lowQualScore : 1 1 1 11 6666 1 1 55555555555555 1 11 2222 1 2222 4444444444444444444444444444444444 11 1 1 1 22222 2222 11 1 1111111 555555555555555555555555555 111111111 1 222222 1 33333333333333333333333 1111111111 1 22222222 1111111111111111 11111 1111 222222
lowQualScore : 4 4 777 4 4 3 6 5 5 6 22 2 0000 1 2 0 77 88888888888888 0 33 3 2222 3 0 7 9 0 1111 0 2 3333333333333333333333333333333333 0 33 3 7 6 5 7 6 00000 7777 6 555 3 88888 77 3 9999 3 3 4 0 4444 4 2 2 5555555 2 5555 888888888888888888888888888 2 88 000000000 5555 777777 4 1 1 9 2 2 55 666666 0 6 8888888888 88888888888888888888888 0000000000 7 2 9 6666666 666666 2 2 444 5555 444 8888888 99999999 2 2 2 0 44444444 2 33 7777777777777777 00000 2 55 3333 222222 44
lowQualScore : . . ... . . . . . . . .. . .... . . . .. .............. . .. . .... . . . . . .... . . .................................. . .. . . . . . . ..... .... . ... . ..... .. . .... . . . . .... . . . ....... . .... ........................... . .. ......... .... ...... . . . . . . .. ...... . . .......... ....................... .......... . . . ....... ...... . . ... .... ... ....... ........ . . . . ........ . .. ................ ..... . .. .... ...... ..
lowQualScore : 2 0 000 5 0 2 0 0 0 0 00 5 5555 5 0 7 00 88888888888888 0 88 2 5555 5 0 3 8 2 2222 2 5 5555555555555555555555555555555555 8 88 0 0 0 5 0 0 33333 1111 7 888 1 33333 88 1 6666 1 1 8 1 7777 5 2 2 0000000 2 0000 666666666666666666666666666 4 88 000000000 3333 777777 2 7 7 9 5 4 33 777777 6 3 8888888888 22222222222222222222222 3333333333 3 4 6 7777777 888888 4 4 444 3333 444 1111111 77777777 9 9 3 7 11111111 9 99 4444444444444444 66666 5 99 4444 111111 22
consensus : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTGNGTTCGAAC-TCCANCACGGTTATGTGGTGTGTCCT--------------TGA-G--CAAGACGCTTTATCCGCNAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGAT-TCGAGCATG-ATTTG--TCAAGGTTTTA----AAAACTTGT--TTCACAATCGATGTANAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGA----ATGCGGGACAGTATTGTGTTT-GTA---AGAT-A---TGAAAT-ACGAAATA-T----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCCAAA-GCAA-CACTATCAGCCAAAATACAAGGTAAACCCA-----TTACTGTAC-CAC----GT------C------G------CG-CAAAA-ACGG-G---------ATC----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCTA----------TTTTT-------------------T---GC----------TTTGTTTTA-ATGTGTCT-A-----A------TT-TT-TATATGAAT---A----TAT---TT-------TG--------TTGTTTT-TA-TTTTTTCGTGA---N----GG-G--TG----G---GGGT--AATTTTTAGTGTGTGTTT-----GGA-GGGTAGGT--G-GGTAATG--AGGGTGTGT--GTGTATAT
Reference ( gi|2 ) : CAGTCGTTTTAATTGATTAAAGAAATATTTGC-AAAG---TAAATTTGCAGCTGTTTCAAGTGAATTTAGAAGTAAAGTGGAGCGCGTCGTCCAGTGGTACAGCATCGGATTTGAGATCTGAGGTCGTGGGTTCGACCTTCCATCACGGCTATGTGATGTGTCCT--------------TGA-G--CAAGACACTTTATCCGCCAG-CTTT-ATTTACTGGTTCTACCC----AGGAAGACCTCGAGCGTA-ATTTG--TCAAAGTTTTA----AAAACTTGT--TTCACAATCGATGTAAAATTAATAATTAAAACAATAACAACTCATTTTAATTCTAAGCGATCACCATGTTAGA----TTGCGGGACAGTATTA-GATT-GTA---AGAT-A---TTAAAA-ACGAAATA-T----AG-G-AAAAGAATAATTTTGTAAACAAGGGGTAT----AGCCAAA-GCAA-CACTATCAGCCAAAATACAAGGTAAACCAA-----TTACTGTAC-CAC----GT------A------G------CA-TATTA-ACGA-G---------ATC----ACATGT------ATCAGTGTTTGGAATCGCTTTACCTGACTC-AATGAC-AAAA--A-A-TGGTCATGGATTAAACAACCCTATGTCTGATCTCACATCCCTA----------TTTTT-------------------G---GC----------TTTGTTTAA-ATGTATCT-A-----A------TT-TT-TATATGAAT---A----TAT---TT-------TG--------TTGTTTT-TA-TTTTTTCGTGA---T----GG-G--TG----G---GGAT--ACTTTTTAGTGTGTGTTT-----GGA-GGGTGGGT--T-GGTAATG--CAGATGTGT--GTGTATAT
gi|6 : CAGTCGTTTTAATTAATTAAAGAAATATTTGT-AAAG---TAAGGTTGCCGCTGTTTCAAGTGAATTTAAAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTAGGTTCGA---TCCACCACGGCTATGTGATGTGTCCT--------------TGA-G--CAAGACACCTTATCTGCCTG-CATA-ATTTACTGGTTCTACCT----AGCAAGATCTCGAGCATG-ATTTG--TCAAGGTTTTA----AAAACTTGT--TTCACAATCGATGTACAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCACATTAGA----ATGCGGGACAGTATAA-GATT-GTG---AGAT-A---TGACCT-ACGAAATA-T----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCCAAA-GCAA-CACTATCAACCAAAATAAAATGTAAACCCA-----TTACTGTAC-CAC----GT------C------G------CGCTA-AA-ACGG-GTATCCGGGTATC----ACATGT------ATCCGTGTTTGGAATCCCTTTACCTGACGC-ATTGAA-AAAA--A-A----TCAGGAATTAAACAACA--ATGTCTGATCTCTCATCCCTA----------TTTT
gi|43 : agCAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAGGTGAATTAAGAA
gi|42 : agCAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TAAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|41 : agCAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TTAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|50 : agCAGTCGTTTTAGTTAATTAAAGAAATATTTGC-AAAG---TAAGTTTACAG
gi|53 : agCAGTCGTTTTAATTAATCAAAGAAATATTTGC-AAAG---TAAGTTT
gi|51 : gCAGTCGTTATAATCAATTAAAGAAATATTTGC-AAAG---TAAGCTTGCAc
gi|48 : agTCGTTTTGATTAATTAAATAACTATTTGC-AAAT---TAAGTTTGCAACTGTTTCa
gi|46 : agctaTTGATTAAAGAAATATTAGCAAAAG---CAAGTTTGTTGCTGTT--GAGTGAACTTAGAAATAA
gi|44 : tcttTTAAAAACACATTTGC-AAAGAAGTAAATCTGTATCTGTTTCAAGTGAATTT-----TAGAGTG
gi|40 : tcgtttcgATCTGAGGTTGTGTGTTTGAAC--CCAACA-GGTCATGTGGTATGTCCTTAAATTAATATAAATAA-G--CTAGACACTTTATCCGAAAGACTTT-
gi|33 : CATGGTTGTGT--TGTGTCCC--------------TGAAG--CAAG-TGTTTTATCTGC------TT-AAT-AATGG------CT----AAAAAGATGTCCAGCATG-ATTTACATCA----TTTATATTAGATCTTGTGTCTCACAAT
gi|54 : tgggctattggtacaatccccaagtcATGTGGTGTGTTCT--------------TGA-GCACAAGACACTTTTTCCGCagtc
gi|45 : CTAG-CTTTTGTCTACCAGTTCTATCC----AGGAAGAC------------TTTG--TC----T----------AATTTGT--TTTACAATCAATGTAAA
gi|47 : TGGATCTACCCTCGCAGGGA----TTGAGC-TAGATTGG--TTAAGGTTTTA----AAAACTTGT--TT
gi|4 : AAC-CATTTTAATTCTAAGTGTTCGTCATATTAGA----AT-CTGGACAGTATTGTGTTT-GTA---AAAT-A---TGAAAT-ACGAAATA-T----TG-G-AAAAGAACA-CTTTGTAAACAAGCAGTAC----ATCCAAA-GCAA-CACTATCAGCCAAAATACAAGGTAAACTCA-----TTACTGTAC-CACATTTGT------C------G------TG-CAATA-ACGG-G---------ATC----GCATGT------ATTGGTA--TGGAATCCCGTTACCTGACCC-AATAGT-AAAA--A-A-ATAT-ATTTATTAAACATTCCTATGTCTGATCCCTTATCCCTA----------TTTTT-----------------------GT----------TTTGTTTTA-ATGTGTTT-------A------TT-TC-TATAAGA-----A----TAT---TT-------TG---------CGTTTA-TA-TTTTTTCGTGA--------AG-G--TG----GAGAGGACTAATTTTTTAGTGTGTGTTTTTA--GTG-GGGGGAGT--G-GATAATG---AGGTATGT--GTGTATAT
gi|16 : AAC-CATTTTAATTATAAGCGTTCACCATATCAGA----ATGCAGGACAGTATTGTGTTT-TTA---AAAA-A---ATAAAATACGAAAAA-T----GG-G-AAAAGAATAATTTTGTAAACCAGGGATAT----ATCCAAA-GCTA-CACTATCAGCCAAAATACAAGGTAAACCCA-----AAACTGTAC-AAC----GC------C------G------CG-CAAAA-ACGT-G---------ATC----ACATGT------AGCGGTCTTTGGTATCGCTTTACCTGAACC-ATTGGT-AAAA--A-A------ATGGATTAAACAACCCAATATCTGATTCCTTATCCCTA----------GTTTT-------------------atcataatttatatatagactatgatattcttcatgttgatattatgtcccaccatagttttattttaatgagcctatatccatataaagcaaatacaagtataaacattacaaaaatagatatttttgctgagatttggtgaggcatattgtaacatcaattatatgaatgtttttcactacagaccaaaatataaacttaccctttttt
gi|7 : tgtgAACT-ATTTCAATTCTAAGCGTTCACCATATTAAA----T-GCGGGACAGTATTGTGTTT-GTA---AAAC-A---ATA-----CGAAATA-T----AG-G-AAAAAAACAATTT--------------------------A-ACAA-CACTACCAG-------------TAAACCA------TTACTGTAC-CAC----GTTCGCCGA------G------CA-AA--A-ACTG-G---------ATC----ACATGT------ATCGGTG----------CTTTACCAGACCC------C-----------T--TCATGGATTAAACAACCCTATGTCTGACCCGTTATCCTTA----------TTTT--------------------A---GT----------TTTGTTTCA-TTGTCTCT-A-----A------TT-TC-TATATTAAT---A----TAT---TT-------TG--------TTGTTGT-TT-TTATTT--------T----AA-G--TG----G---G--T---TTTTTTAATCTATATTT-----ATG-GGG-ACGT--G-AGTAAT---TAG-TGTGT--TTGTACATtaatgtgtct
