lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111111111111111111111111111111111111111111111111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111
lowQualScore : 333 22 1 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1 1 1 22 4444444 1 222 1 4 1 1 11 22 555555555555555555555555555555555555555555555555555555555555555555 1 1 1 2222 1 1 44 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 33 1 1111 1 1 1 1 11 333 444444444 00000000000000000000000000000000000000000000000 111 1 1 1 4 1 1 1 4444444 1111 1111 1111 111 11 222222 1 111 444444444444 1 111 1 1111 4444444444444444444444444 44444 1 55555555555555555555 2 222 1 5555555555555 222 1 1 1 22 1
lowQualScore : 6 888 11 5 6 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 7 7 5 33 9999999 7 6 222 7 6 6 0 5 5 6 22 6 33 6 666666666666666666666666666666666666666666666666666666666666666666 6 7 6 7 6 7 0000 7 7 66 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 5 6 22 6 5 6 4 7777 0 7 7 1 88 4 333 333333333 66666666666666666666666666666666666666666666666 888 5 7 6 5 0 9 3 0 6 0 11 0 99 2 5 5 0000000 4 8888 8 1 6 9999 1111 6 3 3 99 3 99 777 11 1 4 0 333333 8 0 555 5 8 555555555555 3 4 2 0 0 6 444 1 0 55 8 55 7777 33 8888888888888888888888888 4 77 44444 6 7 44444444444444444444 4 7 777 3 0 3 8 7 3 6 0000000000000 888 6 5 5 6 5 33 6 7
lowQualScore : . ... .. . . .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. . . . . .. ....... . . ... . . . . . . . .. . .. . .................................................................. . . . . . . .... . . .. ............................................................................................................................................................................................ . . . .. . . . . .... . . . . .. . ... ......... ............................................... ... . . . . . . . . . . .. . .. . . . ....... . .... . . . .... .... . . . .. . .. ... .. . . . ...... . . ... . . ............ . . . . . . ... . . .. . .. .... .. ......................... . .. ..... . . .................... . . ... . . . . . . . ............. ... . . . . . .. . .
lowQualScore : 0 000 00 0 0 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 0 0 0 0 00 0000000 0 0 000 0 0 0 0 0 0 0 00 0 00 0 000000000000000000000000000000000000000000000000000000000000000000 0 0 0 0 0 0 0000 0 0 00 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0 00 0 0 0 0 0000 5 0 0 5 00 0 555 555555555 00000000000000000000000000000000000000000000000 000 0 0 0 0 0 0 3 7 0 2 00 0 00 5 0 0 2222222 2 2222 0 0 7 0000 8888 7 0 5 22 3 22 666 00 4 0 8 000000 0 0 444 0 0 000000000000 2 5 5 2 0 0 000 8 8 66 0 88 8888 55 2222222222222222222222222 7 77 00000 0 0 00000000000000000000 0 5 000 0 0 2 2 3 7 7 7777777777777 000 0 0 0 0 0 00 0 0
consensus : NNATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCAC-TTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCATT---TCAAAAAGAAGATTAGACTTAGAA-TGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTAGGTGATATTAACGAAGACCATT-TAAATACTAA-CA----ATAATCGTCTTAGAAATACTATACTTA---TTAA---CAATTTGACAAATGTCATTACAGAACTAACCAGAGCAACTGAAACTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATTTAAATGTCTCAATTCTGGAACTTTAGATGTTCCGAATAGAATAAGCGACCATAAAGCTAC--TTATATTTATATC-CCATTTTCTCTGT-----TTACACCTCCTGCNTATAACTGCGAAAAGTNTNGTTNTACATAAAAGGCGAATTTCGATCT--T--A-AATAAAAT----GA-ATNATAA-C-----TGATTGGGAC-TGNT-TGNTA----AAC-TGNTNTATT--N------ATGAA-GCTTGTGACGTTTTTACAT-AAA-TATTTAT--A-G--TGGCCGAAA-GTGTATTCCGTCTAA--ANC-GTAACTATCCGNCNNANTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCCC--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCNAATTTTGNTAT---T---TC------AGA-----AAATA--CGAT--AT------ATC--TGANATTNTAA--CA-N--TGT--TAATANAGATAAA-C-CGTGACCAT-ACTCTATAAGTCACANNACGCTTGAAGGTGTATACAGAACCCATNGTAATTCTAAACCTTT-GCCA-TACT--T-TTTAAC-CGNTCA--TCT-GATGAAG---GNATTTA-CCCGATGTTTGGAAANTAGC---GAACGT-N--GCGCCANTATATCAAA-AAAGGTGA--CAAGNCTATG--GCTNCTAATTACAGACCAAT-TTCNCT-CTTA-GC-TNTTGCGGCAAGNTANTNGAAAGGNTCGTNTNCAAGCATATGTNCATATACTNTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATATT----ATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAAA---CAAACGTGAACAAAGAGTATTTATATGTAAT----AGTATT---TCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTATTAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT---TGTTAAGTATTACATGAATA-GTTGCA----GATGATACATCTCTTGCTTTTACATCTTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATC-TGATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTT--TTAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAATCATGATGGAAAATGCATCAACACAT----AAATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACNGGNTTGACNCGTTCTGTNTCTATTCAAANATGTTGTACACNNGAANTCGGGTGGTTACCGTCTATCGTCGGAGAGAANAAAAATATCAAAAATATATTA--TTGCATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCGACTTAGAAATAGTAA-AATTAT-ATTACTCCATATTGTAGAACAGAGATAAT-GCGAAANTCGTGCATTCCGTCTNNCA--TTTCTTTT---CGGAAT-CAGCTTGA-TGACAATATTAAAG-CAGC-GCNTTCACTTT--CAATCTTTAAAAATACAT--TACGCCATAATA--CTAAATNTAAAATAC------CAC-CATATTAN--TCTCA-TGGCAA-ACGATGTTTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGAT---CTATGTAGAAATCATCTGCATCC-ATCACCGTTCTGCGAG-TGTCAA--GA---GGTTAT-----AGAAGANGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAANGGCTTGATACGCCNTTTTCCNNNCNACACG-AGCATTACATCCGTTAGATATTAATNTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
Reference ( gi|1 ) : CGATTTTACACTGTAATATTAGAAGTATTAGAAATAAGATAATTTT--TTTTGTTAAAAAC--CTTT-TAGACCATGATATTCTTTGTTTTACTGAAACGCACCTTGA-TAATCAGATACCAAATGACTCTTTA-ATACTTAATGAAAACTTTGATATATTTTACAGAAATGAACGTTCTAATCATGGAGGGGGGATACTT--ATTTATGTTTCAAATAGTGTTATTCATTCCAGGCGAA-AT--GCCTTGGAAATATTTTGTAAC-GAATCAATTTGGATAAATGTCAAAATCA-----AAAATGAAAATATACTATTAGGTG-TGTTCTATA--GT-CCCAAAAC-CGCAGATACCACGTTTTTCGA-TAACCTGAATGTAAATATTGAGAAGGCCTATGAAACTTCTCAAAA--TATCGTCCTCCTAGGTGATTATAATGAAAAC-ATTCTAAA--CTCATCATTCCATAACC----T-GAAAGAC-ATA-TTAACCTTAAACTCACTT--ATCAATATTATAAATGAACCCACCAGA-------AATCTAGCCAT----TCT--T-GATCCAATCATTGTACCATATG-------ATATGCCA------------TAGAAGTTCCAGCTAACATAAGTGAACATAAAGCAACATTTATA---ATATTACCA--TTCCC-GTACGAGCTAAA--TTCTACATATAA--AAGACAAATATGGTTGTACA-ACAAAGCAAATTTTAATCTCCTTTATGATAAAGT---TGA-ATCATA--------TGATTGGGAC-TGCT-TAATA----AAC-TGCTCTATT--A------ATGAA-GCATGCGACAAGTTTACAT-ATA-TATTTATTGAAA--TGGTTAAAACTTGCATACCATCTAA--ATTAATAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTC------AGAAGTTGGAAAATATCTA--AAAATAAGAGATAGACTAAAG---AAAATTGCAAT-TAAATCAGGTAAGG--CAAATGATGGGTGTAGATATAA-CAATCTAGAAACAAAGTAAATAACATAAAAAAACAAGCTAAAGAAAACTTTTTTAATAATCTGAAAATTTCATTAAACGATTTACAG---TCGAA----CGAT---AAAACAGGTTT-CTGGAAAATCATTAGACATTTTGTT---AAAAATTCAGACTCTGCATCCACATTTCAACCTCTTTGTAAAACAAATATAAATGGCACT-------AAATATTCTCTTATTTCTTG-CAAAGAAAAGGCTGAGCACCTTAATGACTATTTTACATCTATATCGAC--CCAA-GACGAGATAAATGTCCAACGAC--CAGTATCTACAC-CAAAAACAGATGAGAGTCTTACAAATTTTGTTAT---T---TC------AGA-----AAATA--CGAT--AT------ATC--TGACATTCTAA-ACA-C--TGT--TAATATAAATAAAGCATGTGGCCATGACTCTATAAGCCATAAGATGTTTAAAGGGGTA-ACATAACC-ATA-----TCTAAACATTTAGCCA-TACT--T-TTTAAC-CGCTC---TCTGGATGAAG---GGATTTATCCTGACGTTTGGAAGATAGC---AAATGT-T--ACACCAATATAT--AA-AAAGGTGA--CAAGCCTATA--GCTTCAAACTATAGACCAGT-TTCTTTACTTA-GC-TGTTGTGGTAAGATATTTGAAAGAATCATTTTTAAACACATGTACA---ACTTT-CTTCTTACAAATAAATT-ATTGTATAAATATCAATCAGGATTTCTACCAAACCATTCAACAACATTT--CAG---TTAGTATACATCTTTCATTATATCTG-CAAAACCTTTGATAGC----AAACAATTTTCATGTATAGTATTCTGTGACATATCGAAGGCTTTTGATCGTGTCTGGCATCAGGGGCTCTTATTCAAACTTAATG-AAATTGGCATTTATGGTACACTACTTAGTTGGTTATCAA--GTTATCTGAAACACAGATCTCAAC-----GTGTTGTTATACAATCATCAGAATCCACTCTTAAGTATATAAA----------TGCAGGTGTTCCCCAAGGATCTGTCCTTGGACCTCTATTATTTCTAATATATGTTAACGATATCGCTG---ATTCACTATTAAGT-TTA----ACTAGGTTGTATGAGGACGATA-GTTCCTTA-TATTAT-TCTGCAACTTCTACCCAGGATCTTGAAGGTATTATAAACTATGATCTTGAT-ATTATATCTAAATGGTCTAAACAATGGATGGTGAACTTTAAT-CCGAACAAACTGAAGCTATGTTCTTCTCTTTAA--GAAAACCTGACAGACTACCTAATGTTA-TATTTGAAAATACTTATTA--CAATTTGTTCATTCTCATAAACATCTTGGTGTTACTTTAAGCCATGATGGTAATTG-GTCAACACATATTGAAAGCATATTACTT--TCTGCTTCCAAGACAATACACATTATGAGACACTTAAAATTCACTATTGGAAGAAACGCA-----CTCAATCAAATGTATA-A-----ATCGTATGTGCGTCCAATTCTAGAGTATTCTTCATTGGTCTGGGATGGTTG--CACA--GTGCACTTCACAGATTCAA--TAGAAAAACTACAAAACGAAGCAGCACGAATTGTCACAGGACTTACCCGATCAGTATCTATTCAAAAA--CTGTATA-ATGAATGTGGATGGGAACCA-CT-TAA--AAAGAGAAGAGAAAT-TTAAAA--ATATTACCTTATGTATAATGTATACCATTCAAATATTCCAAGTTATATAAATGATCTTTTCCCACCTCTATTTGGTGCAACAACTGAATACCCACTAAGAAACAGGAATAACTAT-ACTACTCCATACTGTAGAACAGAGATAAT-GCGAAAGTCATGCATTCCCTCTTCTA--TTTCTCTT---TGGAAT-CAGCTTGA-TGAAAAAATTAGAG-CAGC-GCATTCACTTT--CAATCTTTAAAAATACAT--TATGCCAAAATA--CTAAATTTAAAATAC------CAC-CATAGTAT--TCTCA-TGGCAA-A-GATGTGTC-TCAGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATTTAAATGCCGAT---CTTTGTAGAAATCATCTGCACCC-ATTACCTTTCTGTGAG-TGTCAA--GA---GGTCAT-----AGAAGATGCTGAACACTACTTCTTTAAATGTCCTAAATAAAGCAATCAAAGAC-T----CGTCTTGTTTCAAACAACACG-AGCATTACATCCATTAAATATTAATCTACTACTGAGTGGAAGTGAAACTATATCTATAGCAGATAAC-TTACTATTGTAGATGCTGTCCATAACTTTATTAAAGATACCCATAGTTTT
gi|2 : ATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCAC-TTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCATT---TCAAAAAGAAGATTAGACTTAGAA-TGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTAGGTGATATTAACGAAGACCATT-TAAATACTAA-CA----ATAATCGTCTTAGAAATACTATACTTA---TTAA---CAATTTGACAAATGTCATTACAGAACTAACCAGAGCAACTGAAACTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATTTAAATGTCTCAATTCTGGAACTTTAGATGTTCCGAATAGAATAAGCGACCATAAAGCTAC--TTATATTTATATC-CCATTTTCTCTGT-----TTACACCTCCTGCTT-TAACTAAAA-AAGTTTGGTTTTATATAAGAGGTGA----TAAT---------GACAAAATGAATGACATGATAACTTACTTTGATTGGGA---GTT-TATT---------TCCTATATTTCC------ATAAACGCA-GAAACAATCTTAGAT-------TTTAT---------GCAAAAA--TGTATTCCCTCCAATGAT--ATAACCATCAGACCTACTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCCC--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCTAATATTATTATAACTAAGTCTAAAAGAGA-----AGATA--CGATTAAT------ATCCTTGACA--CTAACACATC--TGT--TAGGAATGATAAA------------------ATAAGTCACAAA--GTTTGAAG---TATACAGAAT--ATAGTAATTCTAAACCTCTTG----TACTGTTATTTAAT-AGATCA--TTT--ATCAAATGTGAATTT--CCAGATTTATGGAAATCAGCCCTA---GT-A--ATGCCACTTT-TCAAA-AAAGGTAAAACAAACCTG----GCGTCTAATTATCGACCAAT-TTCACT-CTTAAGC-TGTATTGGCAAGTTAATGGAAAGAATTGTGTACAAACATATATATATATACTTTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATATT----ATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAAA---CAAACGTGAACAAAGAGTATTTATATGTAAT----AGTATT---TCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTATTAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT---TGTTAAGTATTACATGAATA-GTTGCA----GATGATACATCTCTTGCTTTTACATCTTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATC-TGATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTT--TTAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAATCATGATGGAAAATGCATCAACACAT----AAATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACTGGTTTGACGCGTTCTGTTTCTAT--AAATATGTTATACA-CTGAAATCGGATGGTTATCG-CTATCA--GAA-AGAATA-AAATATCAAAAATATATTA--TTGCATATAA
gi|12 : ctACATATAA--GCGAAAAGTATTGTTGTACA-AAAGGGCAAATTTTGATCT--TTTA-AATAGAA-----AA-ATAAT---------TGATACTGAC-TGGTCTGATATTTTAACATGATGTAGT--AATATAGATGAA-GCTTGTGACGTTTTTACTTCAAACTATTTA--GATA--TGGCTGAAGAATGTATTCCAAATAA--ACTTGTAATTATTCATCAAAATGAacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaagaacacaactaattgcaaattcgtttattccgtcatgcgtatctatttggaatacacttcccgagtacatttgtaactcagagactttatcaatttttaaaactcatataacaaacatttattttaaaacgcaaatggtaccatcgtataatctaactggtagtcgaatttcatcagtttcccacgatcgtttgagaaacggatgtagtcatctcaagtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaaaaagacgccgagcgctactttatgcaatgttctatatatactgatgaacgacttcgcctttttcgttccacacgccgttttcatcccttaagta
gi|16 : AAAGCAAATTTCGACTTGCTAAATAATAAAAT-------ATCAGAAAC-----TGATTGGAGCATGC--TGCTA----AAC-GGTACAGTT--G------TTGAG-GCTTGTGAAATGTTCTCAA-AAA-TATTTAT--AAGTTTAGTCAAAATGTGTATTCCGTCTAA--AACAATAACTGTCCt
gi|12 : CAAATTTTGATCT---T---TT------AAATAGAAAAATAATTGAT--ACTGACTGGTC--TGATATTTTAA--CA-TGATGTAGTAATATAGATGAAGCTTGTGAC
gi|25 : acatataagcgaaaagtattgttgtacaaaagggTTTGCTAT---T---TC------AGA-----AAAT----GAT--AT------ATC--TGAAATTATAA-CCA-A--ACT--TGATACATATAAGCCACGTGATCATTACTCTATAAGTCAgtttttacttcaaactatttagatatggctgaagaatgtattccaaataaacttgtaattattcatcaaaatgat
gi|15 : CATGACTCTATAAGCCATACTACGCTTAAAGGTGTA-ACAAAACCCATC-----TCTAAACCTTTAGCCA-TATT--T-TTTAAC-CGCCC---TCTTAATGAAG---GGATTTA----------TGCAAAATAGC---AAATGT-TTCACATCTATATA---AA-AAAGGTGA--CAAAGCTATA--GTTTCAAACTAAAAAT--AT-TTTTTT
gi|8 : CATTT--CCACTA-T--T-TATAACATGGTCAGTTCTGGATG--G---GTGTGTA-CCTGATGATTGGCATCTTGC---CAATGT-A--GCACCAGTAT-TCAAA-AAAGGTGA--GAAG--TATGATGCTGCCAATAACAGACCAGTCTCCCTCACTT--GC-ATTTGCTGCAAGct
gi|17 : aagctgctgaccctgacactatcagtacacactccaagaatgtaggaaaaagatcagcccatTATCCCAAAGTTTGGAAGGAAGC---GTTCGTAT--GTGCTATT-TAC--AAGAAAGGAGA--CCCGTCTTTG--GCTAATAATTACAGACCTAT-TTCACTTCTAA-GTGTATTG-AACAAAGTATTTGAAAGGCTCGTTTTTAAGCATATGTTCA---ATTAT-TTTtccctggagcacactat
gi|24 : TTACAGGATTAACTCGTTCTGTGTCTATTCAAAAA--TTGTATACAGAAAT-CGGGTGG---CTGTCT-TTGTCAGAGAGAAGAAAA
gi|13 : TACCGACTTAGAAATAGTAA-AAATATTGTTATTCCCAATTGTAGAACAGATGTTAT-GAAAAATGCATGTATTCCATC----AGGTTTCTTTTATACGGAAT-CAACTAGA-AGACAGTGTAAGAT-CATCTGCATCC-TTTT--CAATTGTCAA----ACATGATATGC----GTAGTCTAAATGGAAA----------CACACATATTAC--T-TTA-TGtat
gi|6 : AATTAT-ACTACTCCATATTGTAAAATAGAGATAAT-GAGAAAGTTTTGCATTCCCTCTACCA--TTTCTCTT---TGAAAT-CAGCTTGA-TGACAATATTAATG-CAGC-GCCTTCAC-TT--CAATCTTTAAAGATACAT--TACGCCATATTA--CTAAATCTAAAATAC------CAC-CATGTTAA--TCTCA-TGGCAA-A-----------CAATTTGTCATGCAAGATTT-AGAAACAACTTTAGTAATCTAAATGCCGAT---CTATGTAGAAATCATCTGCATTC-AT
gi|3 : AATTAT-ATTACCCCATATTGTAGAACAAAGATAAT-GCGGAAGTCGTGCATTCC-TCTCTCA--TTACTTTT---GGGAAT-CAGCTAAAATGTCAATATTAAAAACAGC-GCCTTCACTTT--CAATCATTAAAATTACAT--CACGACATCATG--CTTAATTTAAAATAC------CAC-CATATTAT--TATCA-TGACAA-ACGATGTTTC-TCAG-TTGTCATGCAAAACTT-AGACACAACTGTAGTAATCTAAATGCCGAT---CTATGTAGAAATCATCTGCATCC-ATCACC-----GTG-------AA--GA------TAT-----AGAAGAAG-TGAACA
gi|2 : AGAACACAACTAATTGC-AAATTCGTTTATTCCGTCATGCG--TATCTATT---TGGAATACA-CTTCC-CGAGTACATTTG---TAAC-TCAGAGACTTTATCAATTTTTAAAACT-CA---TATAAC-AAACA--TTTATTTTAAAACGCAAATGGTAC-CATCGTATAATCTAACTGGTAGTC-GA-ATTTCATCAGTTTCCCACG-ATCGTTTGAGAAACGGATGTAGTCATCTCAAGTTTGATACATTTTTT--AAAT--TCT----TT-AATA-CTTGATGCAAGATG-CGACGGATGCGGTAATGAAAAAAAAGACGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAACGACTT----CGCCTT-TTTCGTTCCACACGCCGT-TTTCATCCCTTAAGTAta
gi|7 : ctattctacatattaatatccgaagtattcgaaacaagtttaactacataaaaaataactttatggattttgatatactttgttttactgcaactcacttaactgatgaaattgcaaatatagatattaatttagatggttttccagacctagtggtattttaatctatgcttcaaatcatctcatttcaaaaagaagattagacttagaatgtccgttaactgattctgtttgtgttgaagtcgggtacaagagggaccgatttttttatgtgctgtgtataccgttccccgaacacgcctgtagcattttggaatatttttaacacatgtattgaaaaagctcttgttttgtcaaaaaatatagttttagtaggtgatattaacgaagaccatttaaatactaacaataatcgtcttagaaatactatacttattaacaatttgacaaatgtcattacagaactaaccagagcaactgaaactacatcaactctgatagatccaatacttatatcagatacatttaaatgtctcaattctggaactttagatgttccgaatagaataagcgaccataaagctacttatatttatatcccattttctctgtttacacctcctgctttaactaaaaaagtttggttttatataagaggtgataatgacaaaatgaatgacatgataacttactttgattgggagtttatttcctatatttccataaacgcagaaacaatcttagattttatgcaaaaatgtattccctccaatgatataaccatcagacctactgacaagccatggtacaactctctgaaagcagacggactactagactacgagacagataaaggacaaaatcaatacaaacgcaaagaacagacgactggactaaatacaaacagttaagaaacaaagtaaataatttgaaaacgcatgctagagaacagtactttaataatatagaaactttagtttcaggcatcaaaactacaattccaaacctttactggaaacttcttaaacagattatttaggaaaacaaaaatactgaaaccataccccccttaaaaagaacctcagacactggggaggaaacctacttttataacgacgaagaaaaggcaaattgtttgaacgactatttcatttctatttcaacaatcagtaatgaaacgaatattacatttcaaaatgaaaactcgaaaactaataattttctttctaatattattataactaagtctaaaagagaagatacgattaatatccttgacactaacacatctgttaggaatgataaaataagtcacaaagtttgaagtatacagaatatagtaattctaaacctcttgtactgttatttaatagatcatttatcaaatgtgaatttccagatttatggaaatcagccctagtaatgccacttttcaaaaaaggtaaaacaaacctggcgtctaattatcgaccaatttcactcttaagctgtattggcaagttaatggaaagaattgtgtacaaacatatatatatatacttttcttgttgataataacctcatttataagttacaatctggatctctgaaaggacattccacagtttaccaacttttagatatattatcaaatttgtcaaggcatagtgaataaacaatacacttgtatggtattttgtgatgtagcgaaagcatttgatcgcgtgtggttgaaaggtcttttgttcaaattaaagcaaaatggtataaatggtagtcttcttaattggatcgacagttatttaaacaaacgtgaacaaagagtatttatatgtaatagtatttccgaaataaaaaaacaaaaaaaactgccggagttccccaatgttctgtattagctcctttattcttttaaatttacattaatgatttagccgaaaatttgttaagtattacatgaatagttgcagatgatacatctcttgcttttacatcttcaaatttaatagatttagaaggtataatcaataatgatctgatcgttatatcaaagtgggcaaaacaatggttagtgaattttaatccccaaaagactgaagctatactttttactctaaatagaaatgtttcaaatccaaatttattgtttgaaaatgttttagttaatttgtagaacaccgtaatcatttaggtatttcttttaatcatgatggaaaatgcatcaacacataaataatattgtttcatcagcttcaaatattttaggcatgatgcgaaaaatcaaatttactcttaatcgcaaatctcttaaccaaatatatatatatatatcatttttgctaccagtttttgaatatgcatcaattgtttttgataattgttcccaatatgaaaaagacaaactagaaaaaatacaacacaaagcagctagagtggttactggtttgacgcgttctgtttctataaatatgttatacactgaaatcggatggttatcgctatcagaaagaataaaatatcaaaaatatattattgcatataaacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaGGAAT-CAGCTTGG-TGACAATATTAAAG-CTGC-GTCTTCATATT--CAGTCTTTAAAAATACAT--TACGCCATAATA--ATAAATACAAAATAC------CGC-CGTATCAA--TCTCA-TGACAA-ACGATGTGTC-TCGGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGAT---CTATGTAGAAATCATCTGCTCCC-ATCACCGTTCTGTCAG-TGTC-----A---GGTTAT-----AGAAGATACCGA
gi|30 : GCTTGA-TGACAATATTAAAG-CAGC-GCATTCACTTT--CAATCTTTAAAAATACAT--TA
gi|27 : tcGTAATAATCTAAATGCGGAT---TTATGTAGAACTCATCTGCATCCTACT-CCGTTCTGTGAG-TGTCAA--GC---GGTTAT-----AGAAc
gi|20 : cAAT-AAAGGC-TGATATGTCATTTTCCTGACAACTCG-AACACTACATCCGTTAGATATTAATTTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAAC-ta
gi|31 : ACG-AGTATGACACCAGTTAGATATGAACATACTAGGGAGTGGAAGTGAAATTCTAat
gi|22 : actCG-AGCATTACATCCGTTAAATATT-ATCTACTACTGA-------------------------AGATAATATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
14 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TATCAGATATATATAAACCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGTAATAATGATAAATTGAATGATATGATACATAACTTTGATTGCGAGTTTATTTCCACCAATGTCATAAACGCAGCTTGTGAATATTTTTCAAAAACAATTTTAAATTTTATGCAA
Unaligned ( gi|5 ): AAAAACATAATATTATTAAGGTGTTGACCTTTTAAACCCTAATTGTCAACACCTTAATAATGTAATGTTGTTAAATAATCTATGCTGTGTTATGACAGAACCTACCCGAAATACAAGGGCCACACAGATAGATCCAATTATTGTATCCGATTCTATTAAATCATTAAATGAAGGAACTATAAATGTACCTTCGAATTAAGCGACCTTAAATCTACTTTTATTGTTTTTCCTTTTTCTGTTATTCTAACTCTTGC
Unaligned ( gi|9 ): TCCCATTTTCTCTGTTTACACCTCCTGCTTTAACTAGAAATGTTTGGTTTTATATAAGAGGTGATTATGACAAACTGAATGACATGATAAATAACTTTGATTTTGAATTTATTTCCTATATTTCCATAAACGCAGCGGGTAAACGTTTTTCAGAAACAATTTTAGATTTTATGAAAAAATGTATTCCCTCCAAAGATATAACCATCAGACCTACTG
Unaligned ( gi|10 ): ACACCCACCCTTAAAAAGAACTTTAGCCGCTGGGGAGGAAACCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTCCAAATGAAAACTCGAAAACTTATTATTCTCTTTCTAATATTATTATAACAAAGTCTGAAATAGAAGA
Unaligned ( gi|11 ): TCTGTTATATTCTTTATTGATTAAATAAACATTAATGATATAGATGATTAATTGTTATTACACGTTTGTGGGAACAAGATACGAGACATAAGTTGTTTGTACATCAATCTTCAAATTTTACCGAATTAGGAGATGTGTTGAACAATAATTTGATCGTTATATCAAAGTGAGCAAAACAACAGTTATTGATATCAATCCCTA
Unaligned ( gi|14 ): AAAATGTTTGGTTAATGTGAAACTTCATAAACATTTAGTTGTAACTAATGAAAATGGTGTCAATAAACATCGTCGGCTTCAAATAGTATAGATAGATACTTAAAATCAAATTTATTCCAAATTGGAAAATAATTATTCGAAAATTATGTTTCATTCCTAAGATCAGTGTTAGAATATACATC
Unaligned ( gi|18 ): ATCATCCTATTTTCTTTTTGCAACTACTGCTTTAAGTAGAAAAGTTTGGTTTATAAAAAACGTGATTACGATAATTTGAATGACATGATACATAACTTTAATCTGGAGTTTATTTACACTATTTCC
Unaligned ( gi|19 ): AATTTAGCATTATTTTATGTTTAAAGTTACTACTAATCTTGTCCCTTGCTATATTAATGACTTAATTCCAACATATGTTGGTGAGACAACACAATACTCACTTAGAAAAAGAAACA
Unaligned ( gi|21 ): TCAAACAAATATAAAGAGATATATAATTCAAATTAGGTAATTGTCAGTTTTATAAATTCACATTATTAAGCTTTACATGTTATGTTCGGAAATAA
Unaligned ( gi|23 ): AAGCAGCTAGAGTAAATACCGGTTTGACGTGTTTAGTTGCTGTAGATAAGTTATAAATCAGATGGTAATCGCTATCAGAAAGAAGAA
Unaligned ( gi|26 ): TAATCGTAAGGTATGGTTTTATAAACGAGGAGACTTTGATAAATTGAATAAAAGAATCTCTAATACTAATTGGGATTTTATT
Unaligned ( gi|28 ): GAGCTGATTATGACAAACTGAATGACATGATACATAACTTTGATTTGGAAGTTTATTTGCTACATTTCCATAAACG
Unaligned ( gi|29 ): TGTTTCTATAAATAACTTATACACTGAAATCAGATGGTTATCTCTATCAGAAAGAAGAAACT
Unaligned ( gi|32 ): TAAAGCTGCTGTTCCTGATAATATCAGTGCACACTTACTCGAAGAATGCAAGAA
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 55555 11 11 1 2 1 666666666666666666666666 2 33333333333333333333333333 11 333 1 11 2 1 555555 22222 1 22 11 1 1 333 1 333 1 11111111 1 11 3333333 11 1 2222222 333333333333333 44444444444444444444444444 11 2222 22222 222 111 11 111 33333 1 2 4444 1 5555555555555555555555555555555555555555555555555555555555555 4444444444444444444444444444444444444444444 11 111111 777777777777777777 11 44444444 222222 555555 11 2 222 22 1 333 11 1 6666666 2 222 2222 222 333 1 222 2222 33333 11 2222 11 1 11 1 555555555555555 11 11 3333333 7777777777777777 1111 111 2 111 555555 1 2 1111 11 33333333 111 11111 2222222 111 11111 11 11 11 11 1 11 222 2 1 2 22 11 222 2 4444 1 55555 2222 2 1 22 11 333 22222 4444444444444 4444444444 11 1 33333333 2222 777777777777777777777777777 11 1 2222 22222 1 1 11 22 2 1 22222 111111 222 2222 1111111111111 111 33333 22222 2222222222 11 444444444 22 11 22 22 333 5555555555555555 11 222222 7777777777777777777777777777777777777777777777777777777777777777777777 1 1 1111 1 1111 111 222222222 1 11 55555 1
lowQualScore : 77 2 2 00000 88 4 4 88 5 4 4 2 3 0 5 2 66 000000000000000000000000 4 0 2 44444444444444444444444444 88 2 2 555 3 3 5 88 3 0 55 5 4 4 777777 66666 2 777 4 4 3 5 22 77 5 2 5 55 2 555 2 5 4 3 4 4 111 2 7 4 6 3 44444444 6 3 99 6666666 4 66 7 6 4444444 999999999999999 0 7 88 66666666666666666666666666 7 44 1 6666 777 77777 7 333 888 88 999 8 3 0 5 11111 0 1 0 3333 1 1 11 1 0 8888888888888888888888888888888888888888888888888888888888888 1111111111111111111111111111111111111111111 8 11 8 22 6 444444 000000000000000000 8 22 8 6 00000000 1 22 1 4 4 999999 2 4 777777 88 2 2 0 000 77 5 555 88 3 66 5 4 4 2 4 2 2 4 3 5555555 0 000 4444 000 2 555 5 2 2 66 111 77 4 3 4 1 1111 33333 3 3 88 4 6 66 2222 3 2 2 3 3 33 0 88 3 7 7 4 4 4 1 4 1 111111111111111 7 88 88 1 7 1 2222222 444 3333333333333333 0 3333 0 0 222 3 3 777 222222 3 6 6 4444 00 1 33333333 3 777 1 22222 6666 33 7777777 000 1 88888 11 8 11 11 1 4 1 1 1 8 99 33 0 1 00 1 1 1 11 1 11 0 1 111 0 2 77 2 5 0 88 4 66 3 2 77 88 111 0 2222 4 5 00000 4444 666 4 2 4 2 999 3 0 4 5 4 88 66 4 77 88 555 2 2 77777 77 3333333333333 2 4 4 1111111111 2 4 3 4 99 6 6 2 8 8 0 66666666 0000 222222222222222222222222222 88 6 88 2 7 8888 8 88888 4 6 1 3 6 7 2 3 4 88 2 77 77 4 0 5 88888 7 88 88 0 8 555555 1 7 6 666 6 8888 4444444444444 4 222 0 7 33333 55555 0 8888888888 4 7 8 3 4 3 66 88 2 555555555 3 77 88 3 2 3 1 1 0 1 1 1 55 1 44 22 666 1 2 2222222222222222 11 7 888888 0000000000000000000000000000000000000000000000000000000000000000000000 6 3 3 3 8 8 7777 3 8 3 1 1 3 6666 2 8888 6 000 5 5 5 1 66 1 77 6 3 1 1 666666666 6 3 1 2 6 0 5 5 8 22 8 3 00 3 3 2 1 4 55 4 4 2 2 1 0 99999 0 1 2 333 1 0 8 3 1 2 0 2 7 7 4 3 2 2 4 4
lowQualScore : .. . . ..... .. . . .. . . . . . . . . .. ........................ . . . .......................... .. . . ... . . . .. . . .. . . . ...... ..... . ... . . . . .. .. . . . .. . ... . . . . . . ... . . . . . ........ . . .. ....... . .. . . ....... ............... . . .. .......................... . .. . .... ... ..... . ... ... .. ... . . . . ..... . . . .... . . .. . . ............................................................. ........................................... . .. . .. . ...... .................. . .. . . ........ . .. . . . ...... . . ...... .. . . . ... .. . ... .. . .. . . . . . . . . . ....... . ... .... ... . ... . . . .. ... .. . . . . .... ..... . . .. . . .. .... . . . . . .. . .. . . . . . . . . . ............... . .. .. . . . ....... ... ................ . .... . . ... . . ... ...... . . . .... .. . ........ . ... . ..... .... .. ....... ... . ..... .. . .. .. . . . . . . .. .. . . .. . . . .. . .. . . ... . . .. . . . .. . .. . . .. .. ... . .... . . ..... .... ... . . . . ... . . . . . .. .. . .. .. ... . . ..... .. ............. . . . .......... . . . . .. . . . . . . ........ .... ........................... .. . .. . . .... . ..... . . . . . . . . . .. . .. .. . . . ..... . .. .. . . ...... . . . ... . .... ............. . ... . . ..... ..... . .......... . . . . . . .. .. . ......... . .. .. . . . . . . . . . .. . .. .. ... . . ................ .. . ...... ...................................................................... . . . . . . .... . . . . . . .... . .... . ... . . . . .. . .. . . . . ......... . . . . . . . . . .. . . .. . . . . . .. . . . . . . ..... . . . ... . . . . . . . . . . . . . . . .
