACCAT--TGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTGT----------CT---CTT----TAATTAGATGGCACCCTTGGGTCGTTTT---AAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGAC-ACA-GTGATT---TAA------CATTGAACAAACAGTCATTAAACAATGTCCATAAAATTGTAACTGAA-TAATCATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTTAGCAGAT
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGTGATTAA---AAT-----ATATTGACCTATTCACATC----TTTT-GTAAGTTTTATATATAAA-ATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAGCACAC--AAATA--TA-TCTATA--TTCTT-TGTTGTTCCTATT
gi|7 : ccATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAATGATTAA----AA-----AATT--GTCTTAT-ATACCTATATTTT--CCAGTTTTATATATAAT-TTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACATGCTT--TAATG--TATCTTA-ATCTTTTCTTGTT-TTCCTAGTT-CATGTTATT-TT----GCTAGATAGACTATAAGTGCGTTCTTCACAATA-CTGT
gi|3 : TCAACAAAGCATGC--ATACA--TA-TCCA-A--ATTCTGAGTT---CCTATTTCTAAT-TAGTGTT----G
gi|14 : atAGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTTA-GTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACATTGCAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : TTTGTAGGAACTCTTAGGTCATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGGTACATTATGCGATT---TAAAGCATTCATTAAATAATGATT--TT-AACAATTG------AAATG-A--TGAA-A----ACATTTAAAAACA--TCA-ATTGGAAGACAATCGATT--T--ATTA----ATGA
gi|3 : ATTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGTAACATAATGCGACTTTATAA---ATTCATT--AT---GATC--TT-AATAATAA------GATTG-A--TGAACC----ATTTGT--AAAAACTTCATTTC-GAAGACAATCGATT--CCATCTGTTTCATA----CATTAGC---TGAAA----AAAAATACTTGTTTGCATTCCTCTTTGTTctttatcatcagaatttggattcaataaatttgaaaattatgtgtgccatatttctaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): TATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATAAAATGTTTAAAGAGATTAAAATGAATTAAATATTGATCC
Alignments
lowQualScore : 1 1 1111 1 1111 2222 3333333 11 2222 8888888888888888 333 2 11 11 111 111 22222 11 1111 33333 1 11111111111 11 111111 333333333333 222222222 2 22 2 222 1 111 111 111 3333 1 33333 11 222222 1111 333333 11 1 11 55555555555 4444 3333333
lowQualScore : 2 88 1 7 1 8 5 2 0 5 33 444 1 88888 0 1 99 2 0 33 7777 9 0 99 1 4444 1111 1 44 8 8 1111111 11 9 333 4 2 3 3 4 0 1111 55 4 4 333 88 5555555555555555 0 9999 11 66 2 3 555 2 0 4 88 88 4 4 22 44 1 22 1 2 1 44444 2 3 0 000 444 55555 44 33 1111 44444 1 3 4 11 1 4 2 1 2 44 0 4 11111111111 4 3 8888 11 888888 2 888888888888 0 11 1 444444444 0 1 22 3 4 77 4 0 2 2 4 111 2 4 3 4 4 2 4 1 0 1 22 0 1 22 2 0 0 3 6 4 444 000 1 1 1 22 77 3 777 8888 0 44444 33 888888 22 4444 222222 33 1 4 0 6 2 33 2 66666666666 1 66 2222 2222222 4
lowQualScore : . .. . . . . . . . . .. ... . ..... . . .. . . .. .... . . .. . .... .... . .. . . ....... .. . ... . . . . . . .... .. . . ... .. ................ . .... .. .. . . ... . . . .. .. . . .. .. . .. . . . ..... . . . ... ... ..... .. .. .... ..... . . . .. . . . . . .. . . ........... . . .... .. ...... . ............ . .. . ......... . . .. . . .. . . . . . ... . . . . . . . . . . .. . . .. . . . . . . ... ... . . . .. .. . ... .... . ..... .. ...... .. .... ...... .. . . . . . .. . ........... . .. .... ....... .
lowQualScore : 5 00 0 3 0 0 7 0 4 0 00 666 4 66666 0 0 44 5 0 55 0000 0 6 00 2 8888 2222 0 88 0 0 8888888 55 8 888 2 5 5 0 2 8 2222 22 0 0 555 00 5555555555555555 7 0000 77 55 5 0 000 5 0 0 55 00 0 0 00 77 0 00 0 2 0 00000 8 8 6 000 000 00000 22 88 8888 88888 0 2 0 22 2 2 0 0 5 22 5 6 44444444444 6 8 8888 00 666666 5 333333333333 7 77 0 777777777 7 0 00 7 0 55 0 0 5 5 0 555 5 0 0 0 0 5 0 0 7 0 00 7 0 00 0 7 7 7 7 0 000 888 4 4 0 00 00 2 555 2222 5 00000 88 888888 00 8888 222222 88 0 2 0 0 5 88 5 00000000000 0 99 5555 0000000 0
consensus : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC--A-TTT----TTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACC-TATATTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTTCCA-G-TATT-T---TGTTAAAGAGA-TATAAGCGCGTTCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTT---AAG-CATTCATTAAAT-AA--GAT--TTTAACA------ATNAGATTG-A--TGAA----C-ATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCAGATGAAATATGAAAAATACTTGTTTGCATNCCTCTTTGTCA
Reference ( family-1717 ) : NCATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAGNTTTAGAATAACNTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTCGATAC-AAGACTANAAAAAGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATCTAGANATTC-ATTTAAACCC-ACACCAAGATATTTATAGTTATGNCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC--A-TTT----TTTTCTTNTTTCGGAAGTGAATNAT-T-TTTGTCTT--GC--GTATTNACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATATACTGTAAATGCTCTTCATT----TGGGGCCGTTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGGATGCANCGCCATTNGTAAAAATACAACAAAAGTCG---GCGAGAT-ACGTCCCCTTGTTTAACACCTAATTTGATAAAAANNAAGGNAATNTGTNNATTTACCATTTACGTCAATNGTAGNTTTACGNTTNTCGTATAAACTTTTAANT-GATTAA---AAA-----ANAT--ACCTNTT-ACACC-CAT-TTTGCNAGTTTTATATATAAAATATCNCTATTTACGCGATCAAAANCTTTTGCNATGTCGACAAAG--CGCGCAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTTCCA---TATT-T---TGCTNGANAGACTATAAGCGCGNTCTTCACANNATCTGTTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTANTATGTTNGTATNNAGTTTGCNTNNCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATANAGACGNNACANTATGCGATTT---AA---ATTCATTGAAT-AA--GAT--TTTAACA------ATNNAATTG-A--TGAA----N-ATTTTT--AAANACCTCA-TTCGGAAGACAATCGATT--CCAACTG----AT---GGCNTTAGCAGATGAAA----AAAAATACTTGTTTGCATTCCTCTTTGTTA
gi|1 : CATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATTA-AATAAGTTTGATAC-AAGACTAGAAAATGCTCTACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAATTGTATCACCAATTTT-TAAAATACCTGCAGTAGC--A-TTT----TTTTCTTCTAACGGAAATGAATCAT-T-TTTGTCTTACAC--GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATT-GATTAA---AAA-----AAAT--GCCTGTT-ACACCTTAT-TTTGCCAATTTTAAATATAAAATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAA--CACGTAA--ATGTACC-TA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGT---TGTTAAAGAGAATAT----GTGTTCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAG---CATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTC-ATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGGTACAATATGCAACTT---AAGTCATTCGTTAAATAAA--GAG--TTTAACA------ATTTGATTG-A--TGGA----T-ATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTAAGCAAATGAAATATGAAAAATATTT-------TACCTTTTTGTCA
gi|10 : aCA----TAGTTCAATAATAGTATCACT-ATTCTATAAAATAAATGCAGTAAC--ATTTT----TTTTCTTATTTCGGAAGTGAA-CAC-T-TTTATCTT--TT--ATAT---CTGTC----TG------GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCG-TAAAACCATta
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AATACTATAAAAAGCTCTACTAGCTGATTCTGTTAAAA
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA-------------GCTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCTCCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGTTCT-GTAT-ACC-ATTTT-AGAA
gi|14 : AGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTT--AGTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACATTGCAAT
gi|15 : TCTTCTTTCAGTAGTGAATATT-T-TTTGTCTT--GCTGATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|16 : GCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATTG-AACAAGTTCGATAT-AAGACTAAAAAAGGCACAATTGGCTGATTCTGTTAAAACATTAGC
gi|17 : atATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATA-AAATGTTTAAAGAGATTAA---AA
gi|18 : tAAATAAATGCAATAAC--A-TTTATTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT--tgaattaaatattgatcc
gi|19 : TCTATTG-AACAAGTTTGATAC-AAGACTGGAAAAAACTCTATTGGCTGATTCTGTT