gi|8 : gtgCATTTTAATTCGAAGCGTTCACCATATTAGAAAATTTG----ACATT-TTGTGTTT-GTA---AAATCA---TGAAAT-ACAAAATG-T----GG-A-AAAAGTACAATGTTGTAAACAAGGGATAT----ATCCAAAAGTAA-CACGATCAGCCAAAAAACAAGGTAAGTCCA-----TTGCTGTAC-CAT----GT------T------GGTTGCACA-TAT---ACAG-A---------ATC----ACATGT------ACCGGTGTTTTGAATCCCTTCACCGGACTC-ACTAAT-GAAC--G-ATTAATCATGGATTAAAGAACTCTATGCCTGATCCTTTATCCCTGAATAACAGTCTTTTT-------------------T---GT----------TTTGTTTTA-ATGTGTTT-A-----ATGACAGTT-TT-TATATCA-----A----TAT---TT-------TG--------Tttcatatatatcatttctttatattaatattatgtcaaaactagcataaatatttttttaaatgaccctttatccatataaaacaaatgaaaacatttcaaaaatagattttttttgctgaggtttgaggagacacatt
gi|12 : agAGCGTTCACCATATTGGA----ATGCGGGACAGTTCTG-TCTTTGTA---AGAT-A---TAAAAT-AAGAACTA-T----GG-G-AAAAGAACAATTTTAGAAACAAAGGGTAT----ATCCAAA-GC---CA---------AAAATACAAGGTAAACCCA-----TTACTGTAC-CAC----GT------C------G------TG-CAAAA-ACTG-G---------ATC----ACATGT------ATAGGTGTTTGGAATTCATTTACCTGGCAC-AAAGAT-AAAA--AGA-TAATCATGTATTAAACAACCCAATGTCTGATCCCTTATCCATA----------TTTTT-----------------------GT----------TTTGCTTTA-ATGCGTCT-A-----A------TT-TT-GATATAAAT---ACAATTAT---TT-------TA--------TTGTTTA-TA-TTTTTCC-------------G-G--TG----------------------GTGTGTGTGT-----GGGTGGGTGGG---T-GGGGGTG--GGGGGGTGT--ATGTGTGTaaaacccactctgttttttctttaaaatgagcttttagcaatataaaacaattgataaaattacacacatagattttatttgctgaggttttgggagg
gi|15 : GCGTTCATCATATAAGA----ATGCGAGACAGTATTGTGTTT-GTA---AGAT-A---TGAAAT-ACGAAATA-T----AG-GTAAAAAAACAAATTTGTAAACAAGGAGTAT----ATCCAAA-ACAA-TACTATCAGTCAAAATACAAGGT-AACCCA-----TCACTG-----------------------------------------------G---------ATC----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCCAAAGGGCAAAAA--A-A-TAACCATGTAATAAACAACTCTATGTCTG--CT-------------------------------------------------C----------TTTGTGTCA-ATGTGTCT-T-----A------TT-TT-TATATTAATATAA----TAT---TT-------TA--------TTGTTTT-TA-TTTTTCCGTG----T----GGAG--TG----G---GGGT--AATTTTTAGTCTATGTTT-----GGC-GGGAAGGT--G-GGTAACG--
gi|49 : tGCGTTCACCATATTAGA----ATGCGTGATATTTTTATGTTT-GTA---AAAC-A---TGAAAa
gi|11 : TCACCATATAAGA----ATGCGGGACAGTATTG-GATT-GTA---AGAT-A---TGAAAT-ACGAAATA-TC---AG-G-AAAA-AACAATTTTGTAAACAAGGAGTAT----ATCCAAA-GCAA-CATTATCAGCCAAAATACAAGGTAAACACA-----TTACTGTAC-CAC----GT------C------G------TA-CAAAA-ACGG-G---------ACC----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-G-TAGTCATGGATTAAACAACCCTATGTCTGATCTCGCATCCCCA----------TTTTT-------------------T---GC----------TTTGTTTTA-ATGTGTCTAA-----A------TT-TT-TATATGACT---A----TAT---TT-------TG--------TTG--TT-TA-TTTTCTA--GA---G----GG-G--TG----G---GGGT--AATTTCCAGTGTTTGTTT-----GGA-GGGTAGAT--G-GGTAATG--
gi|20 : tTCACCATATTTGA----ATGCGGGACAGTATTG-GGTTTGTA---AGGT-A---TAAAAT-ATGAAATA-TATATAG-G-AAAAGAACAATTTTGTATACAAGGAGTAT----ATCCAAA-GCAA-CACTATCAGCCAAAATGCAAGGTAAACCCA-----TTACTGTTC-CAC----GT------C------G------CG-CAGAA-ACGG-G---------ATCATATACATGC------ATCGGTGTTTGGAATCCCTTTACCTGAC-C-AATAAC-AAAAACA-A-TAATCATGGATTAAACAGCTCTATGTCTGATCCCTCATCCCTA----------TTTa
gi|10 : gtgtGAGACAGTATTGTGTTT-GTA---AGAT-A---TGTCAT-ACGAAATA-T----AA-G-AAAAGAACAATTTTGTAAACAAAGAGTAT----ATCCAAA-ACAA-CACTATCAGTCAAAATACAAGGTAACCCA------TCACTGTAC-CAT----GT------C------G------CG-CAAAA-ACTG-G---------ATC----ACATGT------AT------TTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--ACA-TAATCATGTAATAAAAATCTCTATGTCTGATCCCTCATCCCTA----------TTTTC-------------------T---GC----------TTTGTGTTA-ATGTGTCT-T-----C------TT-TT-TATATGAAT---T----TAT---TT-------TG--------TTGTTTT-TA-TTTTC-CGTGA--------GG-G--TG----G---CGGT--AAATTTAAGTGTATGTTTTTGGGGGA-AAGTGGGTAAT-GAGGGTG--TGTATGTGT--GTGTATATc
gi|24 : TATTA-GAAT-GCATATAAAT-AGCATTAAAT-ATGATTTA-T----CTTG-AAAAGAACTACTTTGTAAG----------------------GCAA-CACCACAAGCCAAATTACAAGGTAGACCAACCACATTCCT-TATTCAT----AT------A-------------TA-CATTC-GGGACG---------ACC----ACATGTGACAGCATCGGTGCTTGGAACCGCTTTACATGATGC-AATAA--AAAA--A-A----TCA-AGATTAACCAACGCTATGTCTGGTCCCagtatatatataca
gi|32 : taccaT-A---TTCAAC-AGAAAATACT----GG-G-AAAAGAACCATTTTGTAATCAAAGACTAC----ATGCAAA-GCAA-CACTTGGAGTCATAATAGAAGGTATACttcta
gi|38 : accattaataatttaatcattcacagtagaaagcatacaaacgacatcgcgcgttA-T----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCCAAA-GCAA-CACTATCAGCCAAAATACAAGTTAAACTTA-----TTACTGTAC-
gi|13 : ATTTTGTAAAGAAGAGGTATCATAATCGAAA-GCAA-CACTATCAGCCAAAATACAAGGTAAACCCA-----TTACTTTGC-CAT----GT------C------A------CA-CAAAA-ACGG-G---------ATC----TCATGT------AAAAGTGTTTGGAATCCCTTTACCTGTCCC-AATGAC-AAAA--A-A--AGTCATAGATTAAACAACCCTATGACTGATCTCTCATCCCTA----------TTTTT-------------------T---GC----------TTTGTTTTA-ATGTGTCT-A-----A------TT-TT-TATATGAAT---A----TAT---TT-------TG--------TTGTTTT-TA-TTTTTTCGTGA---TCAAAGG-G--TG----G---GGGT--AATTTTTAGTGTGTGTGT-----AGA-GGGTAGGT--G-GGTAATG--AGGGTGTGT--GTATACATatcatcgcgc
gi|21 : ATTTTGTTAACAAGGTGTTT----ATACAAA-GCAAACACTATCTGCCAAAATACACAGTAAGCCCA-----TTACTGTAC-CAC----GT------ACGTTGCG------CA-TATAA-Agtatatatagcatatatagactatgatattttcatattaa
gi|19 : TTGTAAACAAGGG-TAT----ATCCAAA-GCAA-AACTATCAGCCAAAATACAAGGTAAACCCA-----TTACTGTAC-CAC----GT------C------G------CG-CAAAA-ATGG-G---------ATC----ACAgcctaaaaacccatgattaaccctttgttcctacaaaaacatttttgttcgttttgttttaatgtgtctaattttcgtatgaatatattttgttgttgtttttattttttcatgggtggggttggtaatgttcagtttgtgttgggtgggagggggcgaaggcaatga
gi|14 : TGTATTCAAGAGGTAT----AACCAAA-GCAA-CACTATCAGCCAAAATACAA----AACCCA-----T------AC-CAC----GTCG----A------G------CA-AA--ACACGG-G---------ATC----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTAATAC-AATGAC-AAAC--A---TAGTCATGTAATAAACAATCGTATGTCTGATCTCTCGTCCCTA----------TTTTT-------------------T---GC----------TTTGTTTTA-ATGTGTCT-A-----A------TT-TT-TATATGAAC---A----TAT---TT-------TG--------TTGTTTT-AATTTTTTTCGTGA---G----GG-G--TG----G---GGGT--AATTTTTAGTGTGTGTTT-----GGA-GGGTAGGT--G-GGTAATG---AGAT-TAT--GTATATATaccctatgtctgttctctcatccttatttttttgctttgttttaatctttatatgaatatattttgttgtttttattttttcgtgaggggttggggtaatttctagtgtgtgtttgaagggtaggtttgtaatgaggttgtgtgggtgtatagaacatatatagactattatattgtttatactaat
gi|17 : acAT----ATCCAAA-ACAA-CACTATCAGTCAAAATACAAGATAACCCA------TCACTGTAT-CAC----GT------T------G------CG-CAAAA-ACTG-G---------ATC----ACATGT------ATCGGTGTTTGAAATCCCTTTACCTGACCC-AATGAC--------------T--TGTATTAAACAACTCTATGTCGGATCCCTCATCCCTA----------TTCTT-------------------T---GC----------TTTGTGTTT-ATGTGTCT-T-----A------TT-TTTTATATGAAT---A----TAT---TT-------CG--------TTGTTTT-TA-TTTTTCCGTGA---A----GG-G--TG----G---AGAT--ACTTTATAGTGTGTGTTT-----GGA-GGGTAGGT--G-GGTAATG--AGGGTGTAT--atatggcataatagactatgatattttcatattaat
gi|18 : TGTAC-CAC----GTTTCTTGC------G------CA-TATAC-ACGG-G---------GTC----TCATGC------ATCGCTGGTTTGATTCCATTTACCTGATCC-AATAAT-AAAAT-A-A-TATTTATGGA-TAA--AACCCAATGTCTGATCCTTTA-CCCTA--------------------------------------ACAAAAAAACAGTT--TTTAATATGTGTCT-AGTCACA------TTCTT-TATATCAAT---A----TAA---TT-------Ttt
gi|39 : -AATGAC-AAAA--ACA-TAGTCATGGATTAAACAACCCTTTGCCTGATCTCTTATTCCTA----------TTTTT-------------------T---GC----------TTTGTTTTA-ATGTGTCT-A-----A------TT-TT-TATATaaaaccaatcctattttttttcttttaaatgtgcatatacatacattgtaacaaataatagcattacaaaaacacattttatttgcaaaggttttgaggggc