lowQualScore : 00 5 5 00000 55 0 0 55 5 0 0 5 0 0 0 5 55 000000000000000000000000 0 0 5 00000000000000000000000000 55 5 5 000 0 0 0 55 0 0 55 5 0 0 555555 00000 5 555 0 0 0 0 55 55 5 5 5 55 5 000 5 5 0 0 0 0 555 5 3 7 7 3 77777777 7 3 33 7777777 7 00 3 0 7777777 333333333333333 7 7 77 00000000000000000000000000 3 33 0 7777 000 77777 7 333 000 33 777 0 2 8 6 00000 0 0 4 4444 0 0 88 4 6 3333333333333333333333333333333333333333333333333333333333333 0000000000000000000000000000000000000000000 0 88 0 00 0 666666 444444444444444444 0 66 0 4 66666666 0 00 0 0 0 555555 5 0 555555 00 5 5 0 555 55 5 000 55 0 55 5 0 0 5 0 5 5 0 0 0000000 0 555 0000 555 5 000 5 5 5 55 000 00 0 0 0 0 7777 33333 7 7 33 0 7 00 7777 0 3 0 0 0 00 7 33 3 3 3 7 7 0 0 0 0 222222222222222 3 33 33 0 3 0 0000000 333 6666666666666666 7 0000 7 7 000 7 7 000 333333 3 7 7 8888 22 0 88888888 2 555 0 66666 0000 22 0000000 444 0 44444 00 8 88 00 0 4 4 0 0 0 00 22 0 0 88 0 0 0 77 0 77 7 0 555 5 5 00 5 0 0 00 0 00 0 5 55 00 000 0 5555 0 5 00000 0000 000 0 5 0 5 555 0 0 0 0 0 00 55 0 55 00 000 5 5 00000 00 0000000000000 5 0 0 5555555555 5 0 0 0 33 7 7 3 3 3 7 77777777 0000 777777777777777777777777777 33 7 33 0 3 3333 3 33333 7 7 0 3 7 3 0 0 0 55 5 00 55 0 0 5 33333 3 33 33 7 3 333333 0 3 7 333 7 3333 7777777777777 7 000 7 3 33333 33333 7 0000000000 0 0 3 7 0 0 00 55 5 000000000 0 55 00 0 5 7 0 0 2 0 4 0 44 0 22 22 000 0 8 4444444444444444 66 3 000000 0000000000000000000000000000000000000000000000000000000000000000000000 7 7 3 3 0 0 0000 8 0 2 0 4 2 6666 2 6666 7 000 7 7 7 0 99 6 99 7 5 7 0 777777777 7 2 0 5 7 0 6 4 0 22 0 2 88 2 2 5 0 0 00 0 0 5 5 0 7 77777 7 0 0 000 0 8 0 2 0 5 2 5 0 3 0 0 5 5 0 0
consensus : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-TTAACGAAGACCATT-TAAAC-CTAA-CA----ATAANCGCCTTAGAAATAC-ATA-TTA---TTAAA--CAATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--AC-GAANCTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--TTAAATNTNTCAAT---GGAACT-TAGATGT---TCCGAATAG-ATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT-----TTACANCTCCTGCTTATAACTA-GAAAAGTTTGGTTTTACATAAAAGGCG-A--ATTTCGAT--CT----T--A-A--ATAAAAT-GA-----AANAT----AAC------TGATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--AAT------GAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TT---TGGTCAAA-A-AT-GTATTCCNTCTAA-A-AT-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATNTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-CA---CTGTTAATANANATAAA---C--GTGGCCA-TGACTCTATAAGCCATAANACGTTTAAAGG-GTA-ACANAACCCATA-----TCTAAACCT-TTAGCCATACT-T--TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGT--GACAAGCCTATG--GCTTCNAATTACAGACCAATTTCNC-T--CTT-AGC-TGTTGCGGCAAGNTATTNGAAAGAATCGTTTTTAAACATATGTACATATACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-CTAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCGA--ATT---TGTTAAGT-TTACACG--------AATAG-TTGCA----GAC--GATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT-CTTTTAACCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAA-C-CTTAATCGAATATATA--TATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATANGTTATACAC-TGAAATCGGATGGTNATCGTCTAT--TCAGAAAGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGACT-----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
Reference ( family-1625 ) : NNATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCAC-TTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCATT---TCAAAAAGAAGATTAGACTTAGAA-TGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTA-GGTGATATTAACGAAGACCATT-TAAATACTAA-CA----ATAATCGTCTTAGAAATACTATACTTA---TTAA---CAATTTGACAA-ATGTCATTACAGAACTAACCAGAGCAACTGAAACTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATTTAAATGTCTCAATTCTGGAACTTTAGATGT---TCCGAATAGAATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT-----TTACACCTCCTGCNTATAACTGCGAAAAGTNTNGTTNTACATAAAAGGCG-A--ATTTCGAT--CT----T--A-A--ATAAAAT-GA-----ATNAT----AAC------TGATTGGGA--C-TGNT-TGNTA----AAC-TGNTNTA-TT--NAT------GAA-GCTTGT-GACGTTTTTACAT-AAA-TATTTAT---A-G------TGGCCGAA-A-GT-GTATTCCGTCTAA-A-NC-G-TAACTATCCGNCNNANTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCC-C--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCNAATTTTGNTAT---T---TC------AGAAAATACGAT--ATATC--TGANATTNTAA-CA---NTGTTAATANAGATAAAC--C--GTGACCA-T-ACTCTATAAGTCACANNACGCTTGAAGGTGTATACAGAACCCATNGTAATTCTAAACCT-TT-GCCATACT-T--TTTAAC-CGNTCA--TCTG-ATGAAG---GNATTTACCC-GATGTTTGGAAANTAGCGAAC---GTN-GCGCCANTATATCAAAAAAGGT--GACAAGNCTATG--GCTNCTAATTACAGACCAATTTCNC-T--CTT-AGC-TNTTGCGGCAAGNTANTNGAAAGGNTCGTNTNCAAGCATATGTNCATATACTNTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATATT----ATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAAA---CAAACGTGAACAAAGAGTATTTATATGTAAT----AGTATT---TCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTATTAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT---TGTTAAGTATTACATG--------AATAG-TTGCA----GAT--GATACATCTCTTGCTTTTACATC----TTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTTT--TAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAATCATGATGGAAAATG-CATCAACACATA----AATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACNGGNTTGACNCGTTCTGTNTCTATTCAAANATGTTGTACACNNGAANTCGGGTGGTTACCGTCTATCGTCGGAGAGAANAAAAATATCAAAAATATATTA--TTGCATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAANTCGTGCATTCCGTCTNNCATTTCTTTT---CGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCNTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CATATTANTCTCA-TGGCAAACGATGTTTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGCGAGTGTCAAGAGGTTATAGAAGANGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAANGGCTTGATACGCCNTTTTCCNNNCNACACGAGCA-TTACATCCGTTAGATATTAATNTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
gi|1 : ATTTTACACTGTAATATTAGAAGTATTAGAAATAAGATAATTTT--TTTTGTTAAAAAC--CTTT-TAGACCATGATATTCTTTGTTTTACTGAAACGCACCTTGA-TAATCAGATACCAAATGACTCTTTA-ATACTTAATGAAAACTTTGATATATTTTACAGAAATGAACGTTCTAATCATGGAGGGGGGATACTT--ATTTATGTTTCAAATAGTGTTATTCATTCCAGGCGAA-AT--GCCTTGGAAATATTTTGTAAC-GAATCAATTTGGATAAATGTCAAAATCA-----AAAATGAAAATATACTATTAGGTG-TGTTCTATA--GT-CCCAAAAC-CGCAGATACCACGTTTTTCGA-TAACCTGAATGTAAATATTGAGAAGGCCTATGAAACTTCTCAAAA--TATCGTCCTCCTA-GGTGATTATAATGAAAAC-ATTCTAAA--CTCATCATTCCATAACC----T-GAAAGAC-ATA-TTAACCTTAAACTCACTT--ATCA-ATATTATAAATGAACCCACCAGA-------AATCTAGCCAT----TCT--T-GATCCAATCATTGTACCATATG-------ATATGCCA------------TAGAAGT---TCCAGCTAACATAAGTGAACATAAAGCAACATTTATA----ATATTACCATTCCC---GTACGAGCTAAA--TTCTACATATAA--AAGACAAATATGGTTGTACA-ACAAAGCA-A--ATTTTAAT--CTCCTTT--ATG--ATAAAGTTGA-----ATCAT----A--------TGATTGGGA--C-TGCT-TAATA----AAC-TGCTCTA-TT--AAT------GAA-GCATGC-GACAAGTTTACAT-ATA-TATTTATTGAA-A------TGGTTAAA-A-CTTGCATACCATCTAA-A-TT-AATAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTC------AGAAGTTGGAAAATATCTA--AAAATAAGAGATAGACTAAAG---AAAATTGCAAT-TAAATCAGGTAAGG--CAAATGATGGGTGTAGATATAA-CAATCTAGAAACAAAGTAAATAACATAAAAAAACAAGCTAAAGAAAACTTTTTTAATAATCTGAAAATTTCATTAAACGATTTACAG---TCGAA----CGAT---AAAACAGGTTT-CTGGAAAATCATTAGACATTTTGTT---AAAAATTCAGACTCTGCATCCACATTT-CAACCTCTTTGTAAAACAAATATAAATGGCACT-------AAATATTCTCTTATTTCTTG-CAAAGAAAAGGCTGAGCACCTTAATGACTATTTTACATCTATATCGAC--CCAA-GACGAGATAAATGTCCAACGAC--CAGTATCTACAC-CAAAAACAGATGAGAGTCTTACAAATTTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAAACA---CTGTTAATATAAATAAAG--CATGTGGCCA-TGACTCTATAAGCCATAAGATGTTTAAAGGGGTA-ACATAACC-ATA-----TCTAAACAT-TTAGCCATACT-T--TTTAAC-CGCTC---TCTGGATGAAG---GGATTTATCCTGACGTTTGGAAGATAGCAAAT---GTT-ACACCAATATAT--AAAAAGGT--GACAAGCCTATA--GCTTCAAACTATAGACCAGTTTCTT-TA-CTT-AGC-TGTTGTGGTAAGATATTTGAAAGAATCATTTTTAAACACATGTACA---ACT-TTCTTCTTACAAATAAATT-ATTGTATAAATATCAATCAGGATTTCTACCAAACCATTCAACAACATTT--CAG---TTAGTATACATCTTTCATTATATCTG-CAAAACCTTTGATAGC----AAACAATTTTCATGTATAGTATTCTGTGACATATCGAAGGCTTTTGATCGTGTCTGGCATCAGGGGCTCTTATTCAAACTTAATG-AAATTGGCATTTATGGTACACTACTTAGTTGGTTATCAA--GTTATCTGAAACACAGATCTCAAC-----GTGTTGTTATACAATCATCAGAATCCACTCTTAAGTATATAAA----------TGCAGGTGTTCCCCAAGGATCTGTCCTTGGACCTCTATTATTTCTAATATATGTTAACGATATCGCTGA---TTCACTATTAAGT-TTA------------ACTAGGTTGTATGAGGAC--GATA-GTTCCTTA-TATTAT-TC----TGCAACTTCTACCCAGGATCTTGAAGGTATTATAAACTATGATCTTGAT-ATTATATCTAAATGGTCTAAACAATGGATGGTGAACTTTAATCCG-AACAAACTGAAGCTATGTTCTTCTCTTTAAG--AAAACCTGACAGACTACCTAATGTTAT-ATTTGAAAATACTTATTA--CAATTTGTTCATTCTCATAAACATCTTGGTGTTACTTTAAGCCATGATGGTAATTG--GTCAACACATATTGAAAGCATATTACTT--TCTGCTTCCAAGACAATACACATTATGAGACACTTAAAATTCACTATTGGAAGAAACGCA-----CTCAATCAAATGTATA-----A-ATCGTATGTGCGTCCAATTCTAGAGTATTCTTCATTGGTCTGGGATGGTTG--CACAGT--GCACTTCACAGATTCAA--TAGAAAAACTACAAAACGAAGCAGCACGAATTGTCACAGGACTTACCCGATCAGTATCTATTCAAAAAC--TGTATA-ATGAATGTGGATGGGAACCACTTA----AAAAGAGAAGAGAAAT-TTAAAAATAT--TACCTTATGTATAATGTATACCATTCAAATATTCCAAGTTATATAAATGATCTTTTCCCACCTCTATTTGGTGCAACAACTGAATACCCACTAA-GAAA-CAGGAATAACTA-TACTACTC----CATACTGTAGAACAGAGATAA-TGCGAAAGTCATGCATTCCCTCTTCTATTTCTCTT---TGGAAT-CAGCTT---GA-TGAAAAAATTAGAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TATGCCAAAATACTAAATTTAAAA---------TACCAC-CATAGTATTCTCA-TGGCAAA-GATGTGTC-TCAGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATTTAAATGCCGATCTTTGTAGAAATCATCTGCACCCATTACCTTTCTGTGAGTGTCAAGAGGTCATAGAAGATGCTGAACACTACTTCTTTAAATGTCCTAAATAAAGCAATCAAAGACT-----CGTCTTGTTTCAAACAACACGAGCA-TTACATCCATTAAATATTAATCTACTACTGAGTGGAAGTGAAACTATATCTATAGCAGATAAC-TTACTATTGTAGATGCTGTCCATAACTTTATTAAAGATACCCATAGTTT
gi|10 : cgACACCCAC--CCT-----TAAAAAGAACTTTA--GCCGCTGGGGAGGAAACCTANNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NC-ATTTCCAAATGAAAACTCGAAAACTTATTATTCTCTTTCTAATATTATTAT---t
gi|11 : TCTGT--TATATTCTTTATTGATT-AAATAAACATTAATGATATAGATGATTAAT---TGTTA----TTACACGTTTGTGGGAACA------A----GATACGAGACATAAGTTGTTTGTACATCAATCTTCAAATTTTAC---CGAATTAGGAGATGTGTTGAACAATAATTT-GATCGTTATATCAAAGTGAGCAAAACAACAGTTATTG-ATATCAATCCCTAaacaaagtctgaaatagaaga
gi|12 : CATATAA--GCGAAAAGTATTGTTGTACA-AAAGGGCA-A--ATTTTGAT--CT----TTTA-A--ATAGAA---A-----A--AT----AAT------TGATACTGA--C-TGGTCTGATATTTTAACATGATGTA-GT--AATATAGATGAA-GCTTGT-GACGTTTTTACTTCAAACTATTTAG---ATA------TGGCTGAAGA-AT-GTATTCCAAATAA-ACTT-G-TAATTATTCATCAAAATGA
gi|13 : aTACCGACTTA-GAAA-TAGTAA-AAATATTGTTATTC----CCAATTGTAGAACAGATGTTA-TGAAAAATGCATGTATTCCATCAGG--TTTCTTTTATACGGAAT-CAACTA---GA-AGACAGTGTAAGAT-CATCTGCATCC-TTTTCAATTGTCAA----ACATGATATG-CGTAGT-CTAAATGGAAA-------------CACACATATTACT-TTA-TGt
gi|14 : AAAATGTTT---GGTTAAT--GTGAAACTTCATAAACATTTAG-------TTGTAACTA--ATG-AAAATGGTGTCAA----TA----AACA--------TCGTCGGCTTCAAATAGTATAGATA-GATACTTAAAATCAAATTTATTCCA-----AATTGGAAAATAATTATTCGAAAAT-----TATGTTTCATTCCTAAGATCAGTGTTAGAATATACATC
gi|15 : CA-TGACTCTATAAGCCATACTACGCTTAAAGGTGTA-ACAAAACCCATC-----TCTAAACCT-TTAGCCATATT-T--TTTAAC-CGCCCT--CTTA-ATGAAG---GGATTTA----------TGCAAAATAGCAAAT---GTT-TCACATCTATAT-AAAAAAGGT--GACAAAGCTATA--GTTTCAAACTAAAAAT--ATTTTTT-T--CT
gi|16 : AAAGCA-A--ATTTCGAC--TTGC--T--A-A--ATAA--T-AA-----AATATCAGAAAC------TGATTGGAG--CATGCT--GCTA----AAC--GGTACAGTT--GTT------GAG-GCTTGT-GAAATGTTCTCAA-AAA-TATTTAT---A-AGTT---TAGTCAAA-ATGT-GTATTCCGTCTAA-A-ACAA-TAACTGTCC
gi|17 : CCC-AAAGTTTGGAAGGAAGCGTTC---GTATGTGCTATT-TA-CAAGAAAGGA--GACCCGTCTTTG--GCTAATAATTACAGACCTATTTCACTT--CTA-AGTGTATTG-AACAAAGTATTTGAAAGGCTCGTTTTTAAGCATATGTTCA
gi|18 : tatATC-CTATTTTCTT--T-----TTGCAACTACTGCTT-TAAGTA-GAAAAGTTTGGTTT---ATAAAAAACGTG--ATTACGATAATT----T--G-A--ATGACAT-GA-----TACAT----AAC------Tattatttt
gi|2 : atcATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCAC-TTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCATT---TCAAAAAGAAGATTAGACTTAGAA-TGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTA-GGTGATATTAACGAAGACCATT-TAAATACTAA-CA----ATAATCGTCTTAGAAATACTATACTTA---TTAA---CAATTTGACAA-ATGTCATTACAGAACTAACCAGAGCAACTGAAACTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATTTAAATGTCTCAATTCTGGAACTTTAGATGT---TCCGAATAGAATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT-----TTACACCTCCTGCTT-TAACTA-AAAAAGTTTGGTTTTATATAAGAGGTG-A------------------T--A-ATGACAAAAT-GAATGACATGAT----AACTTACTTTGATTGGGA-----GTT-TATT---------TCCTATA-TTTCCAT------AAACGC-AGA-AACAATCTTAGAT-------TTTAT---G------------CAAA-A-AT-GTATTCCCTCCAATG-AT-A-TAACCATCAGACCTACTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCC-C--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCTAATATTATTATAACTAAGTCTAAAAGAGAAGATACGATTAATATCCTTGACA--CTAA-CACATCTGTTAGGAATGATAAA---------------------ATAAGTCACAAA--GTTTGAA---GTATACAGAA--TATAGTAATTCTAAACCTCTT-G---TACTGTTATTTAAT-AGATCA--TTT--ATCAAATGTGAATTT-CCA-GATTTATGGAAATCAGC---CCTAGTA-ATGCCACT-TTTCAAAAAAGGTAAAACAAACC--TG--GCGTCTAATTATCGACCAATTTCAC-T--CTTAAGC-TGTATTGGCAAGTTAATGGAAAGAATTGTGTACAAACATATATATATATACTTTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATATT----ATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAAA---CAAACGTGAACAAAGAGTATTTATATGTAAT----AGTATT---TCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTATTAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT---TGTTAAGTATTACATG--------AATAG-TTGCA----GAT--GATACATCTCTTGCTTTTACATC----TTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTTT--TAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAATCATGATGGAAAATG-CATCAACACATA----AATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACTGGTTTGACGCGTTCTGTTTCTAT--AAATATGTTATACAC-TGAAATCGGATGGTTATCG-CTA---TCAGAAAGAAT-AAAATATCAAAAATATATTA--TTGCATATAAACTTAAAACTGGAATTCTACCCGATTATTTATTTTCTCTTTTTCCAGAAACAGTAGGAGTAAATACACCTTA-CAACTTACGAAATTCTTCC-GATTA-TGTTGTTTTCAACACA----AGAACACAACTAATTGC-AAATTCGTTTATTCCGTCATGCGTATCTATT---TGGAATACA-CTTCCCGA-GTACATTTGTAACT-CAGA-GACTTTA---TCAATTTTTAAAACT-CA---TATAACA-AACATTTATTTTAAAACGCAAATGGTACCAT-CGTA-TAATCTAACTGGTAGTCGA-ATTTCATCAGTTTCCCACG-ATCGTTTGAGAAACGGATGTAGTCATCTCAAttaatctggagtttatttacactatttcc
gi|2 : ctAAAAGACGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAACGACTT----CGCCTTTTT-CGTTCCACACG-CCGTTTTCATCCCTTAAGTAgtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaaaaagacgccgagcgctactttatgcaatgttctatatatactgatgaacgacttcgcctttttcgttccacacgccgttttcatcccttaagta
gi|20 : ctattctacatattaatatccgaagtattcgaaacaagtttaactacataaaaaataactttatggattttgatatactttgttttactgcaactcacttaactgatgaaattgcaaatatagatattaatttagatggttttccagacctagtggtattttaatctatgcttcaaatcatctcatttcaaaaagaagattagacttagaatgtccgttaactgattctgtttgtgttgaagtcgggtacaagagggaccgatttttttatgtgctgtgtataccgttccccgaacacgcctgtagcattttggaatatttttaacacatgtattgaaaaagctcttgttttgtcaaaaaatatagttttagtaggtgatattaacgaagaccatttaaatactaacaataatcgtcttagaaatactatacttattaacaatttgacaaatgtcattacagaactaaccagagcaactgaaactacatcaactctgatagatccaatacttatatcagatacatttaaatgtctcaattctggaactttagatgttccgaatagaataagcgaccataaagctacttatatttatatcccattttctctgtttacacctcctgctttaactaaaaaagtttggttttatataagaggtgataatgacaaaatgaatgacatgataacttactttgattgggagtttatttcctatatttccataaacgcagaaacaatcttagattttatgcaaaaatgtattccctccaatgatataaccatcagacctactgacaagccatggtacaactctctgaaagcagacggactactagactacgagacagataaaggacaaaatcaatacaaacgcaaagaacagacgactggactaaatacaaacagttaagaaacaaagtaaataatttgaaaacgcatgctagagaacagtactttaataatatagaaactttagtttcaggcatcaaaactacaattccaaacctttactggaaacttcttaaacagattatttaggaaaacaaaaatactgaaaccataccccccttaaaaagaacctcagacactggggaggaaacctacttttataacgacgaagaaaaggcaaattgtttgaacgactatttcatttctatttcaacaatcagtaatgaaacgaatattacatttcaaaatgaaaactcgaaaactaataattttctttctaatattattataactaagtctaaaagagaagatacgattaatatccttgacactaacacatctgttaggaatgataaaataagtcacaaagtttgaagtatacagaatatagtaattctaaacctcttgtactgttatttaatagatcatttatcaaatgtgaatttccagatttatggaaatcagccctagtaatgccacttttcaaaaaaggtaaaacaaacctggcgtctaattatcgaccaatttcactcttaagctgtattggcaagttaatggaaagaattgtgtacaaacatatatatatatacttttcttgttgataataacctcatttataagttacaatctggatctctgaaaggacattccacagtttaccaacttttagatatattatcaaatttgtcaaggcatagtgaataaacaatacacttgtatggtattttgtgatgtagcgaaagcatttgatcgcgtgtggttgaaaggtcttttgttcaaattaaagcaaaatggtataaatggtagtcttcttaattggatcgacagttatttaaacaaacgtgaacaaagagtatttatatgtaatagtatttccgaaataaaaaaacaaaaaaaactgccggagttccccaatgttctgtattagctcctttattcttttaaatttacattaatgatttagccgaaaatttgttaagtattacatgaatagttgcagatgatacatctcttgcttttacatcttcaaatttaatagatttagaaggtataatcaataatgatctgatcgttatatcaaagtgggcaaaacaatggttagtgaattttaatccccaaaagactgaagctatactttttactctaaatagaaatgtttcaaatccaaatttattgtttgaaaatgttttagttaatttgtagaacaccgtaatcatttaggtatttcttttaatcatgatggaaaatgcatcaacacataaataatattgtttcatcagcttcaaatattttaggcatgatgcgaaaaatcaaatttactcttaatcgcaaatctcttaaccaaatatatatatatatatcatttttgctaccagtttttgaatatgcatcaattgtttttgataattgttcccaatatgaaaaagacaaactagaaaaaatacaacacaaagcagctagagtggttactggtttgacgcgttctgtttctataaatatgttatacactgaaatcggatggttatcgctatcagaaagaataaaatatcaaaaatatattattgcatataaacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaagaacacaactaattgcaaattcgtttattccgtcatgcgtatctatttggaatacacttcccgagtacatttgtaactcagagactttatcaatttttaaaactcatataacaaacatttattttaaaacgcaaatggtaccatcgtataatctaactggtagtcgaatttcatcagtttcccacgatcgtttgagaaacggatgtagtcatctcaagtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaAAAGGCT-GATATGTCATTTTCCTGACAACTCGAACA-CTACATCCGTTAGATATTAATTTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACAT
gi|22 : aatCGAGCA-TTACATCCGTTAAATATTA-TCTACTACTGA-------------------------AGATAATATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
gi|23 : AAGCAGCTAGAGTAAATACCGGTTTGACGTGTTTAGTTGCTGT--AGATAAGTTAT-------AAATCAGATGGTAATCG-CTA---TCAGAAAGAAGAA
gi|24 : TTACAGGATTAACTCGTTCTGTGTCTATTCAAAAA--TTGTATAC-AGAAATCGGGTGG---CTGTCT-TTGTCAGAGAGAAG-AAAATAT
gi|25 : TTTGCTAT---T---TC------AGAAAAT--GAT--ATATC--TGAAATTATAACCA---AACTTGATACATATAAGCCAC--GTGATCATT-ACTCTATAAGTCA
gi|27 : GTAATAATCTAAATGCGGATTTATGTAGAACTCATCTGCATCCTACTCCGTTCTGTGAGTGTCAAGCGGTTATAGAA
gi|29 : cTGTTTCTAT--AAATAACTTATACACT-GAAATCAGATGGTTATC-TCTATCA---GAAAGAAGAAAta
gi|3 : -AATTA-TATTACCC----CATATTGTAGAACAAAGATAA-TGCGGAAGTCGTGCATTCC-TCTCTCATTACTTTT---GGGAAT-CAGCTA---AAATGTCAATATTAAAAACAGC-GCCTTCACTTTCAATCATTAAAATTACAT--CACGACATCATGCTTAATTTAAAA---------TACCAC-CATATTATTATCA-TGACAAACGATGTTTC-TCAGTT-GTCATGCAAAACTT-AGACACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGT---------G--AAGA---TATAGAAGAAGct
gi|30 : GCTT---GA-TGACAATATTAAAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TACtgaacata
gi|31 : tcACGAGTA-TGACACCAGTTAGATATGAACATACTAGGGAGTGGAAGTGAAATTCTA
gi|5 : actAAAAACATAATATTATTAAGGTG---TT------GACCTTT-TAAACCCTAA-TT----GTCAACACCTTAATAATGTAATG-TTG---TTAAA--TAATCT-ATGCTGTGTTATGACAGAACCTACCCGAAATACAAGGGCCA--CA-CA-----GATAGATCCAATTATTGTATCCGATTCTATTAAATCATTAAATGAAGGAACTATAAATGTACCTTCGAAT----TAAGCGACCTTAAATCTAC--TTTTATTGTTTTTC-C---TTTTTCTGTTA---TTCTAACTCTTGC
gi|6 : -AATTA-TACTACTC----CATATTGTAAAATAGAGATAA-TGAGAAAGTTTTGCATTCCCTCTACCATTTCTCTT---TGAAAT-CAGCTT---GA-TGACAATATTAATG-CAGC-GCCTTCAC-TTCAATCTTTAAAGATACAT--TACGCCATATTACTAAATCTAAAA---------TACCAC-CATGTTAATCTCA-TGGCAAA-----------CAATTTGTCATGCAAGATTT-AGAAACAACTTTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATTCAT
gi|7 : GGAAT-CAGCTT---GG-TGACAATATTAAAG-CTGC-GTCTTCATATTCAGTCTTTAAAAATACAT--TACGCCATAATAATAAATACAAAA---------TACCGC-CGTATCAATCTCA-TGACAAACGATGTGTC-TCGGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCTCCCATCACCGTTCTGTCAGTGTC---AGGTTATAGAAGATACCGA
gi|8 : T-T--TATAACATGGTCAGTTCTGGATG--G---GTGTGTACCT-GATGATTGGCATCTTGCCAAT---GTA-GCACCAGTAT-TCAAAAAAGGT--GAGAAG--TATGATGCTGCCAATAACAGACCAGTCTCCC-TCACTT--GC-ATTTGCTGCAAGTCCCTGGA
gi|9 : aagctgctgaccctgacactatcagtacacactccaagaatgtaggaaaaagatcagcccatcatttccactaTC-CCATTTTCTCTGT-----TTACACCTCCTGCTT-TAACTA-GAAATGTTTGGTTTTATATAAGAGGTG-ATTATGACAAA--C-----T--G-A--ATGACAT-GA-----TAAAT----AACTT----TGATTTTGAATT-TATT-TCCTA----TAT-T--TCCA-TA--AAC------GCA-GCGGGTAAACGTTTTT-CAG-AAA-CAATTTT---A-GATTTTATGA--AAA-A-AT-GTATTCCCTCCAA-AGAT-A-TAACCATCAGACCTACTGgcacactat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TATCAGATATATATAAACCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGTAATAATGATAAATTGAATGATATGATACATAACTTTGATTGCGAGTTTATTTCCACCAATGTCATAAACGCAGCTTGTGAATATTTTTCAAAAACAATTTTAAATTTTATGCAA