gi|2 : GATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGAT-ACGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATA-GATTCAGGTAAATTATCAGAT--ACATG-T-ACCCC-AATATTAGCTAATTCTATAT-CAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCA---T-TTTCTATCTCTA---TTTT-TCTATGTTTAAGAA-----AAACGTCATCTTCACACGATCTATTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTG---------------TCTCTT--TAATTAGATGGCACCCTTGGGTC-G---TTTTAAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGACAC-A-GTGATTT---AA------CATTGAAC-AAACAGTCATTAAACAATGTCCATAAAATTGTAACTGAATAATC-ATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTTAGCAGAT
gi|3 : aTCAACAAAG--CATGCAT--ACATATC-CA-A--ATTCTGAG---TTCCTATTTCTA----ATT-
gi|3 : atTTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGTAACATAATGCGACTTTATAA---ATTCATT--AT-----GAT--CTTAATA------ATAAGATTG-A--TGAA----CCATTTGT--AAAAACTTCA-TTTCGAAGACAATCGATT--CCATCTGTTTCAT----ACATTAGC---TGAAA----AAAAATACTTGTTTGCATTCCTCTTTGTTAagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : attcaacaaagcatgcatacatatccaaattctgagttcctatttctaattagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaataTTTGTAGGAACTCTTAGGTC-ATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGGTACATTATGCGATTT---AAAGCATTCATTAAAT-AAT-GAT--TTTAACA------ATTGAAATG-A--TGAA----A-ACATTT--AAAAACATCA-ATTGGAAGACAATCGATT--T--ATTA----AT---GACTTTATCAatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCTACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTTtcagaatttggattcaataaatttgaaaattatgtgtgccatatttctaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
gi|6 : TTTATTG-AACAAGTTTGATAC-AAGACTACAAACAACTCTACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAATGGTACCACCAATTCT-GAAAATAAATGCAGTATCTTA-TTT----TTTTCTTCTTTCGGGAGTGAACGAT-T-CT
gi|7 : gcaaATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAAT-GATTAA---AAA-----AT-T--GTCTTAT-ATACC-TATATTTTCCAGTTTTATATATAATTTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACA--TGCTTTA--ATGTATCTTA-ATCTTTTCTTGTT-TTCCTAGTT-CATGTTATT-T---TGCTAGATAGACTATAAGTGCGTTCTTCACAATA-CTGTcattgacatagttttatttccatat
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATTG-AATAAGTTTGTTAC-AAGACTAGAGAAGTATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAATAGTATCACAAATTCT-GAAAAAGAATGTA
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGT-GATTAA---AAT-----ATATTGACCTATTCACATC---T-TTTGTAAGTTTTATATATAAAATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAG--CACACAA--ATATATC-TATA--TTCTT-TGTTGTTCCTATTttt
Alignments
lowQualScore : 1 1111 1 1111 2222 2222222 11 2222 222222 333333 222 1 11 11 111 111 22222 11 1111 1111 11 11 11 111111 3333333333333333 55555555 11 1 11 1 222 1 111 111 11 4444444444 11 2222 1111 33333 11 1 11 77777777777777777777777777777777777777 11 222222222
lowQualScore : 1 22 7 8 5 0 5 33 333 1 88888 8 1 99 1 0 66 7777 9 0 99 1 4444 1111 44 8 8 9999999 00 9 333 4 2 3 3 4 0 1111 3 1 1 1 1 22 999999 000000 1 0 22 1 1 111 1 5 1 88 88 1 1 1 1 66 1 1 3 3 0 000 444 55555 44 33 1111 9999 0 3 1 11 1 4 0 2 33 7 11 3 11 4 3 8888 11 888888 8888888888888888 77777777 88 3 1 88 1 5 1 1 1 111 1 1 1 1 1 1 1 1 2 3 6 1 444 000 1 1 1 11 1 8 0000000000 66 3 0000 7 22 4444 11111 33 1 0 2 33 2 22222222222222222222222222222222222222 55 555555555 1
lowQualScore : . .. . . . . . .. ... . ..... . . .. . . .. .... . . .. . .... .... .. . . ....... .. . ... . . . . . . .... . . . . . .. ...... ...... . . .. . . ... . . . .. .. . . . . .. . . . . . ... ... ..... .. .. .... .... . . . .. . . . . .. . .. . .. . . .... .. ...... ................ ........ .. . . .. . . . . . ... . . . . . . . . . . . . ... ... . . . .. . . .......... .. . .... . .. .... ..... .. . . . .. . ...................................... .. ......... .
lowQualScore : 0 00 3 0 7 4 0 44 111 4 66666 8 4 44 0 0 88 0000 0 6 00 2 8888 2222 88 0 0 1111111 55 8 888 2 5 5 0 2 8 2222 2 0 0 0 0 00 555555 555555 0 7 00 0 0 555 0 5 0 55 00 0 0 0 0 00 4 0 2 8 6 000 000 00000 22 88 0000 5555 2 2 0 55 2 2 2 5 55 0 00 2 00 6 8 8888 00 666666 2222222222222222 33333333 33 3 0 55 0 5 0 0 0 555 0 0 0 0 0 0 0 0 0 7 7 0 000 888 4 4 4 00 0 0 8888888888 55 2 2222 0 22 8888 55555 88 2 0 5 88 5 33333333333333333333333333333333333333 00 333333333 0
consensus : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC--A-TTT----TTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTTCN-AG-TATT-T-----TGTTAAAGAGA--ATAA-TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGG--TACANT-ATGCGAC-T---TG---AAG-CATTCATTAAAT-AA-GATTTTAACAATNAGATTG-A--TGAAC---CATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTT---AGCAGA---TG--------AAAT-TGAAAAATACTTGT-TG-CATACCTCTTTGTCA
Reference ( family-1717 ) : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC--A-TTT----TTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTTCC-AG-TATT-T-----TGTTAAAGAGA-TATAAGCGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGG--TACANT-ATGCGAC-T---T----AAG-CATTCATTAAAT-AA-GATTTTAACAATNAGATTG-A--TGAA----CATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTT---AGCAGA---TG--------AAATATGAAAAATACTTGTTTG-CATNCCTCTTTGTCA
gi|1 : CATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATTA-AATAAGTTTGATAC-AAGACTAGAAAATGCTCTACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAATTGTATCACCAATTTT-TAAAATACCTGCAGTAGC--A-TTT----TTTTCTTCTAACGGAAATGAATCAT-T-TTTGTCTTACAC--GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATT-GATTAA---AAA-----AAAT--GCCTGTT-ACACCT-TATTTTGCCAATTTTAAATATAAAATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAA--CACGTAA--ATGTACC-TA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGT-----TGTTAAAGAGA--ATA--TGTGT--TCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAG---CATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTC-ATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGG--TACAAT-ATGCAAC-T---T----AAGTCATTCGTTAAATAAA-GAGTTTAACAATTTGATTG-A--TGGA----TATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTA---AGCAAA---TG--------AAATATGAAAAATATTT--------TACCTTTTTGTCA
gi|10 : aCA----TAGTTCAATAATAGTATCACT-ATTCTATAAAATAAATGCAGTAAC--ATTTT----TTTTCTTATTTCGGAAGTGAA-CAC-T-TTTATCTT--TT--ATAT---CTGTC----TG------GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCG-TAAAACCATta
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AATACTATAAAAAGCTCTACTAGCTGATTCTGTTAAAA
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA-------------GCTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCTCCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGTTCT-GTAT-ACC-ATTTT-AGAA
gi|14 : AGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTT--AGTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACAT--TGCAAT-
gi|15 : TCTTCTTTCAGTAGTGAATATT-T-TTTGTCTT--GCTGATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|16 : GCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATTG-AACAAGTTCGATAT-AAGACTAAAAAAGGCACAATTGGCTGATTCTGTTAAAACATTAGC
gi|17 : atTATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATA-AAATGTTTAAAGAGATTAA---AA
gi|18 : AAATAAATGCAATAAC--A-TTTATTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT--tgaattaaatattgatcc
gi|19 : TCTATTG-AACAAGTTTGATAC-AAGACTGGAAAAAACTCTATTGGCTGATTCTGTT
gi|2 : ATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATA-GATTCAGGTAAATTATCAGAT--ACATG-T-ACCCCAATA-TTAGCTAATTCTATAT-CAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCA---T-TTTCTATCTC-----TATT-TTTCTATGTTTAAGAAA----AA---CGTCATCTTCACACGATCTATTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTG---------------TCTCTT--TAATTAGATGGCACCCTTGGGTC-G---TTTTAAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGACACAGTGATTTAACAT---TGAACAAA-CAGTCATTAAAC-AA-TGT-----CCATAAAATTGTAACTGAATAATCATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTT---AGCAGA---T