gi|1 : -AAAA--A-A-TA---ATGGATTTAACAACACTATATCGGATCCCTTATCTCTG----------TTTTTAAGGGGGAGGGGTGGGGGTG---GG----------TTGGATTGA-AGAT-TCT-A-----A------TT-TT-TATTTGAAT---G----TATTTCTT-------TG--------TTGTTTA-TA-TTTTTCCGTGAGGTT----GG-GGATGGGGTG---GGGT--AA-TTTTAGTGTGTGTTA-----GGA-TGGGAGGT--G-GATAATG--a
gi|19 : AAA--A-A-TGG-----GATCA--CAACCCTATGTCTGTTCTCTCATCCTTA----------TTTTT-------------------TT--GC----------TTTGTTT----------T-A-----A------TC-TT-TATATGAAT---A----TAT---TT-------TG--------TTGTTTT-TA-TTTTTTCGTGA---G----GG-G--TT----G---GGGT--AATTTCTAGTGTGTGTTT-----GAA-GGGTAGGT--T-TGTAATG--AGGTTGTGTGGGTGTATAgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcattataatcatatatactatgatataattcatattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataattacaaataaggtttgggaaggcacattttaacatttcaatctatgtttatttttcgcttcaggccgaaacataaacatacccgttttttcgcgaaaacaaatatcactgacgaaattatacattgtcaattcaaaaatgcaaacaattgtgtaaaagataattatgtaactatcagtatataaataaaatatgtatagattgatttaatatggcaatttctcaggtatcacgttggatctggtgcctctgacatgtacatgagacaggaaattgacgattagaatcttttaaaaatgctaaattgtggcctgtgcatattttgtttgcaacaactgaatcaccattgcccctttactgtttcaaacatttaattatatgttttgtatttcagggtacacttttaaacggaaaaggaaatca
gi|28 : ttgtaaacaagggtatatccaaagcaaaactatcagccaaaatacaaggtaaacccattactgtaccacgtcgcgcAAACAACCCTATGCCTGATCTTTCATCCCTT----------TTTTT-------------------T---GC----------TCTATTT----------C-A-----A------TT-TT-TATATGAAT---A----TAT---TT-------TG--------TTGTTTT-TA-TTTTTTTGTGA---G----GG-A--TG----G---GGGTA-ATTTTTTTGTGTGCGTTT-----GGA-GGGTAGGT--G-GGTAATG--AGGGTGTGT--GTATATATgaacatatatagactattatattgtttatactaat
gi|21 : A----------TTTTT-------------------GTTCGT----------TTTGTTTTA-ATGTGTCT-A-----A------TT-TT-CGTATGAAT---A----TAT---TT-------TG--------TTGTT----G-TTTTT------------------------------------ATTTTTTCATGGGTG----------------GGGT--T-GGTAATGTTCAG-TTTGT--GTatatatagcatatatagactatgatatttttcatactaa
gi|23 : attttgttaacaaggtgtttatacaaagcaaacactatctgccaaaatacacagtaagcccattactgtaccacgtacgttgcgcatataaagcctaaaaacccatgattaaccctttgttcctacaaaaac----------TTGTT-------------------T---GC----------TTTGTTTTA-ATGTGTCT-A-----A------TT-TT-TATATGAAT---A----TAT---TTGAATATATGAATATATTTTGTTTTTTA-TTTTTTCGTGAG--T----GG-T--TG----G---GG-T--AATTTTAAGTGTATGTTT-----GGA-GGGTAGGT--G-GGTAATG--AGGGTGTGT--GTATATATtgggtgggagggggcgaaggcaatga
gi|5 : tTTTTGATGTGTGTTT-----GGA-AAA-GAGT--TAGGTAATG--AGGGTGTGT--GTGTATATatatatatagatatttttcatattaatattatgtaaaacccaccatattttttctttgaaatgaggttatatccata
gi|36 : aTTTAGTGT--GTTT-----GGA-GGGAAGGT--G-GGTAATG--AGGGTGTTT--GTATATAatagcatatatatactaggatattcttcatatcaatatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacacatactaacattacaaataaaatatttgctgaggtttggcacggcatattctaacctatcaatcgccttcaggccgaaatattttcacttagcaaaaataactgaggaaattatacattttaatttaaaaatacaagcatttgtgtaaaatatatgaaactattagtatgtatataaaatatatttaaaagtcagattgatttaacattgaaagttctcaggtacaaatgtccaaatatttccaaccttgtgcctgtacgtatctgagacaggagattgacgattataatattttaataaattctgaatagtggcctgtacatattttgtttcaaacaacttaaacaacattgactttttactgtttcagtcatttaattacgtgttctgtatgtctatatacacttttaaactgaaagggaaataaatatgcctag
13 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|3 ): GAATTTTAGAGTGTGTTTGGAGGGGAGGTGGGTGATGAGGGTGTGTATAGCTACACAGATACATGTATATAGCAACTATAGATTGTGATATTCCTCACATCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAAACAATGATAACATTACAAAAAATAGATTGTATTGCTGATGTGTGGGGAGGCATATTTTAACAGATCAATCTATTTTTATTTTTCGCTACAGGCCAAAATATGGATTTACCCGTGTTTATACGACACAAAAATCACTGACGAAATAATACATTGTCAATTTAAAAATATGCAAGCATTTGTGTAAAAATATATTACTATCAGTATGTAAATCAATATGTTTAAAAGTCAGATTAATGTAACATAGAATTTTCACAGTTACTCATTTCCGAGTATTTTCCAACCTGGTGCCTGCGATAGATGCCTGAGACATGAGACTGACGATTAGCATCTTTAAAAATTCTGAATTGTGACATGTGCATATTTTGTTTCAAACAATTGAATCATCATTTGTATGTTTCAAACATTTAATTCCATGTTCTGTATTTCACTATACACTTTTAAACGGAAAGGGCAAGCACATAT
Unaligned ( gi|9 ): TATTTGCTGAGGTTTGGGGAAGGGTATTTTTATATGTCCATCTATATTTATTTTTCGCTGCCTGTTTTTTTTTCAACAATGAAATTTCACTGACGAAAATATACATTGTCAAACACAGAGATTTTAAAAATTTAAGTATCAGTTTGTAAAATTGACAGACAATATCAAAGTAGATTTAGAGTCAGATTTACTTCACATAGAAATGTCTCCGGTATCAATCTCCGACTTTTTCAAACTTGTGACAGCTACATGTATTTGAGGCAGGCGATTGACAAAATAGCCTCGTCCAAAACGGTCAAACTGTCACCTACATGTTTTTTGTGTTTCCGACAACTGAATCCGGCATCATTGAATTAGTTGTCGTCTTTTTTTTTTCGATTTCAAACATTTAATTATGTAGTTATGTATACAATGTAAAATAAATAAGGAAAACAC
Unaligned ( gi|22 ): AGTATGTAAATAAAATATGTTTAAGAGTCGGATTAATTTAACATAGAAATTTCTCTGGTACTAATTTCTGCATATTTCTGACCATGTGCCTGCCACACATACCTGAGACAGGAGATTGATGATTGCTAAATTGTAGCCTGAACATATTTTGTTTCAAACAATTGAATCATTGACCTTTTTCTTTTTCAAATTCTGTGTTCTGTATTTCAGTATACATTTTTAAATGGAAAGGGAAAGCACA
Unaligned ( gi|25 ): ATATCACTAACGAAAGCATAATACACTATAACTAAGAGAGATTTTTTTTTAAAAAAATGCAAGCGTTTGCGTATAAATGTAAATAGCCGCGTGTGTGTCAGTGCGTAGAGATTACAAATCATGTTTAAGAGTCGGATTCTCTATAGATAGACATGTCTTCGCTGCTATTTTCCCAAATATTTTTAACGTGTGACTGCGACCCTAAGGATCTGCCTGGAAC
Unaligned ( gi|26 ): TTCTCAGGTATTGATTTCTGAATATTTCCGAGCTGGTGCCAGCGACATGTACCTGGGACAGGAGATTGTAGGTTAGCAGCTTTTAAAATTTCGAATTGTGGCCTATACATATTTTGTTTCCAACAACTGATTCACCCTTGACATTTTTTCTGTTTTAAACGTTTGATTCTATGTTCTGTATTAATTTTTTATATACACTAAAG
Unaligned ( gi|27 ): ACATTTTGACATACAGCAGCATAACTCCATTCTATGTTTGTCGCTACAGGGTACATGTATACGATATAAACCCTACCTATTTTTAATGAAGACAATTTCACTGATGAAACCAAACATTGCCAACTGCAGAGATGCAGAGTATTGTGCAGTATTTTTGGGGTATCAGTAAATTGTTATATTGATGAACAATAATATGTA
Unaligned ( gi|29 ): AACTATCAGTATGTAAATAAAATAGTTGATCATACTAATTGAACATAGACATTTCTTATGAACCTGAGGCAGGAGATTTATGATTAACATATTTTAAAAATATTTTTTGTTGCTAGCAACTGAATTCTCTGTTTTAAACATTTAATTCTATGTTTTATAGTTCTGTATAC
Unaligned ( gi|30 ): CATTTGTATAAATCTAAACATCAAGCAATCAACCTGTTTTCAAGTATAAGTTAAATTCACTTTACATTGAAATTTCTCTGGTACCATCTTCCAAATAACTCTAAACATATGTCTATCTAAAGTAGGAAAGATTGACGATAAACGTATTTTAGCATTTAACTC
Unaligned ( gi|31 ): ATTCAATATCATTTTAAAAAAATGACATTTTCACAACTTTAGAATATCAAAATAGGATTCACAGCCATATTTTCTTTATACAGAAATTCTCATTTCCAAACTGACGACTGCTACATGTACCCGAGTTAACCTATTGACAAACAGCCTCATGAAAC
Unaligned ( gi|34 ): ACTTGCGACTGTGAACCCATTTATAGTCTAAGTGTTCACAGCATGCATACACATTTTGTAAAAATATAAAATACCGGAGAAAAAACACTGTGTAAAGATAAGAGTCAAGGTGCAAGGTAAACCC
Unaligned ( gi|35 ): GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTGTGAAGCATATATAGACTATGCTGTATTTCATATTAA
Unaligned ( gi|37 ): AACTTATCATTAACGATGATATTCTAATATATTGTCAAATCAAGAGAAATTTTAAAAATGCATGCGTTTGTTTAAAAGAGGTAAATAACAGCATG
Unaligned ( gi|52 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTCTCATATAAAT
Alignments
lowQualScore : 3333 44444444444444 11 1111 1111 222 11 1111 11 1 111 111111 111111111111111111111111111111 111111111111111111 111111111111111111 111111111111
lowQualScore : 3 666 1 2 3 2 0 1 4444 1 6 1 77777777777777 8 11 0 2 2222 1 8 3 2 6 7777 0 999 55 11 999 0 7777 11 1 4 0 0 000 4 33 2 2 8888 2 2 4444 2 2 55555 4444 8888 2 4444 333 222 2 33 999999999 444 5555 777777 2 4 55 333333 888888888888888888888888888888 555555555555555555 2 4444 99999999999999 2 2 666666666666666666 444 5555 444 888 2 1 111111111111 444 777777777 5 33 55555 2 7 55555 33
lowQualScore : . ... . . . . . . .... . . . .............. . .. . . .... . . . . . .... . ... .. .. ... . .... .. . . . . ... . .. . . .... . . .... . . ..... .... .... . .... ... ... . .. ......... ... .... ...... . . .. ...... .............................. .................. . .... .............. . . .................. ... .... ... ... . . ............ ... ......... . .. ..... . . ..... ..