Unaligned ( gi|19 ): AATTTAGCATTATTTTATGTTTAAAGTTACTACTAATCTTGTCCCTTGCTATATTAATGACTTAATTCCAACATATGTTGGTGAGACAACACAATACTCACTTAGAAAAAGAAACA
Unaligned ( gi|21 ): TCAAACAAATATAAAGAGATATATAATTCAAATTAGGTAATTGTCAGTTTTATAAATTCACATTATTAAGCTTTACATGTTATGTTCGGAAATAA
Unaligned ( gi|26 ): TAATCGTAAGGTATGGTTTTATAAACGAGGAGACTTTGATAAATTGAATAAAAGAATCTCTAATACTAATTGGGATTTTATT
Unaligned ( gi|28 ): GAGCTGATTATGACAAACTGAATGACATGATACATAACTTTGATTTGGAAGTTTATTTGCTACATTTCCATAAACG
Unaligned ( gi|32 ): TAAAGCTGCTGTTCCTGATAATATCAGTGCACACTTACTCGAAGAATGCAAGAA
Alignments
lowQualScore : 22222 11 11 1 1 1 222222 1 1 222222 1 333333333 44444444444 11 222 1 11 1 1 333333 22222 1 11 11 1 1 222 1 111 1 222222222 1 333333333333 111 111111 222 111 222222 88888888888888888888888888888 777777777777777777777777777777 222 33333 11 111 111 1111 2 1 4444444444444444444444444444 1111 1111111 2222222222222222 3333333333333333333333333333333333333333333 11 111111 55555555555555555 222222222 222222 333333 11 1 222 11 1 222 11 1 3333333 1 222 2222 222 222 1 222 2222 33333 11 2222 11 1 11 1 555555555555555 11 11 3333333333 5555555555555 111 222 3333333333 1111 11 222 111 11111111111 2222222 111 222 11 11 11 11 111111 22 1 1 1 11 11 222 1 2222 1 22222 2222 1 1 11 11 222 22222 2222 222 4444444444 333 1 5555555555 1111 777777777777777777777777 1 2222 2222 1 1 11 11 1 1 22222 22222 1 22 2222 11111111111 33333 55555555 11 11111111 11 222222222 11 11 22 11 33 1 11 11 1 1 1111 111 111 222222222 1 333333 1 2
lowQualScore : 22 1 1 77777 88 1 1 88 5 1 1 1 1 5 5 1 22 999999 5 5 999999 1 5 1 888888888 11111111111 88 2 1 111 1 1 5 88 1 5 33 5 1 1 000000 66666 1 333 1 1 1 5 66 77 5 2 5 22 1 000 1 5 1 1 1 1 999 1 7 1 1 3 555555555 6 3 222222222222 666 7 888888 333 666 111111 1 1 33333333333333333333333333333 7 1 222222222222222222222222222222 333 66666 88 999 8 3 0 111 8 1 7777 7 55 1 11 1 0 2222222222222222222222222222 4444 7777777 0000000000000000 9999999999999999999999999999999999999999999 8 66 22 22 6 444444 22222222222222222 8 8 1 333333333 1 1 1 1 1 999999 1 1 000000 88 1 1 5 000 88 5 000 88 2 22 5 1 1 2 1 1 1 1 1 2222222 5 000 4444 000 1 000 5 1 1 22 111 22 1 1 1 1111 33333 1 1 88 1 0 6 22 2222 1 1 1 1 1 33 0 88 3 7 7 1 1 1 1 111111111111111 7 88 88 7 1111111111 6 111 2222222222222 2 222 222 7 1 6666666666 6 4444 00 1 999 99 3 777 0 55555555555 22 7777777 000 1 6 111 11 8 6 11 1 1 1 1 1 99 33 888888 1 1 33 5 1 22 1 5 5 22 1 22 1 1 88 88 111 5 4444 1 5 66666 4444 1 1 1 1 1 1 333 1 5 1 5 1 22 22 1 88 88 111 2 1 77777 22 3333 1 000 2 1 1 1111111111 1 1 1 1 888 1 1 2 0 0 0 8888888888 8888 6 222222222222222222222222 77 22 2 7 8888 7777 1 1 3 6 0 7 2 1 1 88 2 22 88 1 5 5 88888 7 22 1 0 22222 3 7 6 55 6 8888 1 11111111111 3 1 7 33333 00000000 0 88 44444444 0 1 1 1 1 22 88 1 444444444 1 88 88 1 1 1 1 1 0 1 1 1 55 11 99 22 1 11 66 88 8 0 7 88 77 22 22 333 22 1 1 1 2 1 22 22 4444 1 1 1 22 4444 6 3 3 3 8 8 7777 3 8 3 1 8 6666 1 444 6 000 5 5 5 0 66 1 77 6 3 1 1 666666666 6 0 3 1 2 6 0 5 3 8 22 8 3 2 3 3 2 0 1 22 1 1 1 1 222222 2 44 0 8 3 0 2 0 2 6 7 1 1 1 1 1 1
lowQualScore : .. . . ..... .. . . .. . . . . . . . . .. ...... . . ...... . . . ......... ........... .. . . ... . . . .. . . .. . . . ...... ..... . ... . . . . .. .. . . . .. . ... . . . . . . ... . . . . . ......... . . ............ ... . ...... ... ... ...... . . ............................. . . .............................. ... ..... .. ... . . . ... . . .... . .. . .. . . ............................ .... ....... ................ ........................................... . .. .. .. . ...... ................. . . . ......... . . . . . ...... . . ...... .. . . . ... .. . ... .. . .. . . . . . . . . . ....... . ... .... ... . ... . . . .. ... .. . . . .... ..... . . .. . . . .. .... . . . . . .. . .. . . . . . . . ............... . .. .. . .......... . ... ............. . ... ... . . .......... . .... .. . ... .. . ... . ........... .. ....... ... . . ... .. . . .. . . . . . .. .. ...... . . .. . . .. . . . .. . .. . . .. .. ... . .... . . ..... .... . . . . . . ... . . . . . .. .. . .. .. ... . . ..... .. .... . ... . . . .......... . . . . ... . . . . . . .......... .... . ........................ .. .. . . .... .... . . . . . . . . . .. . .. .. . . . ..... . .. . . ..... . . . .. . .... . ........... . . . ..... ........ . .. ........ . . . . . .. .. . ......... . .. .. . . . . . . . . . .. .. .. .. . .. .. .. . . . .. .. .. .. ... .. . . . . . .. .. .... . . . .. .... . . . . . . .... . . . . . .... . ... . ... . . . . .. . .. . . . . ......... . . . . . . . . . . .. . . . . . . . . .. . . . . ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 00 0 0 55555 55 0 0 55 5 0 0 0 0 0 0 0 00 555555 0 0 555555 0 5 0 000000000 55555555555 55 5 0 000 0 0 0 55 0 5 55 5 0 0 000000 00000 0 000 0 0 0 0 00 55 5 5 5 00 0 555 0 5 0 0 0 0 555 0 3 0 0 3 000000000 7 3 000000000000 000 3 000000 333 000 000000 0 0 33333333333333333333333333333 3 0 000000000000000000000000000000 333 77777 33 777 0 2 8 888 0 0 0000 8 88 4 44 4 6 7777777777777777777777777777 3333 2222222 5555555555555555 2222222222222222222222222222222222222222222 0 66 66 00 0 666666 22222222222222222 0 0 0 000000000 0 0 0 0 0 555555 0 0 555555 00 0 0 0 555 00 5 555 55 5 00 5 0 0 5 0 0 0 0 0 5555555 5 555 0000 555 0 555 5 0 0 00 000 00 0 0 0 7777 33333 0 0 33 0 7 7 00 7777 0 0 0 0 0 00 7 33 3 3 3 0 0 0 0 222222222222222 3 33 33 3 0000000000 7 777 7777777777777 5 000 000 3 0 0000000000 7 8888 22 0 222 00 2 555 2 00000000000 44 0000000 888 0 0 444 00 2 0 00 0 0 4 0 0 00 22 222222 0 0 77 5 0 00 0 0 0 00 0 00 0 0 00 00 000 5 0000 0 5 55555 0000 0 0 0 0 0 0 000 0 0 0 0 0 00 00 0 55 00 000 5 0 00000 00 5555 0 555 5 0 0 5555555555 0 0 0 0 777 0 0 0 7 7 7 0000000000 0000 7 777777777777777777777777 33 00 0 3 3333 0000 0 0 3 7 7 3 0 0 0 55 5 00 55 0 0 5 33333 3 00 0 7 33333 3 3 7 33 7 3333 0 00000000000 7 0 3 33333 33333333 7 33 00000000 7 0 0 0 0 00 55 0 000000000 0 55 00 0 0 0 0 0 2 0 4 0 44 88 22 22 0 88 88 22 0 6 3 55 55 00 00 000 00 0 0 0 5 0 00 00 0000 0 0 0 00 0000 7 7 3 3 0 0 0000 8 0 2 4 8 6666 4 000 7 000 7 7 7 7 99 6 99 7 5 7 0 777777777 7 7 2 0 5 7 0 6 8 0 22 0 2 5 2 2 5 7 0 00 0 0 0 0 777777 0 77 8 0 2 2 5 2 5 7 3 0 0 0 0 0 0
consensus : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----ATAA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--TTAAATNTNTCAAT---GGAACT-T-AGATGT---TCCGAATAG-A-TAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG-A--ATTTCGAT--CT----T--A-A--ATAA-AT-GAA----AN-AT----AAC--T------GATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--AAT------GAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---AC---TGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TAACANAACC-ATA-----TCTAAACCTTTAGCCATACT--T-TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGTGA--CAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTTA-GCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAACATATGTACA--TACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCGA---T--T---TGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTG-TT-CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAA---C--TTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTA--TCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
Reference ( family-1625 ) : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----ATAANCGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--TTAAATNTNTCAAT---GGAACT-T-AGATGT---TCCGAATAG-A-TAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTTATAACTAGAAAAGTTTGGTTTTACATAAAAGGCG-A--ATTTCGAT--CT----T--A-A--ATAAAAT-GAA----AN-AT----AAC--T------GATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--AAT------GAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-CAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATNTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---AC---TGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TAACANAACCCATA-----TCTAAACCTTTAGCCATACT--T-TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGTGA--CAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTTA-GCTGT--TGCGGCAAGNTATTNGAAAGAATCGTTTTTAAACATATGTACATATACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCGAA--T--T---TGTTAAGT-TTACACGAATAGTTGCA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTG-TTCTTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAA--CC--TTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATANGTTATACACTGAAATCGGATGGTNATCGTCTAT-TCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
gi|1 : ATTTTACACTGTAATATTAGAAGTATTAGAAATAAGATAATTTT--TTTTGTTAAAAAC--CTTT-TAGACCATGATATTCTTTGTTTTACTGAAACGCACCTTGA-TAATCAGATACCAAATGACTCTTTA-ATACTTAATGAAAACTTTGATATATTTTACAGAAATGAACGTTCTAATCATGGAGGGGGGATACTT--ATTTATGTTTCAAATAGTGTTATTCATTCCAGGCGAA-AT--GCCTTGGAAATATTTTGTAAC-GAATCAATTTGGATAAATGTCAAAATCA-----AAAATGAAAATATACTATTAGGTG-TGTTCTATA--GT-CCCAAAAC-CGCAGATACCACGTTTTTCGA-TAACCTGAATGTAAATATTGAGAAGGCCTATGAAACTTCTCAAAA--TATCGTCCTCCTA-GGTGAT-TATAATGAAAAC-ATTCTAAAC-T-CATCATTCCATAA---CCT--GAAAGAC-A-TA-TTAACCTTAAACTCACTT-ATCA-ATATTATAAATGAACCCACCAGA---------AAT-CTAGCCAT----TCT--T-GATCCAATCATTGTACCATATG-------ATATGCCA------------T-AGAAGT---TCCAGCTAACA-TAAGTGAACATAAAGCAACATTTATA----ATATTACCATTCCC---GT----ACGAGCTAAATTCTACATATAAA-AGACAAATATGGTTGTACA-ACAAAGCA-A--ATTTTAAT--CTCCTTT--ATG--ATAAAGTTGAA----TC-AT----A----T------GATTGGGA--C-TGCT-TAATA----AAC-TGCTCTA-TT--AAT------GAA-GCATGC-GACAAGTTTACAT-ATA-TATTTATTGAA-A-T--GG-T-TAAAA-CTTGCATACCATCTAA-A-T-T-AATAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTC------AGAAGTTGGAAAATATCTA--AAAATAAGAGATAGACTAAAG---AAAATTGCAAT-TAAATCAGGTAAGG--CAAATGATGGGTGTAGATATAA-CAATCTAGAAACAAAGTAAATAACATAAAAAAACAAGCTAAAGAAAACTTTTTTAATAATCTGAAAATTTCATTAAACGATTTACAG---TCGAA----CGAT---AAAACAGGTTT-CTGGAAAATCATTAGACATTTTGTT---AAAAATTCAGACTCTGCATCCACATTT-CAACCTCTTTGTAAAACAAATATAAATGGCACT-------AAATATTCTCTTATTTCTTG-CAAAGAAAAGGCTGAGCACCTTAATGACTATTTTACATCTATATCGAC--CCAA-GACGAGATAAATGTCCAACGAC--CAGTATCTACAC-CAAAAACAGATGAGAGTCTTACAAATTTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAAAC---AC---TGTTAATATAAATAA---AGCATGTGGCCATGACTCTATAAGCCATAAGATGTTTAAAGG-GGTAACATAACC-ATA-----TCTAAACATTTAGCCATACT--T-TTTAAC-CGCTC---TCTGGATGAAG---GGATTTATCCTGACGTTTGGAAGATAGCAAAT---GTT-ACACCAATATAT--AAAAAGGTGA--CAAGCCTATA--GCTTCAAACTATAGACCAGTTTCTTTA-CTTA-GCTGT--TGTGGTAAGATATTTGAAAGAATCATTTTTAAACACATGTACA---ACTTT-CTTCTTACAAATAAATT-ATTGTATAAATATCAATCAGGATTTCTACCAAACCATTCAACAACATTT--CAG---TTAGTATACATCTTTCATTATATCTG-CAAAACCTTTGATAGC----AAACAATTTTCATGTATAGTATTCTGTGACATATCGAAGGCTTTTGATCGTGTCTGGCATCAGGGGCTCTTATTCAAACTTAATG-AAATTGGCATTTATGGTACACTACTTAGTTGGTTATCAA--GTTATCTGAAACACAGATCTCAAC-----GTGTTGTTATACAATCATCAGAATCCACTCTTAAGTATATAAA----------TGCAGGTGTTCCCCAAGGATCTGT-CCTTGGACCTCTATTATTTCTAATATATGTTAACGATATCGCTGA---T--TCACTATTAAGT-TTA-ACTAG--GTTGTATGAGG---------ACGATA-GTTCCTTA-TATTAT-TC----TGCAACTTCTACCCAGGATCTTGAAGGTATTATAAACTATGATCTTGAT-ATTATATCTAAATGGTCTAAACAATGGATGGTGAACTTTAATCCG-AACAAACTGAAGCTATGTTCTTCTCTTTAAG--AAAACCTGACAGACTACCTAATGTTAT-ATTTGAAAATACTTATTA--CAATTTGTTCATTCTCATAAACATCTTGGTG-TTACTTTAAGCCATGATGGTAATTG--GTCAACACATATTGAAAGCATATTACTT--TCTGCTTCCAAGACAATACACATTATGAGACACTTAAAATTCACTATTGGAAGAAACGCA-----C--TCAATCAA--ATGTATA---A-ATCGTATGTGCGTCCAATTCTAGAGTATTCTTCATTGGTCTGGGATGGTTG--CACAGT--GCACTTCACAGATTCAA--TAGAAAAACTACAAAACGAAGCAGCACGAATTGTCACAGGACTTACCCGATCAGTATCTATTCAAAAAC--TGTATAATGAATGTGGATGGGAACCACTTA----AAAAGAGAAGAGAAAT-TTAAAAATAT--TACCTTATGTATAATGTATACCATTCAAATATTCCAAGTTATATAAATGATCTTTTCCCACCTCTATTTGGTGCAACAACTGAATACCCACTAA-GAAA-CAGGAATAACTA-TACTACTC----CATACTGTAGAACAGAGATAA-TGCGAAAGTCATGCATTCCCTCTTCTATTTCTCTT---TGGAAT-CAGCTT---GA-TGAAAAAATTAGAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TATGCCAAAATACTAAATTTAAAA---------TACCAC-CATAGTATTCTCA-TGGCAAA-GATGTGTC-TCAGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATTTAAATGCCGATCTTTGTAGAAATCATCTGCACCCATTACCTTTCTGTGAGTGTCAAGAGGTCATAGAAGATGCTGAACACTACTTCTTTAAATGTCCTAAATAAAGCAATCAAAGAC-T----CGTCTTGTTTCAAACAACACGAGCA-TTACATCCATTAAATATTAATCTACTACTGAGTGGAAGTGAAACTATATCTATAGCAGATAAC-TTACTATTGTAGATGCTGTCCATAACTTTATTAAAGATACCCATAGTTT
gi|10 : cgACACCCAC--CCT-----TAAAAAGAACTTTA--GCCGCTGGGGAGGAAACCTANNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NC-ATTTCCAAATGAAAACTCGAAAACTTATTATTCTCTTTCTAATATTATTAT---t
gi|11 : TCTGT---TATATTCTTTATTGATT-AAATAAACATTAATGATATAGATGAT--TAAT---TGTTA----TTACACG--T--TTGTG----GGAACAAGATACGAGACATAAGTTGTTTGTACATCAATCTTCAAATTTTAC---CGAATTAGGAGATGTGTTGAACAATAATTT-GATCGTTATATCAAAGTGAGCAAAACAACAGTTATTG-ATATCAATCCCTAaacaaagtctgaaatagaaga
gi|12 : GAAAAGTATTGTTGTACA-AAAGGGCA-A--ATTTTGAT--CT----TTTA-A--ATA-----GAA----AA-AT----AAT--T------GATACTGA--C-TGGTCTGATATTTTAACATGATGTA-GT--AATATAGATGAA-GCTTGT-GACGTTTTTACTTCAAACTATTTA----G-A-TATGGCT-GAAGA-AT-GTATTCCAAATAA-A-CTT-G-TAATTATTCATCAAAATGA
gi|13 : acatataagcTACCGACTTA-GAAA-TAGTAA-AAATATTGTTATTC----CCAATTGTAGAACAGATGTTA-TGAAAAATGCATGTATTCCATCAGG--TTTCTTTTATACGGAAT-CAACTA---GA-AGACAGTGTAAGAT-CATCTGCATCC-TTTTCAATTGTCAA----ACATGATATG-CGTAGT-CTAAATGGAAA-------------CACACATATTACT-TTA-TGt
gi|14 : AAAATGTTT---GGTTAAT--GTGAAACTTCATAAACATTTAGTTG-T------AA-CTA--ATG-AAAATGGTGTCAA----TA----AACA--------TCGTCGGCTTCAAATAGTATAGATA-GATACTTAAAATCAAATTTATTCCA-----AATTGGAAA--ATAATTATTCGA--AAAT---TATGTTTCATTCCTAAGATCAGTGTTAGAATATACATC
gi|15 : CATGACTCTATAAGCCATACTACGCTTAAAGGTG-TAACAAAACCCATC-----TCTAAACCTTTAGCCATATT--T-TTTAAC-CGCCC---TCTTAATGAAG---GGATTTA----------TGCAAAATAGCAAAT---GTT-TCACATCTATAT-AAAAAAGGTGA--CAAAGCTATA--GTTTCAAACTAAAAAT--ATTTTTTT--CT
gi|16 : AAAGCA-A--ATTTCGAC--TTGC--T--A-A--ATAA--T-AAA----AT-ATCAGAAAC--T------GATTGGAG--CATGCT--GCTA----AAC--GGTACAGTT--GTT------GAG-GCTTGT-GAAATGTTCTCAA-AAA-TATTTAT---A-AGTTTAG-T-CAAAATGT-GTATTCCGTCTAA-A-A-CAA-TAACTGTCC
gi|17 : CCC-AAAGTTTGGAAGGAAGCGTTC---GTATGTGCTATT-TA-CAAGAAAGGAGA--CCCGTCTTTG--GCTAATAATTACAGACCTATTTCACT--TCTA-AGTGTATTG-AACAAAGTATTTGAAAGGCTCGTTTTTAAGCATATGTTCAATTATTTT
gi|18 : tatATC-CTATTTTCTTT----TTGC-AACT----ACTGCTT-TAAGTAGAAAAGTTTGGTTT---ATAAAAAACGTG--ATTACGATAATT----T--G-A--ATGACAT-GAT----AC-AT----AAC--T------
gi|2 : atcATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCAC-TTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCATT---TCAAAAAGAAGATTAGACTTAGAA-TGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTA-GGTGATAT-TAACGAAGACCATT-TAAATAC-TAACA----ATAATCGTCTTAGAAATACTA-TACTTA---TTAA-C-AATTTGACAA-ATGTCATTACAGAACTAACCAGAGCAA--CTGAAA-CTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATTTAAATGTCTCAATTCTGGAACT-TTAGATGT---TCCGAATAG-AATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAAAAAAGTTTGGTTTTATATAAGAGGTG-A------------------T--A-ATGACAAAAT-GAATGACATGAT----AAC--TTACTTTGATTGGGA-----GTT-TATT---------TCCTATA-TTTCCAT------AAACGCA-GA-AACAATCTTAGAT-------TTTAT---G-----------CAAAA-AT-GTATTCCCTCCAATG-A-T-A-TAACCATCAGACCTACTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCC-C--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCTAATATTATTATAACTAAGTCTAAAAGAGAAGATACGATTAATATCCTTGACA--CTAA-C---ACATCTGTTAGGAATGATAA---A------------------ATAAGTCACAAA--GTTTGAAGT-A-TA-CAGAAT--ATAGTAATTCTAAACCTCTTG---TACTGTTATTTAAT-AGATCA--TTT--ATCAAATGTGAATTT-CCA-GATTTATGGAAATCAGC---CCTAGTA-ATGCCACTTT-TCAAAAAAGGTAAAACAAACCT--G--GCGTCTAATTATCGACCAATTTCACT--CTTAAGCTGT--ATTGGCAAGTTAATGGAAAGAATTGTGTACAAACATATATATATATACTTTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATATT----ATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAAA---CAAACGTGAACAAAGAGTATTTATATGTAAT----AGTATT---TCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTAT-TAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAAT--T---TGTTAAGTATTACATGAATAGTTGCA----G---------ATGATACATCTCTTGCTTTTACATC----TTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTTT--TAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAA-TCATGATGGAAAATG-CATCAACACATA----AATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAAATCTC--TTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACTGGTTTGACGCGTTCTGTTTCTAT--AAATATGTTATACACTGAAATCGGATGGTTATCG-CTA--TCAGAA-AGAAT-AAAATATCAAAAATATATTA--TTGCATATAAACTTAAAACTGGAATTCTACCCGATTATTTATTTTCTCTTTTTCCAGAAACAGTAGGAGTAAATACACCTTA-CAACTTACGAAATTCTTCC-GATTA-TGTTGTTTTCAACACA----AGAACACAACTAATTGC-AAATTCGTTTATTCCGTCATGCGTATCTATT---TGGAATACA-CTTCCCGA-GTACATTTGTAACT-CAGA-GACTTTA---TCAATTTTTAAAACT-CA---TATAACA-AACATTTATTTTAAAACGCAAATGGTACCAT-CGTA-TAATCTAACTGGTAGTCGA-ATTTCATCAGTTTCCCACG-ATCGTTTGAGAAACGGATGTAGTCATCTCAAttaatctggagtttatttacactatttcc
gi|2 : ctAAAAGACGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAACGACTT----CGCCTTTTT-CGTTCCACACG-CCGTTTTCATCCCTTAAGTAgtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaaaaagacgccgagcgctactttatgcaatgttctatatatactgatgaacgacttcgcctttttcgttccacacgccgttttcatcccttaagta
gi|20 : ctattctacatattaatatccgaagtattcgaaacaagtttaactacataaaaaataactttatggattttgatatactttgttttactgcaactcacttaactgatgaaattgcaaatatagatattaatttagatggttttccagacctagtggtattttaatctatgcttcaaatcatctcatttcaaaaagaagattagacttagaatgtccgttaactgattctgtttgtgttgaagtcgggtacaagagggaccgatttttttatgtgctgtgtataccgttccccgaacacgcctgtagcattttggaatatttttaacacatgtattgaaaaagctcttgttttgtcaaaaaatatagttttagtaggtgatattaacgaagaccatttaaatactaacaataatcgtcttagaaatactatacttattaacaatttgacaaatgtcattacagaactaaccagagcaactgaaactacatcaactctgatagatccaatacttatatcagatacatttaaatgtctcaattctggaactttagatgttccgaatagaataagcgaccataaagctacttatatttatatcccattttctctgtttacacctcctgctttaactaaaaaagtttggttttatataagaggtgataatgacaaaatgaatgacatgataacttactttgattgggagtttatttcctatatttccataaacgcagaaacaatcttagattttatgcaaaaatgtattccctccaatgatataaccatcagacctactgacaagccatggtacaactctctgaaagcagacggactactagactacgagacagataaaggacaaaatcaatacaaacgcaaagaacagacgactggactaaatacaaacagttaagaaacaaagtaaataatttgaaaacgcatgctagagaacagtactttaataatatagaaactttagtttcaggcatcaaaactacaattccaaacctttactggaaacttcttaaacagattatttaggaaaacaaaaatactgaaaccataccccccttaaaaagaacctcagacactggggaggaaacctacttttataacgacgaagaaaaggcaaattgtttgaacgactatttcatttctatttcaacaatcagtaatgaaacgaatattacatttcaaaatgaaaactcgaaaactaataattttctttctaatattattataactaagtctaaaagagaagatacgattaatatccttgacactaacacatctgttaggaatgataaaataagtcacaaagtttgaagtatacagaatatagtaattctaaacctcttgtactgttatttaatagatcatttatcaaatgtgaatttccagatttatggaaatcagccctagtaatgccacttttcaaaaaaggtaaaacaaacctggcgtctaattatcgaccaatttcactcttaagctgtattggcaagttaatggaaagaattgtgtacaaacatatatatatatacttttcttgttgataataacctcatttataagttacaatctggatctctgaaaggacattccacagtttaccaacttttagatatattatcaaatttgtcaaggcatagtgaataaacaatacacttgtatggtattttgtgatgtagcgaaagcatttgatcgcgtgtggttgaaaggtcttttgttcaaattaaagcaaaatggtataaatggtagtcttcttaattggatcgacagttatttaaacaaacgtgaacaaagagtatttatatgtaatagtatttccgaaataaaaaaacaaaaaaaactgccggagttccccaatgttctgtattagctcctttattcttttaaatttacattaatgatttagccgaaaatttgttaagtattacatgaatagttgcagatgatacatctcttgcttttacatcttcaaatttaatagatttagaaggtataatcaataatgatctgatcgttatatcaaagtgggcaaaacaatggttagtgaattttaatccccaaaagactgaagctatactttttactctaaatagaaatgtttcaaatccaaatttattgtttgaaaatgttttagttaatttgtagaacaccgtaatcatttaggtatttcttttaatcatgatggaaaatgcatcaacacataaataatattgtttcatcagcttcaaatattttaggcatgatgcgaaaaatcaaatttactcttaatcgcaaatctcttaaccaaatatatatatatatatcatttttgctaccagtttttgaatatgcatcaattgtttttgataattgttcccaatatgaaaaagacaaactagaaaaaatacaacacaaagcagctagagtggttactggtttgacgcgttctgtttctataaatatgttatacactgaaatcggatggttatcgctatcagaaagaataaaatatcaaaaatatattattgcatataaacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaagaacacaactaattgcaaattcgtttattccgtcatgcgtatctatttggaatacacttcccgagtacatttgtaactcagagactttatcaatttttaaaactcatataacaaacatttattttaaaacgcaaatggtaccatcgtataatctaactggtagtcgaatttcatcagtttcccacgatcgtttgagaaacggatgtagtcatctcaagtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaAAAGGC-TGATATGTCATTTTCCTGACAACTCGAACA-CTACATCCGTTAGATATTAATTTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACAT
gi|22 : aatCGAGCA-TTACATCCGTTAAATATTA-TCTACTACTGA-------------------------AGATAATATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
gi|23 : AAGCAGCTAGAGTAAATACCGGTTTGACGTGTTTAGTTGCTGT--AGATAAGTTAT------AAATCAGATGGTAATCG-CTA--TCAGAA-AGAAGAA
gi|24 : TTACAGGATTAACTCGTTCTGTGTCTATTCAA--AAATTGTATACAGAAATCGGGTGGCT---GTCTTTGTCAGAG-AGAAG-AAAATAT
gi|25 : TTGCTAT---T---TC------AGAAAAT--GAT--ATATC--TGAAATTATAA-CCAAAC---T--TGATACATATAAGCCA---CGTGATCATTACTCTATAAGTCA
gi|27 : tGTAATAATCTAAATGCGGATTTATGTAGAACTCATCTGCATCCTACTCCGTTCTGTGAGTGTCAAGCGGTTATAGAA
gi|29 : cTGTTTCTAT--AAATAACTTATACACTGAAATCAGATGGTTATC-TCTA--TCAGAA-AGAAGAAAta
gi|3 : -AATTA-TATTACCC----CATATTGTAGAACAAAGATAA-TGCGGAAGTCGTGCATTCC-TCTCTCATTACTTTT---GGGAAT-CAGCTA---AAATGTCAATATTAAAAACAGC-GCCTTCACTTTCAATCATTAAAATTACAT--CACGACATCATGCTTAATTTAAAA---------TACCAC-CATATTATTATCA-TGACAAACGATGTTTC-TCAGTT-GTCATGCAAAACTT-AGACACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGT---------G--AAGA---TATAGAAGAct
gi|30 : GCTT---GA-TGACAATATTAAAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TACagtgaacata
gi|31 : tcACGAGTA-TGACACCAGTTAGATATGAACATACTAGGGAGTGGAAGTGAAATTCTA
gi|5 : actAAAAACATAATATTATTAAGGTG---T-T------GACCTTT-TAAAC-CCTAATT----GTCAACACCTTAATAATGT-AATG-TTG---TTAAAT-AATCT-ATGCTGTGTTATGACAGAACCTACCCGAA--ATAC-AAGGGCCA--CA-CA-----GATAGATCCAATTATTGTATCCGATTCTATTAAATCATTAAATGAAGGAACTAT-AAATGTACCTTCGAAT-----TAAGCGACCTTAAATCTAC--TTTTATTGTTTTTC-C---TTTTTCTGTTATTCT-AACT----CTTGC
gi|6 : -AATTA-TACTACTC----CATATTGTAAAATAGAGATAA-TGAGAAAGTTTTGCATTCCCTCTACCATTTCTCTT---TGAAAT-CAGCTT---GA-TGACAATATTAATG-CAGC-GCCTTCAC-TTCAATCTTTAAAGATACAT--TACGCCATATTACTAAATCTAAAA---------TACCAC-CATGTTAATCTCA-TGGCAAA-----------CAATTTGTCATGCAAGATTT-AGAAACAACTTTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATTCAT
gi|7 : GGAAT-CAGCTT---GG-TGACAATATTAAAG-CTGC-GTCTTCATATTCAGTCTTTAAAAATACAT--TACGCCATAATAATAAATACAAAA---------TACCGC-CGTATCAATCTCA-TGACAAACGATGTGTC-TCGGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCTCCCATCACCGTTCTGTCAGTGTC---AGGTTATAGAAGATACCGA
gi|8 : T--T-TATAACATGGTCAGTTCTGGATG--G---GTGTGTACCT-GATGATTGGCATCTTGCCAAT---GTA-GCACCAGTAT-TCAAAAAAGGTGA--GAAG--TATGATGCTGCCAATAACAGACCAGTCTCCCTCACTT--GCATT--TGCTGCAAG
gi|9 : aagctgctgaccctgacactatcagtacacactccaagaatgtaggaaaaagatcagcccatcatttccactaTC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAGAAATGTTTGGTTTTATATAAGAGGTG-ATTATGACAAA--C-----T--G-A--ATGACAT-GAT----AA-AT----AACTTT------GATTTTGAATT-TATT-TCCTA----TAT-T--TCCA-TA--AAC------GCA-GCGGGTAAACGTTTTT-CAG-AAA-CAATTTT---AGA-TTTTA-TGAAAAA-AT-GTATTCCCTCCAA-AGA-T-A-TAACCATCAGACCTACTGtccctggagcacactat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TATCAGATATATATAAACCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGTAATAATGATAAATTGAATGATATGATACATAACTTTGATTGCGAGTTTATTTCCACCAATGTCATAAACGCAGCTTGTGAATATTTTTCAAAAACAATTTTAAATTTTATGCAA
Unaligned ( gi|19 ): AATTTAGCATTATTTTATGTTTAAAGTTACTACTAATCTTGTCCCTTGCTATATTAATGACTTAATTCCAACATATGTTGGTGAGACAACACAATACTCACTTAGAAAAAGAAACA
Unaligned ( gi|21 ): TCAAACAAATATAAAGAGATATATAATTCAAATTAGGTAATTGTCAGTTTTATAAATTCACATTATTAAGCTTTACATGTTATGTTCGGAAATAA
Unaligned ( gi|26 ): TAATCGTAAGGTATGGTTTTATAAACGAGGAGACTTTGATAAATTGAATAAAAGAATCTCTAATACTAATTGGGATTTTATT
Unaligned ( gi|28 ): GAGCTGATTATGACAAACTGAATGACATGATACATAACTTTGATTTGGAAGTTTATTTGCTACATTTCCATAAACG
Unaligned ( gi|32 ): TAAAGCTGCTGTTCCTGATAATATCAGTGCACACTTACTCGAAGAATGCAAGAA
Alignments
lowQualScore : 22222 11 11 1 1 1 222222 1 1 222222 1 333333333 44444444444 11 222 1 11 1 1 333333 22222 1 11 11 1 1 222 1 111 1 222222222 1 333333333333333333333 111111 222 111 222222 88888888888888888888888888888 777777777777777777777777777777 222 33333 11 111 111 1111 1 1 1111 44444444444444 2222 2222222222222222 3333333333333333333333333333333333333333333 11 111111 55555555555555555 222222222 222222 333333 11 1 222 11 1 222 11 1 3333333 1 222 2222 222 222 1 222 2222 33333 11 2222 11 1 11 1 555555555555555 11 11 3333333333 5555555555555 111 222 3333333333 1111 11 222 111 11111111111 2222222 111 222 11 11 11 11 11 11 333333 1 1 1 11 11 222 1 2222 1 22222 2222 1 1 11 11 222 22222 2222 222 4444444444 333 1 55555555 1111 777777777777777777777777 1 2222 2222 1 1 11 11 1 1 22222 4444 1 22 2222 11111111111 33333 55555555 11 11111111 11 222222222 11 11 22 22 1 11 11 1 1 1111 111 111 222222222 1 333333 1 2
lowQualScore : 22 1 1 77777 88 1 1 88 5 1 1 1 1 5 5 1 22 999999 5 5 999999 1 5 1 888888888 11111111111 88 2 1 111 1 1 5 88 1 5 33 5 1 1 000000 66666 1 333 1 1 1 5 66 77 5 2 5 22 1 000 1 5 1 1 1 1 999 1 7 1 1 3 555555555 6 3 333333333333333333333 7 888888 333 666 111111 1 1 33333333333333333333333333333 7 1 222222222222222222222222222222 333 66666 88 999 8 3 0 111 8 1 7777 0 44 1 11 1 0 8888 66 66666666666666 5555 3 77 0000000000000000 9999999999999999999999999999999999999999999 8 66 22 22 6 444444 00000000000000000 8 8 1 333333333 1 1 1 1 1 999999 1 1 000000 88 1 1 5 000 88 5 000 88 2 22 5 1 1 2 1 1 1 1 1 2222222 5 000 4444 000 1 000 5 1 1 22 111 22 1 1 1 1111 33333 1 1 88 1 0 6 22 2222 1 1 1 1 1 33 0 88 3 7 7 1 1 1 111111111111111 7 88 88 7 1111111111 6 111 2222222222222 2 222 222 7 1 4444444444 6 4444 00 1 999 99 3 777 0 55555555555 22 7777777 000 1 6 111 11 8 6 11 1 1 1 1 1 99 33 33 00 1 555555 5 1 22 1 5 5 22 1 22 1 1 88 88 111 5 4444 1 5 66666 4444 1 1 1 1 1 1 333 1 5 1 5 1 22 22 1 88 88 111 2 1 77777 22 3333 1 000 2 1 1 1111111111 1 1 1 1 888 1 1 2 0 0 0 22222222 8888 6 444444444444444444444444 77 22 2 7 8888 7777 1 1 3 6 0 7 2 1 1 88 2 22 88 1 5 5 88888 7 22 1 0 2222 3 7 6 55 6 8888 1 11111111111 3 1 7 33333 33333333 0 88 44444444 0 1 1 1 1 22 88 1 444444444 1 88 88 1 1 1 1 1 0 1 1 1 55 66 1 22 1 1 66 0 8 0 7 88 77 22 22 333 22 1 1 1 2 1 22 22 4444 1 1 1 22 4444 6 3 3 3 8 8 7777 3 8 3 1 8 6666 1 444 6 000 5 5 5 0 66 1 77 6 3 1 1 666666666 6 0 3 1 2 6 0 5 3 8 22 8 3 2 3 3 2 0 1 22 1 1 1 1 222222 2 44 0 8 3 0 2 0 2 6 7 1 1 1 1 1 1
lowQualScore : .. . . ..... .. . . .. . . . . . . . . .. ...... . . ...... . . . ......... ........... .. . . ... . . . .. . . .. . . . ...... ..... . ... . . . . .. .. . . . .. . ... . . . . . . ... . . . . . ......... . . ..................... . ...... ... ... ...... . . ............................. . . .............................. ... ..... .. ... . . . ... . . .... . .. . .. . . .... .. .............. .... . .. ................ ........................................... . .. .. .. . ...... ................. . . . ......... . . . . . ...... . . ...... .. . . . ... .. . ... .. . .. . . . . . . . . . ....... . ... .... ... . ... . . . .. ... .. . . . .... ..... . . .. . . . .. .... . . . . . .. . .. . . . . . . ............... . .. .. . .......... . ... ............. . ... ... . . .......... . .... .. . ... .. . ... . ........... .. ....... ... . . ... .. . . .. . . . . . .. .. .. .. . ...... . . .. . . . .. . .. . . .. .. ... . .... . . ..... .... . . . . . . ... . . . . . .. .. . .. .. ... . . ..... .. .... . ... . . . .......... . . . . ... . . . . . . ........ .... . ........................ .. .. . . .... .... . . . . . . . . . .. . .. .. . . . ..... . .. . . .... . . . .. . .... . ........... . . . ..... ........ . .. ........ . . . . . .. .. . ......... . .. .. . . . . . . . . . .. .. . .. . . .. . . . . .. .. .. .. ... .. . . . . . .. .. .... . . . .. .... . . . . . . .... . . . . . .... . ... . ... . . . . .. . .. . . . . ......... . . . . . . . . . . .. . . . . . . . . .. . . . . ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 00 0 0 55555 55 0 0 55 5 0 0 0 0 0 0 0 00 555555 0 0 555555 0 5 0 000000000 55555555555 55 5 0 000 0 0 0 55 0 5 55 5 0 0 000000 00000 0 000 0 0 0 0 00 55 5 5 5 00 0 555 0 5 0 0 0 0 555 0 3 0 0 3 000000000 7 3 333333333333333333333 3 000000 333 000 000000 0 0 33333333333333333333333333333 3 0 000000000000000000000000000000 333 77777 33 777 0 2 8 888 0 0 0000 0 22 4 44 4 6 5555 88 55555555555555 7777 7 77 5555555555555555 2222222222222222222222222222222222222222222 0 66 66 00 0 666666 00000000000000000 0 0 0 000000000 0 0 0 0 0 555555 0 0 555555 00 0 0 0 555 00 5 555 55 5 00 5 0 0 5 0 0 0 0 0 5555555 5 555 0000 555 0 555 5 0 0 00 000 00 0 0 0 7777 33333 0 0 33 0 7 7 00 7777 0 0 0 0 0 00 7 33 3 3 3 0 0 0 222222222222222 3 33 33 3 0000000000 7 777 7777777777777 5 000 000 3 0 3333333333 7 8888 22 0 222 00 2 555 2 00000000000 44 0000000 888 0 0 444 00 2 0 00 0 0 4 0 0 00 22 88 88 0 000000 5 0 00 0 0 0 00 0 00 0 0 00 00 000 5 0000 0 5 55555 0000 0 0 0 0 0 0 000 0 0 0 0 0 00 00 0 55 00 000 5 0 00000 00 5555 0 555 5 0 0 5555555555 0 0 0 0 777 0 0 0 7 7 7 00000000 0000 7 000000000000000000000000 33 00 0 3 3333 0000 0 0 3 7 7 3 0 0 0 55 5 00 55 0 0 5 33333 3 00 0 7 7777 3 3 7 33 7 3333 0 00000000000 7 0 3 33333 00000000 7 33 00000000 7 0 0 0 0 00 55 0 000000000 0 55 00 0 0 0 0 0 2 0 4 0 44 44 4 22 0 4 88 8 0 6 3 55 55 00 00 000 00 0 0 0 5 0 00 00 0000 0 0 0 00 0000 7 7 3 3 0 0 0000 8 0 2 4 8 6666 4 000 7 000 7 7 7 7 99 6 99 7 5 7 0 777777777 7 7 2 0 5 7 0 6 8 0 22 0 2 5 2 2 5 7 0 00 0 0 0 0 777777 0 77 8 0 2 2 5 2 5 7 3 0 0 0 0 0 0
consensus : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--TTAAATNTNTCAAT---GGAACT-T-AGATGT---TCCGAATAG-A-TAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG-A--ATTTCGAT--CT----T--A-AATGA-A--TGANAN-AT----AAC--T------GATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--AAT------GAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---AC---TGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TAACANAACC-ATA-----TCTAAACCTTTAGCCATACT--T-TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGTGA--CAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTTA-GCTG--TTGCGGCAAGNTATTTGAAAGAATCGTTTTTAAACATATGTACA--TA--CTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCGA---TT-ACTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
Reference ( family-1625 ) : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--TTAAATNTNTCAAT---GGAACT-T-AGATGT---TCCGAATAG-A-TAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG-A--ATTTCGAT--CT----T--A-AATAA-A--TGAAAN-AT----AAC--T------GATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--AAT------GAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---AC---TGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TAACANAACC-ATA-----TCTAAACCTTTAGCCATACT--T-TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGTGA--CAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTTA-GCTG--TTGCGGCAAGNTATTTGAAAGAATCGTTTTTAAACATATGTACA--TA--CTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCGA---TT---TGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
gi|1 : ATTTTACACTGTAATATTAGAAGTATTAGAAATAAGATAATTTT--TTTTGTTAAAAAC--CTTT-TAGACCATGATATTCTTTGTTTTACTGAAACGCACCTTGA-TAATCAGATACCAAATGACTCTTTA-ATACTTAATGAAAACTTTGATATATTTTACAGAAATGAACGTTCTAATCATGGAGGGGGGATACTT--ATTTATGTTTCAAATAGTGTTATTCATTCCAGGCGAA-AT--GCCTTGGAAATATTTTGTAAC-GAATCAATTTGGATAAATGTCAAAATCA-----AAAATGAAAATATACTATTAGGTG-TGTTCTATA--GT-CCCAAAAC-CGCAGATACCACGTTTTTCGA-TAACCTGAATGTAAATATTGAGAAGGCCTATGAAACTTCTCAAAA--TATCGTCCTCCTA-GGTGAT-TATAATGAAAAC-ATTCTAAAC-T-CATCATTCCAT-AA-C--CT--GAAAGAC-A-TA-TTAACCTTAAACTCACTT-ATCA-ATATTATAAATGAACCCACCAGA---------AAT-CTAGCCAT----TCT--T-GATCCAATCATTGTACCATATG-------ATATGCCA------------T-AGAAGT---TCCAGCTAACA-TAAGTGAACATAAAGCAACATTTATA----ATATTACCATTCCC---GT----ACGAGCTAAATTCTACATATAAA-AGACAAATATGGTTGTACA-ACAAAGCA-A--ATTTTAAT--CTCCTTT--ATGATAA-AGTTGAATC-AT----A----T------GATTGGGA--C-TGCT-TAATA----AAC-TGCTCTA-TT--AAT------GAA-GCATGC-GACAAGTTTACAT-ATA-TATTTATTGAA-A-T--GG-T-TAAAA-CTTGCATACCATCTAA-A-T-T-AATAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTC------AGAAGTTGGAAAATATCTA--AAAATAAGAGATAGACTAAAG---AAAATTGCAAT-TAAATCAGGTAAGG--CAAATGATGGGTGTAGATATAA-CAATCTAGAAACAAAGTAAATAACATAAAAAAACAAGCTAAAGAAAACTTTTTTAATAATCTGAAAATTTCATTAAACGATTTACAG---TCGAA----CGAT---AAAACAGGTTT-CTGGAAAATCATTAGACATTTTGTT---AAAAATTCAGACTCTGCATCCACATTT-CAACCTCTTTGTAAAACAAATATAAATGGCACT-------AAATATTCTCTTATTTCTTG-CAAAGAAAAGGCTGAGCACCTTAATGACTATTTTACATCTATATCGAC--CCAA-GACGAGATAAATGTCCAACGAC--CAGTATCTACAC-CAAAAACAGATGAGAGTCTTACAAATTTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAAAC---AC---TGTTAATATAAATAA---AGCATGTGGCCATGACTCTATAAGCCATAAGATGTTTAAAGG-GGTAACATAACC-ATA-----TCTAAACATTTAGCCATACT--T-TTTAAC-CGCTC---TCTGGATGAAG---GGATTTATCCTGACGTTTGGAAGATAGCAAAT---GTT-ACACCAATATAT--AAAAAGGTGA--CAAGCCTATA--GCTTCAAACTATAGACCAGTTTCTTTA-CTTA-GCTG--TTGTGGTAAGATATTTGAAAGAATCATTTTTAAACACATGTACA---A--CTTT-CTTCTTACAAATAAATT-ATTGTATAAATATCAATCAGGATTTCTACCAAACCATTCAACAACATTT--CAG---TTAGTATACATCTTTCATTATATCTG-CAAAACCTTTGATAGC----AAACAATTTTCATGTATAGTATTCTGTGACATATCGAAGGCTTTTGATCGTGTCTGGCATCAGGGGCTCTTATTCAAACTTAATG-AAATTGGCATTTATGGTACACTACTTAGTTGGTTATCAA--GTTATCTGAAACACAGATCTCAAC-----GTGTTGTTATACAATCATCAGAATCCACTCTTAAGTATATAAA----------TGCAGGTGTTCCCCAAGGATCTGT-CCTTGGACCTCTATTATTTCTAATATATGTTAACGATATCGCTGA---TTCACTATTAAGT-TTA-ACTAG--GTTGTATGAGG---------ACGATA-GTTCCTTA-TATTAT-TC----TGCAACTTCTACCCAGGATCTTGAAGGTATTATAAACTATGATCTTGAT-ATTATATCTAAATGGTCTAAACAATGGATGGTGAACTTTAATCCG-AACAAACTGAAGCTATGTTCTTCTCTTTAAG--AAAACCTGACAGACTACCTAATGTTAT-ATTTGAAAATACTTATTA--CAATTTGTTCATTCTCATAAACATCTTGGTGTTA-CTTTAAGCCATGATGGTAATTG--GTCAACACATATTGAAAGCATATTACTT--TCTGCTTCCAAGACAATACACATTATGAGACACTTAAAATTCACTATTGGAAGAAACGCA--------CTCAATCAA--ATGTATA---A-ATCGTATGTGCGTCCAATTCTAGAGTATTCTTCATTGGTCTGGGATGGTTG--CACAGT--GCACTTCACAGATTCAA--TAGAAAAACTACAAAACGAAGCAGCACGAATTGTCACAGGACTTACCCGATCAGTATCTATTCAAA--AACTGTATAATGAATGTGGATGGGAACCACTTA--AAAAGAGAAGAGAAAT-TTAAAAATAT--TACCTTATGTATAATGTATACCATTCAAATATTCCAAGTTATATAAATGATCTTTTCCCACCTCTATTTGGTGCAACAACTGAATACCCACTAA-GAAA-CAGGAATAACTA-TACTACTC----CATACTGTAGAACAGAGATAA-TGCGAAAGTCATGCATTCCCTCTTCTATTTCTCTT---TGGAAT-CAGCTT---GA-TGAAAAAATTAGAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TATGCCAAAATACTAAATTTAAAA---------TACCAC-CATAGTATTCTCA-TGGCAAA-GATGTGTC-TCAGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATTTAAATGCCGATCTTTGTAGAAATCATCTGCACCCATTACCTTTCTGTGAGTGTCAAGAGGTCATAGAAGATGCTGAACACTACTTCTTTAAATGTCCTAAATAAAGCAATCAAAGAC-T----CGTCTTGTTTCAAACAACACGAGCA-TTACATCCATTAAATATTAATCTACTACTGAGTGGAAGTGAAACTATATCTATAGCAGATAAC-TTACTATTGTAGATGCTGTCCATAACTTTATTAAAGATACCCATAGTTT
gi|10 : cgACACCCAC--CCT-----TAAAAAGAACTTTA--GCCGCTGGGGAGGAAACCTANNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NC-ATTTCCAAATGAAAACTCGAAAACTTATTATTCTCTTTCTAATATTATTAT---t
gi|11 : TCTGT---TATATTCTTTATTGATT-AAATAAACATTAATGATATAGATGA---TTAATTGTTA----TTACACG--T--TTGTG----GGAACAAGATACGAGACATAAGTTGTTTGTACATCAATCTTCAAATTTTAC---CGAATTAGGAGATGTGTTGAACAATAATTT-GATCGTTATATCAAAGTGAGCAAAACAACAGTTATTG-ATATCAATCCCTAaacaaagtctgaaatagaaga
gi|12 : GAAAAGTATTGTTGTACA-AAAGGGCA-A--ATTTTGAT--CT----TTTA-AATA------GAAAA-AT----AAT--T------GATACTGA--C-TGGTCTGATATTTTAACATGATGTA-GT--AATATAGATGAA-GCTTGT-GACGTTTTTACTTCAAACTATTTA----G-A-TATGGCT-GAAGA-AT-GTATTCCAAATAA-A-CTT-G-TAATTATTCATCAAAATGA
gi|13 : acatataagcTACCGACTTA-GAAA-TAGTAA-AAATATTGTTATTC----CCAATTGTAGAACAGATGTTA-TGAAAAATGCATGTATTCCATCAGG--TTTCTTTTATACGGAAT-CAACTA---GA-AGACAGTGTAAGAT-CATCTGCATCC-TTTTCAATTGTCAA----ACATGATATG-CGTAGT-CTAAATGGAAA-------------CACACATATTACT-TTA-TGt
gi|14 : AAAATGTTT---GGTTAAT--GTGAAACTTCATAAACATTTAGTTGT-------AA-CTA--ATG-AAAATGGTGTCAA----TA----AACA--------TCGTCGGCTTCAAATAGTATAGATA-GATACTTAAAATCAAATTTATTCCA-----AATTGGAAAATA---ATTATTCGA--AAAT---TATGTTTCATTCCTAAGATCAGTGTTAGAATATACATC
gi|15 : CATGACTCTATAAGCCATACTACGCTTAAAGGTG-TAACAAAACCCATC-----TCTAAACCTTTAGCCATATT--T-TTTAAC-CGCCC---TCTTAATGAAG---GGATTTA----------TGCAAAATAGCAAAT---GTT-TCACATCTATAT-AAAAAAGGTGA--CAAAGCTATA--GTTTCAAACTAAAAAT--ATTTTTTT--CT
gi|16 : AAAGCA-A--ATTTCGAC--TTGC--T--A-AATAA----TAAAAT-ATCAGAAAC--T------GATTGGAG--CATGCT--GCTA----AAC--GGTACAGTT--GTT------GAG-GCTTGT-GAAATGTTCTCAA-AAA-TATTTAT---A-AGTTTAG-T-CAAAATGT-GTATTCCGTCTAA-A-A-CAA-TAACTGTCC
gi|17 : CCC-AAAGTTTGGAAGGAAGCGTTC---GTATGTGCTATT-TA-CAAGAAAGGAGA--CCCGTCTTTG--GCTAATAATTACAGACCTATTTCACT--TCTA-AGTGTATTG-AACAAAGTATTTGAAAGGCTCGTTTTTAAGCATATGTTCAATTA--TTTT
gi|18 : tatATC-CTATTTTCTTT----TTGC-AACT----ACTGCTT-TAAGTAGAAAAGTTTGGTTT---ATAAAAAACGTG--ATTACGATAATT----T--G-AATGACA--TGATAC-AT----AAC--T------
gi|2 : atcATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCAC-TTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCATT---TCAAAAAGAAGATTAGACTTAGAA-TGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTA-GGTGATAT-TAACGAAGACCATT-TAAATAC-TAACA----AT-AATCGTCTTAGAAATACTA-TACTTA---TTAA-C-AATTTGACAA-ATGTCATTACAGAACTAACCAGAGCAA--CTGAAA-CTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATTTAAATGTCTCAATTCTGGAACT-TTAGATGT---TCCGAATAG-AATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAAAAAAGTTTGGTTTTATATAAGAGGTG-ATAAT---GAC--A--------A-AATGA-A--TGACATGAT----AAC--TTACTTTGATTGGGA-----GTT-TATT---------TCCTATA-TTTCCAT------AAACGCA-GA-AACAATCTTAGAT-------TTTAT---G-----------CAAAA-AT-GTATTCCCTCCAATG-A-T-A-TAACCATCAGACCTACTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCC-C--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCTAATATTATTATAACTAAGTCTAAAAGAGAAGATACGATTAATATCCTTGACA--CTAA-C---ACATCTGTTAGGAATGATAA---A------------------ATAAGTCACAAA--GTTTGAAGT-A-TA-CAGAAT--ATAGTAATTCTAAACCTCTTG---TACTGTTATTTAAT-AGATCA--TTT--ATCAAATGTGAATTT-CCA-GATTTATGGAAATCAGC---CCTAGTA-ATGCCACTTT-TCAAAAAAGGTAAAACAAACCT--G--GCGTCTAATTATCGACCAATTTCACT--CTTAAGCTG--TATTGGCAAGTTAATGGAAAGAATTGTGTACAAACATATATATA--TATACTTTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATATT----ATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAAA---CAAACGTGAACAAAGAGTATTTATATGTAAT----AGTATT---TCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTAT-TAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT---TGTTAAGTATTACATGAATAGTTGCA----G---------ATGATACATCTCTTGCTTTTACATC----TTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTTT--TAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAA-TCATGATGGAAAATG-CATCAACACATA----AATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---ATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACTGGTTTGACGCGTTCTGTTTCTAT--AAATATGTTATACACTGAAATCGGATGGTTATCG-CTATCAGAA-AGAAT-AAAATATCAAAAATATATTA--TTGCATATAAACTTAAAACTGGAATTCTACCCGATTATTTATTTTCTCTTTTTCCAGAAACAGTAGGAGTAAATACACCTTA-CAACTTACGAAATTCTTCC-GATTA-TGTTGTTTTCAACACA----AGAACACAACTAATTGC-AAATTCGTTTATTCCGTCATGCGTATCTATT---TGGAATACA-CTTCCCGA-GTACATTTGTAACT-CAGA-GACTTTA---TCAATTTTTAAAACT-CA---TATAACA-AACATTTATTTTAAAACGCAAATGGTACCAT-CGTA-TAATCTAACTGGTAGTCGA-ATTTCATCAGTTTCCCACG-ATCGTTTGAGAAACGGATGTAGTCATCTCAAttaatctggagtttatttacactatttcc
gi|2 : ctAAAAGACGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAACGACTT----CGCCTTTTT-CGTTCCACACG-CCGTTTTCATCCCTTAAGTAgtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaaaaagacgccgagcgctactttatgcaatgttctatatatactgatgaacgacttcgcctttttcgttccacacgccgttttcatcccttaagta