gi|3 : agTCAACAAAG--CATGCAT--ACATATC-CA-A--ATTCTGAG---TTCCTATTTCT-AA-T
gi|3 : atTTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGT--AACATA-ATGCGAC-TTTAT----AA---ATTCATT--AT----GATCTTAATAATAAGATTG-A--TGAAC---CATTTGT--AAAAACTTCA-TTTCGAAGACAATCGATT--CCATCTGTTTCAT----ACATT---AGC------TG--------AAA----AAAAATACTTGTTTG-CATTCCTCTTTGTTAtagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : attcaacaaagcatgcatacatatccaaattctgagttcctatttctaattagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaataTTTGTAGGAACTCTTAGGTC-ATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGG--TACATT-ATGCGAT-T---TA---AAG-CATTCATTAAAT-AATGATTTTAACAATTGAAATG-A--TGAA----AACATTT--AAAAACATCA-ATTGGAAGACAATCGATT--T--ATTA----AT---GACTTTATCATCAGAATTTGGATTCAATAAATTTGAAAATTA--TGTGTGCCATATTTCTatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCTACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTTaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
gi|6 : TTTATTG-AACAAGTTTGATAC-AAGACTACAAACAACTCTACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAATGGTACCACCAATTCT-GAAAATAAATGCAGTATCTTA-TTT----TTTTCTTCTTTCGGGAGTGAACGAT-T-CT
gi|7 : gcaaATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAAT-GATTAA---AAA-----AT-T--GTCTTAT-ATACCTATA-TTTTCCAGTTTTATATATAATTTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACA--TGCTTTA--ATGTATCTTA-ATCTTTTCTTGTT-TTCCTAGTTCA-TGTTATT-T-----TGCTAGATAGACTATAAGTGCGT--TCTTCACAATA-CTGTcattgacatagttttatttccatat
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATTG-AATAAGTTTGTTAC-AAGACTAGAGAAGTATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAATAGTATCACAAATTCT-GAAAAAGAATGTA
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGT-GATTAA---AAT-----ATATTGACCTATTCACATCT----TTTGTAAGTTTTATATATAAAATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAG--CACACAA--ATATATC-TATA--TTCTT-TGTTGTTCCTATTttt
Alignments
lowQualScore : 1 1111 1 333333 2222222 11 2222 222222 333333 222 1 11 11 111 111 22222 11 1111 1111 11 11 11 111111 1 11 22222 4444444 11 1 11 1 222 1 111 111 11 1 2222 2222 1 111 1 1 11 1 11 777777777777777777777777777777777777 22 33333
lowQualScore : 1 22 7 8 5 0 5 33 333 1 88888 8 1 99 1 0 66 7777 9 0 99 1 666666 44 8 8 9999999 00 9 333 4 2 3 3 4 0 1111 3 1 1 1 1 22 999999 000000 1 0 22 1 1 111 1 5 1 88 88 1 1 1 1 66 1 1 3 3 0 000 444 55555 44 33 1111 9999 0 3 1 11 1 4 0 2 33 7 11 3 11 4 3 8888 11 888888 0 1 00 7 77777 4444444 88 3 1 88 1 5 1 1 1 111 1 1 1 1 1 1 1 1 2 3 6 1 444 000 1 1 1 11 1 8 0 1111 55 3 0000 0 6 666 1 0 2 3 33 1 0 2 33 2 777777777777777777777777777777777777 00 0 22222
lowQualScore : . .. . . . . . .. ... . ..... . . .. . . .. .... . . .. . ...... .. . . ....... .. . ... . . . . . . .... . . . . . .. ...... ...... . . .. . . ... . . . .. .. . . . . .. . . . . . ... ... ..... .. .. .... .... . . . .. . . . . .. . .. . .. . . .... .. ...... . . .. . ..... ....... .. . . .. . . . . . ... . . . . . . . . . . . . ... ... . . . .. . . . .... .. . .... . . ... . . . . .. . . . .. . .................................... .. . .....
lowQualScore : 0 00 3 0 7 4 0 44 111 4 66666 8 4 44 0 0 88 0000 0 6 00 2 000000 88 0 0 1111111 55 8 888 2 5 5 0 2 8 2222 2 0 0 0 0 00 555555 555555 0 7 00 0 0 555 0 5 0 55 00 0 0 0 0 00 4 0 2 8 6 000 000 00000 22 88 0000 5555 2 2 0 55 2 2 2 5 55 0 00 2 00 6 8 8888 00 666666 0 0 22 3 77777 3333333 33 3 0 55 0 5 0 0 0 555 0 0 0 0 0 0 0 0 0 7 7 0 000 888 4 4 4 00 0 0 0 8888 55 2 2222 0 5 000 2 0 8 2 88 2 0 5 88 5 555555555555555555555555555555555555 77 7 77777
consensus : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC-T--A-TTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--AT-A-TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGG--TACANT-ATGCGAC-TTA---AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AANCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTG-T--CATACCTCTTTGTCA
Reference ( family-1717 ) : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC----A-TTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATAA-TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGG--TACANT-ATGCGAC-TTG---AAGCATTCATTAAAT-AA-GATTT-TAACAATNA-GATTGATG-AACCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------GATGAAAT-TGAAAAATACTTG-TTGCATACCTCTTTGTCA
gi|1 : CATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATTA-AATAAGTTTGATAC-AAGACTAGAAAATGCTCTACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAATTGTATCACCAATTTT-TAAAATACCTGCAGTAGC----A-TTTTTTTCTTCTAACGGAAATGAATCAT-T-TTTGTCTTACAC--GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATT-GATTAA---AAA-----AAAT--GCCTGTT-ACACCT-TATTTTGCCAATTTTAAATATAAAATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAA--CACGTAA--ATGTACC-TA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGT---TGTTAAAGAGA--AT-A-TGTGT--TCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAG---CATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTC-ATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGG--TACAAT-ATGCAAC-TTA---AGTCATTCGTTAAATAAA-GAGTT-TAACAATTT-GATTGATG-GA-TATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTAAGCA---------------AATGAAATATGAAAAATATTT-------TACCTTTTTGTCA
gi|10 : aCA----TAGTTCAATAATAGTATCACT-ATTCTATAAAATAAATGCAGTAAC----ATTTTTTTTCTTATTTCGGAAGTGAA-CAC-T-TTTATCTT--TT--ATAT---CTGTC----TG------GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCG-TAAAACCATta
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AATACTATAAAAAGCTCTACTAGCTGATTCTGTTAAAA
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA-------------GCTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCTCCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGTTCT-GTAT-ACC-ATTTT-AGAA
gi|14 : AGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTT--AGTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACAT--TGCAAT-
gi|15 : TCTTCTTTCAGTAGTGAATATT-T-TTTGTCTT--GCTGATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|16 : GCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATTG-AACAAGTTCGATAT-AAGACTAAAAAAGGCACAATTGGCTGATTCTGTTAAAACATTAGC
gi|17 : atTATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATA-AAATGTTTAAAGAGATTAA---AA
gi|18 : AAATAAATGCAATAACATTTA-TTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT--tgaattaaatattgatcc
gi|19 : TCTATTG-AACAAGTTTGATAC-AAGACTGGAAAAAACTCTATTGGCTGATTCTGTT
gi|2 : ATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATA-GATTCAGGTAAATTATCAGAT--ACATG-T-ACCCCAATA-TTAGCTAATTCTATAT-CAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCA---T-TTTCTATCT-CTAT-T-TT-TCTATGTTTAAGAAA--A-----ACGTCATCTTCACACGATCTATTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTG---------------TCTCTT--TAATTAGATGGCACCCTTGGGTC-G---TTTTAAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGACACAGTGATTTAACATTGAACAAACAGTCATTAAAC-AA-TGTCCATAA-AATTGTAACTGAAT-AATCATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTTAGCA---------------GAT
gi|3 : agTCAACAAAG--CATGCAT--ACATATC-CA-A--ATTCTGAG---TTCCTATTT-CTAA-T
gi|3 : atTTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGT--AACATA-ATGCGAC-TTT---ATAAATTCATT--AT----GATCT-TAATAATAA-GATTGATG-AACCATTTGT--AAAAACTTCA-TTTCGAAGACAATCGATT--CCATCTGTTTCAT----ACATTAGC------------------TGAAA----AAAAATACTTGTTTGCATTCCTCTTTGTTAtagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : attcaacaaagcatgcatacatatccaaattctgagttcctatttctaattagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaataTTTGTAGGAACTCTTAGGTC-ATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGG--TACATT-ATGCGAT-TTA---AAGCATTCATTAAAT-AATGATTT-TAACAATTG-AAATGATGAAAACA--TTT--AAAAACATCA-ATTGGAAGACAATCGATT--T--ATTA----AT---GACTTTATCATCAGAATTTGGATTCAATAAATT-TGAAAATTATGTG-TGCCATATTTCTatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCTACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTTaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