lowQualScore : 6 444 0 5 0 5 7 0 3333 0 5 4 00000000000000 0 00 8 8 8888 0 0 2 0 0 0000 8 888 00 00 666 8 0000 00 0 0 6 7 000 4 99 9 9 9999 9 9 5555 1 1 66666 5555 9999 1 5555 777 555 4 22 444444444 111 0000 222222 4 4 00 777777 888888888888888888888888888888 555555555555555555 1 5555 88888888888888 2 2 444444444444444444 111 0000 111 222 7 7 555555555555 777 999999999 0 11 66666 2 5 66666 99
consensus : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCGA-CT-CCANCACGGCTATGTGGTGTGTCCT--------------TGA-G--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGATCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AGG-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
Reference ( family-1622 ) : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTGNGTTCGAACT-CCANCACGGTTATGTGGTGTGTCCT--------------TGA-G--CAAGACGCTTTATCCGCNAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGAT-TCGAGCATGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTANAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----ANG-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
gi|1 : -AAAA--A-A-TA---ATGGATTTAACAACACTATATCGGATCCCTTATCTCT-----------G----------T-------TTTTAAGGGGGAGGGGTGGGGGT-GGG----TTGGATTGAAGATTCT-A-----A------TT-TT-TATT------------------TGAAT---G----TATT---TCTTTGTTGTTTATA-TTTTTCCGTG----AGGTTGGGGATGGG---GTGGGG----TAA-TTTT-AGTGTGTG--TT-----AGGA-TGGGAGGTG-----GATAATG
gi|10 : G---AGACAGTATTGTG--TTTGTAAGAT-A-TGTCATACGAAATAT----AA-G-AAAAGAACAATTTTGTAAACAAAGAGTAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGGT-AACC-----CATCACTGTACC----AT----GT-C----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------A------TTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--ACA-TAATCATGTAATAAAAATCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTC------------------T-GCT----TTGTGTTAATGTGTCT-T-----C------TT-TT-TATA------------------TGAAT---T----TATT---T---TGTTGTTTTTA--TTTTCCGTG----A-G-----GGTGGC---G----G----TAA-ATTTAAGTGTATGTTTT-----TGG--GGGAAAGTG-----GGTAATGAGG--GTGTGTATGTGTGTgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcattataatcatatatactatgatataattcatattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataattacaaataaggtttgggaaggcacattttaacatttcaatctatgtttatttttcgcttcaggccgaaacataaacatacccgttttttcgcgaaaacaaatatcactgacgaaattatacattgtcaattcaaaaatgcaaacaattgtgtaaaagataattatgtaactatcagtatataaataaaatatgtatagattgatttaatatggcaatttctcaggtatcacgttggatctggtgcctctgacatgtacatgagacaggaaattgacgattagaatcttttaaaaatgctaaattgtggcctgtgcatattttgtttgcaacaactgaatcaccattgcccctttactgtttcaaacatttaattatatgttttgtatttcagggtacacttttaaacggaaaaggaaatca
gi|11 : TTCACCATATAAGAATGCG---GGACAGTATTG-G--ATTGTAAGAT-A-TGAAATACGAAATATC---AG-G-AAAA-AACAATTTTGTAAACAAGGAGTAT----ATCC-AAAGCAA-CATTATCAGCCAAAATACAAGGTAAACA-----CATTACTGTACC----AC----GT-C----GT---ACA-A-AA-A--CGGG---------AC---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-G-TAGTCATGGATTAAACAACCCTATGTCTGATCTCGCATCCCC-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCTAA-----A------TT-TT-TATA------------------TGACT---A----TATT---T---TGTTG--TTTA-TTTTCTA--G----AGG-----GGTGGG---G----G----TAA-TTTCCAGTGTTTG--TT-----TGGA-GGGTAGATG-----GGTAATGAgtatatagtatatatataca
gi|12 : AGCGTTCACCATATTGGAATGCG---GGACAGTTCTGTC--TTTGTAAGAT-A-TAAAATAAGAACTAT----GG-G-AAAAGAACAATTTTAGAAACAAAGGGTAT----ATCC-AAAGC---CA---------AAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GT---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATAGGTGTTTGGAATTCATTTACCTGGCAC-AAAGAT-AAAA--AGA-TAATCATGTATTAAACAACCCAATGTCTGATCCCTTATCCAT-----------A------------------TTTT------------------T-GTT----TTGCTTTAATGCGTCT-A-----A------TT-TT-GATA------------------TAAAT---ACAATTATT---T---TATTGTTTATA-TTTTTCC---------------GGTG-------------------------GTGTGTG--TG-----TGGGTGGGTGGGTG-----GG-GGTGGGG--GGGTGTATGTGTGT
gi|13 : ATTTTGTAAAGAAGAGGTATCATAATCG-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTTTGCC----AT----GT-C----AC---ACA-A-AA-A--CGGG---------AT---C----TCATGT------AAAAGTGTTTGGAATCCCTTTACCTGTCCC-AATGAC-AAAA--A-A--AGTCATAGATTAAACAACCCTATGACTGATCTCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTGATCAAAG-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TG-----TAGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATACAT
gi|14 : TGTATTCAAGAGGTAT----AACC-AAAGCAA-CACTATCAGCCAAAATACAA----AACC-----CAT------ACC----AC----GT-C----GA---GCA-A-AACA--CGGG---------AT---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTAATAC-AATGAC-AAAC--A---TAGTCATGTAATAAACAATCGTATGTCTGATCTCTCGTCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAC---A----TATT---T---TGTTGTTTTAATTTTTTTCGTG----AGG-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGA--TTATGTATATATATgtatatatagcatatatagactatgatattttcatattaa
gi|15 : acGCGTTCATCATATAAGAATGCG---AGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-GTAAAAAAACAAATTTGTAAACAAGGAGTAT----ATCC-AAAACAA-TACTATCAGTCAAAATACAAGGT-AACC-----CATCACT------------------------------------------GG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCCAAAGGGCAAAAA--A-A-TAACCATGTAATAAACAACTCTATGTCTG----CT--------------------------------------------------------------CT----TTGTGTCAATGTGTCT-T-----A------TT-TT-TATA------------------TTAATATAA----TATT---T---TATTGTTTTTA-TTTTTCCGTG----TGG-----AGTGGG---G----G----TAA-TTTTTAGTCTATG--TT-----TGGC-GGGAAGGTG-----GGTAACGAatggcataatagactatgatattttcatattaat
gi|16 : tAAC-CATTTTAATTATAAGCGTTCACCATATCAGAATGCA---GGACAGTATTGTG--TTTTTAAAAA-AATAAAATACGAAAAAT----GG-G-AAAAGAATAATTTTGTAAACCAGGGATAT----ATCC-AAAGCTA-CACTATCAGCCAAAATACAAGGTAAACC-----CAAAACTGTACA----AC----GC-C----GC---GCA-A-AA-A--CGTG---------AT---C----ACATGT------AGCGGTCTTTGGTATCGCTTTACCTGAACC-ATTGGT-AAAA--A-A------ATGGATTAAACAACCCAATATCTGATTCCTTATCCCT-----------A----------G-------T---------------------------------TTTTAATGTGTCT-
gi|17 : tgtgAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGATAA-CC-----CATCACTGTATC----AC----GT-T----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTGTTTGAAATCCCTTTACCTGACCC-AATGAC--------------T--TGTATTAAACAACTCTATGTCGGATCCCTCATCCCT-----------A----------T-------TCTT------------------T-GCT----TTGTGTTTATGTGTCT-T-----A------TT-TTTTATA------------------TGAAT---A----TATT---T---CGTTGTTTTTA-TTTTTCCGTG----AAG-----GGTGGA---G----A----TAC-TTTATAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTAT
gi|18 : TGTACC----AC----GT-TTCTTGC---GCATATAC-A--CGGG---------GT---C----TCATGC------ATCGCTGGTTTGATTCCATTTACCTGATCC-AATAAT-AAAAT-A-A-TATTTATGGA-TAA--AACCCAATGTCTGATCCTTTA-CCCTAACAAAAAAACA----------G-------TTTT------------------T-AAT------------ATGTGTCT-AGTCACA------TTCTT-TATA------------------TCAAT---A----TAAT---T---Ttt
gi|19 : TTGTAAACAAGGG-TAT----ATCC-AAAGCAA-AACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--TGGG---------AT---C----ACAaaaaccaatcctattttttttcttttaaatgtgcatatacatacattgtaacaaataatagcattacaaaaacacattttatttgcaaaggttttgaggggc
gi|19 : AAA--A-A-TGG-----GATCA--CAACCCTATGTCTGTTCTCTCATCCTT-----------A----------T-------TTTT------------------TTGCT----TTGTTTTAAT---------------------C-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AGG-----GGTTGG---G----G----TAA-TTTCTAGTGTGTG--TT-----TGAA-GGGTAGGTT-----TGTAATGAGGTTGTGTGGGTGTATAaccctatgtctgttctctcatccttatttttttgctttgttttaatctttatatgaatatattttgttgtttttattttttcgtgaggggttggggtaatttctagtgtgtgtttgaagggtaggtttgtaatgaggttgtgtgggtgtatagaacatatatagactattatattgtttatactaat
gi|2 : ttgtaaacaagggtatatccaaagcaaaactatcagccaaaatacaaggtaaacccattactgtaccacgtcgcgcCAGTCGTTTTAATTGATTAAAGAAATATTTGC-AAAG---TAAATTTGCAGCTGTTTCAAGTGAATTTAGAAGTAAAGTGGAGCGCGTCGTCCAGTGGTACAGCATCGGATTTGAGATCTGAGGTCGTGGGTTCGACCTTCCATCACGGCTATGTGATGTGTCCT--------------TGA-G--CAAGACACTTTATCCGCCAG-CTTT-ATTTACTGGTTCTACCC----AGGAAGACCTCGAGCGTAATTT--GTCAAAGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTAATAATTAAAACAATAACAACTCATTTTAATTCTAAGCGATCACCATGTTAGATTGCG---GGACAGTATTA-G--ATTGTAAGAT-A-TTAAAAACGAAATAT----AG-G-AAAAGAATAATTTTGTAAACAAGGGGTAT----AGCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----AATTACTGTACC----AC----GT-A----GC---ATA-T-TA-A--CGAG---------AT---C----ACATGT------ATCAGTGTTTGGAATCGCTTTACCTGACTC-AATGAC-AAAA--A-A-TGGTCATGGATTAAACAACCCTATGTCTGATCTCACATCCCT-----------A----------T-------TTTT------------------G-GCT----TTGTTTAAATGTATCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----ATG-----GGTGGG---G----A----TAC-TTTTTAGTGTGTG--TT-----TGGA-GGGTGGGTT-----GGTAATGCAG--ATGTGTGTGTATATgaacatatatagactattatattgtttatactaat
gi|20 : GTGTTCACCATATTTGAATGCG---GGACAGTATTGGG--TTTGTAAGGT-A-TAAAATATGAAATATATATAG-G-AAAAGAACAATTTTGTATACAAGGAGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATGCAAGGTAAACC-----CATTACTGTTCC----AC----GT-C----GC---GCA-G-AA-A--CGGG---------AT---CATATACATGC------ATCGGTGTTTGGAATCCCTTTACCTGA-CC-AATAAC-AAAAACA-A-TAATCATGGATTAAACAGCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TT
gi|21 : ATTTTGTTAACAAGGTGTTT----ATAC-AAAGCAAACACTATCTGCCAAAATACACAGTAAGCC-----CATTACTGTACCACGTAC----GT-T----GC---GCA-c
gi|21 : TAAA-AACCC-ATGATTAACCCTTTGTTCCT-----------A----------CAAAAACATTTT------------------T-GTTCGTTTTGTTTTAATGTGTCT-A-----A------TT-TT-CGTA------------------TGAAT---A----TATTTTGT---TGTTGTTTTTA-TTTTTTC-------ATG-----GGTGGGGTTG----G----TAA-TGTTCAGTTTGTG--TT-----GGGT-GGG-AGGGGGCGAAGGCAATGAtataaagcctaaaaacccatgattaaccctttgttcctacaaaaacatttttgttcgttttgttttaatgtgtctaattttcgtatgaatatattttgttgttgtttttattttttcatgggtggggttggtaatgttcagtttgtgttgggtgggagggggcgaaggcaatga
gi|23 : attttgttaacaaggtgtttatacaaagcaaacactatctgccaaaatacacagtaagcccattactgtaccacgtacgttgcgcatataaagcc----------T-------TGTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATATGAATATATTTGAATATATGAAT---A----TATT---T---TGTT--TTTTA-TTTTTTCGTG----AGT-----GGTTGG---G----G----TAA-TTTTAAGTGTATG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATAT
gi|24 : tACCATATTAGAATGCATATAAATAGCATT--------------------AAATATGATTTAT----CTTG-AAAAGAACTACTTTGTAAG----------------------GCAA-CACCACAAGCCAAATTACAAGGTAGACCAACCACATTCCT-TAT------------T-C----AT---ATA-T-AC-ATTCGGG---------ACGACC----ACATGTGACAGCATCGGTGCTTGGAACCGCTTTACATGATGC-AAT----AAAA--A-A--AATCA-AGATTAACCAACGCTATGTCTGGTCCCTatatatatagatatttttcatattaatattatgtaaaacccaccatattttttctttgaaatgaggttatatccata