gi|20 : ctattctacatattaatatccgaagtattcgaaacaagtttaactacataaaaaataactttatggattttgatatactttgttttactgcaactcacttaactgatgaaattgcaaatatagatattaatttagatggttttccagacctagtggtattttaatctatgcttcaaatcatctcatttcaaaaagaagattagacttagaatgtccgttaactgattctgtttgtgttgaagtcgggtacaagagggaccgatttttttatgtgctgtgtataccgttccccgaacacgcctgtagcattttggaatatttttaacacatgtattgaaaaagctcttgttttgtcaaaaaatatagttttagtaggtgatattaacgaagaccatttaaatactaacaataatcgtcttagaaatactatacttattaacaatttgacaaatgtcattacagaactaaccagagcaactgaaactacatcaactctgatagatccaatacttatatcagatacatttaaatgtctcaattctggaactttagatgttccgaatagaataagcgaccataaagctacttatatttatatcccattttctctgtttacacctcctgctttaactaaaaaagtttggttttatataagaggtgataatgacaaaatgaatgacatgataacttactttgattgggagtttatttcctatatttccataaacgcagaaacaatcttagattttatgcaaaaatgtattccctccaatgatataaccatcagacctactgacaagccatggtacaactctctgaaagcagacggactactagactacgagacagataaaggacaaaatcaatacaaacgcaaagaacagacgactggactaaatacaaacagttaagaaacaaagtaaataatttgaaaacgcatgctagagaacagtactttaataatatagaaactttagtttcaggcatcaaaactacaattccaaacctttactggaaacttcttaaacagattatttaggaaaacaaaaatactgaaaccataccccccttaaaaagaacctcagacactggggaggaaacctacttttataacgacgaagaaaaggcaaattgtttgaacgactatttcatttctatttcaacaatcagtaatgaaacgaatattacatttcaaaatgaaaactcgaaaactaataattttctttctaatattattataactaagtctaaaagagaagatacgattaatatccttgacactaacacatctgttaggaatgataaaataagtcacaaagtttgaagtatacagaatatagtaattctaaacctcttgtactgttatttaatagatcatttatcaaatgtgaatttccagatttatggaaatcagccctagtaatgccacttttcaaaaaaggtaaaacaaacctggcgtctaattatcgaccaatttcactcttaagctgtattggcaagttaatggaaagaattgtgtacaaacatatatatatatacttttcttgttgataataacctcatttataagttacaatctggatctctgaaaggacattccacagtttaccaacttttagatatattatcaaatttgtcaaggcatagtgaataaacaatacacttgtatggtattttgtgatgtagcgaaagcatttgatcgcgtgtggttgaaaggtcttttgttcaaattaaagcaaaatggtataaatggtagtcttcttaattggatcgacagttatttaaacaaacgtgaacaaagagtatttatatgtaatagtatttccgaaataaaaaaacaaaaaaaactgccggagttccccaatgttctgtattagctcctttattcttttaaatttacattaatgatttagccgaaaatttgttaagtattacatgaatagttgcagatgatacatctcttgcttttacatcttcaaatttaatagatttagaaggtataatcaataatgatctgatcgttatatcaaagtgggcaaaacaatggttagtgaattttaatccccaaaagactgaagctatactttttactctaaatagaaatgtttcaaatccaaatttattgtttgaaaatgttttagttaatttgtagaacaccgtaatcatttaggtatttcttttaatcatgatggaaaatgcatcaacacataaataatattgtttcatcagcttcaaatattttaggcatgatgcgaaaaatcaaatttactcttaatcgcaaatctcttaaccaaatatatatatatatatcatttttgctaccagtttttgaatatgcatcaattgtttttgataattgttcccaatatgaaaaagacaaactagaaaaaatacaacacaaagcagctagagtggttactggtttgacgcgttctgtttctataaatatgttatacactgaaatcggatggttatcgctatcagaaagaataaaatatcaaaaatatattattgcatataaacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaagaacacaactaattgcaaattcgtttattccgtcatgcgtatctatttggaatacacttcccgagtacatttgtaactcagagactttatcaatttttaaaactcatataacaaacatttattttaaaacgcaaatggtaccatcgtataatctaactggtagtcgaatttcatcagtttcccacgatcgtttgagaaacggatgtagtcatctcaagtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaAAAGGC-TGATATGTCATTTTCCTGACAACTCGAACA-CTACATCCGTTAGATATTAATTTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACAT
gi|22 : aatCGAGCA-TTACATCCGTTAAATATTA-TCTACTACTGA-------------------------AGATAATATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
gi|23 : AAGCAGCTAGAGTAAATACCGGTTTGACGTGTTTAGTTGCTGT--AGATAAGTTAT------AAATCAGATGGTAATCG-CTATCAGAA-AGAAGAA
gi|24 : TTACAGGATTAACTCGTTCTGTGTCTATTCAA--AAATTGTATACAGAAATCGGGTGGCTGTC-TTTGTCAGAG-AGAAG-AAAATAT
gi|25 : TTGCTAT---T---TC------AGAAAAT--GAT--ATATC--TGAAATTATAA-CCAAAC---T--TGATACATATAAGCCA---CGTGATCATTACTCTATAAGTCA
gi|27 : tGTAATAATCTAAATGCGGATTTATGTAGAACTCATCTGCATCCTACTCCGTTCTGTGAGTGTCAAGCGGTTATAGAA
gi|29 : cTGTTTCTAT--AAATAACTTATACACTGAAATCAGATGGTTATC-TCTATCAGAA-AGAAGAAAta
gi|3 : -AATTA-TATTACCC----CATATTGTAGAACAAAGATAA-TGCGGAAGTCGTGCATTCC-TCTCTCATTACTTTT---GGGAAT-CAGCTA---AAATGTCAATATTAAAAACAGC-GCCTTCACTTTCAATCATTAAAATTACAT--CACGACATCATGCTTAATTTAAAA---------TACCAC-CATATTATTATCA-TGACAAACGATGTTTC-TCAGTT-GTCATGCAAAACTT-AGACACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGT---------G--AAGA---TATAGAAGAct
gi|30 : GCTT---GA-TGACAATATTAAAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TACagtgaacata
gi|31 : tcACGAGTA-TGACACCAGTTAGATATGAACATACTAGGGAGTGGAAGTGAAATTCTA
gi|5 : actAAAAACATAATATTATTAAGGTG---T-T------GACCTTT-TAAAC-CCTAATT----GTCAA-CACCTTAATAATGT-AATG-TTG---TTAAAT-AATCT-ATGCTGTGTTATGACAGAACCTACCCGAA--ATAC-AAGGGCCA--CA-CA-----GATAGATCCAATTATTGTATCCGATTCTATTAAATCATTAAATGAAGGAACTAT-AAATGTACCTTCGAAT-----TAAGCGACCTTAAATCTAC--TTTTATTGTTTTTC-C---TTTTTCTGTTATTCT-AACT----CTTGC
gi|6 : -AATTA-TACTACTC----CATATTGTAAAATAGAGATAA-TGAGAAAGTTTTGCATTCCCTCTACCATTTCTCTT---TGAAAT-CAGCTT---GA-TGACAATATTAATG-CAGC-GCCTTCAC-TTCAATCTTTAAAGATACAT--TACGCCATATTACTAAATCTAAAA---------TACCAC-CATGTTAATCTCA-TGGCAAA-----------CAATTTGTCATGCAAGATTT-AGAAACAACTTTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATTCAT
gi|7 : GGAAT-CAGCTT---GG-TGACAATATTAAAG-CTGC-GTCTTCATATTCAGTCTTTAAAAATACAT--TACGCCATAATAATAAATACAAAA---------TACCGC-CGTATCAATCTCA-TGACAAACGATGTGTC-TCGGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCTCCCATCACCGTTCTGTCAGTGTC---AGGTTATAGAAGATACCGA
gi|8 : T--T-TATAACATGGTCAGTTCTGGATG--G---GTGTGTACCT-GATGATTGGCATCTTGCCAAT---GTA-GCACCAGTAT-TCAAAAAAGGTGA--GAAG--TATGATGCTGCCAATAACAGACCAGTCTCCCTCACTT--GCAT--TTGCTGCAAG
gi|9 : aagctgctgaccctgacactatcagtacacactccaagaatgtaggaaaaagatcagcccatcatttccactaTC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAGAAATGTTTGGTTTTATATAAGAGGTG-ATTATGACAAA--C-----T--G-AATGACA--TGATAA-AT----AACTTT------GATTTTGAATT-TATT-TCCTA----TAT-T--TCCA-TA--AAC------GCA-GCGGGTAAACGTTTTT-CAG-AAA-CAATTTT---AGA-TTTTA-TGAAAAA-AT-GTATTCCCTCCAA-AGA-T-A-TAACCATCAGACCTACTGtccctggagcacactat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TATCAGATATATATAAACCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGTAATAATGATAAATTGAATGATATGATACATAACTTTGATTGCGAGTTTATTTCCACCAATGTCATAAACGCAGCTTGTGAATATTTTTCAAAAACAATTTTAAATTTTATGCAA
Unaligned ( gi|19 ): AATTTAGCATTATTTTATGTTTAAAGTTACTACTAATCTTGTCCCTTGCTATATTAATGACTTAATTCCAACATATGTTGGTGAGACAACACAATACTCACTTAGAAAAAGAAACA
Unaligned ( gi|21 ): TCAAACAAATATAAAGAGATATATAATTCAAATTAGGTAATTGTCAGTTTTATAAATTCACATTATTAAGCTTTACATGTTATGTTCGGAAATAA
Unaligned ( gi|26 ): TAATCGTAAGGTATGGTTTTATAAACGAGGAGACTTTGATAAATTGAATAAAAGAATCTCTAATACTAATTGGGATTTTATT
Unaligned ( gi|28 ): GAGCTGATTATGACAAACTGAATGACATGATACATAACTTTGATTTGGAAGTTTATTTGCTACATTTCCATAAACG
Unaligned ( gi|32 ): TAAAGCTGCTGTTCCTGATAATATCAGTGCACACTTACTCGAAGAATGCAAGAA
Alignments
lowQualScore : 22222 11 11 1 1 1 222222 1 1 222222 1 333333333 44444444444 11 222 1 11 1 1 333333 22222 1 11 11 1 1 222 1 111 1 222222222 1 333333333333333333333 111111 222 1 222222 88888888888888888888888888888 8888888888888888888888888888888888 222 333 11 111 111 1111 1 1 11111 44444444444 222222 2222222222222 44444444444444444444444444444444444444444 11 111111 55555555555555555 222222222 222222 333333 11 1 222 11 1 222 11 1 3333333 1 222 2222 222 222 1 222 2222 33333 11 2222 11 1 11 1 555555555555555 11 11 444444444 5555555555555 111 22222 1 111 33333 1111 11 222 111 11111111111 2222222 111 11111 11 11 11 11 111111 11 222 1 1 1 11 11 222 1 2222 1 22222 2222 1 1 11 11 222 22222 2222 222 4444444444 333 1 222 3333 1111 777777777777777777777777 1 2222 2222 1 1 11 11 1 1 22222 4444 1 22 2222 11111111111 33333 55555555 11 11111111 11 222222222 11 11 22 22 1 11 11 1 1 1111 111 111 222222222 1 333333 1 2
lowQualScore : 22 1 1 77777 88 1 1 88 5 1 1 1 1 5 5 1 22 999999 5 5 999999 1 5 1 888888888 11111111111 88 2 1 111 1 1 5 88 1 5 33 5 1 1 000000 66666 1 333 1 1 1 5 66 77 5 2 5 22 1 000 1 5 1 1 1 1 999 1 7 1 1 3 555555555 6 3 333333333333333333333 7 888888 333 7 3 111111 1 1 33333333333333333333333333333 7 1 1111111111111111111111111111111111 333 777 88 999 8 3 0 111 8 1 7777 0 44 1 11 1 0 88888 66 88888888888 6 000000 1 77 9999999999999 99999999999999999999999999999999999999999 8 66 22 22 6 444444 00000000000000000 8 8 1 333333333 1 1 1 1 1 999999 1 1 000000 88 1 1 5 000 88 5 000 88 2 22 5 1 1 2 1 1 1 1 1 2222222 5 000 4444 000 1 000 5 1 1 22 111 22 1 1 1 1111 33333 1 1 88 1 0 6 22 2222 1 1 1 1 1 33 0 88 3 7 7 1 1 1 111111111111111 7 88 88 7 111111111 6 111 2222222222222 2 222 11111 3 1 555 33333 6 4444 00 1 999 99 3 777 0 55555555555 22 7777777 000 1 88888 11 8 11 11 1 1 1 1 1 99 33 888888 1 88 555 5 1 22 1 5 5 22 1 22 1 1 88 88 111 5 4444 1 5 66666 4444 1 1 1 1 1 1 333 1 5 1 5 1 22 22 1 88 88 111 2 1 77777 22 3333 1 000 2 1 1 1111111111 1 1 1 1 888 1 1 2 0 0 0 333 7777 8888 6 444444444444444444444444 77 22 2 7 8888 7777 1 1 3 6 0 7 2 1 1 88 2 22 88 1 5 5 88888 7 22 1 0 2222 3 7 6 55 6 8888 1 11111111111 3 1 7 33333 33333333 0 88 44444444 0 1 1 1 1 22 88 1 444444444 1 88 88 1 1 1 1 1 0 1 1 1 55 66 1 22 1 1 66 0 8 0 7 88 77 22 22 333 22 1 1 1 2 1 22 22 4444 1 1 1 22 4444 6 3 3 3 8 8 7777 3 8 3 1 8 6666 1 444 6 000 5 5 5 0 66 1 77 6 3 1 1 666666666 6 0 3 1 2 6 0 5 3 8 22 8 3 2 3 3 2 0 1 22 1 1 1 1 222222 2 44 0 8 3 0 2 0 2 6 7 1 1 1 1 1 1
lowQualScore : .. . . ..... .. . . .. . . . . . . . . .. ...... . . ...... . . . ......... ........... .. . . ... . . . .. . . .. . . . ...... ..... . ... . . . . .. .. . . . .. . ... . . . . . . ... . . . . . ......... . . ..................... . ...... ... . . ...... . . ............................. . . .................................. ... ... .. ... . . . ... . . .... . .. . .. . . ..... .. ........... . ...... . .. ............. ......................................... . .. .. .. . ...... ................. . . . ......... . . . . . ...... . . ...... .. . . . ... .. . ... .. . .. . . . . . . . . . ....... . ... .... ... . ... . . . .. ... .. . . . .... ..... . . .. . . . .. .... . . . . . .. . .. . . . . . . ............... . .. .. . ......... . ... ............. . ... ..... . . ... ..... . .... .. . ... .. . ... . ........... .. ....... ... . ..... .. . .. .. . . . . . .. .. ...... . .. ... . . .. . . . .. . .. . . .. .. ... . .... . . ..... .... . . . . . . ... . . . . . .. .. . .. .. ... . . ..... .. .... . ... . . . .......... . . . . ... . . . . . . ... .... .... . ........................ .. .. . . .... .... . . . . . . . . . .. . .. .. . . . ..... . .. . . .... . . . .. . .... . ........... . . . ..... ........ . .. ........ . . . . . .. .. . ......... . .. .. . . . . . . . . . .. .. . .. . . .. . . . . .. .. .. .. ... .. . . . . . .. .. .... . . . .. .... . . . . . . .... . . . . . .... . ... . ... . . . . .. . .. . . . . ......... . . . . . . . . . . .. . . . . . . . . .. . . . . ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 00 0 0 55555 55 0 0 55 5 0 0 0 0 0 0 0 00 555555 0 0 555555 0 5 0 000000000 55555555555 55 5 0 000 0 0 0 55 0 5 55 5 0 0 000000 00000 0 000 0 0 0 0 00 55 5 5 5 00 0 555 0 5 0 0 0 0 555 0 3 0 0 3 000000000 7 3 333333333333333333333 3 000000 333 3 3 000000 0 0 33333333333333333333333333333 3 0 0000000000000000000000000000000000 333 777 33 777 0 2 8 888 0 0 0000 0 22 4 44 4 6 55555 88 88888888888 7 333333 0 77 5555555555555 00000000000000000000000000000000000000000 0 66 66 00 0 666666 00000000000000000 0 0 0 000000000 0 0 0 0 0 555555 0 0 555555 00 0 0 0 555 00 5 555 55 5 00 5 0 0 5 0 0 0 0 0 5555555 5 555 0000 555 0 555 5 0 0 00 000 00 0 0 0 7777 33333 0 0 33 0 7 7 00 7777 0 0 0 0 0 00 7 33 3 3 3 0 0 0 222222222222222 3 33 33 3 000000000 7 777 7777777777777 5 000 77777 3 0 333 33333 7 8888 22 0 222 00 2 555 2 00000000000 44 0000000 888 0 44444 00 2 88 00 0 0 4 0 0 00 22 222222 0 33 777 5 0 00 0 0 0 00 0 00 0 0 00 00 000 5 0000 0 5 55555 0000 0 0 0 0 0 0 000 0 0 0 0 0 00 00 0 55 00 000 5 0 00000 00 5555 0 555 5 0 0 5555555555 0 0 0 0 777 0 0 0 7 7 7 333 7777 0000 7 000000000000000000000000 33 00 0 3 3333 0000 0 0 3 7 7 3 0 0 0 55 5 00 55 0 0 5 33333 3 00 0 7 7777 3 3 7 33 7 3333 0 00000000000 7 0 3 33333 00000000 7 33 00000000 7 0 0 0 0 00 55 0 000000000 0 55 00 0 0 0 0 0 2 0 4 0 44 44 4 22 0 4 88 8 0 6 3 55 55 00 00 000 00 0 0 0 5 0 00 00 0000 0 0 0 00 0000 7 7 3 3 0 0 0000 8 0 2 4 8 6666 4 000 7 000 7 7 7 7 99 6 99 7 5 7 0 777777777 7 7 2 0 5 7 0 6 8 0 22 0 2 5 2 2 5 7 0 00 0 0 0 0 777777 0 77 8 0 2 2 5 2 5 7 3 0 0 0 0 0 0
consensus : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--T--TAAATNTNTCAA---TG---GAAC-T-TAGATGT---TCCGAATAG-ATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG--A--ATTTCGAT--C--T----TA-AATGA-A--TGANA-NAT----AAC------TGATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--A------ATGAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---A---CTGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TA-ACANAACC-ATA-----TCTAAACCTTTAGCCATACT-T--TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGT--GACAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTT-AGCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAAC--ATATGTACA--TACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCG---ATT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
Reference ( family-1625 ) : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--T--TAAATNTNTCAA---TG---GAAC-T-TAGATGT---TCCGAATAG-ATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG--A--ATTTCGAT--C--T----TA-AATGA-A--TGANA-NAT----AAC------TGATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--A------ATGAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---A---CTGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TA-ACANAACC-ATA-----TCTAAACCTTTAGCCATACT-T--TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGT--GACAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTT-AGCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAAC--ATATGTACA--TACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCG---ATT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
gi|1 : ATTTTACACTGTAATATTAGAAGTATTAGAAATAAGATAATTTT--TTTTGTTAAAAAC--CTTT-TAGACCATGATATTCTTTGTTTTACTGAAACGCACCTTGA-TAATCAGATACCAAATGACTCTTTA-ATACTTAATGAAAACTTTGATATATTTTACAGAAATGAACGTTCTAATCATGGAGGGGGGATACTT--ATTTATGTTTCAAATAGTGTTATTCATTCCAGGCGAA-AT--GCCTTGGAAATATTTTGTAAC-GAATCAATTTGGATAAATGTCAAAATCA-----AAAATGAAAATATACTATTAGGTG-TGTTCTATA--GT-CCCAAAAC-CGCAGATACCACGTTTTTCGA-TAACCTGAATGTAAATATTGAGAAGGCCTATGAAACTTCTCAAAA--TATCGTCCTCCTA-GGTGAT-TATAATGAAAAC-ATTCTAAAC-T-CATCATTCCAT-AA-C--CT--GAAAGAC-A-TA-TTAACCTTAAACTCACTT-ATCA-ATATTATAAATGAACCCACCAGA---------AAT-CTAGCCAT----TCT--T-GATCCAATCATTGTACCATATG---------ATATGCCA----------------TAGAAGT---TCCAGCTAACATAAGTGAACATAAAGCAACATTTATA----ATATTACCATTCCC---GT----ACGAGCTAAATTCTACATATAAA-AGACAAATATGGTTGTACA-ACAAAGCA--A--ATTTTAAT--C--TCCTTTATGATAA-AGTTGAAT-CAT----A--------TGATTGGGA--C-TGCT-TAATA----AAC-TGCTCTA-TT--A------ATGAA-GCATGC-GACAAGTTTACAT-ATA-TATTTATTGAA-A-T--GG-T-TAAAA-CTTGCATACCATCTAA-A-T-T-AATAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTC------AGAAGTTGGAAAATATCTA--AAAATAAGAGATAGACTAAAG---AAAATTGCAAT-TAAATCAGGTAAGG--CAAATGATGGGTGTAGATATAA-CAATCTAGAAACAAAGTAAATAACATAAAAAAACAAGCTAAAGAAAACTTTTTTAATAATCTGAAAATTTCATTAAACGATTTACAG---TCGAA----CGAT---AAAACAGGTTT-CTGGAAAATCATTAGACATTTTGTT---AAAAATTCAGACTCTGCATCCACATTT-CAACCTCTTTGTAAAACAAATATAAATGGCACT-------AAATATTCTCTTATTTCTTG-CAAAGAAAAGGCTGAGCACCTTAATGACTATTTTACATCTATATCGAC--CCAA-GACGAGATAAATGTCCAACGAC--CAGTATCTACAC-CAAAAACAGATGAGAGTCTTACAAATTTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAAAC---A---CTGTTAATATAAATAA---AGCATGTGGCCATGACTCTATAAGCCATAAGATGTTTAAAGG-GGTA-ACATAACC-ATA-----TCTAAACATTTAGCCATACT-T--TTTAAC-CGCTC---TCTGGATGAAG---GGATTTATCCTGACGTTTGGAAGATAGCAAAT---GTT-ACACCAATATAT--AAAAAGGT--GACAAGCCTATA--GCTTCAAACTATAGACCAGTTTCTTTA-CTT-AGCTGT--TGTGGTAAGATATTTGAAAGAATCATTTTTAAAC--ACATGTACA---ACTTT-CTTCTTACAAATAAATT-ATTGTATAAATATCAATCAGGATTTCTACCAAACCATTCAACAACATTT--CAG---TTAGTATACATCTTTCATTATATCTG-CAAAACCTTTGATAGC----AAACAATTTTCATGTATAGTATTCTGTGACATATCGAAGGCTTTTGATCGTGTCTGGCATCAGGGGCTCTTATTCAAACTTAATG-AAATTGGCATTTATGGTACACTACTTAGTTGGTTATCAA--GTTATCTGAAACACAGATCTCAAC-----GTGTTGTTATACAATCATCAGAATCCACTCTTAAGTATATAAA----------TGCAGGTGTTCCCCAAGGATCTGT-CCTTGGACCTCTATTATTTCTAATATATGTTAACGATATCGCTG---ATTCA-CTATTAAGT-TTA-ACTAG--GTTGTATGAGG---------ACGATA-GTTCCTTA-TATTAT-TC----TGCAACTTCTACCCAGGATCTTGAAGGTATTATAAACTATGATCTTGAT-ATTATATCTAAATGGTCTAAACAATGGATGGTGAACTTTAATCCG-AACAAACTGAAGCTATGTTCTTCTCTTTAAG--AAAACCTGACAGACTACCTAATGTTAT-ATTTGAAAATACTTATTA--CAATTTGTTCATTCTCATAAACATCTTGGTGTTA-CTTTAAGCCATGATGGTAATTG--GTCAACACATATTGAAAGCATATTACTT--TCTGCTTCCAAGACAATACACATTATGAGACACTTAAAATTCACTATTGGAAGAAACGCA--------CTCAATCAA--ATGTATA---A-ATCGTATGTGCGTCCAATTCTAGAGTATTCTTCATTGGTCTGGGATGGTTG--CACAGT--GCACTTCACAGATTCAA--TAGAAAAACTACAAAACGAAGCAGCACGAATTGTCACAGGACTTACCCGATCAGTATCTATTCAAA--AACTGTATAATGAATGTGGATGGGAACCACTTA--AAAAGAGAAGAGAAAT-TTAAAAATAT--TACCTTATGTATAATGTATACCATTCAAATATTCCAAGTTATATAAATGATCTTTTCCCACCTCTATTTGGTGCAACAACTGAATACCCACTAA-GAAA-CAGGAATAACTA-TACTACTC----CATACTGTAGAACAGAGATAA-TGCGAAAGTCATGCATTCCCTCTTCTATTTCTCTT---TGGAAT-CAGCTT---GA-TGAAAAAATTAGAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TATGCCAAAATACTAAATTTAAAA---------TACCAC-CATAGTATTCTCA-TGGCAAA-GATGTGTC-TCAGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATTTAAATGCCGATCTTTGTAGAAATCATCTGCACCCATTACCTTTCTGTGAGTGTCAAGAGGTCATAGAAGATGCTGAACACTACTTCTTTAAATGTCCTAAATAAAGCAATCAAAGAC-T----CGTCTTGTTTCAAACAACACGAGCA-TTACATCCATTAAATATTAATCTACTACTGAGTGGAAGTGAAACTATATCTATAGCAGATAAC-TTACTATTGTAGATGCTGTCCATAACTTTATTAAAGATACCCATAGTTT
gi|10 : cgACACCCAC--CCT-----TAAAAAGAACTTTA--GCCGCTGGGGAGGAAACCTANNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NC-ATTTCCAAATGAAAACTCGAAAACTTATTATTCTCTTTCTAATATTATTAT---t
gi|11 : TCTGT---TATATTCTTTATTGATT-AAATAAACATTAATGATATAGATG---ATT-AATTGTTA----TTACACG--T--TTGTG----GGAACAAGATACGAGACATAAGTTGTTTGTACATCAATCTTCAAATTTTAC---CGAATTAGGAGATGTGTTGAACAATAATTT-GATCGTTATATCAAAGTGAGCAAAACAACAGTTATTG-ATATCAATCCCTAaacaaagtctgaaatagaaga
gi|12 : GAAAAGTATTGTTGTACA-AAAGGGCA--A--ATTTTGAT--CTTT----TA-AATA------GAAA-AAT----AAT------TGATACTGA--C-TGGTCTGATATTTTAACATGATGTA-GT--AATATAGATGAA-GCTTGT-GACGTTTTTACTTCAAACTATTTA----G-A-TATGGCT-GAAGA-AT-GTATTCCAAATAA-A-CTT-G-TAATTATTCATCAAAATGA
gi|13 : acatataagcTACCGACTTA-GAAA-TAGTAA-AAATATTGTTATTC----CCAATTGTAGAACAGATGTTA-TGAAAAATGCATGTATTCCATCAGG--TTTCTTTTATACGGAAT-CAACTA---GA-AGACAGTGTAAGAT-CATCTGCATCC-TTTTCAATTGTCAA----ACATGATATG-CGTAGT-CTAAATGGAAA-------------CACACATATTACT-TTA-TGt
gi|14 : AAAATGTTT---GGTTAAT--GTGAAACTTCATAAACATTTAGTTGT-------AA-CTA--ATG-AAAATGGTGTCAA----TA----AACA--------TCGTCGGCTTCAAATAGTATAGATA-GATACTTAAAATCAAATTTATTCCA-----AATTGGAAAATA---ATTATTCGA--AAAT---TATGTTTCATTCCTAAGATCAGTGTTAGAATATACATC
gi|15 : CATGACTCTATAAGCCATACTACGCTTAAAGGTG-TA-ACAAAACCCATC-----TCTAAACCTTTAGCCATATT-T--TTTAAC-CGCCC---TCTTAATGAAG---GGATTTA----------TGCAAAATAGCAAAT---GTT-TCACATCTATAT-AAAAAAGGT--GACAAAGCTATA--GTTTCAAACTAAAAAT--ATTTTTTT--CT
gi|16 : AAAGCA--A--ATTTCGAC--T--TGC--TA-AAT-A-A--TAAAA-TATCAGAAAC------TGATTGGAG--CATGCT--GCTA----AAC--GGTACAGTT--G------TTGAG-GCTTGT-GAAATGTTCTCAA-AAA-TATTTAT---A-AGTTTAG-T-CAAAATGT-GTATTCCGTCTAA-A-A-CAA-TAACTGTCC
gi|17 : CCC-AAAGTTTGGAAGGAAGCGTTC---GTATGTGCTATT-TA-CAAGAAAGGA--GACCCGTCTTTG--GCTAATAATTACAGACCTATTTCACT--TCT-AAGTGTATTG-AACAAAGTATTTGAAAGGCTCGTTTTTAAGC--ATATGTTCAATTATTTT
gi|18 : tatATC-CTATTTTCTTT----TTGC-AACT----ACTGCTT-TAAGTAGAAAAGTTTGGTTT---ATAAAAAACGT-G--ATTACGATAAT--T----TG-AATGACA--TGATA-CAT----AAC------T