gi|6 : TTTATTG-AACAAGTTTGATAC-AAGACTACAAACAACTCTACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAATGGTACCACCAATTCT-GAAAATAAATGCAGTATCTT--A-TTTTTTTCTTCTTTCGGGAGTGAACGAT-T-CT
gi|7 : gcaaATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAAT-GATTAA---AAA-----AT-T--GTCTTAT-ATACCTATA-TTTTCCAGTTTTATATATAATTTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACA--TGCTTTA--ATGTATCTTA-ATCTTTTCTTGTT-TTCCTAGTT-CATGTTATT-T---TGCTAGATAGACTATAAGTGCGT--TCTTCACAATA-CTGTcattgacatagttttatttccatat
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATTG-AATAAGTTTGTTAC-AAGACTAGAGAAGTATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAATAGTATCACAAATTCT-GAAAAAGAATGTA
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGT-GATTAA---AAT-----ATATTGACCTATTCACATCT----TTTGTAAGTTTTATATATAAAATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAG--CACACAA--ATATATC-TATA--TTCTT-TGTTGTTCCTATTttt
Alignments
lowQualScore : 1 1111 1 3333 2222222 11 2222 222222 333333 222 1 11 11 111 111 22222 11 1111 1111 11 11 11 111111 1 11 22222 3333333 11 1 11 1 222 1 111 111 444444444 2222 1 11 1 11 1 11 777777777777777777777777777777777777 22 44444
lowQualScore : 1 22 7 8 5 0 5 33 333 1 88888 8 1 99 1 0 66 7777 9 0 99 1 7777 44 8 8 9999999 00 9 333 4 2 3 3 4 0 1111 3 1 1 1 1 22 999999 000000 1 0 22 1 1 111 1 5 1 88 88 1 1 1 1 66 1 1 3 3 0 000 444 55555 44 33 1111 9999 0 3 1 11 1 4 0 2 33 7 11 3 11 4 3 8888 11 888888 0 1 00 7 77777 4444444 88 3 1 88 1 5 1 1 1 111 1 1 1 1 1 1 1 1 2 3 6 1 444 000 1 1 1 1 77 3 000000000 22 3 0000 0 6 00 1 0 33 3 33 1 0 2 33 2 444444444444444444444444444444444444 00 77777
lowQualScore : . .. . . . . . .. ... . ..... . . .. . . .. .... . . .. . .... .. . . ....... .. . ... . . . . . . .... . . . . . .. ...... ...... . . .. . . ... . . . .. .. . . . . .. . . . . . ... ... ..... .. .. .... .... . . . .. . . . . .. . .. . .. . . .... .. ...... . . .. . ..... ....... .. . . .. . . . . . ... . . . . . . . . . . . . ... ... . . . . .. . ......... .. . .... . . .. . . .. . .. . . . .. . .................................... .. .....
lowQualScore : 0 00 3 0 7 4 0 44 111 4 66666 8 4 44 0 0 88 0000 0 6 00 2 2222 88 0 0 1111111 55 8 888 2 5 5 0 2 8 2222 2 0 0 0 0 00 555555 555555 0 7 00 0 0 555 0 5 0 55 00 0 0 0 0 00 4 0 2 8 6 000 000 00000 22 88 0000 5555 2 2 0 55 2 2 2 5 55 0 00 2 00 6 8 8888 00 666666 0 0 22 3 77777 0000000 33 3 0 55 0 5 0 0 0 555 0 0 0 0 0 0 0 0 0 7 7 0 000 888 4 4 4 0 00 2 000000000 55 2 2222 0 5 22 2 0 55 2 88 2 0 5 88 5 000000000000000000000000000000000000 77 33333
consensus : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C-CATACCTCTTTGTCA
Reference ( family-1717 ) : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCT-NAAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AANCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT---CATACCTCTTTGTCA
gi|1 : CATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATTA-AATAAGTTTGATAC-AAGACTAGAAAATGCTCTACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAATTGTATCACCAATTTT-TAAAATACCTGCAGTAGC----ATTTTTTTCTTCTAACGGAAATGAATCAT-T-TTTGTCTTACAC--GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATT-GATTAA---AAA-----AAAT--GCCTGTT-ACACCT-TATTTTGCCAATTTTAAATATAAAATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAA--CACGTAA--ATGTACC-TA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGT---TGTTAAAGAGA--ATA--TGTGT--TCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAG---CATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTC-ATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGGTACAATATGCAACTTA---------AGTCATTCGTTAAATAAA-GAGTT-TAACAATTT-GATTGATG-GAT-ATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTAAGCA---------------AATGAAATATGAAAAATATTT-------TACCTTTTTGTCA
gi|10 : aCA----TAGTTCAATAATAGTATCACT-ATTCTATAAAATAAATGCAGTAAC---ATTTTTTTTCTTATTTCGGAAGTGAA-CAC-T-TTTATCTT--TT--ATAT---CTGTC----TG------GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCG-TAAAACCATta
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AATACTATAAAAAGCTCTACTAGCTGATTCTGTTAAAA
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA-------------GCTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCTCCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGTTCT-GTAT-ACC-ATTTT-AGAA
gi|14 : AGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTT--AGTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACATTGCAAT
gi|15 : TCTTCTTTCAGTAGTGAATATT-T-TTTGTCTT--GCTGATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|16 : GCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATTG-AACAAGTTCGATAT-AAGACTAAAAAAGGCACAATTGGCTGATTCTGTTAAAACATTAGC
gi|17 : atTATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATA-AAATGTTTAAAGAGATTAA---AA
gi|18 : AAATAAATGCAATAACATTTATTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT--tgaattaaatattgatcc
gi|19 : TCTATTG-AACAAGTTTGATAC-AAGACTGGAAAAAACTCTATTGGCTGATTCTGTT
gi|2 : ATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATA-GATTCAGGTAAATTATCAGAT--ACATG-T-ACCCCAATA-TTAGCTAATTCTATAT-CAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCA---T-TTTCTATCT-CTAT-T-TT-TCTATGTTTAAGAAA--A-----ACGTCATCTTCACACGATCTATTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTG---------------TCTCTT--TAATTAGATGGCACCCTTGGGTC-G---TTTTAAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGACAC-A-GTGATTTAACATTGAACAAACAGTCATTAAAC-AA-TGTCCATAA-AATTGTAACTGAAT-AATCATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTTAGCA---------------GAT
gi|3 : agTCAACAAAG--CATGCAT--ACATATC-CA-A--ATTCTGAG---TTCCTATTT-CTAA-T
gi|3 : atTTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGTAACATAATGCGACTTT---------ATAAATTCATT--AT----GATCT-TAATAATAA-GATTGATG-AACCATTTGT--AAAAACTTCA-TTTCGAAGACAATCGATT--CCATCTGTTTCAT----ACATTAGC------------------TGAAA----AAAAATACTTGTTTGCATTCCTCTTTGTTAtagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : attcaacaaagcatgcatacatatccaaattctgagttcctatttctaattagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaataTTTGTAGGAACTCTTAGGTC-ATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGGTACATTATGCGATTTA---------AAGCATTCATTAAAT-AATGATTT-TAACAATTG-AAATGATGAAAACA--TTT--AAAAACATCA-ATTGGAAGACAATCGATT--T--ATTA----AT---GACTTTATCATCAGAATTTGGATTCAATAAATT-TGAAAATTATGTGTGC-CATATTTCTatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCTACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTTaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
gi|6 : TTTATTG-AACAAGTTTGATAC-AAGACTACAAACAACTCTACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAATGGTACCACCAATTCT-GAAAATAAATGCAGTATCT--TATTTTTTTCTTCTTTCGGGAGTGAACGAT-T-CT
gi|7 : gcaaATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAAT-GATTAA---AAA-----AT-T--GTCTTAT-ATACCTATA-TTTTCCAGTTTTATATATAATTTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACA--TGCTTTA--ATGTATCTTA-ATCTTTTCTTGTT-TTCCTAGTT-CATGTTATT-T---TGCTAGATAGACTATAAGTGCGT--TCTTCACAATA-CTGTcattgacatagttttatttccatat
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATTG-AATAAGTTTGTTAC-AAGACTAGAGAAGTATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAATAGTATCACAAATTCT-GAAAAAGAATGTA
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGT-GATTAA---AAT-----ATATTGACCTATTCACATCT----TTTGTAAGTTTTATATATAAAATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAG--CACACAA--ATATATC-TATA--TTCTT-TGTTGTTCCTATTttt