gi|28 : tAAACAACCCTATGCCTGATCTTTCATCCCT-----------T----------T-------TTTT------------------T-GCT----CTATTTCAAT---------------------T-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTTGTG----AGG-----GATGGG---G----G----TAATTTTTTTGTGTGCG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATATtcta
gi|3 : TTTTAGAGTGTG--TT-----TGGA-GGGGAGGTG-----GGTGATGAGG--GTGTGTATatatatagcatatatagactatgatatttttcatactaa
gi|32 : gaaTAATT-TAATCATTCAC---AGTAGAAAGCATACAAACGACATCGCGCGTTTATTCAAC-A-GAAAATAC------T----GG-G-AAAAGAACCATTTTGTAATCAAAGACTAC----ATGC-AAAGCAA-CACTTGGAGTCATAATAGAAGGTATACagctacacagatacatgtatatagcaactatagattgtgatattcctcacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacaatgataacattacaaaaaatagattgtattgctgatgtgtggggaggcatattttaacagatcaatctatttttatttttcgctacaggccaaaatatggatttacccgtgtttatacgacacaaaaatcactgacgaaataatacattgtcaatttaaaaatatgcaagcatttgtgtaaaaatatattactatcagtatgtaaatcaatatgtttaaaagtcagattaatgtaacatagaattttcacagttactcatttccgagtattttccaacctggtgcctgcgatagatgcctgagacatgagactgacgattagcatctttaaaaattctgaattgtgacatgtgcatattttgtttcaaacaattgaatcatcatttgtatgtttcaaacatttaattccatgttctgtatttcactatacacttttaaacggaaagggcaagcacatat
gi|33 : accattaaCATGGTTGTGT--TGTGTCCC--------------TGAAG--CAAG-TGTTTTATCTGC------TT-AAT-AATGG------CT----AAAAAGATGTCCAGCATGATTTACATCA----TTTATATTAGATCTTGTGTCTCACAAT
gi|36 : tgggctattggtacaatccccaagtcAA-TGTTTAGTGT--G--TT-----TGGA-GGGAAGGTG-----GGTAATGAGG--GTGTTTGTATATAagtc
gi|38 : agaataAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGTTAAACT-----TATTACTGTACA----TC----AT-C----GC---GCattataaagcatatatagaatatgatagtcttcatattaa
gi|39 : -AATGAC-AAAA--ACA-TAGTCATGGATTAAACAACCCTTTGCCTGATCTCTTATTCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------T
gi|4 : AAC-CATTTTAATTCTAAGTGTTCGTCATATTAGAAT-CT---GGACAGTATTGTG--TTTGTAAAAT-A-TGAAATACGAAATAT----TG-G-AAAAGAACA-CTTTGTAAACAAGCAGTAC----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACT-----CATTACTGTACC----ACATTTGT-C----GT---GCA-A-TA-A--CGGG---------AT---C----GCATGT------ATTGGTA--TGGAATCCCGTTACCTGACCC-AATAGTAAAAA--A-A-TA--TATTTATTAAACATTCCTATGTCTGATCCCTTATCCCT-----------A------------------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-------A------TT-TC-TATA------------------AGA-----A----TATT---T---TG-CGTTTATA-TTTTTTCGTG----AA------GGTGGA---G----AGGACTAATTTTTTAGTGTGTG--TTTTTAGTGGG-GGG--AGTG-----GATAATGA-G--GTATGTGTGTATATa
gi|40 : ATCTGAGGTTGTGTGTTTGAAC--CCAACA-GGTCATGTGGTATGTCCTTAAATTAATATAAATAA-G--CTAGACACTTTATCCGAAAGACTTT-atcataatttatatatagactatgatattcttcatgttgatattatgtcccaccatagttttattttaatgagcctatatccatataaagcaaatacaagtataaacattacaaaaatagatatttttgctgagatttggtgaggcatattgtaacatcaattatatgaatgtttttcactacagaccaaaatataaacttaccctttttt
gi|41 : CAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TTAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|42 : agCAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TAAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|43 : agCAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAGGTGAATTAAGAA
gi|44 : agTTAAAAACACATTTGC-AAAGAAGTAAATCTGTATCTGTTTCAAGTGAATTT-----TAGAGTG
gi|45 : tcgtttcgCTAG-CTTTTGTCTACCAGTTCTATCC----AGGAAGAC-----------TTT--GTC----T----------AATT--TGTTTTACAATCAATGTAAA
gi|46 : TTGATTAAAGAAATATTAGCAAAAG---CAAGTTTGTTGCTGTT--GAGTGAACTTAGAAATAA
gi|47 : tcttGGATCTACCCTCGCAGG--GAT-T-GAGCTAGATTG--GTTAAGGTTTTA----AAAACT--TGTTT
gi|48 : tTCGTTTTGATTAATTAAATAACTATTTGC-AAAT---TAAGTTTGCAACTGTTTC
gi|49 : agctaGCGTTCACCATATTAGAATGCG---TGATATTTTTATG--TTTGTAAAAC-A-TGAAA
gi|5 : TTTTGATGTGTG--TT-----TGGA-AAAGAGTTA-----GGTAATGAGG--GTGTGTGTGTATAT
gi|50 : aCAGTCGTTTTAGTTAATTAAAGAAATATTTGC-AAAG---TAAGTTTACAGatagcatatatatactaggatattcttcatatcaatatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacacatactaacattacaaataaaatatttgctgaggtttggcacggcatattctaacctatcaatcgccttcaggccgaaatattttcacttagcaaaaataactgaggaaattatacattttaatttaaaaatacaagcatttgtgtaaaatatatgaaactattagtatgtatataaaatatatttaaaagtcagattgatttaacattgaaagttctcaggtacaaatgtccaaatatttccaaccttgtgcctgtacgtatctgagacaggagattgacgattataatattttaataaattctgaatagtggcctgtacatattttgtttcaaacaacttaaacaacattgactttttactgtttcagtcatttaattacgtgttctgtatgtctatatacacttttaaactgaaagggaaataaatatgcctag
gi|51 : agCAGTCGTTATAATCAATTAAAGAAATATTTGC-AAAG---TAAGCTTGCA
gi|53 : agCAGTCGTTTTAATTAATCAAAGAAATATTTGC-AAAG---TAAGTTTa
gi|54 : gATGTGGTGTGTTCT--------------TGA-GCACAAGACACTTTTTCCGCc
gi|6 : CAGTCGTTTTAATTAATTAAAGAAATATTTGT-AAAG---TAAGGTTGCCGCTGTTTCAAGTGAATTTAAAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTAGGTTCGA--T-CCACCACGGCTATGTGATGTGTCCT--------------TGA-G--CAAGACACCTTATCTGCCTG-CATA-ATTTACTGGTTCTACCT----AGCAAGATCTCGAGCATGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTACAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCACATTAGAATGCG---GGACAGTA-TAAG--ATTGTGAGAT-A-TGACCTACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAACCAAAATAAAATGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCT-A-AA-A--CGGGTATCCGGGTAT---C----ACATGT------ATCCGTGTTTGGAATCCCTTTACCTGACGC-ATTGAA-AAAA--A-A----TCAGGAATTAAACAACA--ATGTCTGATCTCTCATCCCT-----------A----------T-------TTT
gi|7 : agAACT-ATTTCAATTCTAAGCGTTCACCATATTA-AATGCG---GGACAGTATTGTG--TTTGTAAAAC-A-----ATACGAAATAT----AG-G-AAAAAAACAATTT---------------------------AACAA-CACTACCAG-------------TAAACC------ATTACTGTACC----AC----GTTC----GCCGAGCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTG----------CTTTACCAGACCC------C-----------T--TCATGGATTAAACAACCCTATGTCTGACCCGTTATCCTT-----------A----------T-------TTTA--------------------GTT----TTGTTTCATTGTCTCT-A-----A------TT-TC-TATA------------------TTAAT---A----TATT---TTGTTGTTGTTTTTA-TTTT------------A-----AGT-GG---G----T----T---TTTTTAATCTATA--TT-----TATG-GGG-ACGTG-----AGTAATTA----GTGTGTTTGTACAT
gi|8 : gtgCATTTTAATTCGAAGCGTTCACCATATTAGAAAATT---TGACATT-TTGTG--TTTGTAAAATCA-TGAAATACAAAATGT----GG-A-AAAAGTACAATGTTGTAAACAAGGGATAT----ATCCAAAAGTAA-CACGATCAGCCAAAAAACAAGGTAAGTC-----CATTGCTGTACC----ATGTTGGT-T----GC---ACA-T-AT-A--CAGA---------AT---C----ACATGT------ACCGGTGTTTTGAATCCCTTCACCGGACTC-ACTAAT-GAAC--G-ATTAATCATGGATTAAAGAACTCTATGCCTGATCCTTTATCCCT-----------GAATAACAGTCT-------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-A-----ATGACAGTT-TT-TATA------------------TCA-----A----TATT---T---TGTttcatatatatcatttctttatattaatattatgtcaaaactagcataaatatttttttaaatgaccctttatccatataaaacaaatgaaaacatttcaaaaatagattttttttgctgaggtttgaggagacacatt
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATTTGCTGAGGTTTGGGGAAGGGTATTTTTATATGTCCATCTATATTTATTTTTCGCTGCCTGTTTTTTTTTCAACAATGAAATTTCACTGACGAAAATATACATTGTCAAACACAGAGATTTTAAAAATTTAAGTATCAGTTTGTAAAATTGACAGACAATATCAAAGTAGATTTAGAGTCAGATTTACTTCACATAGAAATGTCTCCGGTATCAATCTCCGACTTTTTCAAACTTGTGACAGCTACATGTATTTGAGGCAGGCGATTGACAAAATAGCCTCGTCCAAAACGGTCAAACTGTCACCTACATGTTTTTTGTGTTTCCGACAACTGAATCCGGCATCATTGAATTAGTTGTCGTCTTTTTTTTTTCGATTTCAAACATTTAATTATGTAGTTATGTATACAATGTAAAATAAATAAGGAAAACAC
Unaligned ( gi|22 ): AGTATGTAAATAAAATATGTTTAAGAGTCGGATTAATTTAACATAGAAATTTCTCTGGTACTAATTTCTGCATATTTCTGACCATGTGCCTGCCACACATACCTGAGACAGGAGATTGATGATTGCTAAATTGTAGCCTGAACATATTTTGTTTCAAACAATTGAATCATTGACCTTTTTCTTTTTCAAATTCTGTGTTCTGTATTTCAGTATACATTTTTAAATGGAAAGGGAAAGCACA
Unaligned ( gi|25 ): ATATCACTAACGAAAGCATAATACACTATAACTAAGAGAGATTTTTTTTTAAAAAAATGCAAGCGTTTGCGTATAAATGTAAATAGCCGCGTGTGTGTCAGTGCGTAGAGATTACAAATCATGTTTAAGAGTCGGATTCTCTATAGATAGACATGTCTTCGCTGCTATTTTCCCAAATATTTTTAACGTGTGACTGCGACCCTAAGGATCTGCCTGGAAC
Unaligned ( gi|26 ): TTCTCAGGTATTGATTTCTGAATATTTCCGAGCTGGTGCCAGCGACATGTACCTGGGACAGGAGATTGTAGGTTAGCAGCTTTTAAAATTTCGAATTGTGGCCTATACATATTTTGTTTCCAACAACTGATTCACCCTTGACATTTTTTCTGTTTTAAACGTTTGATTCTATGTTCTGTATTAATTTTTTATATACACTAAAG
Unaligned ( gi|27 ): ACATTTTGACATACAGCAGCATAACTCCATTCTATGTTTGTCGCTACAGGGTACATGTATACGATATAAACCCTACCTATTTTTAATGAAGACAATTTCACTGATGAAACCAAACATTGCCAACTGCAGAGATGCAGAGTATTGTGCAGTATTTTTGGGGTATCAGTAAATTGTTATATTGATGAACAATAATATGTA
Unaligned ( gi|29 ): AACTATCAGTATGTAAATAAAATAGTTGATCATACTAATTGAACATAGACATTTCTTATGAACCTGAGGCAGGAGATTTATGATTAACATATTTTAAAAATATTTTTTGTTGCTAGCAACTGAATTCTCTGTTTTAAACATTTAATTCTATGTTTTATAGTTCTGTATAC
Unaligned ( gi|30 ): CATTTGTATAAATCTAAACATCAAGCAATCAACCTGTTTTCAAGTATAAGTTAAATTCACTTTACATTGAAATTTCTCTGGTACCATCTTCCAAATAACTCTAAACATATGTCTATCTAAAGTAGGAAAGATTGACGATAAACGTATTTTAGCATTTAACTC
Unaligned ( gi|31 ): ATTCAATATCATTTTAAAAAAATGACATTTTCACAACTTTAGAATATCAAAATAGGATTCACAGCCATATTTTCTTTATACAGAAATTCTCATTTCCAAACTGACGACTGCTACATGTACCCGAGTTAACCTATTGACAAACAGCCTCATGAAAC
Unaligned ( gi|34 ): ACTTGCGACTGTGAACCCATTTATAGTCTAAGTGTTCACAGCATGCATACACATTTTGTAAAAATATAAAATACCGGAGAAAAAACACTGTGTAAAGATAAGAGTCAAGGTGCAAGGTAAACCC
Unaligned ( gi|35 ): GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTGTGAAGCATATATAGACTATGCTGTATTTCATATTAA
Unaligned ( gi|37 ): AACTTATCATTAACGATGATATTCTAATATATTGTCAAATCAAGAGAAATTTTAAAAATGCATGCGTTTGTTTAAAAGAGGTAAATAACAGCATG
Unaligned ( gi|52 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTCTCATATAAAT
Alignments
lowQualScore : 333 44444444444444 11 1111 1111 11 11 1111 11 1 111 111111 111111111111111111111111111111 111111111111111111 111111111111111111
lowQualScore : 3 666 1 2 1 1 333 1 6 1 77777777777777 8 11 0 2222 1 8 44 2 6 7777 11 77 11 999 0 7777 11 1 0 0 000 4 33 2 2 8888 2 2 4444 2 2 55555 4444 8888 2 4444 333 222 2 33 999999999 444 5555 777777 2 4 55 333333 888888888888888888888888888888 555555555555555555 2 4444 99999999999999 2 2 666666666666666666 444 5555 444 444 2 9999999999999 444 777777777 5 33 55555 2 7 55555 33
lowQualScore : . ... . . . . ... . . . .............. . .. . .... . . .. . . .... .. .. .. ... . .... .. . . . ... . .. . . .... . . .... . . ..... .... .... . .... ... ... . .. ......... ... .... ...... . . .. ...... .............................. .................. . .... .............. . . .................. ... .... ... ... . ............. ... ......... . .. ..... . . ..... ..