gi|2 : atcATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCA-CTTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCAT---TTCAAAAAGAAGATTAGACTTAG-AATGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTA-GGTGATAT-TAACGAAGACCATT-TAAATAC-TAACA----AT-AATCGTCTTAGAAATACTA-TACTTA---TT-AAC-AATTTGACAA-ATGTCATTACAGAACTAACCAGAGCAA--CTGAAA-CTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATT--TAAATGTCTCAATTCTG---GAACTT-TAGATGT---TCCGAATAGAATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAAAAAAGTTTGGTTTTATATAAGAGGTGATA--AT---GAC--A--------A-AATGA-A--TGACATGAT----AACTTACTTTGATTGGGA-----GTT-TATT---------TCCTATA-TTTCC------ATAAACGCA-GA-AACAATCTTAGAT-------TTTAT---G-----------CAAAA-AT-GTATTCCCTCCAATG-A-T-A-TAACCATCAGACCTACTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCC-C--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCTAATATTATTATAACTAAGTCTAAAAGAGAAGATACGATTAATATCCTTGACA--CTAA-C---ACATCTGTTAGGAATGATAA---A------------------ATAAGTCACAAA--GTTTGAA---G-TATACAGAA-T-ATAGTAATTCTAAACCTCTTG---TACTGTTATTTAAT-AGATCA--TTT--ATCAAATGTGAATTT-CCA-GATTTATGGAAATCAGC---CCTAGTA-ATGCCACT-TTTCAAAAAAGGTAAAACAAACC--TG--GCGTCTAATTATCGACCAATTTCACT--CTTAAGCTGT--ATTGGCAAGTTAATGGAAAGAATTGTGTACAAACATATATATATA--TACTTTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATA----TTATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAA---ACAAACGTGAACAAAGAGTATTTATATGTAAT----AGTAT---TTCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTAT-TAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT----TGTTAAGTATTACATGAATAGTTGCA----G---------ATGATACATCTCTTGCTTTTACATC----TTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTTT--TAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAA-TCATGATGGAAAATG-CATCAACACATA----AATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---ATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACTGGTTTGACGCGTTCTGTTTCTAT--AAATATGTTATACACTGAAATCGGATGGTTATCG-CTATCAGAA-AGAAT-AAAATATCAAAAATATATTA--TTGCATATAAACTTAAAACTGGAATTCTACCCGATTATTTATTTTCTCTTTTTCCAGAAACAGTAGGAGTAAATACACCTTA-CAACTTACGAAATTCTTCC-GATTA-TGTTGTTTTCAACACA----AGAACACAACTAATTGC-AAATTCGTTTATTCCGTCATGCGTATCTATT---TGGAATACA-CTTCCCGA-GTACATTTGTAACT-CAGA-GACTTTA---TCAATTTTTAAAACT-CA---TATAACA-AACATTTATTTTAAAACGCAAATGGTACCAT-CGTA-TAATCTAACTGGTAGTCGA-ATTTCATCAGTTTCCCACG-ATCGTTTGAGAAACGGATGTAGTCATCTCAAttaatctggagtttatttacactatttcc
gi|2 : ctAAAAGACGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAACGACTT----CGCCTTTTT-CGTTCCACACG-CCGTTTTCATCCCTTAAGTAgtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaaaaagacgccgagcgctactttatgcaatgttctatatatactgatgaacgacttcgcctttttcgttccacacgccgttttcatcccttaagta
gi|20 : ctattctacatattaatatccgaagtattcgaaacaagtttaactacataaaaaataactttatggattttgatatactttgttttactgcaactcacttaactgatgaaattgcaaatatagatattaatttagatggttttccagacctagtggtattttaatctatgcttcaaatcatctcatttcaaaaagaagattagacttagaatgtccgttaactgattctgtttgtgttgaagtcgggtacaagagggaccgatttttttatgtgctgtgtataccgttccccgaacacgcctgtagcattttggaatatttttaacacatgtattgaaaaagctcttgttttgtcaaaaaatatagttttagtaggtgatattaacgaagaccatttaaatactaacaataatcgtcttagaaatactatacttattaacaatttgacaaatgtcattacagaactaaccagagcaactgaaactacatcaactctgatagatccaatacttatatcagatacatttaaatgtctcaattctggaactttagatgttccgaatagaataagcgaccataaagctacttatatttatatcccattttctctgtttacacctcctgctttaactaaaaaagtttggttttatataagaggtgataatgacaaaatgaatgacatgataacttactttgattgggagtttatttcctatatttccataaacgcagaaacaatcttagattttatgcaaaaatgtattccctccaatgatataaccatcagacctactgacaagccatggtacaactctctgaaagcagacggactactagactacgagacagataaaggacaaaatcaatacaaacgcaaagaacagacgactggactaaatacaaacagttaagaaacaaagtaaataatttgaaaacgcatgctagagaacagtactttaataatatagaaactttagtttcaggcatcaaaactacaattccaaacctttactggaaacttcttaaacagattatttaggaaaacaaaaatactgaaaccataccccccttaaaaagaacctcagacactggggaggaaacctacttttataacgacgaagaaaaggcaaattgtttgaacgactatttcatttctatttcaacaatcagtaatgaaacgaatattacatttcaaaatgaaaactcgaaaactaataattttctttctaatattattataactaagtctaaaagagaagatacgattaatatccttgacactaacacatctgttaggaatgataaaataagtcacaaagtttgaagtatacagaatatagtaattctaaacctcttgtactgttatttaatagatcatttatcaaatgtgaatttccagatttatggaaatcagccctagtaatgccacttttcaaaaaaggtaaaacaaacctggcgtctaattatcgaccaatttcactcttaagctgtattggcaagttaatggaaagaattgtgtacaaacatatatatatatacttttcttgttgataataacctcatttataagttacaatctggatctctgaaaggacattccacagtttaccaacttttagatatattatcaaatttgtcaaggcatagtgaataaacaatacacttgtatggtattttgtgatgtagcgaaagcatttgatcgcgtgtggttgaaaggtcttttgttcaaattaaagcaaaatggtataaatggtagtcttcttaattggatcgacagttatttaaacaaacgtgaacaaagagtatttatatgtaatagtatttccgaaataaaaaaacaaaaaaaactgccggagttccccaatgttctgtattagctcctttattcttttaaatttacattaatgatttagccgaaaatttgttaagtattacatgaatagttgcagatgatacatctcttgcttttacatcttcaaatttaatagatttagaaggtataatcaataatgatctgatcgttatatcaaagtgggcaaaacaatggttagtgaattttaatccccaaaagactgaagctatactttttactctaaatagaaatgtttcaaatccaaatttattgtttgaaaatgttttagttaatttgtagaacaccgtaatcatttaggtatttcttttaatcatgatggaaaatgcatcaacacataaataatattgtttcatcagcttcaaatattttaggcatgatgcgaaaaatcaaatttactcttaatcgcaaatctcttaaccaaatatatatatatatatcatttttgctaccagtttttgaatatgcatcaattgtttttgataattgttcccaatatgaaaaagacaaactagaaaaaatacaacacaaagcagctagagtggttactggtttgacgcgttctgtttctataaatatgttatacactgaaatcggatggttatcgctatcagaaagaataaaatatcaaaaatatattattgcatataaacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaagaacacaactaattgcaaattcgtttattccgtcatgcgtatctatttggaatacacttcccgagtacatttgtaactcagagactttatcaatttttaaaactcatataacaaacatttattttaaaacgcaaatggtaccatcgtataatctaactggtagtcgaatttcatcagtttcccacgatcgtttgagaaacggatgtagtcatctcaagtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaAAAGGC-TGATATGTCATTTTCCTGACAACTCGAACA-CTACATCCGTTAGATATTAATTTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACAT
gi|22 : aatCGAGCA-TTACATCCGTTAAATATTA-TCTACTACTGA-------------------------AGATAATATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
gi|23 : AAGCAGCTAGAGTAAATACCGGTTTGACGTGTTTAGTTGCTGT--AGATAAGTTAT------AAATCAGATGGTAATCG-CTATCAGAA-AGAAGAA
gi|24 : TTACAGGATTAACTCGTTCTGTGTCTATTCAA--AAATTGTATACAGAAATCGGGTGGCTGTC-TTTGTCAGAG-AGAAG-AAAATAT
gi|25 : TTGCTAT---T---TC------AGAAAAT--GAT--ATATC--TGAAATTATAA-CCAAA---CT--TGATACATATAAGCCA---CGTGATCATTACTCTATAAGTCA
gi|27 : tGTAATAATCTAAATGCGGATTTATGTAGAACTCATCTGCATCCTACTCCGTTCTGTGAGTGTCAAGCGGTTATAGAA
gi|29 : cTGTTTCTAT--AAATAACTTATACACTGAAATCAGATGGTTATC-TCTATCAGAA-AGAAGAAAta
gi|3 : -AATTA-TATTACCC----CATATTGTAGAACAAAGATAA-TGCGGAAGTCGTGCATTCC-TCTCTCATTACTTTT---GGGAAT-CAGCTA---AAATGTCAATATTAAAAACAGC-GCCTTCACTTTCAATCATTAAAATTACAT--CACGACATCATGCTTAATTTAAAA---------TACCAC-CATATTATTATCA-TGACAAACGATGTTTC-TCAGTT-GTCATGCAAAACTT-AGACACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGT---------G--AAGA---TATAGAAGAct
gi|30 : GCTT---GA-TGACAATATTAAAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TACagtgaacata
gi|31 : tcACGAGTA-TGACACCAGTTAGATATGAACATACTAGGGAGTGGAAGTGAAATTCTA
gi|5 : actAAAAACATAATATTATTAAGGTG---T-T------GACCTTT-TAAAC-CCTAATT----GTCAA-CACCTTAATAATGT-AATG-TTG---TTAAAT-AATCT-ATGCTGTGTTATGACAGAACCTACCCGAA--ATAC-AAGGGCCA--CA-CA-----GATAGATCCAATTATTGTATCCGATTC--TATTAAATCATTAAA---TGAAGGAAC-TATAAATGTACCTTCGAAT----TAAGCGACCTTAAATCTAC--TTTTATTGTTTTTC-C---TTTTTCTGTTATTCT-AACT----CTTGC
gi|6 : -AATTA-TACTACTC----CATATTGTAAAATAGAGATAA-TGAGAAAGTTTTGCATTCCCTCTACCATTTCTCTT---TGAAAT-CAGCTT---GA-TGACAATATTAATG-CAGC-GCCTTCAC-TTCAATCTTTAAAGATACAT--TACGCCATATTACTAAATCTAAAA---------TACCAC-CATGTTAATCTCA-TGGCAAA-----------CAATTTGTCATGCAAGATTT-AGAAACAACTTTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATTCAT
gi|7 : GGAAT-CAGCTT---GG-TGACAATATTAAAG-CTGC-GTCTTCATATTCAGTCTTTAAAAATACAT--TACGCCATAATAATAAATACAAAA---------TACCGC-CGTATCAATCTCA-TGACAAACGATGTGTC-TCGGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCTCCCATCACCGTTCTGTCAGTGTC---AGGTTATAGAAGATACCGA
gi|8 : T-T--TATAACATGGTCAGTTCTGGATG--G---GTGTGTACCT-GATGATTGGCATCTTGCCAAT---GTA-GCACCAGTAT-TCAAAAAAGGT--GAGAAG--TATGATGCTGCCAATAACAGACCAGTCTCCCTCACTT--GCATT--TGCTGCAAG
gi|9 : aagctgctgaccctgacactatcagtacacactccaagaatgtaggaaaaagatcagcccatcatttccactaTC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAGAAATGTTTGGTTTTATATAAGAGGTG--ATTATGACAAA--C-------TG-AATGACA--TGATA-AAT----AACTT----TGATTTTGAATT-TATT-TCCTA----TAT-T--TCCA-TA--A------ACGCA-GCGGGTAAACGTTTTT-CAG-AAA-CAATTTT---AGA-TTTTA-TGAAAAA-AT-GTATTCCCTCCAA-AGA-T-A-TAACCATCAGACCTACTGtccctggagcacactat
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TATCAGATATATATAAACCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGTAATAATGATAAATTGAATGATATGATACATAACTTTGATTGCGAGTTTATTTCCACCAATGTCATAAACGCAGCTTGTGAATATTTTTCAAAAACAATTTTAAATTTTATGCAA
Unaligned ( gi|19 ): AATTTAGCATTATTTTATGTTTAAAGTTACTACTAATCTTGTCCCTTGCTATATTAATGACTTAATTCCAACATATGTTGGTGAGACAACACAATACTCACTTAGAAAAAGAAACA
Unaligned ( gi|21 ): TCAAACAAATATAAAGAGATATATAATTCAAATTAGGTAATTGTCAGTTTTATAAATTCACATTATTAAGCTTTACATGTTATGTTCGGAAATAA
Unaligned ( gi|26 ): TAATCGTAAGGTATGGTTTTATAAACGAGGAGACTTTGATAAATTGAATAAAAGAATCTCTAATACTAATTGGGATTTTATT
Unaligned ( gi|28 ): GAGCTGATTATGACAAACTGAATGACATGATACATAACTTTGATTTGGAAGTTTATTTGCTACATTTCCATAAACG
Unaligned ( gi|32 ): TAAAGCTGCTGTTCCTGATAATATCAGTGCACACTTACTCGAAGAATGCAAGAA
Alignments
lowQualScore : 22222 11 11 1 1 1 222222 1 1 222222 1 333333333 44444444444 11 222 1 11 1 1 333333 22222 1 11 11 1 1 222 1 111 1 222222222 1 333333333333333333333 111111 222 1 222222 88888888888888888888888888888 8888888888888888888888888888888888 222 333 11 111 111 1111 1 1 11111 44444444444 222222 2222222222222 44444444444444444444444444444444444444444 11 111111 55555555555555555 222222222 222222 333333 11 1 222 11 1 222 11 1 3333333 1 222 2222 222 222 1 222 2222 33333 11 2222 11 1 11 1 555555555555555 11 11 444444444 5555555555555 111 22222 1 111 33333 1111 11 222 111 11111111111 2222222 111 11111 11 11 11 11 111111 11 222 1 1 1 11 11 222 1 2222 1 22222 2222 1 1 11 11 222 22222 2222 222 4444444444 333 1 222 3333 1111 777777777777777777777777 1 2222 2222 1 1 11 11 1 1 22222 4444 1 22 2222 11111111111 33333 55555555 11 11111111 11 222222222 11 11 22 22 1 11 11 1 1 1111 111 111 222222222 1 333333 1 2
lowQualScore : 22 1 1 77777 88 1 1 88 5 1 1 1 1 5 5 1 22 999999 5 5 999999 1 5 1 888888888 11111111111 88 2 1 111 1 1 5 88 1 5 33 5 1 1 000000 66666 1 333 1 1 1 5 66 77 5 2 5 22 1 000 1 5 1 1 1 1 999 1 7 1 1 3 555555555 6 3 333333333333333333333 7 888888 333 7 3 111111 1 1 33333333333333333333333333333 7 1 1111111111111111111111111111111111 333 777 88 999 8 3 0 111 8 1 7777 0 44 1 11 1 0 88888 66 88888888888 6 000000 1 77 9999999999999 99999999999999999999999999999999999999999 8 66 22 22 6 444444 00000000000000000 8 8 1 333333333 1 1 1 1 1 999999 1 1 000000 88 1 1 5 000 88 5 000 88 2 22 5 1 1 2 1 1 1 1 1 2222222 5 000 4444 000 1 000 5 1 1 22 111 22 1 1 1 1111 33333 1 1 88 1 0 6 22 2222 1 1 1 1 1 33 0 88 3 7 7 1 1 1 111111111111111 7 88 88 7 111111111 6 111 2222222222222 2 222 11111 3 1 555 33333 6 4444 00 1 999 99 3 777 0 55555555555 22 7777777 000 1 88888 11 8 11 11 1 1 1 1 1 99 33 888888 1 88 555 5 1 22 1 5 5 22 1 22 1 1 88 88 111 5 4444 1 5 66666 4444 1 1 1 1 1 1 333 1 5 1 5 1 22 22 1 88 88 111 2 1 77777 22 3333 1 000 2 1 1 1111111111 1 1 1 1 888 1 1 2 0 0 0 333 7777 8888 6 444444444444444444444444 77 22 2 7 8888 7777 1 1 3 6 0 7 2 1 1 88 2 22 88 1 5 5 88888 7 22 1 0 2222 3 7 6 55 6 8888 1 11111111111 3 1 7 33333 33333333 0 88 44444444 0 1 1 1 1 22 88 1 444444444 1 88 88 1 1 1 1 1 0 1 1 1 55 66 1 22 1 1 66 0 8 0 7 88 77 22 22 333 22 1 1 1 2 1 22 22 4444 1 1 1 22 4444 6 3 3 3 8 8 7777 3 8 3 1 8 6666 1 444 6 000 5 5 5 0 66 1 77 6 3 1 1 666666666 6 0 3 1 2 6 0 5 3 8 22 8 3 2 3 3 2 0 1 22 1 1 1 1 222222 2 44 0 8 3 0 2 0 2 6 7 1 1 1 1 1 1
lowQualScore : .. . . ..... .. . . .. . . . . . . . . .. ...... . . ...... . . . ......... ........... .. . . ... . . . .. . . .. . . . ...... ..... . ... . . . . .. .. . . . .. . ... . . . . . . ... . . . . . ......... . . ..................... . ...... ... . . ...... . . ............................. . . .................................. ... ... .. ... . . . ... . . .... . .. . .. . . ..... .. ........... . ...... . .. ............. ......................................... . .. .. .. . ...... ................. . . . ......... . . . . . ...... . . ...... .. . . . ... .. . ... .. . .. . . . . . . . . . ....... . ... .... ... . ... . . . .. ... .. . . . .... ..... . . .. . . . .. .... . . . . . .. . .. . . . . . . ............... . .. .. . ......... . ... ............. . ... ..... . . ... ..... . .... .. . ... .. . ... . ........... .. ....... ... . ..... .. . .. .. . . . . . .. .. ...... . .. ... . . .. . . . .. . .. . . .. .. ... . .... . . ..... .... . . . . . . ... . . . . . .. .. . .. .. ... . . ..... .. .... . ... . . . .......... . . . . ... . . . . . . ... .... .... . ........................ .. .. . . .... .... . . . . . . . . . .. . .. .. . . . ..... . .. . . .... . . . .. . .... . ........... . . . ..... ........ . .. ........ . . . . . .. .. . ......... . .. .. . . . . . . . . . .. .. . .. . . .. . . . . .. .. .. .. ... .. . . . . . .. .. .... . . . .. .... . . . . . . .... . . . . . .... . ... . ... . . . . .. . .. . . . . ......... . . . . . . . . . . .. . . . . . . . . .. . . . . ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 00 0 0 55555 55 0 0 55 5 0 0 0 0 0 0 0 00 555555 0 0 555555 0 5 0 000000000 55555555555 55 5 0 000 0 0 0 55 0 5 55 5 0 0 000000 00000 0 000 0 0 0 0 00 55 5 5 5 00 0 555 0 5 0 0 0 0 555 0 3 0 0 3 000000000 7 3 333333333333333333333 3 000000 333 3 3 000000 0 0 33333333333333333333333333333 3 0 0000000000000000000000000000000000 333 777 33 777 0 2 8 888 0 0 0000 0 22 4 44 4 6 55555 88 88888888888 7 333333 0 77 5555555555555 00000000000000000000000000000000000000000 0 66 66 00 0 666666 00000000000000000 0 0 0 000000000 0 0 0 0 0 555555 0 0 555555 00 0 0 0 555 00 5 555 55 5 00 5 0 0 5 0 0 0 0 0 5555555 5 555 0000 555 0 555 5 0 0 00 000 00 0 0 0 7777 33333 0 0 33 0 7 7 00 7777 0 0 0 0 0 00 7 33 3 3 3 0 0 0 222222222222222 3 33 33 3 000000000 7 777 7777777777777 5 000 77777 3 0 333 33333 7 8888 22 0 222 00 2 555 2 00000000000 44 0000000 888 0 44444 00 2 88 00 0 0 4 0 0 00 22 222222 0 33 777 5 0 00 0 0 0 00 0 00 0 0 00 00 000 5 0000 0 5 55555 0000 0 0 0 0 0 0 000 0 0 0 0 0 00 00 0 55 00 000 5 0 00000 00 5555 0 555 5 0 0 5555555555 0 0 0 0 777 0 0 0 7 7 7 333 7777 0000 7 000000000000000000000000 33 00 0 3 3333 0000 0 0 3 7 7 3 0 0 0 55 5 00 55 0 0 5 33333 3 00 0 7 7777 3 3 7 33 7 3333 0 00000000000 7 0 3 33333 00000000 7 33 00000000 7 0 0 0 0 00 55 0 000000000 0 55 00 0 0 0 0 0 2 0 4 0 44 44 4 22 0 4 88 8 0 6 3 55 55 00 00 000 00 0 0 0 5 0 00 00 0000 0 0 0 00 0000 7 7 3 3 0 0 0000 8 0 2 4 8 6666 4 000 7 000 7 7 7 7 99 6 99 7 5 7 0 777777777 7 7 2 0 5 7 0 6 8 0 22 0 2 5 2 2 5 7 0 00 0 0 0 0 777777 0 77 8 0 2 2 5 2 5 7 3 0 0 0 0 0 0
consensus : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--T--TAAATNTNTCAA---TG---GAAC-T-TAGATGT---TCCGAATAG-ATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG--A--ATTTCGAT--C--T----TA-AATGA-A--TGANA-NAT----AAC------TGATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--A------ATGAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---A---CTGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TA-ACANAACC-ATA-----TCTAAACCTTTAGCCATACT-T--TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGT--GACAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTT-AGCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAAC--ATATGTACA--TACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCG---ATT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
Reference ( family-1625 ) : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--T--TAAATNTNTCAA---TG---GAAC-T-TAGATGT---TCCGAATAG-ATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG--A--ATTTCGAT--C--T----TA-AATGA-A--TGANA-NAT----AAC------TGATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--A------ATGAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---A---CTGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TA-ACANAACC-ATA-----TCTAAACCTTTAGCCATACT-T--TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGT--GACAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTT-AGCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAAC--ATATGTACA--TACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCG---ATT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
gi|1 : ATTTTACACTGTAATATTAGAAGTATTAGAAATAAGATAATTTT--TTTTGTTAAAAAC--CTTT-TAGACCATGATATTCTTTGTTTTACTGAAACGCACCTTGA-TAATCAGATACCAAATGACTCTTTA-ATACTTAATGAAAACTTTGATATATTTTACAGAAATGAACGTTCTAATCATGGAGGGGGGATACTT--ATTTATGTTTCAAATAGTGTTATTCATTCCAGGCGAA-AT--GCCTTGGAAATATTTTGTAAC-GAATCAATTTGGATAAATGTCAAAATCA-----AAAATGAAAATATACTATTAGGTG-TGTTCTATA--GT-CCCAAAAC-CGCAGATACCACGTTTTTCGA-TAACCTGAATGTAAATATTGAGAAGGCCTATGAAACTTCTCAAAA--TATCGTCCTCCTA-GGTGAT-TATAATGAAAAC-ATTCTAAAC-T-CATCATTCCAT-AA-C--CT--GAAAGAC-A-TA-TTAACCTTAAACTCACTT-ATCA-ATATTATAAATGAACCCACCAGA---------AAT-CTAGCCAT----TCT--T-GATCCAATCATTGTACCATATG---------ATATGCCA----------------TAGAAGT---TCCAGCTAACATAAGTGAACATAAAGCAACATTTATA----ATATTACCATTCCC---GT----ACGAGCTAAATTCTACATATAAA-AGACAAATATGGTTGTACA-ACAAAGCA--A--ATTTTAAT--C--TCCTTTATGATAA-AGTTGAAT-CAT----A--------TGATTGGGA--C-TGCT-TAATA----AAC-TGCTCTA-TT--A------ATGAA-GCATGC-GACAAGTTTACAT-ATA-TATTTATTGAA-A-T--GG-T-TAAAA-CTTGCATACCATCTAA-A-T-T-AATAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTC------AGAAGTTGGAAAATATCTA--AAAATAAGAGATAGACTAAAG---AAAATTGCAAT-TAAATCAGGTAAGG--CAAATGATGGGTGTAGATATAA-CAATCTAGAAACAAAGTAAATAACATAAAAAAACAAGCTAAAGAAAACTTTTTTAATAATCTGAAAATTTCATTAAACGATTTACAG---TCGAA----CGAT---AAAACAGGTTT-CTGGAAAATCATTAGACATTTTGTT---AAAAATTCAGACTCTGCATCCACATTT-CAACCTCTTTGTAAAACAAATATAAATGGCACT-------AAATATTCTCTTATTTCTTG-CAAAGAAAAGGCTGAGCACCTTAATGACTATTTTACATCTATATCGAC--CCAA-GACGAGATAAATGTCCAACGAC--CAGTATCTACAC-CAAAAACAGATGAGAGTCTTACAAATTTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAAAC---A---CTGTTAATATAAATAA---AGCATGTGGCCATGACTCTATAAGCCATAAGATGTTTAAAGG-GGTA-ACATAACC-ATA-----TCTAAACATTTAGCCATACT-T--TTTAAC-CGCTC---TCTGGATGAAG---GGATTTATCCTGACGTTTGGAAGATAGCAAAT---GTT-ACACCAATATAT--AAAAAGGT--GACAAGCCTATA--GCTTCAAACTATAGACCAGTTTCTTTA-CTT-AGCTGT--TGTGGTAAGATATTTGAAAGAATCATTTTTAAAC--ACATGTACA---ACTTT-CTTCTTACAAATAAATT-ATTGTATAAATATCAATCAGGATTTCTACCAAACCATTCAACAACATTT--CAG---TTAGTATACATCTTTCATTATATCTG-CAAAACCTTTGATAGC----AAACAATTTTCATGTATAGTATTCTGTGACATATCGAAGGCTTTTGATCGTGTCTGGCATCAGGGGCTCTTATTCAAACTTAATG-AAATTGGCATTTATGGTACACTACTTAGTTGGTTATCAA--GTTATCTGAAACACAGATCTCAAC-----GTGTTGTTATACAATCATCAGAATCCACTCTTAAGTATATAAA----------TGCAGGTGTTCCCCAAGGATCTGT-CCTTGGACCTCTATTATTTCTAATATATGTTAACGATATCGCTG---ATTCA-CTATTAAGT-TTA-ACTAG--GTTGTATGAGG---------ACGATA-GTTCCTTA-TATTAT-TC----TGCAACTTCTACCCAGGATCTTGAAGGTATTATAAACTATGATCTTGAT-ATTATATCTAAATGGTCTAAACAATGGATGGTGAACTTTAATCCG-AACAAACTGAAGCTATGTTCTTCTCTTTAAG--AAAACCTGACAGACTACCTAATGTTAT-ATTTGAAAATACTTATTA--CAATTTGTTCATTCTCATAAACATCTTGGTGTTA-CTTTAAGCCATGATGGTAATTG--GTCAACACATATTGAAAGCATATTACTT--TCTGCTTCCAAGACAATACACATTATGAGACACTTAAAATTCACTATTGGAAGAAACGCA--------CTCAATCAA--ATGTATA---A-ATCGTATGTGCGTCCAATTCTAGAGTATTCTTCATTGGTCTGGGATGGTTG--CACAGT--GCACTTCACAGATTCAA--TAGAAAAACTACAAAACGAAGCAGCACGAATTGTCACAGGACTTACCCGATCAGTATCTATTCAAA--AACTGTATAATGAATGTGGATGGGAACCACTTA--AAAAGAGAAGAGAAAT-TTAAAAATAT--TACCTTATGTATAATGTATACCATTCAAATATTCCAAGTTATATAAATGATCTTTTCCCACCTCTATTTGGTGCAACAACTGAATACCCACTAA-GAAA-CAGGAATAACTA-TACTACTC----CATACTGTAGAACAGAGATAA-TGCGAAAGTCATGCATTCCCTCTTCTATTTCTCTT---TGGAAT-CAGCTT---GA-TGAAAAAATTAGAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TATGCCAAAATACTAAATTTAAAA---------TACCAC-CATAGTATTCTCA-TGGCAAA-GATGTGTC-TCAGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATTTAAATGCCGATCTTTGTAGAAATCATCTGCACCCATTACCTTTCTGTGAGTGTCAAGAGGTCATAGAAGATGCTGAACACTACTTCTTTAAATGTCCTAAATAAAGCAATCAAAGAC-T----CGTCTTGTTTCAAACAACACGAGCA-TTACATCCATTAAATATTAATCTACTACTGAGTGGAAGTGAAACTATATCTATAGCAGATAAC-TTACTATTGTAGATGCTGTCCATAACTTTATTAAAGATACCCATAGTTT
gi|10 : cgACACCCAC--CCT-----TAAAAAGAACTTTA--GCCGCTGGGGAGGAAACCTANNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NC-ATTTCCAAATGAAAACTCGAAAACTTATTATTCTCTTTCTAATATTATTAT---t