Alignments
lowQualScore : 1 1111 3333 2222222 11 2222 222222 333333 222 1 11 11 111 111 22222 11 1111 1111 11 11 11 111111 1 11 22222 3333333 11 1 11 1 222 1 111 111 444444444 2222 1 11 1 11 1 11 777777777777777777777777777777777777 22 444444
lowQualScore : 1 22 7 8 5 0 5 33 333 1 88888 8 1 99 1 0 66 7777 9 11 99 1 7777 44 8 8 9999999 00 9 333 4 2 3 3 4 0 1111 3 1 1 1 1 22 999999 000000 1 0 22 1 1 111 1 5 1 88 88 1 1 1 1 66 1 1 3 3 0 000 444 55555 44 33 1111 9999 0 3 1 11 1 4 0 2 33 7 11 3 11 4 3 8888 11 888888 0 1 00 7 77777 4444444 88 3 1 88 1 5 1 1 1 111 1 1 1 1 1 1 1 1 2 3 6 1 444 000 1 1 1 1 77 3 000000000 22 3 0000 0 6 00 1 0 33 3 33 1 0 2 33 2 444444444444444444444444444444444444 00 111111
lowQualScore : . .. . . . . . .. ... . ..... . . .. . . .. .... . .. .. . .... .. . . ....... .. . ... . . . . . . .... . . . . . .. ...... ...... . . .. . . ... . . . .. .. . . . . .. . . . . . ... ... ..... .. .. .... .... . . . .. . . . . .. . .. . .. . . .... .. ...... . . .. . ..... ....... .. . . .. . . . . . ... . . . . . . . . . . . . ... ... . . . . .. . ......... .. . .... . . .. . . .. . .. . . . .. . .................................... .. ......
lowQualScore : 0 00 3 0 7 4 0 44 111 4 66666 8 4 44 0 0 88 0000 0 66 00 2 2222 88 0 0 1111111 55 8 888 2 5 5 0 2 8 2222 2 0 0 0 0 00 555555 555555 0 7 00 0 0 555 0 5 0 55 00 0 0 0 0 00 4 0 2 8 6 000 000 00000 22 88 0000 5555 2 2 0 55 2 2 2 5 55 0 00 2 00 6 8 8888 00 666666 0 0 22 3 77777 0000000 33 3 0 55 0 5 0 0 0 555 0 0 0 0 0 0 0 0 0 7 7 0 000 888 4 4 4 0 00 2 000000000 55 2 2222 0 5 22 2 0 88 2 88 2 0 5 88 5 000000000000000000000000000000000000 77 000000
consensus : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTG-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
Reference ( family-1717 ) : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTN-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
gi|1 : CATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATTA-AATAAGTTTGATAC-AAGACTAGAAAATGCTCTACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAATTGTATCACCAATTTTT-AAAATACCTGCAGTAGC----ATTTTTTTCTTCTAACGGAAATGAATCAT-T-TTTGTCTTACAC--GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATT-GATTAA---AAA-----AAAT--GCCTGTT-ACACCT-TATTTTGCCAATTTTAAATATAAAATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAA--CACGTAA--ATGTACC-TA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGT---TGTTAAAGAGA--ATA--TGTGT--TCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAG---CATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTC-ATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGGTACAATATGCAACTTA---------AGTCATTCGTTAAATAAA-GAGTT-TAACAATTT-GATTGATG-GAT-ATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTAAGCA---------------AATGAAATATGAAAAATATTT--------TACCTTTTTGTCA
gi|10 : aCA----TAGTTCAATAATAGTATCACTA-TTCTATAAAATAAATGCAGTAAC---ATTTTTTTTCTTATTTCGGAAGTGAA-CAC-T-TTTATCTT--TT--ATAT---CTGTC----TG------GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCG-TAAAACCATta
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AATACTATAAAAAGCTCTACTAGCTGATTCTGTTAAAA
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA-------------GCTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCTCCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGTTCT-GTAT-ACC-ATTTTA-GAA
gi|14 : AGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTT--AGTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACATTGCAAT
gi|15 : TCTTCTTTCAGTAGTGAATATT-T-TTTGTCTT--GCTGATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|16 : GCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATTG-AACAAGTTCGATAT-AAGACTAAAAAAGGCACAATTGGCTGATTCTGTTAAAACATTAGC
gi|17 : atTATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATA-AAATGTTTAAAGAGATTAA---AA
gi|18 : AAATAAATGCAATAACATTTATTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT--tgaattaaatattgatcc
gi|19 : TCTATTG-AACAAGTTTGATAC-AAGACTGGAAAAAACTCTATTGGCTGATTCTGTT
gi|2 : ATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATA-GATTCAGGTAAATTATCAGAT--ACATG-T-ACCCCAATA-TTAGCTAATTCTATAT-CAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCA---T-TTTCTATCT-CTAT-T-TT-TCTATGTTTAAGAAA--A-----ACGTCATCTTCACACGATCTATTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTG---------------TCTCTT--TAATTAGATGGCACCCTTGGGTC-G---TTTTAAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGACAC-A-GTGATTTAACATTGAACAAACAGTCATTAAAC-AA-TGTCCATAA-AATTGTAACTGAAT-AATCATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTTAGCA---------------GAT
gi|3 : agTCAACAAAG--CATGCAT--ACATATC-CA-A--ATTCTGAG---TTCCTATTT-CTAA-T
gi|3 : atTTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGTAACATAATGCGACTTT---------ATAAATTCATT--AT----GATCT-TAATAATAA-GATTGATG-AACCATTTGT--AAAAACTTCA-TTTCGAAGACAATCGATT--CCATCTGTTTCAT----ACATTAGC------------------TGAAA----AAAAATACTTGT-TTGCATTCCTCTTTGTTAtagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : attcaacaaagcatgcatacatatccaaattctgagttcctatttctaattagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaataTTTGTAGGAACTCTTAGGTC-ATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGGTACATTATGCGATTTA---------AAGCATTCATTAAAT-AATGATTT-TAACAATTG-AAATGATGAAAACA--TTT--AAAAACATCA-ATTGGAAGACAATCGATT--T--ATTA----AT---GACTTTATCATCAGAATTTGGATTCAATAAATT-TGAAAATTATGTGTGC--CATATTTCTatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCTACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTTaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
gi|6 : TTTATTG-AACAAGTTTGATAC-AAGACTACAAACAACTCTACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAATGGTACCACCAATTCTG-AAAATAAATGCAGTATCT--TATTTTTTTCTTCTTTCGGGAGTGAACGAT-T-CT
gi|7 : gcaaATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAAT-GATTAA---AAA-----AT-T--GTCTTAT-ATACCTATA-TTTTCCAGTTTTATATATAATTTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACA--TGCTTTA--ATGTATCTTA-ATCTTTTCTTGTT-TTCCTAGTT-CATGTTATT-T---TGCTAGATAGACTATAAGTGCGT--TCTTCACAATA-CTGTcattgacatagttttatttccatat
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATTG-AATAAGTTTGTTAC-AAGACTAGAGAAGTATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAATAGTATCACAAATTCTG-AAAAAGAATGTA
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGT-GATTAA---AAT-----ATATTGACCTATTCACATCT----TTTGTAAGTTTTATATATAAAATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAG--CACACAA--ATATATC-TATA--TTCTT-TGTTGTTCCTATTttt
Alignments
lowQualScore : 1 1111 3333 2222222 11 2222 222222 333333 222 1 11 11 111 111 22222 11 1111 1111 11 11 11 111111 1 11 22222 3333333 11 1 11 1 222 1 111 111 444444444 2222 1 11 1 11 1 11 777777777777777777777777777777777777 22 444444
lowQualScore : 1 22 7 8 5 0 5 33 333 1 88888 8 1 99 1 0 66 7777 9 0 8 1 7777 44 8 8 9999999 00 9 333 4 2 3 3 4 0 1111 3 1 1 1 1 22 999999 000000 1 0 22 1 1 111 1 5 1 88 88 1 1 1 1 66 1 1 3 3 0 000 444 55555 44 33 1111 9999 0 3 1 11 1 4 0 2 33 7 11 3 11 4 3 8888 11 888888 0 1 00 7 77777 4444444 88 3 1 88 1 5 1 1 1 111 1 1 1 1 1 1 1 1 2 3 6 1 444 000 1 1 1 1 77 3 000000000 22 3 0000 0 6 00 1 0 33 3 33 1 0 2 33 2 444444444444444444444444444444444444 00 111111
lowQualScore : . .. . . . . . .. ... . ..... . . .. . . .. .... . . . . .... .. . . ....... .. . ... . . . . . . .... . . . . . .. ...... ...... . . .. . . ... . . . .. .. . . . . .. . . . . . ... ... ..... .. .. .... .... . . . .. . . . . .. . .. . .. . . .... .. ...... . . .. . ..... ....... .. . . .. . . . . . ... . . . . . . . . . . . . ... ... . . . . .. . ......... .. . .... . . .. . . .. . .. . . . .. . .................................... .. ......