lowQualScore : 6 444 0 5 0 0 333 0 5 4 00000000000000 0 00 8 2222 0 0 55 0 0 0000 88 44 00 666 8 0000 00 0 6 7 000 4 99 9 9 9999 9 9 5555 1 1 66666 5555 9999 1 5555 777 555 4 22 444444444 111 0000 222222 4 4 00 777777 888888888888888888888888888888 555555555555555555 1 5555 88888888888888 2 2 444444444444444444 111 0000 111 111 7 1111111111111 777 999999999 0 11 66666 2 5 66666 99
consensus : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCGA---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
Reference ( family-1622 ) : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCGAC--TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGATCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
gi|1 : -AAAA--A-A-TA---ATGGATTTAACAACACTATATCGGATCCCTTATCTCT-----------G----------T-------TTTTAAGGGGGAGGGGTGGGGGT-GGG----TTGGATTGAAGATTCT-A-----A------TT-TT-TATT------------------TGAAT---G----TATT---TCTTTGTTGTTTATA-TTTTTCCGTG----AG-GTTGGGGATGGG---GTGGGG----TAA-TTTT-AGTGTGTG--TT-----AGGA-TGGGAGGTG-----GATAATG
gi|10 : G---AGACAGTATTGTG--TTTGTAAGAT-A-TGTCATACGAAATAT----AA-G-AAAAGAACAATTTTGTAAACAAAGAGTAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGGT-AACC-----CATCACTGTACC----AT----GT-C----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------A------TTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--ACA-TAATCATGTAATAAAAATCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTC------------------T-GCT----TTGTGTTAATGTGTCT-T-----C------TT-TT-TATA------------------TGAAT---T----TATT---T---TGTTGTTTTTA--TTTTCCGTG----A--G-----GGTGGC---G----G----TAA-ATTTAAGTGTATGTTTT-----TGG--GGGAAAGTG-----GGTAATGAGG--GTGTGTATGTGTGTgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcattataatcatatatactatgatataattcatattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataattacaaataaggtttgggaaggcacattttaacatttcaatctatgtttatttttcgcttcaggccgaaacataaacatacccgttttttcgcgaaaacaaatatcactgacgaaattatacattgtcaattcaaaaatgcaaacaattgtgtaaaagataattatgtaactatcagtatataaataaaatatgtatagattgatttaatatggcaatttctcaggtatcacgttggatctggtgcctctgacatgtacatgagacaggaaattgacgattagaatcttttaaaaatgctaaattgtggcctgtgcatattttgtttgcaacaactgaatcaccattgcccctttactgtttcaaacatttaattatatgttttgtatttcagggtacacttttaaacggaaaaggaaatca
gi|11 : TTCACCATATAAGAATGCG---GGACAGTATTG-G--ATTGTAAGAT-A-TGAAATACGAAATATC---AG-G-AAAA-AACAATTTTGTAAACAAGGAGTAT----ATCC-AAAGCAA-CATTATCAGCCAAAATACAAGGTAAACA-----CATTACTGTACC----AC----GT-C----GT---ACA-A-AA-A--CGGG---------AC---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-G-TAGTCATGGATTAAACAACCCTATGTCTGATCTCGCATCCCC-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCTAA-----A------TT-TT-TATA------------------TGACT---A----TATT---T---TGTTG--TTTA-TTTTCTA--G----AG-G-----GGTGGG---G----G----TAA-TTTCCAGTGTTTG--TT-----TGGA-GGGTAGATG-----GGTAATGAgtatatagtatatatataca
gi|12 : AGCGTTCACCATATTGGAATGCG---GGACAGTTCTGTC--TTTGTAAGAT-A-TAAAATAAGAACTAT----GG-G-AAAAGAACAATTTTAGAAACAAAGGGTAT----ATCC-AAAGC---CA---------AAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GT---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATAGGTGTTTGGAATTCATTTACCTGGCAC-AAAGAT-AAAA--AGA-TAATCATGTATTAAACAACCCAATGTCTGATCCCTTATCCAT-----------A------------------TTTT------------------T-GTT----TTGCTTTAATGCGTCT-A-----A------TT-TT-GATA------------------TAAAT---ACAATTATT---T---TATTGTTTATA-TTTTTCC----------------GGTG-------------------------GTGTGTG--TG-----TGGGTGGGTGGGTG-----GG-GGTGGGG--GGGTGTATGTGTGT
gi|13 : ATTTTGTAAAGAAGAGGTATCATAATCG-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTTTGCC----AT----GT-C----AC---ACA-A-AA-A--CGGG---------AT---C----TCATGT------AAAAGTGTTTGGAATCCCTTTACCTGTCCC-AATGAC-AAAA--A-A--AGTCATAGATTAAACAACCCTATGACTGATCTCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTGATCAAA-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TG-----TAGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATACAT
gi|14 : TGTATTCAAGAGGTAT----AACC-AAAGCAA-CACTATCAGCCAAAATACAA----AACC-----CAT------ACC----AC----GT-C----GA---GCA-A-AACA--CGGG---------AT---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTAATAC-AATGAC-AAAC--A---TAGTCATGTAATAAACAATCGTATGTCTGATCTCTCGTCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAC---A----TATT---T---TGTTGTTTTAATTTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGA--TTATGTATATATATgtatatatagcatatatagactatgatattttcatattaa
gi|15 : acGCGTTCATCATATAAGAATGCG---AGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-GTAAAAAAACAAATTTGTAAACAAGGAGTAT----ATCC-AAAACAA-TACTATCAGTCAAAATACAAGGT-AACC-----CATCACT------------------------------------------GG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCCAAAGGGCAAAAA--A-A-TAACCATGTAATAAACAACTCTATGTCTG----CT--------------------------------------------------------------CT----TTGTGTCAATGTGTCT-T-----A------TT-TT-TATA------------------TTAATATAA----TATT---T---TATTGTTTTTA-TTTTTCCGTG----TG-G-----AGTGGG---G----G----TAA-TTTTTAGTCTATG--TT-----TGGC-GGGAAGGTG-----GGTAACGAatggcataatagactatgatattttcatattaat
gi|16 : tAAC-CATTTTAATTATAAGCGTTCACCATATCAGAATGCA---GGACAGTATTGTG--TTTTTAAAAA-AATAAAATACGAAAAAT----GG-G-AAAAGAATAATTTTGTAAACCAGGGATAT----ATCC-AAAGCTA-CACTATCAGCCAAAATACAAGGTAAACC-----CAAAACTGTACA----AC----GC-C----GC---GCA-A-AA-A--CGTG---------AT---C----ACATGT------AGCGGTCTTTGGTATCGCTTTACCTGAACC-ATTGGT-AAAA--A-A------ATGGATTAAACAACCCAATATCTGATTCCTTATCCCT-----------A----------G-------T---------------------------------TTTTAATGTGTCT-
gi|17 : tgtgAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGATAA-CC-----CATCACTGTATC----AC----GT-T----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTGTTTGAAATCCCTTTACCTGACCC-AATGAC--------------T--TGTATTAAACAACTCTATGTCGGATCCCTCATCCCT-----------A----------T-------TCTT------------------T-GCT----TTGTGTTTATGTGTCT-T-----A------TT-TTTTATA------------------TGAAT---A----TATT---T---CGTTGTTTTTA-TTTTTCCGTG----AA-G-----GGTGGA---G----A----TAC-TTTATAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTAT
gi|18 : TGTACC----AC----GT-TTCTTGC---GCATATAC-A--CGGG---------GT---C----TCATGC------ATCGCTGGTTTGATTCCATTTACCTGATCC-AATAAT-AAAAT-A-A-TATTTATGGA-TAA--AACCCAATGTCTGATCCTTTA-CCCTAACAAAAAAACA----------G-------TTTT------------------T-AAT------------ATGTGTCT-AGTCACA------TTCTT-TATA------------------TCAAT---A----TAAT---T---Ttt
gi|19 : TTGTAAACAAGGG-TAT----ATCC-AAAGCAA-AACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--TGGG---------AT---C----ACAaaaaccaatcctattttttttcttttaaatgtgcatatacatacattgtaacaaataatagcattacaaaaacacattttatttgcaaaggttttgaggggc
gi|19 : AAA--A-A-TGG-----GATCA--CAACCCTATGTCTGTTCTCTCATCCTT-----------A----------T-------TTTT------------------TTGCT----TTGTTTTAAT---------------------C-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTTGG---G----G----TAA-TTTCTAGTGTGTG--TT-----TGAA-GGGTAGGTT-----TGTAATGAGGTTGTGTGGGTGTATAaccctatgtctgttctctcatccttatttttttgctttgttttaatctttatatgaatatattttgttgtttttattttttcgtgaggggttggggtaatttctagtgtgtgtttgaagggtaggtttgtaatgaggttgtgtgggtgtatagaacatatatagactattatattgtttatactaat
gi|2 : ttgtaaacaagggtatatccaaagcaaaactatcagccaaaatacaaggtaaacccattactgtaccacgtcgcgcCAGTCGTTTTAATTGATTAAAGAAATATTTGC-AAAG---TAAATTTGCAGCTGTTTCAAGTGAATTTAGAAGTAAAGTGGAGCGCGTCGTCCAGTGGTACAGCATCGGATTTGAGATCTGAGGTCGTGGGTTCGACCTTCCATCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACTGGTTCTACCC----AGGAAGACCTCGAGCGTAATTT--GTCAAAGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTAATAATTAAAACAATAACAACTCATTTTAATTCTAAGCGATCACCATGTTAGATTGCG---GGACAGTATTA-G--ATTGTAAGAT-A-TTAAAAACGAAATAT----AG-G-AAAAGAATAATTTTGTAAACAAGGGGTAT----AGCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----AATTACTGTACC----AC----GT-A----GC---ATA-T-TA-A--CGAG---------AT---C----ACATGT------ATCAGTGTTTGGAATCGCTTTACCTGACTC-AATGAC-AAAA--A-A-TGGTCATGGATTAAACAACCCTATGTCTGATCTCACATCCCT-----------A----------T-------TTTT------------------G-GCT----TTGTTTAAATGTATCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AT-G-----GGTGGG---G----A----TAC-TTTTTAGTGTGTG--TT-----TGGA-GGGTGGGTT-----GGTAATGCAG--ATGTGTGTGTATATgaacatatatagactattatattgtttatactaat
gi|20 : GTGTTCACCATATTTGAATGCG---GGACAGTATTGGG--TTTGTAAGGT-A-TAAAATATGAAATATATATAG-G-AAAAGAACAATTTTGTATACAAGGAGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATGCAAGGTAAACC-----CATTACTGTTCC----AC----GT-C----GC---GCA-G-AA-A--CGGG---------AT---CATATACATGC------ATCGGTGTTTGGAATCCCTTTACCTGA-CC-AATAAC-AAAAACA-A-TAATCATGGATTAAACAGCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TT