gi|11 : TCTGT---TATATTCTTTATTGATT-AAATAAACATTAATGATATAGATG---ATT-AATTGTTA----TTACACG--T--TTGTG----GGAACAAGATACGAGACATAAGTTGTTTGTACATCAATCTTCAAATTTTAC---CGAATTAGGAGATGTGTTGAACAATAATTT-GATCGTTATATCAAAGTGAGCAAAACAACAGTTATTG-ATATCAATCCCTAaacaaagtctgaaatagaaga
gi|12 : GAAAAGTATTGTTGTACA-AAAGGGCA--A--ATTTTGAT--CTTT----TA-AATA------GAAA-AAT----AAT------TGATACTGA--C-TGGTCTGATATTTTAACATGATGTA-GT--AATATAGATGAA-GCTTGT-GACGTTTTTACTTCAAACTATTTA----G-A-TATGGCT-GAAGA-AT-GTATTCCAAATAA-A-CTT-G-TAATTATTCATCAAAATGA
gi|13 : acatataagcTACCGACTTA-GAAA-TAGTAA-AAATATTGTTATTC----CCAATTGTAGAACAGATGTTA-TGAAAAATGCATGTATTCCATCAGG--TTTCTTTTATACGGAAT-CAACTA---GA-AGACAGTGTAAGAT-CATCTGCATCC-TTTTCAATTGTCAA----ACATGATATG-CGTAGT-CTAAATGGAAA-------------CACACATATTACT-TTA-TGt
gi|14 : AAAATGTTT---GGTTAAT--GTGAAACTTCATAAACATTTAGTTGT-------AA-CTA--ATG-AAAATGGTGTCAA----TA----AACA--------TCGTCGGCTTCAAATAGTATAGATA-GATACTTAAAATCAAATTTATTCCA-----AATTGGAAAATA---ATTATTCGA--AAAT---TATGTTTCATTCCTAAGATCAGTGTTAGAATATACATC
gi|15 : CATGACTCTATAAGCCATACTACGCTTAAAGGTG-TA-ACAAAACCCATC-----TCTAAACCTTTAGCCATATT-T--TTTAAC-CGCCC---TCTTAATGAAG---GGATTTA----------TGCAAAATAGCAAAT---GTT-TCACATCTATAT-AAAAAAGGT--GACAAAGCTATA--GTTTCAAACTAAAAAT--ATTTTTTT--CT
gi|16 : AAAGCA--A--ATTTCGAC--T--TGC--TA-AAT-A-A--TAAAA-TATCAGAAAC------TGATTGGAG--CATGCT--GCTA----AAC--GGTACAGTT--G------TTGAG-GCTTGT-GAAATGTTCTCAA-AAA-TATTTAT---A-AGTTTAG-T-CAAAATGT-GTATTCCGTCTAA-A-A-CAA-TAACTGTCC
gi|17 : CCC-AAAGTTTGGAAGGAAGCGTTC---GTATGTGCTATT-TA-CAAGAAAGGA--GACCCGTCTTTG--GCTAATAATTACAGACCTATTTCACT--TCT-AAGTGTATTG-AACAAAGTATTTGAAAGGCTCGTTTTTAAGC--ATATGTTCAATTATTTT
gi|18 : tatATC-CTATTTTCTTT----TTGC-AACT----ACTGCTT-TAAGTAGAAAAGTTTGGTTT---ATAAAAAACGT-G--ATTACGATAAT--T----TG-AATGACA--TGATA-CAT----AAC------T
gi|2 : atcATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCA-CTTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCAT---TTCAAAAAGAAGATTAGACTTAG-AATGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTA-GGTGATAT-TAACGAAGACCATT-TAAATAC-TAACA----AT-AATCGTCTTAGAAATACTA-TACTTA---TT-AAC-AATTTGACAA-ATGTCATTACAGAACTAACCAGAGCAA--CTGAAA-CTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATT--TAAATGTCTCAATTCTG---GAACTT-TAGATGT---TCCGAATAGAATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAAAAAAGTTTGGTTTTATATAAGAGGTGATA--AT---GAC--A--------A-AATGA-A--TGACATGAT----AACTTACTTTGATTGGGA-----GTT-TATT---------TCCTATA-TTTCC------ATAAACGCA-GA-AACAATCTTAGAT-------TTTAT---G-----------CAAAA-AT-GTATTCCCTCCAATG-A-T-A-TAACCATCAGACCTACTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCC-C--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCTAATATTATTATAACTAAGTCTAAAAGAGAAGATACGATTAATATCCTTGACA--CTAA-C---ACATCTGTTAGGAATGATAA---A------------------ATAAGTCACAAA--GTTTGAA---G-TATACAGAA-T-ATAGTAATTCTAAACCTCTTG---TACTGTTATTTAAT-AGATCA--TTT--ATCAAATGTGAATTT-CCA-GATTTATGGAAATCAGC---CCTAGTA-ATGCCACT-TTTCAAAAAAGGTAAAACAAACC--TG--GCGTCTAATTATCGACCAATTTCACT--CTTAAGCTGT--ATTGGCAAGTTAATGGAAAGAATTGTGTACAAACATATATATATA--TACTTTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATA----TTATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAA---ACAAACGTGAACAAAGAGTATTTATATGTAAT----AGTAT---TTCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTAT-TAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT----TGTTAAGTATTACATGAATAGTTGCA----G---------ATGATACATCTCTTGCTTTTACATC----TTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTTT--TAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAA-TCATGATGGAAAATG-CATCAACACATA----AATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---ATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACTGGTTTGACGCGTTCTGTTTCTAT--AAATATGTTATACACTGAAATCGGATGGTTATCG-CTATCAGAA-AGAAT-AAAATATCAAAAATATATTA--TTGCATATAAACTTAAAACTGGAATTCTACCCGATTATTTATTTTCTCTTTTTCCAGAAACAGTAGGAGTAAATACACCTTA-CAACTTACGAAATTCTTCC-GATTA-TGTTGTTTTCAACACA----AGAACACAACTAATTGC-AAATTCGTTTATTCCGTCATGCGTATCTATT---TGGAATACA-CTTCCCGA-GTACATTTGTAACT-CAGA-GACTTTA---TCAATTTTTAAAACT-CA---TATAACA-AACATTTATTTTAAAACGCAAATGGTACCAT-CGTA-TAATCTAACTGGTAGTCGA-ATTTCATCAGTTTCCCACG-ATCGTTTGAGAAACGGATGTAGTCATCTCAAttaatctggagtttatttacactatttcc
gi|2 : ctAAAAGACGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAACGACTT----CGCCTTTTT-CGTTCCACACG-CCGTTTTCATCCCTTAAGTAgtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaaaaagacgccgagcgctactttatgcaatgttctatatatactgatgaacgacttcgcctttttcgttccacacgccgttttcatcccttaagta
gi|20 : ctattctacatattaatatccgaagtattcgaaacaagtttaactacataaaaaataactttatggattttgatatactttgttttactgcaactcacttaactgatgaaattgcaaatatagatattaatttagatggttttccagacctagtggtattttaatctatgcttcaaatcatctcatttcaaaaagaagattagacttagaatgtccgttaactgattctgtttgtgttgaagtcgggtacaagagggaccgatttttttatgtgctgtgtataccgttccccgaacacgcctgtagcattttggaatatttttaacacatgtattgaaaaagctcttgttttgtcaaaaaatatagttttagtaggtgatattaacgaagaccatttaaatactaacaataatcgtcttagaaatactatacttattaacaatttgacaaatgtcattacagaactaaccagagcaactgaaactacatcaactctgatagatccaatacttatatcagatacatttaaatgtctcaattctggaactttagatgttccgaatagaataagcgaccataaagctacttatatttatatcccattttctctgtttacacctcctgctttaactaaaaaagtttggttttatataagaggtgataatgacaaaatgaatgacatgataacttactttgattgggagtttatttcctatatttccataaacgcagaaacaatcttagattttatgcaaaaatgtattccctccaatgatataaccatcagacctactgacaagccatggtacaactctctgaaagcagacggactactagactacgagacagataaaggacaaaatcaatacaaacgcaaagaacagacgactggactaaatacaaacagttaagaaacaaagtaaataatttgaaaacgcatgctagagaacagtactttaataatatagaaactttagtttcaggcatcaaaactacaattccaaacctttactggaaacttcttaaacagattatttaggaaaacaaaaatactgaaaccataccccccttaaaaagaacctcagacactggggaggaaacctacttttataacgacgaagaaaaggcaaattgtttgaacgactatttcatttctatttcaacaatcagtaatgaaacgaatattacatttcaaaatgaaaactcgaaaactaataattttctttctaatattattataactaagtctaaaagagaagatacgattaatatccttgacactaacacatctgttaggaatgataaaataagtcacaaagtttgaagtatacagaatatagtaattctaaacctcttgtactgttatttaatagatcatttatcaaatgtgaatttccagatttatggaaatcagccctagtaatgccacttttcaaaaaaggtaaaacaaacctggcgtctaattatcgaccaatttcactcttaagctgtattggcaagttaatggaaagaattgtgtacaaacatatatatatatacttttcttgttgataataacctcatttataagttacaatctggatctctgaaaggacattccacagtttaccaacttttagatatattatcaaatttgtcaaggcatagtgaataaacaatacacttgtatggtattttgtgatgtagcgaaagcatttgatcgcgtgtggttgaaaggtcttttgttcaaattaaagcaaaatggtataaatggtagtcttcttaattggatcgacagttatttaaacaaacgtgaacaaagagtatttatatgtaatagtatttccgaaataaaaaaacaaaaaaaactgccggagttccccaatgttctgtattagctcctttattcttttaaatttacattaatgatttagccgaaaatttgttaagtattacatgaatagttgcagatgatacatctcttgcttttacatcttcaaatttaatagatttagaaggtataatcaataatgatctgatcgttatatcaaagtgggcaaaacaatggttagtgaattttaatccccaaaagactgaagctatactttttactctaaatagaaatgtttcaaatccaaatttattgtttgaaaatgttttagttaatttgtagaacaccgtaatcatttaggtatttcttttaatcatgatggaaaatgcatcaacacataaataatattgtttcatcagcttcaaatattttaggcatgatgcgaaaaatcaaatttactcttaatcgcaaatctcttaaccaaatatatatatatatatcatttttgctaccagtttttgaatatgcatcaattgtttttgataattgttcccaatatgaaaaagacaaactagaaaaaatacaacacaaagcagctagagtggttactggtttgacgcgttctgtttctataaatatgttatacactgaaatcggatggttatcgctatcagaaagaataaaatatcaaaaatatattattgcatataaacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaagaacacaactaattgcaaattcgtttattccgtcatgcgtatctatttggaatacacttcccgagtacatttgtaactcagagactttatcaatttttaaaactcatataacaaacatttattttaaaacgcaaatggtaccatcgtataatctaactggtagtcgaatttcatcagtttcccacgatcgtttgagaaacggatgtagtcatctcaagtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaAAAGGC-TGATATGTCATTTTCCTGACAACTCGAACA-CTACATCCGTTAGATATTAATTTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACAT
gi|22 : aatCGAGCA-TTACATCCGTTAAATATTA-TCTACTACTGA-------------------------AGATAATATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
gi|23 : AAGCAGCTAGAGTAAATACCGGTTTGACGTGTTTAGTTGCTGT--AGATAAGTTAT------AAATCAGATGGTAATCG-CTATCAGAA-AGAAGAA
gi|24 : TTACAGGATTAACTCGTTCTGTGTCTATTCAA--AAATTGTATACAGAAATCGGGTGGCTGTC-TTTGTCAGAG-AGAAG-AAAATAT
gi|25 : TTGCTAT---T---TC------AGAAAAT--GAT--ATATC--TGAAATTATAA-CCAAA---CT--TGATACATATAAGCCA---CGTGATCATTACTCTATAAGTCA
gi|27 : tGTAATAATCTAAATGCGGATTTATGTAGAACTCATCTGCATCCTACTCCGTTCTGTGAGTGTCAAGCGGTTATAGAA
gi|29 : cTGTTTCTAT--AAATAACTTATACACTGAAATCAGATGGTTATC-TCTATCAGAA-AGAAGAAAta
gi|3 : -AATTA-TATTACCC----CATATTGTAGAACAAAGATAA-TGCGGAAGTCGTGCATTCC-TCTCTCATTACTTTT---GGGAAT-CAGCTA---AAATGTCAATATTAAAAACAGC-GCCTTCACTTTCAATCATTAAAATTACAT--CACGACATCATGCTTAATTTAAAA---------TACCAC-CATATTATTATCA-TGACAAACGATGTTTC-TCAGTT-GTCATGCAAAACTT-AGACACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGT---------G--AAGA---TATAGAAGAct
gi|30 : GCTT---GA-TGACAATATTAAAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TACagtgaacata
gi|31 : tcACGAGTA-TGACACCAGTTAGATATGAACATACTAGGGAGTGGAAGTGAAATTCTA
gi|5 : actAAAAACATAATATTATTAAGGTG---T-T------GACCTTT-TAAAC-CCTAATT----GTCAA-CACCTTAATAATGT-AATG-TTG---TTAAAT-AATCT-ATGCTGTGTTATGACAGAACCTACCCGAA--ATAC-AAGGGCCA--CA-CA-----GATAGATCCAATTATTGTATCCGATTC--TATTAAATCATTAAA---TGAAGGAAC-TATAAATGTACCTTCGAAT----TAAGCGACCTTAAATCTAC--TTTTATTGTTTTTC-C---TTTTTCTGTTATTCT-AACT----CTTGC
gi|6 : -AATTA-TACTACTC----CATATTGTAAAATAGAGATAA-TGAGAAAGTTTTGCATTCCCTCTACCATTTCTCTT---TGAAAT-CAGCTT---GA-TGACAATATTAATG-CAGC-GCCTTCAC-TTCAATCTTTAAAGATACAT--TACGCCATATTACTAAATCTAAAA---------TACCAC-CATGTTAATCTCA-TGGCAAA-----------CAATTTGTCATGCAAGATTT-AGAAACAACTTTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATTCAT
gi|7 : GGAAT-CAGCTT---GG-TGACAATATTAAAG-CTGC-GTCTTCATATTCAGTCTTTAAAAATACAT--TACGCCATAATAATAAATACAAAA---------TACCGC-CGTATCAATCTCA-TGACAAACGATGTGTC-TCGGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCTCCCATCACCGTTCTGTCAGTGTC---AGGTTATAGAAGATACCGA
gi|8 : T-T--TATAACATGGTCAGTTCTGGATG--G---GTGTGTACCT-GATGATTGGCATCTTGCCAAT---GTA-GCACCAGTAT-TCAAAAAAGGT--GAGAAG--TATGATGCTGCCAATAACAGACCAGTCTCCCTCACTT--GCATT--TGCTGCAAG
gi|9 : aagctgctgaccctgacactatcagtacacactccaagaatgtaggaaaaagatcagcccatcatttccactaTC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAGAAATGTTTGGTTTTATATAAGAGGTG--ATTATGACAAA--C-------TG-AATGACA--TGATA-AAT----AACTT----TGATTTTGAATT-TATT-TCCTA----TAT-T--TCCA-TA--A------ACGCA-GCGGGTAAACGTTTTT-CAG-AAA-CAATTTT---AGA-TTTTA-TGAAAAA-AT-GTATTCCCTCCAA-AGA-T-A-TAACCATCAGACCTACTGtccctggagcacactat
blockSeqs : AT C C . AA A A AA A T A C T . C G TG . G . . A . C . . TA C C . A A G TA A . GT T T T . GGTAC G CCG T T T C G CC T C A CT G . G A T T T T T G A T G A ATATTAAC C . ACTAACAATAATCGT T TATAC . A . GACAA T A GCAACTGAAACTACATCAACTCTG A A ACATTTAAATGTCTCAATTCTGGAACTT ACC AGA . TTG . T TAT . A . . GT A GT C T ATA TT TCTTT . GACA A TG AACTTACTT CTGGTCTGATATTTTAACATGATGTAGTAATATAG C TT TA TT A TCAAAC TAGATTTTATGA T . A ACTTG T A A A A TCTGAA C A . CT C C . GAC . A . AA T AC A A T C T C G A A . . GCA ACTA TCC C . A C C GA TAG AA A A A AC . T T . C G NN NN N N N N N NN N . . T T T T C AACTAAGTCTAAAAG A TA CT T CACAT G ATG GCCACGTGAT G TAC GGTG T A CCC GTAAT C GTTA AT C AGT TA A TGT ACCTGATGAT AA AAAT ATG C ATAT AA G TA AT T A A T T CA AA ATTGA G AT ATT T G AT C C . TA T AA A C . AC CTT . . A T . GAAT A A T G A G TGA T . A C A AA GT T . CA . G G AAAGA TA . T . G A A CAAAAAAAAC C A T T AT A G T AAA AAT AGTA C TTTGTGGGAACAAGAT CA AA T A AATC C G G . C A T A A TA G TT . A . T TAG T GA T TTCT . T G GT C . C ATATTGTTTCA G G T . AAATA AT ATATATAT C A A T TT TT C ATGAA A . AC A C G T T G T T TC AT G AC T T G . A A AT . AC TA AAC GG T C A C T TT TC GAAA G A A AT ACCT C G C T . T TCAA T T A A A ATGC T ATA A CCC A A T TT C GA A T A G CGCAAATGG A T C C C C T T A TC G T G T A G A GC T T C G TGATA C GT T A G C A A A A C G T A
blockSeqs : A A T . TT C . CCTAATTGTCAACAC T AATG . . . ATGCT G T AATACAAGGGCCACACAG A T TCTATTAAATCATTAAATGAAGGAACTA . . . TT . C T . C . . CT T TT T T ATT TT CTTGC . GACA A A CAGAAAC CATGCTGCTAAACGGTACAGTTG . TT T TG T AAAA TAAGTTTAGTC . . G AACAA A T C C . C C . A G AA GA A T G T T AA T . . T T A A T TTC . . . . CCAAA . CAT A T A G . G T . . T C A A GG A . CCAGATTTA GG GTTC TT T TTTC . T TT . A T C A A . A ATTG T . T . C C . . . . C AATAGTTGCAG CA CT C A . A A C . C . C GG . AG A . . . . C . . T TCG A T . . AATCT . TATGT T G A C T G A T . AT G AT A A G . A A . A . . . . . T . G G G TCTC A . . . . . . CT T . A T G T . . T A A . C T T . TG . T C T A G TT . TG . A G C . A
blockSeqs : . C T . A . . CT T TT T T TG TA TAATT . GAA T T AACTT ATTTATTTCCTATATTTCCATAA . GG T AT A GAAA GATATGGCTG . . C TGATA A T C . T A G . . . . A AT CCTA AA C ATTC . C TA . T T T A A . . TGCT A A T T G . AT A AC T T T . . . . . T . G G C TACC T . . . . . . CT A . C T A T . . T T C . C . G . TA . . . . . . . . . .
blockSeqs : . . T . C . T T . . A GA CA . AA C C AAT GTTTATTTCCTATATTTCC . A A TT . T TGC . . C AGATA TC CAAT AG G TAC . . . . G C C . C . T T . . C . . T T . . . . . . . . T . AGG C . . . . . . TA A . C T A C . . T A C . . . . . G . .
blockSeqs : A . AC . A T A AAC . . . . . C A . . . . A . . . A . .
blockSeqs : . . . . . . .
blockSeqCons : T** **** TA*** TNTTT****** GAA*** AACTT******** TATTGN*********** ** ** AT N*
originalCons : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--T--TAAATNTNTCAA---TG---GAAC-T-TAGATGT---TCCGAATAG-ATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG--A--ATTTCGAT--C--T----TA-AATGA-A--TGANA-NAT----AAC------TGATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--A------ATGAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTAT---A-A-TTTGG-T-NAAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---A---CTGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TA-ACANAACC-ATA-----TCTAAACCTTTAGCCATACT-T--TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGT--GACAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTT-AGCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAAC--ATATGTACA--TACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCG---ATT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATTCAAATAAGTTATACACTGAAATCGGATGGTTATCGTCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
finalCons : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--T--TAAATNTNTCAA---TG---GAAC-T-TAGATGT---TCCGAATAG-ATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGTT--TAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCGTA---ATTTCGATNTTT------TA-AATGAA---TGANA-NATAACTT--------TGATTGGGA--C-TGCT-TGNTA----AAC-TGNTNTA-TT--A------ATGAA-GCNTGC-GACGTTTTTACAT-AAA-TATTTATATTGN-----------AAAA-AT-GTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---A---CTGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TA-ACANAACC-ATA-----TCTAAACCTTTAGCCATACT-T--TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGT--GACAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTT-AGCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAAC--ATATGTACA--TACTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCG---ATT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTAT--AAATAAGTTATACACTGAAATCGGATGGTTATCN-CTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TATCAGATATATATAAACCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGGTAATAATGATAAATTGAATGATATGATACATAACTTTGATTGCGAGTTTATTTCCACCAATGTCATAAACGCAGCTTGTGAATATTTTTCAAAAACAATTTTAAATTTTATGCAA
Unaligned ( gi|19 ): AATTTAGCATTATTTTATGTTTAAAGTTACTACTAATCTTGTCCCTTGCTATATTAATGACTTAATTCCAACATATGTTGGTGAGACAACACAATACTCACTTAGAAAAAGAAACA
Unaligned ( gi|21 ): TCAAACAAATATAAAGAGATATATAATTCAAATTAGGTAATTGTCAGTTTTATAAATTCACATTATTAAGCTTTACATGTTATGTTCGGAAATAA
Unaligned ( gi|26 ): TAATCGTAAGGTATGGTTTTATAAACGAGGAGACTTTGATAAATTGAATAAAAGAATCTCTAATACTAATTGGGATTTTATT
Unaligned ( gi|28 ): GAGCTGATTATGACAAACTGAATGACATGATACATAACTTTGATTTGGAAGTTTATTTGCTACATTTCCATAAACG
Unaligned ( gi|32 ): TAAAGCTGCTGTTCCTGATAATATCAGTGCACACTTACTCGAAGAATGCAAGAA
Alignments
lowQualScore : 22222 11 11 1 1 1 222222 1 1 222222 1 333333333 44444444444 11 222 1 11 1 1 333333 22222 1 11 11 1 1 222 1 111 1 222222222 1 333333333333333333333 111111 222 111 222222 88888888888888888888888888888 777777777777777777777777777777 222 33333 11 111 111 1111 1 1 22 111 22222 2222 1111 11111 4444444444444444444444444444444444444444444444 1111 2222222222222 5555555555555555555555 22 222222222 222222 333333 11 1 222 11 1 222 11 1 3333333 1 222 2222 222 222 1 222 2222 33333 11 2222 11 1 11 1 555555555555555 11 11 3333333333 5555555555555 111 222 3333333333 1111 11 222 111 11111111111 2222222 111 222 11 11 11 11 111111 333333 1 1 1 11 11 222 1 2222 1 22222 2222 1 1 11 11 222 22222 2222 222 4444444444 333 1 444444444 1111 777777777777777777777777 1 2222 2222 1 1 11 11 1 1 22222 4444 1 22 2222 11111111111 33333 55555555 11 11111111 11 222222222 11 11 11 11 1 1 1111 111 111 222222222 1 333333 1 2
lowQualScore : 22 1 1 77777 88 1 1 88 5 1 1 1 1 5 5 1 22 999999 5 5 999999 1 5 1 888888888 11111111111 88 2 1 111 1 1 5 88 1 5 33 5 1 1 000000 66666 1 333 1 1 1 5 66 77 5 2 5 22 1 000 1 5 1 1 1 1 999 1 7 1 1 3 555555555 6 3 333333333333333333333 7 888888 333 666 111111 1 1 33333333333333333333333333333 7 1 222222222222222222222222222222 333 66666 88 999 8 3 0 111 8 1 7777 0 44 1 11 1 0 44 000 33333 5 0 0000 1 66 0000 00000 2 7777777777777777777777777777777777777777777777 6 44 3333 0 5555555555555 5555555555555555555555 22 1 333333333 1 1 1 1 1 999999 1 1 000000 88 1 1 5 000 88 5 000 88 2 22 5 1 1 2 1 1 1 1 1 2222222 5 000 4444 000 1 000 5 1 1 22 111 22 1 1 1 1111 33333 1 1 88 1 0 6 22 2222 1 1 1 1 1 33 0 88 3 7 7 1 1 1 111111111111111 7 88 88 7 1111111111 6 111 2222222222222 2 222 222 7 1 4444444444 6 4444 00 1 999 99 3 777 0 55555555555 22 7777777 000 1 6 111 11 8 6 11 1 1 1 1 1 99 33 888888 1 555555 5 1 22 1 5 5 22 1 22 1 1 88 88 111 5 4444 1 5 66666 4444 1 1 1 1 1 1 333 1 5 1 5 1 22 22 1 88 88 111 2 1 77777 22 3333 1 000 2 1 1 1111111111 1 1 1 1 888 1 1 2 0 0 0 333333333 8888 6 444444444444444444444444 77 22 2 7 8888 7777 1 1 3 6 0 7 2 1 1 88 2 22 88 1 5 5 88888 7 22 1 0 2222 3 7 6 55 6 8888 1 11111111111 3 1 7 33333 33333333 0 88 44444444 0 1 1 1 1 22 88 1 444444444 1 88 88 1 1 1 1 1 0 1 1 1 55 1 1 22 1 1 1 3 8 44 7 88 77 22 22 333 22 1 1 1 2 1 22 22 4444 1 1 1 22 4444 6 3 3 3 8 8 7777 3 8 3 1 8 6666 1 444 6 000 5 5 5 0 66 1 77 6 3 1 1 666666666 6 0 3 1 2 6 0 5 3 8 22 8 3 2 3 3 2 0 1 22 1 1 1 1 222222 2 44 0 8 3 0 2 0 2 6 7 1 1 1 1 1 1
lowQualScore : .. . . ..... .. . . .. . . . . . . . . .. ...... . . ...... . . . ......... ........... .. . . ... . . . .. . . .. . . . ...... ..... . ... . . . . .. .. . . . .. . ... . . . . . . ... . . . . . ......... . . ..................... . ...... ... ... ...... . . ............................. . . .............................. ... ..... .. ... . . . ... . . .... . .. . .. . . .. ... ..... . . .... . .. .... ..... . .............................................. . .. .... . ............. ...................... .. . ......... . . . . . ...... . . ...... .. . . . ... .. . ... .. . .. . . . . . . . . . ....... . ... .... ... . ... . . . .. ... .. . . . .... ..... . . .. . . . .. .... . . . . . .. . .. . . . . . . ............... . .. .. . .......... . ... ............. . ... ... . . .......... . .... .. . ... .. . ... . ........... .. ....... ... . . ... .. . . .. . . . . . .. .. ...... . ...... . . .. . . . .. . .. . . .. .. ... . .... . . ..... .... . . . . . . ... . . . . . .. .. . .. .. ... . . ..... .. .... . ... . . . .......... . . . . ... . . . . . . ......... .... . ........................ .. .. . . .... .... . . . . . . . . . .. . .. .. . . . ..... . .. . . .... . . . .. . .... . ........... . . . ..... ........ . .. ........ . . . . . .. .. . ......... . .. .. . . . . . . . . . .. . . .. . . . . . .. . .. .. .. .. ... .. . . . . . .. .. .... . . . .. .... . . . . . . .... . . . . . .... . ... . ... . . . . .. . .. . . . . ......... . . . . . . . . . . .. . . . . . . . . .. . . . . ...... . .. . . . . . . . . . . . . . . .