lowQualScore : 0 00 3 0 7 4 0 44 111 4 66666 8 4 44 0 0 88 0000 0 8 0 2 2222 88 0 0 1111111 55 8 888 2 5 5 0 2 8 2222 2 0 0 0 0 00 555555 555555 0 7 00 0 0 555 0 5 0 55 00 0 0 0 0 00 4 0 2 8 6 000 000 00000 22 88 0000 5555 2 2 0 55 2 2 2 5 55 0 00 2 00 6 8 8888 00 666666 0 0 22 3 77777 0000000 33 3 0 55 0 5 0 0 0 555 0 0 0 0 0 0 0 0 0 7 7 0 000 888 4 4 4 0 00 2 000000000 55 2 2222 0 5 22 2 0 88 2 88 2 0 5 88 5 000000000000000000000000000000000000 77 000000
consensus : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTG-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
Reference ( family-1717 ) : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTG-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
gi|1 : CATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATTA-AATAAGTTTGATAC-AAGACTAGAAAATGCTCTACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAATTGTATCACCAATTTTT-AAAATACCTGCAGTAGC----ATTTTTTTCTTCTAACGGAAATGAATCAT-T-TTTGTCTTACAC--GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATT-GATTAA---AAA-----AAAT--GCCTGTT-ACACCT-TATTTTGCCAATTTTAAATATAAAATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAA--CACGTAA--ATGTACC-TA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGT---TGTTAAAGAGA--ATA--TGTGT--TCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAG---CATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTC-ATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGGTACAATATGCAACTTA---------AGTCATTCGTTAAATAAA-GAGTT-TAACAATTT-GATTGATG-GAT-ATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTAAGCA---------------AATGAAATATGAAAAATATTT--------TACCTTTTTGTCA
gi|10 : aCA----TAGTTCAATAATAGTATCACT-ATTCTATAAAATAAATGCAGTAAC---ATTTTTTTTCTTATTTCGGAAGTGAA-CAC-T-TTTATCTT--TT--ATAT---CTGTC----TG------GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCG-TAAAACCATta
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AATACTATAAAAAGCTCTACTAGCTGATTCTGTTAAAA
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA-------------GCTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCTCCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGTTCT-GTAT-ACCATTTTAG-AA
gi|14 : AGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTT--AGTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACATTGCAAT
gi|15 : TCTTCTTTCAGTAGTGAATATT-T-TTTGTCTT--GCTGATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|16 : GCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATTG-AACAAGTTCGATAT-AAGACTAAAAAAGGCACAATTGGCTGATTCTGTTAAAACATTAGC
gi|17 : atTATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATA-AAATGTTTAAAGAGATTAA---AA
gi|18 : AAATAAATGCAATAACATTTATTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT--tgaattaaatattgatcc
gi|19 : TCTATTG-AACAAGTTTGATAC-AAGACTGGAAAAAACTCTATTGGCTGATTCTGTT
gi|2 : ATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATA-GATTCAGGTAAATTATCAGAT--ACATG-T-ACCCCAATA-TTAGCTAATTCTATAT-CAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCA---T-TTTCTATCT-CTAT-T-TT-TCTATGTTTAAGAAA--A-----ACGTCATCTTCACACGATCTATTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTG---------------TCTCTT--TAATTAGATGGCACCCTTGGGTC-G---TTTTAAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGACAC-A-GTGATTTAACATTGAACAAACAGTCATTAAAC-AA-TGTCCATAA-AATTGTAACTGAAT-AATCATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTTAGCA---------------GAT
gi|3 : agTCAACAAAG--CATGCAT--ACATATC-CA-A--ATTCTGAG---TTCCTATTT-CTAA-T
gi|3 : atTTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGTAACATAATGCGACTTT---------ATAAATTCATT--AT----GATCT-TAATAATAA-GATTGATG-AACCATTTGT--AAAAACTTCA-TTTCGAAGACAATCGATT--CCATCTGTTTCAT----ACATTAGC------------------TGAAA----AAAAATACTTGT-TTGCATTCCTCTTTGTTAtagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : attcaacaaagcatgcatacatatccaaattctgagttcctatttctaattagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaataTTTGTAGGAACTCTTAGGTC-ATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGGTACATTATGCGATTTA---------AAGCATTCATTAAAT-AATGATTT-TAACAATTG-AAATGATGAAAACA--TTT--AAAAACATCA-ATTGGAAGACAATCGATT--T--ATTA----AT---GACTTTATCATCAGAATTTGGATTCAATAAATT-TGAAAATTATGTGTGC--CATATTTCTatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCTACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTTaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
gi|6 : TTTATTG-AACAAGTTTGATAC-AAGACTACAAACAACTCTACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAATGGTACCACCAATTCTG-AAAATAAATGCAGTATCT--TATTTTTTTCTTCTTTCGGGAGTGAACGAT-T-CT
gi|7 : gcaaATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAAT-GATTAA---AAA-----AT-T--GTCTTAT-ATACCTATA-TTTTCCAGTTTTATATATAATTTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACA--TGCTTTA--ATGTATCTTA-ATCTTTTCTTGTT-TTCCTAGTT-CATGTTATT-T---TGCTAGATAGACTATAAGTGCGT--TCTTCACAATA-CTGTcattgacatagttttatttccatat
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATTG-AATAAGTTTGTTAC-AAGACTAGAGAAGTATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAATAGTATCACAAATTCTG-AAAAAGAATGTA
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGT-GATTAA---AAT-----ATATTGACCTATTCACATCT----TTTGTAAGTTTTATATATAAAATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAG--CACACAA--ATATATC-TATA--TTCTT-TGTTGTTCCTATTttt
blockSeqs : G AA T T A T AT AAG A AGTAT C A CA C T CC TTAT A T A ATTT TA A A GCTGA TA A TTA T C T T C AAAA T T A T C AT . . A AC C T . C . A TA TG A A A G CA G G G C AGA GGT TTATC GA TG ATTC ATA A T CC C C G CA G AA T GG G T TTA TC TTGTT . T GT A TCTA CTATAAG CA T T . A . G G A TTA G A A A A G T A C G G T AGA TAA G T T T AT T ACATTGAAC AA A AAT A T GT C A TC T . C . G AC C AATGACTTTATCATCAGAATTTGGATTCA T GTTTG
blockSeqs : . . . . AA ATG A TGTA A A T A . GG . G . A TT TA . . TTA CA T TTT C C T T T . T C G T TT A T A T TA . . TA . TAT ATA A T AT T G G AA A . G . C T TAT . TGTTG . T T . T A . . T . T . A AT TTA C A A G TA T . TA A AA . C A T . CC T . T . G . C GTTTCATACATTAGC . GTGC
blockSeqs : . . . GG AGG A AGCA C T G C . GA . A . T A CG . . . . . . . . . . . . AA A A T T AT . . T . GT . . A CA T A . T . . T . T T CA . GAG . A A T G TA A T A A TT . . AG . . . . G A . AC . . A . . . . GCTTTAGCAG
blockSeqs : . . . CT AAA A . . T C . . . C . . TG G G G . GT . . A . T . G . AT A G T T T C
blockSeqs : . . AC CAA .