gi|21 : ATTTTGTTAACAAGGTGTTT----ATAC-AAAGCAAACACTATCTGCCAAAATACACAGTAAGCC-----CATTACTGTACCACGTAC----GT-T----GC---GCA-c
gi|21 : TAAA-AACCC-ATGATTAACCCTTTGTTCCT-----------A----------CAAAAACATTTT------------------T-GTTCGTTTTGTTTTAATGTGTCT-A-----A------TT-TT-CGTA------------------TGAAT---A----TATTTTGT---TGTTGTTTTTA-TTTTTTCAT--------G-----GGTGGGGTTG----G----TAA-TGTTCAGTTTGTG--TT-----GGGT-GGG-AGGGGGCGAAGGCAATGAtataaagcctaaaaacccatgattaaccctttgttcctacaaaaacatttttgttcgttttgttttaatgtgtctaattttcgtatgaatatattttgttgttgtttttattttttcatgggtggggttggtaatgttcagtttgtgttgggtgggagggggcgaaggcaatga
gi|23 : attttgttaacaaggtgtttatacaaagcaaacactatctgccaaaatacacagtaagcccattactgtaccacgtacgttgcgcatataaagcc----------T-------TGTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATATGAATATATTTGAATATATGAAT---A----TATT---T---TGTT--TTTTA-TTTTTTCGTG----AG-T-----GGTTGG---G----G----TAA-TTTTAAGTGTATG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATAT
gi|24 : tACCATATTAGAATGCATATAAATAGCATT--------------------AAATATGATTTAT----CTTG-AAAAGAACTACTTTGTAAG----------------------GCAA-CACCACAAGCCAAATTACAAGGTAGACCAACCACATTCCT-TAT------------T-C----AT---ATA-T-AC-ATTCGGG---------ACGACC----ACATGTGACAGCATCGGTGCTTGGAACCGCTTTACATGATGC-AAT----AAAA--A-A--AATCA-AGATTAACCAACGCTATGTCTGGTCCCTatatatatagatatttttcatattaatattatgtaaaacccaccatattttttctttgaaatgaggttatatccata
gi|28 : tAAACAACCCTATGCCTGATCTTTCATCCCT-----------T----------T-------TTTT------------------T-GCT----CTATTTCAAT---------------------T-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTTGTG----AG-G-----GATGGG---G----G----TAATTTTTTTGTGTGCG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATATtcta
gi|3 : TTTTAGAGTGTG--TT-----TGGA-GGGGAGGTG-----GGTGATGAGG--GTGTGTATatatatagcatatatagactatgatatttttcatactaa
gi|32 : gaaTAATT-TAATCATTCAC---AGTAGAAAGCATACAAACGACATCGCGCGTTTATTCAAC-A-GAAAATAC------T----GG-G-AAAAGAACCATTTTGTAATCAAAGACTAC----ATGC-AAAGCAA-CACTTGGAGTCATAATAGAAGGTATACagctacacagatacatgtatatagcaactatagattgtgatattcctcacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacaatgataacattacaaaaaatagattgtattgctgatgtgtggggaggcatattttaacagatcaatctatttttatttttcgctacaggccaaaatatggatttacccgtgtttatacgacacaaaaatcactgacgaaataatacattgtcaatttaaaaatatgcaagcatttgtgtaaaaatatattactatcagtatgtaaatcaatatgtttaaaagtcagattaatgtaacatagaattttcacagttactcatttccgagtattttccaacctggtgcctgcgatagatgcctgagacatgagactgacgattagcatctttaaaaattctgaattgtgacatgtgcatattttgtttcaaacaattgaatcatcatttgtatgtttcaaacatttaattccatgttctgtatttcactatacacttttaaacggaaagggcaagcacatat
gi|33 : accattaaCATGGTTGTGT--TGTGTCCC--------------TGAAG--CAAG-TGTTTTATCTGC------TT-A-ATAATGG------CT----AAAAAGATGTCCAGCATGATTTACATCA----TTTATATTAGATCTTGTGTCTCACAAT
gi|36 : tgggctattggtacaatccccaagtcAA-TGTTTAGTGT--G--TT-----TGGA-GGGAAGGTG-----GGTAATGAGG--GTGTTTGTATATAagtc
gi|38 : agaataAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGTTAAACT-----TATTACTGTACA----TC----AT-C----GC---GCattataaagcatatatagaatatgatagtcttcatattaa
gi|39 : -AATGAC-AAAA--ACA-TAGTCATGGATTAAACAACCCTTTGCCTGATCTCTTATTCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------T
gi|4 : AAC-CATTTTAATTCTAAGTGTTCGTCATATTAGAAT-CT---GGACAGTATTGTG--TTTGTAAAAT-A-TGAAATACGAAATAT----TG-G-AAAAGAACA-CTTTGTAAACAAGCAGTAC----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACT-----CATTACTGTACC----ACATTTGT-C----GT---GCA-A-TA-A--CGGG---------AT---C----GCATGT------ATTGGTA--TGGAATCCCGTTACCTGACCC-AATAGTAAAAA--A-A-TA--TATTTATTAAACATTCCTATGTCTGATCCCTTATCCCT-----------A------------------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-------A------TT-TC-TATA------------------AGA-----A----TATT---T---TG-CGTTTATA-TTTTTTCGTG----A--A-----GGTGGA---G----AGGACTAATTTTTTAGTGTGTG--TTTTTAGTGGG-GGG--AGTG-----GATAATGA-G--GTATGTGTGTATATa
gi|40 : ATCTGAGGTTGTGTGTTTGAA--CCCAACA-GGTCATGTGGTATGTCCTTAAATTAATATAAATA-AG--CTAGACACTTTATCCGAAAGACTTT-atcataatttatatatagactatgatattcttcatgttgatattatgtcccaccatagttttattttaatgagcctatatccatataaagcaaatacaagtataaacattacaaaaatagatatttttgctgagatttggtgaggcatattgtaacatcaattatatgaatgtttttcactacagaccaaaatataaacttaccctttttt
gi|41 : CAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TTAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|42 : agCAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TAAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|43 : agCAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAGGTGAATTAAGAA
gi|44 : agTTAAAAACACATTTGC-AAAGAAGTAAATCTGTATCTGTTTCAAGTGAATTT-----TAGAGTG
gi|45 : tcgtttcgCTAG-CTTTTGTCTACCAGTTCTATCC----AGGAAGAC-----------TTT--GTC----T----------AATT--TGTTTTACAATCAATGTAAA
gi|46 : TTGATTAAAGAAATATTAGCAAAAG---CAAGTTTGTTGCTGTT--GAGTGAACTTAGAAATAA
gi|47 : tcttGGATCTACCCTCGCAGGGA----TTGAGCTAGATTG--GTTAAGGTTTTA----AAAACT--TGTTT
gi|48 : tTCGTTTTGATTAATTAAATAACTATTTGC-AAAT---TAAGTTTGCAACTGTTTC
gi|49 : agctaGCGTTCACCATATTAGAATGCG---TGATATTTTTATG--TTTGTAAAAC-A-TGAAA
gi|5 : TTTTGATGTGTG--TT-----TGGA-AAAGAGTTA-----GGTAATGAGG--GTGTGTGTGTATAT
gi|50 : aCAGTCGTTTTAGTTAATTAAAGAAATATTTGC-AAAG---TAAGTTTACAGatagcatatatatactaggatattcttcatatcaatatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacacatactaacattacaaataaaatatttgctgaggtttggcacggcatattctaacctatcaatcgccttcaggccgaaatattttcacttagcaaaaataactgaggaaattatacattttaatttaaaaatacaagcatttgtgtaaaatatatgaaactattagtatgtatataaaatatatttaaaagtcagattgatttaacattgaaagttctcaggtacaaatgtccaaatatttccaaccttgtgcctgtacgtatctgagacaggagattgacgattataatattttaataaattctgaatagtggcctgtacatattttgtttcaaacaacttaaacaacattgactttttactgtttcagtcatttaattacgtgttctgtatgtctatatacacttttaaactgaaagggaaataaatatgcctag
gi|51 : agCAGTCGTTATAATCAATTAAAGAAATATTTGC-AAAG---TAAGCTTGCA
gi|53 : agCAGTCGTTTTAATTAATCAAAGAAATATTTGC-AAAG---TAAGTTTa
gi|54 : gATGTGGTGTGTTCT--------------TG-AGCACAAGACACTTTTTCCGCc
gi|6 : CAGTCGTTTTAATTAATTAAAGAAATATTTGT-AAAG---TAAGGTTGCCGCTGTTTCAAGTGAATTTAAAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTAGGTTCGA---TCCACCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACCTTATCTGCCTG-CATA-ATTTACTGGTTCTACCT----AGCAAGATCTCGAGCATGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTACAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCACATTAGAATGCG---GGACAGTA-TAAG--ATTGTGAGAT-A-TGACCTACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAACCAAAATAAAATGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCT-A-AA-A--CGGGTATCCGGGTAT---C----ACATGT------ATCCGTGTTTGGAATCCCTTTACCTGACGC-ATTGAA-AAAA--A-A----TCAGGAATTAAACAACA--ATGTCTGATCTCTCATCCCT-----------A----------T-------TTT
gi|7 : agAACT-ATTTCAATTCTAAGCGTTCACCATATTA-AATGCG---GGACAGTATTGTG--TTTGTAAAAC-A-----ATACGAAATAT----AG-G-AAAAAAACAATTT---------------------------AACAA-CACTACCAG-------------TAAACC------ATTACTGTACC----AC----GTTC----GCCGAGCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTG----------CTTTACCAGACCC------C-----------T--TCATGGATTAAACAACCCTATGTCTGACCCGTTATCCTT-----------A----------T-------TTTA--------------------GTT----TTGTTTCATTGTCTCT-A-----A------TT-TC-TATA------------------TTAAT---A----TATT---T---TGTTGTTGTTT-TTATTT--TA----AGTG-----GGT----------------T---TTTTTAATCTATA--TT-----TATG-GGG-ACGTG-----AGTAATTA----GTGTGTTTGTACAT
gi|8 : gtgCATTTTAATTCGAAGCGTTCACCATATTAGAAAATT---TGACATT-TTGTG--TTTGTAAAATCA-TGAAATACAAAATGT----GG-A-AAAAGTACAATGTTGTAAACAAGGGATAT----ATCCAAAAGTAA-CACGATCAGCCAAAAAACAAGGTAAGTC-----CATTGCTGTACC----ATGTTGGT-T----GC---ACA-T-AT-A--CAGA---------AT---C----ACATGT------ACCGGTGTTTTGAATCCCTTCACCGGACTC-ACTAAT-GAAC--G-ATTAATCATGGATTAAAGAACTCTATGCCTGATCCTTTATCCCT-----------GAATAACAGTCT-------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-A-----ATGACAGTT-TT-TATA------------------TCA-----A----TATT---T---TGTttcatatatatcatttctttatattaatattatgtcaaaactagcataaatatttttttaaatgaccctttatccatataaaacaaatgaaaacatttcaaaaatagattttttttgctgaggtttgaggagacacatt
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATTTGCTGAGGTTTGGGGAAGGGTATTTTTATATGTCCATCTATATTTATTTTTCGCTGCCTGTTTTTTTTTCAACAATGAAATTTCACTGACGAAAATATACATTGTCAAACACAGAGATTTTAAAAATTTAAGTATCAGTTTGTAAAATTGACAGACAATATCAAAGTAGATTTAGAGTCAGATTTACTTCACATAGAAATGTCTCCGGTATCAATCTCCGACTTTTTCAAACTTGTGACAGCTACATGTATTTGAGGCAGGCGATTGACAAAATAGCCTCGTCCAAAACGGTCAAACTGTCACCTACATGTTTTTTGTGTTTCCGACAACTGAATCCGGCATCATTGAATTAGTTGTCGTCTTTTTTTTTTCGATTTCAAACATTTAATTATGTAGTTATGTATACAATGTAAAATAAATAAGGAAAACAC