lowQualScore : 00 0 0 55555 55 0 0 55 5 0 0 0 0 0 0 0 00 555555 0 0 555555 0 5 0 000000000 55555555555 55 5 0 000 0 0 0 55 0 5 55 5 0 0 000000 00000 0 000 0 0 0 0 00 55 5 5 5 00 0 555 0 5 0 0 0 0 555 0 3 0 0 3 000000000 7 3 333333333333333333333 3 000000 333 000 000000 0 0 33333333333333333333333333333 3 0 000000000000000000000000000000 333 77777 33 777 0 2 8 888 0 0 0000 0 22 4 44 4 6 77 000 33333 0 2 9999 0 00 6666 88888 5 9999999999999999999999999999999999999999999999 7 22 5555 7 0000000000000 8888888888888888888888 00 0 000000000 0 0 0 0 0 555555 0 0 555555 00 0 0 0 555 00 5 555 55 5 00 5 0 0 5 0 0 0 0 0 5555555 5 555 0000 555 0 555 5 0 0 00 000 00 0 0 0 7777 33333 0 0 33 0 7 7 00 7777 0 0 0 0 0 00 7 33 3 3 3 0 0 0 222222222222222 3 33 33 3 0000000000 7 777 7777777777777 5 000 000 3 0 3333333333 7 8888 22 0 222 00 2 555 2 00000000000 44 0000000 888 0 0 444 00 2 0 00 0 0 4 0 0 00 22 222222 0 000000 5 0 00 0 0 0 00 0 00 0 0 00 00 000 5 0000 0 5 55555 0000 0 0 0 0 0 0 000 0 0 0 0 0 00 00 0 55 00 000 5 0 00000 00 5555 0 555 5 0 0 5555555555 0 0 0 0 777 0 0 0 7 7 7 000000000 0000 7 000000000000000000000000 33 00 0 3 3333 0000 0 0 3 7 7 3 0 0 0 55 5 00 55 0 0 5 33333 3 00 0 7 7777 3 3 7 33 7 3333 0 00000000000 7 0 3 33333 00000000 7 33 00000000 7 0 0 0 0 00 55 0 000000000 0 55 00 0 0 0 0 0 2 0 4 0 00 4 4 22 0 4 0 8 0 66 3 55 55 00 00 000 00 0 0 0 5 0 00 00 0000 0 0 0 00 0000 7 7 3 3 0 0 0000 8 0 2 4 8 6666 4 000 7 000 7 7 7 7 99 6 99 7 5 7 0 777777777 7 7 2 0 5 7 0 6 8 0 22 0 2 5 2 2 5 7 0 00 0 0 0 0 777777 0 77 8 0 2 2 5 2 5 7 3 0 0 0 0 0 0
consensus : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--TTAAATNTNTCAAT---GGAACT-T-AGATGT---TCCGAATAG-A-TAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG-TAATTNCGACAN--NTTG-AATGACA--TGANAC-AT----AACTT----TGATTNGGA---C-TGTT-TG-CTA----AAC-TGNTNT-A-TT--AAC------GAA-GCNTGT-G-ACGTTTTTACAN-AAA-TA--TTTAN----A--T----T--G---NAAAAA--TGTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---AC---TGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TAACANAACC-ATA-----TCTAAACCTTTAGCCATACT--T-TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGTGA--CAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTTA-GCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAACATATGTACA--TA--CTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCGA---TT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATANATAAGTTATACACTGAAATCGGATGGTTATCGCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
Reference ( family-1625 ) : NNATTCTACACNNTAATATCNGAAGTATTNGAAACAAGATAATTTTAACTNCGTNAAAAACAACTTTATGGACCNTGATATNCTTTGTTTTACTGNAACNCACCTTGACTGATNAGATNNCAAATGACTCTTTAGATACTTAATGAAAACTTNGATGTGTTTTNCAGAAATGAACGTCCTAGTCATGGAGGGGGGGTACTTTAATCTATGCTTCAAATCGTNTCATTCATTCNAGGNGAAGATTAGNCTTGGAAATGTCCGNTAACTGANTCNGTTTGGATAAATGTCGAAGTCGGGTACAAGANGGANNNATNCTNTTANGTGCTGTNCTATACCGTTCCCCGAACACGCNNGTANCACGTTTTTNGAATANCCTNAACGCANGTATTGAGAAGGCCCNTGNAACTTNTCAAAAAATATAGTNTTANTA-GGTGAT-T-TAACGAAGACCATT-TAAAC-C-TAACA----AT-AA-CGCCTTAGAAATAC-A-TA-TTA---TTAAAC-AATTT-ACGA-ATGTTATNACAGAACCNACCAGAG--A--C-GAAN-CTA--CATCA--TCTGATAGATCCAATNATTGTATCAGATNC--TTAAATNTNTCAAT---GGAACT-T-AGATGT---TCCGAATAG-A-TAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ANCT----CCTGCTT-TAANTAGAAAAGTTTGGTTTTACATAAAAGGCG-TAATTTCGATNT--TTTA-AATGA-A--TGANAN-AT----AACTT----TGATTGGGA---C-TGCT-TG-NTA----AAC-TGNTNT-A-TT--AAT------GAA-GCNTGC-G-ACGTTTTTACAT-AAA-TA--TTTAT----A--T----T--G---NAAAAA--TGTATTCCNTCTAA-A-A-T-A-TAACCGTCCGNCCNANTGACAGGCCNTGGTNCGACTCTCTGAAAGNAGNCGGAAAATATCTACTAGANTANGAGACAGACTAAAGGACAAAATTGCAATACAAACCAGGCAAGGAACAGACGACGGGNNTAGATACAAACAGTCNAGAAACAAAGTAAATAACNTGAAAACGCANGCTAGAGAANANTNCTTTAATAATNTGGAAACTTCATTAAACGGTTTACAGGCATCGAAACTACGATTCCAAANCAGGTTTACTGGAAANTCNTTAGACANNTTGTTTAGGAAAACNNAGACNCTGNANCCACACCC-C--CCT-----TAAAAAGAACNTNA--GNCGCTGGGGAGGAAACCTACTCTTATNNC--GACGAAGAAAAGGCNGANCGCCTNAACGACTATTTCACNTCTATNTCGACAACCAGTGACGAGACGAATGTC--AC-ATTTCAAAATGAAAACTCGAAAACTNATNATTNTCTTTCTAATATTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAA-C---AC---TGTTAATANANATAA---A---CGTGGCCATGACTCTATAAGCCATAANACGTTTAAAGG-G-TAACANAACC-ATA-----TCTAAACCTTTAGCCATACT--T-TTTAAC-CGNTCA--TCTGGATGAAG---GGATTTACCC-GACGTTTGGAAGNTAGCGAAC---GTA-GCGCCANTATATCAAAAAAGGTGA--CAAGCCTATG--GCTTCNAATTACAGACCAATTTCNCT--CTTA-GCTGT--TGCGGCAAGNTATTTGAAAGAATCGTTTTTAAACATATGTACA--TA--CTTTTCTTNTTGNNAATAANCTCATTGTATAAGTNNCAATCNGGATCTCTGNNAGGNCATTCNACAGCATTTACCAGCTTTTAGTATACATCTTTCATCANATCTGTCAAGGCCTTTGATAGCGAATAAACAATNCNCNTGTATGGTATTCTGTGACGTANCGAAGGCNTTTGATCGCGTNTGGCNNNAGGGNCTCTTGTTCAAACTTAANGCAAANTGGCATNNATGGTANNCTNCTTAGTTGGTTATCGACAGTTATCTGAAACACAGACGTNAACAAAGAGTGTTNNTATGCAATCATCAGNATCCACTCCGAAGTANANAAACAAAAAAAACTGCNGGNGTTCCCCAANGNTCTGT-C-TAGNTCCTTTATTNTTTCAAATATACGTTAACGATATAGCCGA---TT-A-CTGTTAAGT-TTACACGAGT-GTTGTA----G---------ACGATACGTNNCTTGCTTTTACATC----TTCAAATTTTAC---GGATTTAGAAGGTATNATNAACAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAACGGTTAGTGAATTTTAATCCCCAANAGACTGAAGCTATGCTCTTCNCTCTAAGTAGAAACGTNNCAGACTACCNAATGTTATTGTTTGAAAATGTTT--TAGTTAATTTGTNNAACNTCGTAAACATTTAGGTGTT--CTTTAA-CCATGATGGAAAATG-CGTCAACACATA----AANAATATTGCTTCGTCGGCTTCAAATANTATAGACATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---A---CTTAATCGA--ATATATATATATATCGTTTNTGCGACCAGTTTTAGAATATNCATCANTNGTCTNNGATGGTTGTTCNCAGTATGNACTTCANAGATTCAAACTAGAAAAANTACAANACGAAGCAGCTAGAGTNGTTACNGGNTTGACNCGTTCTGTTTCTATAAATAAGTTATACACTGAAATCGGATGGTTATCNCTATCAGAA-AGAAGAAAAATATCAAAAATATATTACCTTGCGTATAANNTNNANNNTNNAANTNTNCCCGGTTATNTANNTNNTCTTTTCCCANNNNCANTNGGNGCAANNACNNNNTACCGACTTA-GAAA-TAGTAA-AATTA-TATTACTC----CATATTGTAGAACAGAGATAA-TGCGAAAGTCGTGCATTCCNTCTNNCATTTCTCTT---TGGAAT-CAGCTT---GA-TGACAATATTAAAG-CAGC-GCCTTCACTTTCAATCTTTAAAAATACAT--TACGCCATAATACTAAATNTAAAA---------TACCAC-CGTATTANTCTCA-TGGCAAACGATGTNTC-TCAGTTTGTCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGTTCTGTGAGTGTCAAGAGGTTATAGAAGACGCCGAGCGCTACTTCNTNNAATGTCCTANATANANCGATNAAAGAC-T----CGTCTTTTTCCGNACAACACGAGCA-TTACATCCGTTAAATATTAATCTACTACTGAGTGGAAGTGAAACTCTATCTATAG-AGATAACATNACTATTGTGGATGNTGTCCNTAACTNTATTAGNGATACCCATAGNTT
gi|1 : ATTTTACACTGTAATATTAGAAGTATTAGAAATAAGATAATTTT--TTTTGTTAAAAAC--CTTT-TAGACCATGATATTCTTTGTTTTACTGAAACGCACCTTGA-TAATCAGATACCAAATGACTCTTTA-ATACTTAATGAAAACTTTGATATATTTTACAGAAATGAACGTTCTAATCATGGAGGGGGGATACTT--ATTTATGTTTCAAATAGTGTTATTCATTCCAGGCGAA-AT--GCCTTGGAAATATTTTGTAAC-GAATCAATTTGGATAAATGTCAAAATCA-----AAAATGAAAATATACTATTAGGTG-TGTTCTATA--GT-CCCAAAAC-CGCAGATACCACGTTTTTCGA-TAACCTGAATGTAAATATTGAGAAGGCCTATGAAACTTCTCAAAA--TATCGTCCTCCTA-GGTGAT-TATAATGAAAAC-ATTCTAAAC-T-CATCATTCCAT-AA-C--CT--GAAAGAC-A-TA-TTAACCTTAAACTCACTT-ATCA-ATATTATAAATGAACCCACCAGA---------AAT-CTAGCCAT----TCT--T-GATCCAATCATTGTACCATATG-------ATATGCCA------------T-AGAAGT---TCCAGCTAACA-TAAGTGAACATAAAGCAACATTTATA----ATATTACCATTCCC---GT----ACGAGCTAAATTCTACATATAAA-AGACAAATATGGTTGTACA-ACAAAGCA--AATTTTAATCTCCTTTATGATAA-AGTTGAATC-AT----A--------TGATTGGGA---C-TGCT-TA-ATA----AAC-TGCTCT-A-TT--AAT------GAA-GCATGC-G-ACAAGTTTACAT-ATA-TA--TTTATTGAAA--T----G--G---TTAAAACTTGCATACCATCTAA-A-T-T-AATAACTGTTCGTCCAAACGACAGGCCTTGGTTCGATTC------AGAAGTTGGAAAATATCTA--AAAATAAGAGATAGACTAAAG---AAAATTGCAAT-TAAATCAGGTAAGG--CAAATGATGGGTGTAGATATAA-CAATCTAGAAACAAAGTAAATAACATAAAAAAACAAGCTAAAGAAAACTTTTTTAATAATCTGAAAATTTCATTAAACGATTTACAG---TCGAA----CGAT---AAAACAGGTTT-CTGGAAAATCATTAGACATTTTGTT---AAAAATTCAGACTCTGCATCCACATTT-CAACCTCTTTGTAAAACAAATATAAATGGCACT-------AAATATTCTCTTATTTCTTG-CAAAGAAAAGGCTGAGCACCTTAATGACTATTTTACATCTATATCGAC--CCAA-GACGAGATAAATGTCCAACGAC--CAGTATCTACAC-CAAAAACAGATGAGAGTCTTACAAATTTTGTTAT---T---TC------AGAAAATACGAT--ATATC--TGACATTCTAAAC---AC---TGTTAATATAAATAA---AGCATGTGGCCATGACTCTATAAGCCATAAGATGTTTAAAGG-GGTAACATAACC-ATA-----TCTAAACATTTAGCCATACT--T-TTTAAC-CGCTC---TCTGGATGAAG---GGATTTATCCTGACGTTTGGAAGATAGCAAAT---GTT-ACACCAATATAT--AAAAAGGTGA--CAAGCCTATA--GCTTCAAACTATAGACCAGTTTCTTTA-CTTA-GCTGT--TGTGGTAAGATATTTGAAAGAATCATTTTTAAACACATGTACA---A--CTTT-CTTCTTACAAATAAATT-ATTGTATAAATATCAATCAGGATTTCTACCAAACCATTCAACAACATTT--CAG---TTAGTATACATCTTTCATTATATCTG-CAAAACCTTTGATAGC----AAACAATTTTCATGTATAGTATTCTGTGACATATCGAAGGCTTTTGATCGTGTCTGGCATCAGGGGCTCTTATTCAAACTTAATG-AAATTGGCATTTATGGTACACTACTTAGTTGGTTATCAA--GTTATCTGAAACACAGATCTCAAC-----GTGTTGTTATACAATCATCAGAATCCACTCTTAAGTATATAAA----------TGCAGGTGTTCCCCAAGGATCTGT-CCTTGGACCTCTATTATTTCTAATATATGTTAACGATATCGCTGA---TTCA-CTATTAAGT-TTA-ACTAG--GTTGTATGAGG---------ACGATA-GTTCCTTA-TATTAT-TC----TGCAACTTCTACCCAGGATCTTGAAGGTATTATAAACTATGATCTTGAT-ATTATATCTAAATGGTCTAAACAATGGATGGTGAACTTTAATCCG-AACAAACTGAAGCTATGTTCTTCTCTTTAAG--AAAACCTGACAGACTACCTAATGTTAT-ATTTGAAAATACTTATTA--CAATTTGTTCATTCTCATAAACATCTTGGTGTTA-CTTTAAGCCATGATGGTAATTG--GTCAACACATATTGAAAGCATATTACTT--TCTGCTTCCAAGACAATACACATTATGAGACACTTAAAATTCACTATTGGAAGAAACGCA--------CTCAATCAA--ATGTATA---A-ATCGTATGTGCGTCCAATTCTAGAGTATTCTTCATTGGTCTGGGATGGTTG--CACAGT--GCACTTCACAGATTCAA--TAGAAAAACTACAAAACGAAGCAGCACGAATTGTCACAGGACTTACCCGATCAGTATCTATTCAAAAACTGTATAATGAATGTGGATGGGAACCACT-TAAAAAGAGAAGAGAAAT-TTAAAAATAT--TACCTTATGTATAATGTATACCATTCAAATATTCCAAGTTATATAAATGATCTTTTCCCACCTCTATTTGGTGCAACAACTGAATACCCACTAA-GAAA-CAGGAATAACTA-TACTACTC----CATACTGTAGAACAGAGATAA-TGCGAAAGTCATGCATTCCCTCTTCTATTTCTCTT---TGGAAT-CAGCTT---GA-TGAAAAAATTAGAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TATGCCAAAATACTAAATTTAAAA---------TACCAC-CATAGTATTCTCA-TGGCAAA-GATGTGTC-TCAGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATTTAAATGCCGATCTTTGTAGAAATCATCTGCACCCATTACCTTTCTGTGAGTGTCAAGAGGTCATAGAAGATGCTGAACACTACTTCTTTAAATGTCCTAAATAAAGCAATCAAAGAC-T----CGTCTTGTTTCAAACAACACGAGCA-TTACATCCATTAAATATTAATCTACTACTGAGTGGAAGTGAAACTATATCTATAGCAGATAAC-TTACTATTGTAGATGCTGTCCATAACTTTATTAAAGATACCCATAGTTT
gi|10 : cgACACCCAC--CCT-----TAAAAAGAACTTTA--GCCGCTGGGGAGGAAACCTANNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NC-ATTTCCAAATGAAAACTCGAAAACTTATTATTCTCTTTCTAATATTATTAT---t
gi|11 : TCTGT---TATATTCTTTATTGATT-AAATAAACATTAATGATATAGATGA---TT-AATTGTTA----TTACACG--T--TTGTG----GGAACAAGATACGAGACATAAGTTGTTTGTACATCAATCTTCAAATTTTAC---CGAATTAGGAGATGTGTTGAACAATAATTT-GATCGTTATATCAAAGTGAGCAAAACAACAGTTATTG-ATATCAATCCCTAaacaaagtctgaaatagaaga
gi|12 : GAAAAGTATTGTTGTACA-AAAGGGCA--AATTTTGATCT--TTTA-AATA------GAAAA-AT----AA--T----TGATACTGA---C-TGGTCTG-ATATTTTAACATGATGT-A-GT--AATATAGATGAA-GCTTGT-G-ACGTTTTTACTTCAAACTA--TTTAG----A--TA---T--GGCTGAAGAA--TGTATTCCAAATAA-A-CTT-G-TAATTATTCATCAAAATGA
gi|13 : acatataagcTACCGACTTA-GAAA-TAGTAA-AAATATTGTTATTC----CCAATTGTAGAACAGATGTTA-TGAAAAATGCATGTATTCCATCAGG--TTTCTTTTATACGGAAT-CAACTA---GA-AGACAGTGTAAGAT-CATCTGCATCC-TTTTCAATTGTCAA----ACATGATATG-CGTAGT-CTAAATGGAAA-------------CACACATATTACT-TTA-TGt
gi|14 : AAAATGTTT---GGTTAAT--GTGAAACTTCATAAACATTTAGTTGT-------AA-CTA--ATG-AAAATGGTGTCAA----TA----AACA--------TCGTCGGCTTCAAATAGTATAGATA-GATACTTAAAATCAAATTTATTCCA-----AATTGGAAAATA---ATTATTCGA--AAAT---TATGTTTCATTCCTAAGATCAGTGTTAGAATATACATC
gi|15 : CATGACTCTATAAGCCATACTACGCTTAAAGGTG-TAACAAAACCCATC-----TCTAAACCTTTAGCCATATT--T-TTTAAC-CGCCC---TCTTAATGAAG---GGATTTA----------TGCAAAATAGCAAAT---GTT-TCACATCTATAT-AAAAAAGGTGA--CAAAGCTATA--GTTTCAAACTAAAAAT--ATTTTTTT--CT
gi|16 : AAAGCA--AATTTCGACTT--GCTA-AAT-A-A--TAAAAT-ATCAGAAACT------GATTGGAG---CATGCT--G-CTA----AAC--GGTAC-AGTT--GTT------GAG-GCTTGT-G-AAATGTTCTCAA-AAA-TA--TTTAT----AAGT----TTAG---TCAAAATGTGTATTCCGTCTAA-A-A-CAA-TAACTGTCC
gi|17 : CCC-AAAGTTTGGAAGGAAGCGTTC---GTATGTGCTATT-TA-CAAGAAAGGAGA--CCCGTCTTTG--GCTAATAATTACAGACCTATTTCACT--TCTA-AGTGTATTG-AACAAAGTATTTGAAAGGCTCGTTTTTAAGCATATGTTCAATTA--TTTT
gi|18 : tatATC-CTATTTTCTTT----TTGC-AACT----ACTGCTT-TAAGTAGAAAAGTTTGGTTT---ATAAAAAACG-TGATTACGATAA--TTTG-AATGACA--TGATAC-AT----AACTT----TAATCTGGA---
gi|2 : atcATTCTACATATTAATATCCGAAGTATTCGAAACAAG-----TTTAACTACATAAAAAATAACTTTATGGATTTTGATATACTTTGTTTTACTGCAACTCAC-TTAACTGATGAAATTGCAAATA------TAGATA-TTAAT------TTAGATG-GTTTTCCAGA---------CCTAGT-----------GGTATTTTAATCTATGCTTCAAATCATCTCATT---TCAAAAAGAAGATTAGACTTAGAA-TGTCCGTTAACTGATTCTGTTTG------TGTTGAAGTCGGGTACAAGAGGGACCGATTTTTTTATGTGCTGTG-TATACCGTTCCCCGAACACGCCTGTAGCA---TTTTGGAATATTTTTAACACATGTATTGAAAAAGCTCTTGT--TTTGTCAAAAAATATAGTTTTAGTA-GGTGATAT-TAACGAAGACCATT-TAAATAC-TAACA----AT-AATCGTCTTAGAAATACTA-TACTTA---TTAA-C-AATTTGACAA-ATGTCATTACAGAACTAACCAGAGCAA--CTGAAA-CTA--CATCAACTCTGATAGATCCAATACTTATATCAGATACATTTAAATGTCTCAATTCTGGAACT-TTAGATGT---TCCGAATAG-AATAAGCGACCATAAAGCTAC--TTATATT-TATATC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAAAAAAGTTTGGTTTTATATAAGAGGTGATAAT---GACA------A-AATGA-A--TGACATGAT----AACTTACTTTGATTGGGA------GTT-TA-TT---------TCCTAT-A-TTTCCAT------AAACGCA-GA-A-ACAATCTTAGAT---------TTTAT---------------G---CAAAAA--TGTATTCCCTCCAATG-A-T-A-TAACCATCAGACCTACTGACAAGCCATGGTACAACTCTCTGAAAGCAGACGGA------CTACTAGACTACGAGACAGA-TAAAGGACAAAAT--CAATACAAAC---GCAAAGAACAGACGACTGGACTAAATACAAACAGTTAAGAAACAAAGTAAATAATTTGAAAACGCATGCTAGAGAACAGTACTTTAATAATATAGAAACTTTA-------GTTT-CAGGCATCAAAACTACAATTCCAAACC---TTTACTGGAAACTTCTTAAACAGATTATTTAGGAAAACAAAAATACTGAAACCATACCC-C--CCT-----TAAAAAGAACCTCA--GACACTGGGGAGGAAACCTACTTTTATAAC--GACGAAGAAAAGGCAAATTGTTTGAACGACTATTTCATTTCTATTTCAACAATCAGTAATGAAACGAATATT--AC-ATTTCAAAATGAAAACTCGAAAACTAATAATTTTCTTTCTAATATTATTATAACTAAGTCTAAAAGAGAAGATACGATTAATATCCTTGACA--CTAA-C---ACATCTGTTAGGAATGATAA---A------------------ATAAGTCACAAA--GTTTGAAGT-A-TA-CAGAAT--ATAGTAATTCTAAACCTCTTG---TACTGTTATTTAAT-AGATCA--TTT--ATCAAATGTGAATTT-CCA-GATTTATGGAAATCAGC---CCTAGTA-ATGCCACTTT-TCAAAAAAGGTAAAACAAACCT--G--GCGTCTAATTATCGACCAATTTCACT--CTTAAGCTGT--ATTGGCAAGTTAATGGAAAGAATTGTGTACAAACATATATATA--TATACTTTTCTTGTTGATAATAACCTCATT-TATAAGTTACAATCTGGATCTCTGAAAGGACATTCCACAG--TTTACCAACTTTTAG-ATATATT----ATCAAATTTGTCAAGGC-----ATAGTGAATAAACAATACACTTGTATGGTATTTTGTGATGTAGCGAAAGCATTTGATCGCGTGTGGTTGAAAGGTCTTTTGTTCAAA-TTAAAGCAAAATGGTATAAATGGTAGTCTTCTTAATTGG--ATCGACAGTTATTTAAA---CAAACGTGAACAAAGAGTATTTATATGTAAT----AGTATT---TCCGAAATAAAAAAACAAAAAAAACTGCCGGAGTTCCCCAATGTTCTGTAT-TAGCTCCTTTATTCTTTTAAATTTACATTAATGATTTAGCCGAAAATT----TGTTAAGTATTACATGAATAGTTGCA----G---------ATGATACATCTCTTGCTTTTACATC----TTCAAATTTAAT---AGATTTAGAAGGTATAATCAATAATGATCT-GATCGTTATATCAAAGTGGGCAAAACAATGGTTAGTGAATTTTAATCCCCAAAAGACTGAAGCTATACTTTTTACTCTAAATAGAAATGTTTCAAAT--CCAAAT-TTATTGTTTGAAAATGTTT--TAGTTAATTTGTAGAACACCGTAATCATTTAGGTATTTCTTTTAA-TCATGATGGAAAATG-CATCAACACATA----AATAATATTGTTTCATCAGCTTCAAATATTTTAGGCATGATGCGAAAAATCAAATTTACTCTT-----AATCGCAA---ATCTCTTAACCAAATATATATATATATATCATTTTTGCTACCAGTTTTTGAATATGCATCAATTGTTTTTGATAATTGTTCCCAATATGAA----AAAGA--CAAACTAGAAAAAATACAACACAAAGCAGCTAGAGTGGTTACTGGTTTGACGCGTTCTGTTTCTATAAATATGTTATACACTGAAATCGGATGGTTATCGCTATCAGAA-AGAAT-AAAATATCAAAAATATATTA--TTGCATATAAACTTAAAACTGGAATTCTACCCGATTATTTATTTTCTCTTTTTCCAGAAACAGTAGGAGTAAATACACCTTA-CAACTTACGAAATTCTTCC-GATTA-TGTTGTTTTCAACACA----AGAACACAACTAATTGC-AAATTCGTTTATTCCGTCATGCGTATCTATT---TGGAATACA-CTTCCCGA-GTACATTTGTAACT-CAGA-GACTTTA---TCAATTTTTAAAACT-CA---TATAACA-AACATTTATTTTAAAACGCAAATGGTACCAT-CGTA-TAATCTAACTGGTAGTCGA-ATTTCATCAGTTTCCCACG-ATCGTTTGAGAAACGGATGTAGTCATCTCAAgtttatttacactatttcc
gi|2 : ctAAAAGACGCCGAGCGCTACTTTATGCAATGTTCTATATATACTGATGAACGACTT----CGCCTTTTT-CGTTCCACACG-CCGTTTTCATCCCTTAAGTAgtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaaaaagacgccgagcgctactttatgcaatgttctatatatactgatgaacgacttcgcctttttcgttccacacgccgttttcatcccttaagta
gi|20 : ctattctacatattaatatccgaagtattcgaaacaagtttaactacataaaaaataactttatggattttgatatactttgttttactgcaactcacttaactgatgaaattgcaaatatagatattaatttagatggttttccagacctagtggtattttaatctatgcttcaaatcatctcatttcaaaaagaagattagacttagaatgtccgttaactgattctgtttgtgttgaagtcgggtacaagagggaccgatttttttatgtgctgtgtataccgttccccgaacacgcctgtagcattttggaatatttttaacacatgtattgaaaaagctcttgttttgtcaaaaaatatagttttagtaggtgatattaacgaagaccatttaaatactaacaataatcgtcttagaaatactatacttattaacaatttgacaaatgtcattacagaactaaccagagcaactgaaactacatcaactctgatagatccaatacttatatcagatacatttaaatgtctcaattctggaactttagatgttccgaatagaataagcgaccataaagctacttatatttatatcccattttctctgtttacacctcctgctttaactaaaaaagtttggttttatataagaggtgataatgacaaaatgaatgacatgataacttactttgattgggagtttatttcctatatttccataaacgcagaaacaatcttagattttatgcaaaaatgtattccctccaatgatataaccatcagacctactgacaagccatggtacaactctctgaaagcagacggactactagactacgagacagataaaggacaaaatcaatacaaacgcaaagaacagacgactggactaaatacaaacagttaagaaacaaagtaaataatttgaaaacgcatgctagagaacagtactttaataatatagaaactttagtttcaggcatcaaaactacaattccaaacctttactggaaacttcttaaacagattatttaggaaaacaaaaatactgaaaccataccccccttaaaaagaacctcagacactggggaggaaacctacttttataacgacgaagaaaaggcaaattgtttgaacgactatttcatttctatttcaacaatcagtaatgaaacgaatattacatttcaaaatgaaaactcgaaaactaataattttctttctaatattattataactaagtctaaaagagaagatacgattaatatccttgacactaacacatctgttaggaatgataaaataagtcacaaagtttgaagtatacagaatatagtaattctaaacctcttgtactgttatttaatagatcatttatcaaatgtgaatttccagatttatggaaatcagccctagtaatgccacttttcaaaaaaggtaaaacaaacctggcgtctaattatcgaccaatttcactcttaagctgtattggcaagttaatggaaagaattgtgtacaaacatatatatatatacttttcttgttgataataacctcatttataagttacaatctggatctctgaaaggacattccacagtttaccaacttttagatatattatcaaatttgtcaaggcatagtgaataaacaatacacttgtatggtattttgtgatgtagcgaaagcatttgatcgcgtgtggttgaaaggtcttttgttcaaattaaagcaaaatggtataaatggtagtcttcttaattggatcgacagttatttaaacaaacgtgaacaaagagtatttatatgtaatagtatttccgaaataaaaaaacaaaaaaaactgccggagttccccaatgttctgtattagctcctttattcttttaaatttacattaatgatttagccgaaaatttgttaagtattacatgaatagttgcagatgatacatctcttgcttttacatcttcaaatttaatagatttagaaggtataatcaataatgatctgatcgttatatcaaagtgggcaaaacaatggttagtgaattttaatccccaaaagactgaagctatactttttactctaaatagaaatgtttcaaatccaaatttattgtttgaaaatgttttagttaatttgtagaacaccgtaatcatttaggtatttcttttaatcatgatggaaaatgcatcaacacataaataatattgtttcatcagcttcaaatattttaggcatgatgcgaaaaatcaaatttactcttaatcgcaaatctcttaaccaaatatatatatatatatcatttttgctaccagtttttgaatatgcatcaattgtttttgataattgttcccaatatgaaaaagacaaactagaaaaaatacaacacaaagcagctagagtggttactggtttgacgcgttctgtttctataaatatgttatacactgaaatcggatggttatcgctatcagaaagaataaaatatcaaaaatatattattgcatataaacttaaaactggaattctacccgattatttattttctctttttccagaaacagtaggagtaaatacaccttacaacttacgaaattcttccgattatgttgttttcaacacaagaacacaactaattgcaaattcgtttattccgtcatgcgtatctatttggaatacacttcccgagtacatttgtaactcagagactttatcaatttttaaaactcatataacaaacatttattttaaaacgcaaatggtaccatcgtataatctaactggtagtcgaatttcatcagtttcccacgatcgtttgagaaacggatgtagtcatctcaagtttgatacattttttaaattctttaatacttgatgcaagatgcgacggatgcggtaatgaaaaAAAGGC-TGATATGTCATTTTCCTGACAACTCGAACA-CTACATCCGTTAGATATTAATTTACTACTGAGTGGAAGTGAAACTCTATCTATAGAAGATAACAT
gi|22 : aatCGAGCA-TTACATCCGTTAAATATTA-TCTACTACTGA-------------------------AGATAATATAACTATTGTGGATGATGTCCCTAATTGTATTAGTGATACTCATAGATT
gi|23 : AAGCAGCTAGAGTAAATACCGGTTTGACGTGTTTAGTTGCTGTAGATAAGTTAT------AAATCAGATGGTAATCGCTATCAGAA-AGAAGAA
gi|24 : TTACAGGATTAACTCGTTCTGTGTCTATTCAAAAATTGTATACAGAAATCGGGTGGCTGTCTTTGTCAGAG-AGAAGA-AAATAT
gi|25 : TTGCTAT---T---TC------AGAAAAT--GAT--ATATC--TGAAATTATAA-CCAAAC---T--TGATACATATAAGCCA---CGTGATCATTACTCTATAAGTCA
gi|27 : tGTAATAATCTAAATGCGGATTTATGTAGAACTCATCTGCATCCTACTCCGTTCTGTGAGTGTCAAGCGGTTATAGAA
gi|28 : cTG-AATGACA--TGATAC-AT----AACTT----TGATTTGGAAGTT-TATT-TG-CTA----ta
gi|29 : gagctgattatgacaaacTGTTTCTATAAATAACTTATACACTGAAATCAGATGGTTATCTCTATCAGAA-AGAAGAAAcatttccataaacg
gi|3 : -AATTA-TATTACCC----CATATTGTAGAACAAAGATAA-TGCGGAAGTCGTGCATTCC-TCTCTCATTACTTTT---GGGAAT-CAGCTA---AAATGTCAATATTAAAAACAGC-GCCTTCACTTTCAATCATTAAAATTACAT--CACGACATCATGCTTAATTTAAAA---------TACCAC-CATATTATTATCA-TGACAAACGATGTTTC-TCAGTT-GTCATGCAAAACTT-AGACACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATCCATCACCGT---------G--AAGA---TATAGAAGAct
gi|30 : GCTT---GA-TGACAATATTAAAG-CAGC-GCATTCACTTTCAATCTTTAAAAATACAT--TACagtgaacata
gi|31 : tcACGAGTA-TGACACCAGTTAGATATGAACATACTAGGGAGTGGAAGTGAAATTCTA
gi|4 : actAAGAGG-TAATAATGATAA--ATTG-AATGATA--TGATAC-AT----AACTT----TGATTGCGA------GTT-TATTTC----CAC-CAATGTCA-TA--AAC------GCA-GCTTGT-GAATATTTTT-CAA-AAA-CAATTTTAA----A--T----T--
gi|5 : tatcagatatatataaacctctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAAACATAATATTATTAAGGTG---T-T------GACCTTT-TAAAC-CCTAATT----GTCAA-CACCTTAATAATGT-AATG-TTG---TTAAAT-AATCT-ATGCTGTGTTATGACAGAACCTACCCGAA--ATAC-AAGGGCCA--CA-CA-----GATAGATCCAATTATTGTATCCGATTCTATTAAATCATTAAATGAAGGAACTAT-AAATGTACCTTCGAAT-----TAAGCGACCTTAAATCTAC--TTTTATTGTTTTTC-C---TTTTTCTGTTATTCT-AACT----CTTGCttatgcaa
gi|6 : -AATTA-TACTACTC----CATATTGTAAAATAGAGATAA-TGAGAAAGTTTTGCATTCCCTCTACCATTTCTCTT---TGAAAT-CAGCTT---GA-TGACAATATTAATG-CAGC-GCCTTCAC-TTCAATCTTTAAAGATACAT--TACGCCATATTACTAAATCTAAAA---------TACCAC-CATGTTAATCTCA-TGGCAAA-----------CAATTTGTCATGCAAGATTT-AGAAACAACTTTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCATTCAT
gi|7 : GGAAT-CAGCTT---GG-TGACAATATTAAAG-CTGC-GTCTTCATATTCAGTCTTTAAAAATACAT--TACGCCATAATAATAAATACAAAA---------TACCGC-CGTATCAATCTCA-TGACAAACGATGTGTC-TCGGTTTATCATGCAAGGCTT-AGAAACAACTGTAGTAATCTAAATGCCGATCTATGTAGAAATCATCTGCTCCCATCACCGTTCTGTCAGTGTC---AGGTTATAGAAGATACCGA
gi|8 : T--T-TATAACATGGTCAGTTCTGGATG--G---GTGTGTACCT-GATGATTGGCATCTTGCCAAT---GTA-GCACCAGTAT-TCAAAAAAGGTGA--GAAG--TATGATGCTGCCAATAACAGACCAGTCTCCCTCACTT--GCATT--TGCTGCAAG
gi|9 : aagctgctgaccctgacactatcagtacacactccaagaatgtaggaaaaagatcagcccatcatttccactaTC-CCATTTTCTCTGT--TTAC-ACCT----CCTGCTT-TAACTAGAAATGTTTGGTTTTATATAAGAGGTG---ATTATGACAA--ACTG-AATGACA--TGATAA-AT----AACTT----TGATTTTGAAT-T-TATT-TC-CTA----TAT-T--TCC-A-TA--AAC------GCA-GCGGGTAA-ACGTTTTT-CAG-AAA-CAATTTTAG----A--TTTTAT--G---AAAAAA--TGTATTCCCTCCAA-AGA-T-A-TAACCATCAGACCTACTGtccctggagcacactat
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): AATTTAGCATTATTTTATGTTTAAAGTTACTACTAATCTTGTCCCTTGCTATATTAATGACTTAATTCCAACATATGTTGGTGAGACAACACAATACTCACTTAGAAAAAGAAACA
Unaligned ( gi|21 ): TCAAACAAATATAAAGAGATATATAATTCAAATTAGGTAATTGTCAGTTTTATAAATTCACATTATTAAGCTTTACATGTTATGTTCGGAAATAA
Unaligned ( gi|26 ): TAATCGTAAGGTATGGTTTTATAAACGAGGAGACTTTGATAAATTGAATAAAAGAATCTCTAATACTAATTGGGATTTTATT
Unaligned ( gi|32 ): TAAAGCTGCTGTTCCTGATAATATCAGTGCACACTTACTCGAAGAATGCAAGAA