blockSeqs : . . AG AGT .
blockSeqs : . G .
blockSeqCons : TA**
originalCons : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTG-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
finalCons : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTG-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATCTA--A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
Alignments
lowQualScore : 1 1111 3333 2222222 11 2222 222222 333333 222 1 11 11 111 111 22222 11 1111 1111 11 11 11 111111 1 11 22222 3333333 11 1 11 1 222 1 111 111 444444444 2222 1 11 1 11 1 11 777777777777777777777777777777777777 22 444444
lowQualScore : 1 22 7 8 5 0 5 33 333 1 88888 8 1 99 1 0 66 7777 9 0 8 1 7777 44 8 8 9999999 00 9 333 4 2 3 3 4 0 1111 3 1 1 1 1 22 999999 000000 1 0 22 1 1 111 1 5 1 88 88 1 1 1 1 66 1 1 3 3 0 000 444 55555 44 33 1111 9999 0 3 1 11 1 4 0 2 33 7 11 3 11 4 3 8888 11 888888 0 1 00 7 77777 4444444 88 3 1 88 1 5 1 1 1 111 1 1 1 1 1 1 1 1 2 3 6 1 444 000 1 1 1 1 77 3 000000000 22 3 0000 0 6 00 1 0 33 3 33 1 0 2 33 2 444444444444444444444444444444444444 00 111111
lowQualScore : . .. . . . . . .. ... . ..... . . .. . . .. .... . . . . .... .. . . ....... .. . ... . . . . . . .... . . . . . .. ...... ...... . . .. . . ... . . . .. .. . . . . .. . . . . . ... ... ..... .. .. .... .... . . . .. . . . . .. . .. . .. . . .... .. ...... . . .. . ..... ....... .. . . .. . . . . . ... . . . . . . . . . . . . ... ... . . . . .. . ......... .. . .... . . .. . . .. . .. . . . .. . .................................... .. ......
lowQualScore : 0 00 3 0 7 4 0 44 111 4 66666 8 4 44 0 0 88 0000 0 8 0 2 2222 88 0 0 1111111 55 8 888 2 5 5 0 2 8 2222 2 0 0 0 0 00 555555 555555 0 7 00 0 0 555 0 5 0 55 00 0 0 0 0 00 4 0 2 8 6 000 000 00000 22 88 0000 5555 2 2 0 55 2 2 2 5 55 0 00 2 00 6 8 8888 00 666666 0 0 22 3 77777 0000000 33 3 0 55 0 5 0 0 0 555 0 0 0 0 0 0 0 0 0 7 7 0 000 888 4 4 4 0 00 2 000000000 55 2 2222 0 5 22 2 0 88 2 88 2 0 5 88 5 000000000000000000000000000000000000 77 000000
consensus : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTG-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
Reference ( family-1717 ) : NCATTTATGTACGCCTAAAAAGAATTTNATNNCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAGGTACTATTCTCGCATCATAAATTTTACTGTATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AAGACTAGAAAANGCTCTACCGGCTGATTCTGTTAAAACATTAGCAGTTTCAGTA-AAATNTAGATATTC-ATTTAAANCC-ACACCAAGATATTTATAGTTATCGCA----TATTTCAATAATAGTATCACCAATTCTG-AAAATAAATGCAGTAAC---TATTTTTTTCTTCTTTCGGAAGTGAATNAT-T-TTTGTCTT--NC--GTATTAACTCTCATTTTGTTTACCGAACACCACATATTTAGATACGCTAACATACACTGTAGATGCTCTTCATT----TGGGGCCATTAAAACTATATCATCAGCGAANAGTAACACACTGACNGAAAGTTCANGNTTTAANNTGACTCCTTTGTCAAGACTTTTTATTTCGAATGCAANATCGTTGATAAAAATNNAANAAAAGNCGTTTGNGAGGTAACGTCCCCTTGCTTNACACCTAACTTGACANANATCAAGNAAATCTGTNTATTTACCATTTACGTCAACGGTGGCTTTACANTCGTCATATAAACTTTTAANT-GATTAA---AAA-----ANAT--GCCTGTT-ACACCTATA-TTTGCCAGTTTTATATATAANATATCTCTATTTACGCAATCAAAAGCTTTTGCCATATCAACAAAG--CGCGTAA--ACGTATC-TA-A--TTTTCGTGTT-TTCCTATTT-CNAG-TATT-T---TGTTAAAGAGA--ATA--TGCGT--TCTTCACAAGA-CTGTTTCGTCNGAAACCATATTGTNCATCNTCNANAGTTACGTCATNTGNTTNTAGATATTTNACCAANCGCTNATTNAGTATATTTGTATANAGTTTACATTCCGCAGATATAAGACTAATCTCGTGATAATTTGNAGGAACTCTTGGGTC-GTTTTTTTAAGTTTTTCGGTATAGGTTTTATAATGGATTTCGTCCATAAAGACGGTACANTATGCGACTTA---------AAACATTCATTAAAT-AA-GATCT-TAACAATTG-GATTGATG-AATCATTTTT--AAAAACTTCA-TTTGGAAGGCAATCGATT--CCAACTA----AT---GGCTTTAGCA---------------AATGAAAT-TGAAAAATATTTGT-C--CATACCTCTTTGTCA
gi|1 : CATTTATGTACGCCTAAAAAGAATTTTATTTCGCGATTATGTAGTGTGTCAGTTTTAGAATAACTTTTACATCCCCATACCGAAAATGTATAATCCATTATAGGCACTATTCTTGCATCATTAATTTTACTGTATGTAGCAAACATT-AAGTCACTTTTATTA-AATAAGTTTGATAC-AAGACTAGAAAATGCTCTACCAGCTGATTCCGTTAAAACATTAGCAGTTTCATTA-AAATGTAGATATTT-ATTTAAAACC-ACACCAAGATATTTATAGTTATCACA----TATTTCAATAATTGTATCACCAATTTTT-AAAATACCTGCAGTAGC----ATTTTTTTCTTCTAACGGAAATGAATCAT-T-TTTGTCTTACAC--GTATTTACTCTCATTTTGTTTACTGAACACCACAAATTGAGATATTCTAACATCCACTGTAGATGCTCTTCGTT----TAGGGCTATATAAACTATATCATCAGCAAAAAGTAATATACTGACTGAAAGTTCAGAGTTTAATATGACTCCTTTGTCAAGACTTTTTATTTCAAATGCAAGATCGTTGATAAAAATTGAAAAAAAAGCGTTTGAGAAGTAACATCCCCTTGCTTTACACC--ACT--ACATATATCAAGTAAATCTGTATATTTACCATTTACATCAATGGTTGCTTTTCATTCTTCATATAAACTTTTAATT-GATTAA---AAA-----AAAT--GCCTGTT-ACACCT-TATTTTGCCAATTTTAAATATAAAATATTTCTATTAATACAATAAAAAGCTTTTGCCATATCAACAAAA--CACGTAA--ATGTACC-TA-A--TTTTTGTGTT-TTCCTATTTCCAAG-TATTGT---TGTTAAAGAGA--ATA--TGTGT--TCTTCCCAAGA-CTGTTTTGTCAAAAACCATATTGTTCATCTTCTATAG---CATCATTTGTTTCTAGATATTTTACCAATCGTTTATTAAGAATATTTGTATAGAGTTTACATTCCGTAGATATAAGACTAATCTCACGATAATTTGAAGGAACTCTTGGGTC-ATTTTTTTGTGTTTTTCGGTATAGGTTTTATAATAGATTTCGACCATAAAGATGGTACAATATGCAACTTA---------AGTCATTCGTTAAATAAA-GAGTT-TAACAATTT-GATTGATG-GAT-ATTTTTAAAAAAACTTCATTTTGGAAGGCAATCGATT--CCAACTA----ATAAAAGCCTAAGCA---------------AATGAAATATGAAAAATATTT--------TACCTTTTTGTCA
gi|10 : aCA----TAGTTCAATAATAGTATCACT-ATTCTATAAAATAAATGCAGTAAC---ATTTTTTTTCTTATTTCGGAAGTGAA-CAC-T-TTTATCTT--TT--ATAT---CTGTC----TG------GAACACCACATATTTAGATACGCTGACAAGTACTGTAGATGCTCCTCATTAAAATAGAGTCG-TAAAACCATta
gi|11 : TGTTAGGTTTAGAATAACGTTTGCATCCCCATACCGAAGATGCATAGTCCATTATAAGTATTATTCTCGTATCCTAAGTTTTACTATATGTAGAAAACATT-AAGTCACTTTTATTG-AACAAGTTTGATAC-AATACTATAAAAAGCTCTACTAGCTGATTCTGTTAAAA
gi|12 : ATTAACTCTCATTTTGTTAACTGAACACCA-------------GCTAAAATACACTGTAAATGCTCTTCATT----TGGGGCTATTAAAACTATATCATCAGTGAATAGTAACACACTGACAGAAAGTTCATGCTTTAAATTGACTCTT------AGAT------TTTCGAATACATAACTATTGGTA
gi|13 : ACAAATTCGAAACTAAGGAT-GAAAATGCTCTCCCAGCACGTTCACTTAGA-CATTGACCGTTTCTGTA-AAATCTGAAAACTT-ATTGAAACCA-ATACCTAGAGACTTGTAGTTATCCCATTATTACTTCAGTTCT-GTAT-ACCATTTTAG-AA
gi|14 : AGTATATTTGTATTAAGTTTACATACCGCAGATATAAGACTAACCCCGTGATAATTTGTAGGAACTCTTGTGCCAGATTTTT--AGTTTTTCGGCATAGGTTTTATAATGGATTTCATCCATATAGACATTGCAAT
gi|15 : TCTTCTTTCAGTAGTGAATATT-T-TTTGTCTT--GCTGATATCAACTCTCTTTTTGTTTACCGAACACCACATATTTAGATATGGTAACATATACTGTAAATACTCTTTATT----TGGGGCCATTAAAACTATATC
gi|16 : GCATCATAAATTTTACTGTATGTAGAAAAAATTTAAGTCGCTTTTATTG-AACAAGTTCGATAT-AAGACTAAAAAAGGCACAATTGGCTGATTCTGTTAAAACATTAGC
gi|17 : atTATTTATTATTTACGTCAACAGTGGCTTTACAGACGTCATA-AAATGTTTAAAGAGATTAA---AA
gi|18 : AAATAAATGCAATAACATTTATTTTTTTCTTATTCCAGAAGTGAATAATATATTTGTCTT--tgaattaaatattgatcc
gi|19 : TCTATTG-AACAAGTTTGATAC-AAGACTGGAAAAAACTCTATTGGCTGATTCTGTT
gi|2 : ATGCAACGTCATTTATAAAAATACAACAAAAGTCG---GCGAGATA-CGTCCCCTTGTTTAACACCTAATTTGATAAAAAAAAAAAAAATATGTGAAACTGCCATTAACGTTAATTGCAGCTGAACATTTATCGTACAAAGTCTTAATA-GATTCAGGTAAATTATCAGAT--ACATG-T-ACCCCAATA-TTAGCTAATTCTATAT-CAATAGATCCCTATTCACCCGACCAAATACTTTAGCCATGTCGAAAAAGAAGGTTTAAGGGGGTA----G-A--TTATCA---T-TTTCTATCT-CTAT-T-TT-TCTATGTTTAAGAAA--A-----ACGTCATCTTCACACGATCTATTTCATCTGAAACC--ATTGTACA-CGTCGAAAGTTATGTCATGTAATTATAAATATTTAACCAAACGCTGATTTATTATGTTAGTATATAATTTGCCTTGTG---------------TCTCTT--TAATTAGATGGCACCCTTGGGTC-G---TTTTAAATATTTTGGGATTGGTTTGATAATCGATTTCGACGTTAAAGACGGGACAC-A-GTGATTTAACATTGAACAAACAGTCATTAAAC-AA-TGTCCATAA-AATTGTAACTGAAT-AATCATTTTT--AGATACCTCA-TTTGGTAAGCAATT--TTACCCAACT-----------GCTTTAGCA---------------GAT
gi|3 : agTCAACAAAG--CATGCAT--ACATATC-CA-A--ATTCTGAG---TTCCTATTT-CTAA-T
gi|3 : atTTTTTTTTAGTTTTTCGGTAAAGGTTTTATAATAGATTCCGTCCATAAAGACGTAACATAATGCGACTTT---------ATAAATTCATT--AT----GATCT-TAATAATAA-GATTGATG-AACCATTTGT--AAAAACTTCA-TTTCGAAGACAATCGATT--CCATCTGTTTCAT----ACATTAGC------------------TGAAA----AAAAATACTTGT-TTGCATTCCTCTTTGTTAtagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaatattttttttagtttttcggtaaaggttttataatagattccgtccataaagacgtaacataatgcgactttataaattcattatgatcttaataataagattgatgaaccatttgtaaaaacttcatttcgaagacaatcgattccatctgtttcatacattagctgaaaaaaaatacttgtttgcattcctctttgttaatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|4 : attcaacaaagcatgcatacatatccaaattctgagttcctatttctaattagtgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcgaataTTTGTAGGAACTCTTAGGTC-ATTTTTTTA-GTTATTCGGTACAGGTTTTATAATGAATTTTGTCCATATAGACGGTACATTATGCGATTTA---------AAGCATTCATTAAAT-AATGATTT-TAACAATTG-AAATGATGAAAACA--TTT--AAAAACATCA-ATTGGAAGACAATCGATT--T--ATTA----AT---GACTTTATCATCAGAATTTGGATTCAATAAATT-TGAAAATTATGTGTGC--CATATTTCTatatagattcgctgagatttcatttatttttaaataaataagcatcggtatcttaactgaagaaattgttttcatctataacggtatcatcagaatttgggttcaa
gi|5 : CATTTATGTACATCTAAAAAGAATTTGATAACACGATTATATAGTATGTCAATTTTAGAA---CTTTTGCATCCCCATACCGCAAATGCATAGTCGATTATAAGTATTATTCTTGCATCATAAATTTTACTGTCAATAGAAAACATT-AAGTCATAATTATTGAAAAAAGTTTGA-AC-TAGACTCTTAA---CTCTACTGGGTGATTCTGTTTAAACATTAGCAGTTTCAGTATAAAT-TAGAAATTCAATTTaaaataatatcattttcttgaagaaatgtcatcgcttaaaaggatttcatccgtataactggtca
gi|6 : TTTATTG-AACAAGTTTGATAC-AAGACTACAAACAACTCTACCGACTGTTTTTGTTAAAACATTAGCAGTTTCAGCA-AAATATTGATATTG-ATTTAAAACC-ACACCAAGATATGTATAATTATGGCA----TATTTCAATAATGGTACCACCAATTCTG-AAAATAAATGCAGTATCT--TATTTTTTTCTTCTTTCGGGAGTGAACGAT-T-CT
gi|7 : gcaaATTTAGCATTTACGACAAAAGTAGATTTACAATTTTCATATAATCTTTGAAAT-GATTAA---AAA-----AT-T--GTCTTAT-ATACCTATA-TTTTCCAGTTTTATATATAATTTATATATATTTACGCAATCAAAACCTTTT-CAATATCAACAACA--TGCTTTA--ATGTATCTTA-ATCTTTTCTTGTT-TTCCTAGTT-CATGTTATT-T---TGCTAGATAGACTATAAGTGCGT--TCTTCACAATA-CTGTcattgacatagttttatttccatat
gi|8 : AAGATACATGGTCCATTATAGGTACTATTCTCACATCATAGATTTGACTGTATATAGAAAACATT-AAGTCATTTTTATTG-AATAAGTTTGTTAC-AAGACTAGAGAAGTATAAACTGGCTGATTCTG--------TTAGCAGTTCT-----AAATCTAGTTATTC-ATACAAACCCTACACCAAGATATTTATAGTTATGACA----TATTTCAATAATAGTATCACAAATTCTG-AAAAAGAATGTA
gi|9 : ATCAAGGCAATCTGTTTATTTACCATATACATCAATGGTGGTTTTACGGCCGTCATATAAACGTTTAAGT-GATTAA---AAT-----ATATTGACCTATTCACATCT----TTTGTAAGTTTTATATATAAAATATCACTATTTACATAATCTAAAGCTTTTGCT-T----ACAAAG--CACACAA--ATATATC-TATA--TTCTT-TGTTGTTCCTATTttt