Unaligned ( gi|22 ): AGTATGTAAATAAAATATGTTTAAGAGTCGGATTAATTTAACATAGAAATTTCTCTGGTACTAATTTCTGCATATTTCTGACCATGTGCCTGCCACACATACCTGAGACAGGAGATTGATGATTGCTAAATTGTAGCCTGAACATATTTTGTTTCAAACAATTGAATCATTGACCTTTTTCTTTTTCAAATTCTGTGTTCTGTATTTCAGTATACATTTTTAAATGGAAAGGGAAAGCACA
Unaligned ( gi|25 ): ATATCACTAACGAAAGCATAATACACTATAACTAAGAGAGATTTTTTTTTAAAAAAATGCAAGCGTTTGCGTATAAATGTAAATAGCCGCGTGTGTGTCAGTGCGTAGAGATTACAAATCATGTTTAAGAGTCGGATTCTCTATAGATAGACATGTCTTCGCTGCTATTTTCCCAAATATTTTTAACGTGTGACTGCGACCCTAAGGATCTGCCTGGAAC
Unaligned ( gi|26 ): TTCTCAGGTATTGATTTCTGAATATTTCCGAGCTGGTGCCAGCGACATGTACCTGGGACAGGAGATTGTAGGTTAGCAGCTTTTAAAATTTCGAATTGTGGCCTATACATATTTTGTTTCCAACAACTGATTCACCCTTGACATTTTTTCTGTTTTAAACGTTTGATTCTATGTTCTGTATTAATTTTTTATATACACTAAAG
Unaligned ( gi|27 ): ACATTTTGACATACAGCAGCATAACTCCATTCTATGTTTGTCGCTACAGGGTACATGTATACGATATAAACCCTACCTATTTTTAATGAAGACAATTTCACTGATGAAACCAAACATTGCCAACTGCAGAGATGCAGAGTATTGTGCAGTATTTTTGGGGTATCAGTAAATTGTTATATTGATGAACAATAATATGTA
Unaligned ( gi|29 ): AACTATCAGTATGTAAATAAAATAGTTGATCATACTAATTGAACATAGACATTTCTTATGAACCTGAGGCAGGAGATTTATGATTAACATATTTTAAAAATATTTTTTGTTGCTAGCAACTGAATTCTCTGTTTTAAACATTTAATTCTATGTTTTATAGTTCTGTATAC
Unaligned ( gi|30 ): CATTTGTATAAATCTAAACATCAAGCAATCAACCTGTTTTCAAGTATAAGTTAAATTCACTTTACATTGAAATTTCTCTGGTACCATCTTCCAAATAACTCTAAACATATGTCTATCTAAAGTAGGAAAGATTGACGATAAACGTATTTTAGCATTTAACTC
Unaligned ( gi|31 ): ATTCAATATCATTTTAAAAAAATGACATTTTCACAACTTTAGAATATCAAAATAGGATTCACAGCCATATTTTCTTTATACAGAAATTCTCATTTCCAAACTGACGACTGCTACATGTACCCGAGTTAACCTATTGACAAACAGCCTCATGAAAC
Unaligned ( gi|34 ): ACTTGCGACTGTGAACCCATTTATAGTCTAAGTGTTCACAGCATGCATACACATTTTGTAAAAATATAAAATACCGGAGAAAAAACACTGTGTAAAGATAAGAGTCAAGGTGCAAGGTAAACCC
Unaligned ( gi|35 ): GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTGTGAAGCATATATAGACTATGCTGTATTTCATATTAA
Unaligned ( gi|37 ): AACTTATCATTAACGATGATATTCTAATATATTGTCAAATCAAGAGAAATTTTAAAAATGCATGCGTTTGTTTAAAAGAGGTAAATAACAGCATG
Unaligned ( gi|52 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTCTCATATAAAT
Alignments
lowQualScore : 22222 44444444444444 11 1111 1111 11 11 1111 11 1 111 111111 111111111111111111111111111111 111111111111111111 111111111111111111
lowQualScore : 3 666 1 2 1 1 77777 1 6 1 77777777777777 8 11 0 2222 1 8 44 2 6 7777 11 77 11 999 0 7777 11 1 0 0 000 4 33 2 2 8888 2 2 4444 2 2 55555 4444 8888 2 4444 333 222 2 33 999999999 444 5555 777777 2 4 55 333333 888888888888888888888888888888 555555555555555555 2 4444 99999999999999 2 2 666666666666666666 444 5555 444 444 2 9999999999999 444 777777777 5 33 55555 2 7 55555 33
lowQualScore : . ... . . . . ..... . . . .............. . .. . .... . . .. . . .... .. .. .. ... . .... .. . . . ... . .. . . .... . . .... . . ..... .... .... . .... ... ... . .. ......... ... .... ...... . . .. ...... .............................. .................. . .... .............. . . .................. ... .... ... ... . ............. ... ......... . .. ..... . . ..... ..
lowQualScore : 6 444 0 5 0 0 77777 0 5 4 00000000000000 0 00 8 2222 0 0 55 0 0 0000 44 44 00 666 8 0000 00 0 6 7 000 4 99 9 9 9999 9 9 5555 1 1 66666 5555 9999 1 5555 777 555 4 22 444444444 111 0000 222222 4 4 00 777777 888888888888888888888888888888 555555555555555555 1 5555 88888888888888 2 2 444444444444444444 111 0000 111 111 7 1111111111111 777 999999999 0 11 66666 2 5 66666 99
consensus : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
Reference ( family-1622 ) : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
gi|1 : -AAAA--A-A-TA---ATGGATTTAACAACACTATATCGGATCCCTTATCTCT-----------G----------T-------TTTTAAGGGGGAGGGGTGGGGGT-GGG----TTGGATTGAAGATTCT-A-----A------TT-TT-TATT------------------TGAAT---G----TATT---TCTTTGTTGTTTATA-TTTTTCCGTG----AG-GTTGGGGATGGG---GTGGGG----TAA-TTTT-AGTGTGTG--TT-----AGGA-TGGGAGGTG-----GATAATG
gi|10 : G---AGACAGTATTGTG--TTTGTAAGAT-A-TGTCATACGAAATAT----AA-G-AAAAGAACAATTTTGTAAACAAAGAGTAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGGT-AACC-----CATCACTGTACC----AT----GT-C----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------A------TTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--ACA-TAATCATGTAATAAAAATCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTC------------------T-GCT----TTGTGTTAATGTGTCT-T-----C------TT-TT-TATA------------------TGAAT---T----TATT---T---TGTTGTTTTTA--TTTTCCGTG----A--G-----GGTGGC---G----G----TAA-ATTTAAGTGTATGTTTT-----TGG--GGGAAAGTG-----GGTAATGAGG--GTGTGTATGTGTGTgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcattataatcatatatactatgatataattcatattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataattacaaataaggtttgggaaggcacattttaacatttcaatctatgtttatttttcgcttcaggccgaaacataaacatacccgttttttcgcgaaaacaaatatcactgacgaaattatacattgtcaattcaaaaatgcaaacaattgtgtaaaagataattatgtaactatcagtatataaataaaatatgtatagattgatttaatatggcaatttctcaggtatcacgttggatctggtgcctctgacatgtacatgagacaggaaattgacgattagaatcttttaaaaatgctaaattgtggcctgtgcatattttgtttgcaacaactgaatcaccattgcccctttactgtttcaaacatttaattatatgttttgtatttcagggtacacttttaaacggaaaaggaaatca
gi|11 : TTCACCATATAAGAATGCG---GGACAGTATTG-G--ATTGTAAGAT-A-TGAAATACGAAATATC---AG-G-AAAA-AACAATTTTGTAAACAAGGAGTAT----ATCC-AAAGCAA-CATTATCAGCCAAAATACAAGGTAAACA-----CATTACTGTACC----AC----GT-C----GT---ACA-A-AA-A--CGGG---------AC---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-G-TAGTCATGGATTAAACAACCCTATGTCTGATCTCGCATCCCC-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCTAA-----A------TT-TT-TATA------------------TGACT---A----TATT---T---TGTTG--TTTA-TTTTCTA--G----AG-G-----GGTGGG---G----G----TAA-TTTCCAGTGTTTG--TT-----TGGA-GGGTAGATG-----GGTAATGAgtatatagtatatatataca
gi|12 : AGCGTTCACCATATTGGAATGCG---GGACAGTTCTGTC--TTTGTAAGAT-A-TAAAATAAGAACTAT----GG-G-AAAAGAACAATTTTAGAAACAAAGGGTAT----ATCC-AAAGC---CA---------AAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GT---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATAGGTGTTTGGAATTCATTTACCTGGCAC-AAAGAT-AAAA--AGA-TAATCATGTATTAAACAACCCAATGTCTGATCCCTTATCCAT-----------A------------------TTTT------------------T-GTT----TTGCTTTAATGCGTCT-A-----A------TT-TT-GATA------------------TAAAT---ACAATTATT---T---TATTGTTTATA-TTTTTCC----------------GGTG-------------------------GTGTGTG--TG-----TGGGTGGGTGGGTG-----GG-GGTGGGG--GGGTGTATGTGTGT
gi|13 : ATTTTGTAAAGAAGAGGTATCATAATCG-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTTTGCC----AT----GT-C----AC---ACA-A-AA-A--CGGG---------AT---C----TCATGT------AAAAGTGTTTGGAATCCCTTTACCTGTCCC-AATGAC-AAAA--A-A--AGTCATAGATTAAACAACCCTATGACTGATCTCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTGATCAAA-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TG-----TAGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATACAT
gi|14 : TGTATTCAAGAGGTAT----AACC-AAAGCAA-CACTATCAGCCAAAATACAA----AACC-----CAT------ACC----AC----GT-C----GA---GCA-A-AACA--CGGG---------AT---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTAATAC-AATGAC-AAAC--A---TAGTCATGTAATAAACAATCGTATGTCTGATCTCTCGTCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAC---A----TATT---T---TGTTGTTTTAATTTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGA--TTATGTATATATATgtatatatagcatatatagactatgatattttcatattaa
gi|15 : acGCGTTCATCATATAAGAATGCG---AGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-GTAAAAAAACAAATTTGTAAACAAGGAGTAT----ATCC-AAAACAA-TACTATCAGTCAAAATACAAGGT-AACC-----CATCACT------------------------------------------GG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCCAAAGGGCAAAAA--A-A-TAACCATGTAATAAACAACTCTATGTCTG----CT--------------------------------------------------------------CT----TTGTGTCAATGTGTCT-T-----A------TT-TT-TATA------------------TTAATATAA----TATT---T---TATTGTTTTTA-TTTTTCCGTG----TG-G-----AGTGGG---G----G----TAA-TTTTTAGTCTATG--TT-----TGGC-GGGAAGGTG-----GGTAACGAatggcataatagactatgatattttcatattaat
gi|16 : tAAC-CATTTTAATTATAAGCGTTCACCATATCAGAATGCA---GGACAGTATTGTG--TTTTTAAAAA-AATAAAATACGAAAAAT----GG-G-AAAAGAATAATTTTGTAAACCAGGGATAT----ATCC-AAAGCTA-CACTATCAGCCAAAATACAAGGTAAACC-----CAAAACTGTACA----AC----GC-C----GC---GCA-A-AA-A--CGTG---------AT---C----ACATGT------AGCGGTCTTTGGTATCGCTTTACCTGAACC-ATTGGT-AAAA--A-A------ATGGATTAAACAACCCAATATCTGATTCCTTATCCCT-----------A----------G-------T---------------------------------TTTTAATGTGTCT-
gi|17 : tgtgAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGATAA-CC-----CATCACTGTATC----AC----GT-T----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTGTTTGAAATCCCTTTACCTGACCC-AATGAC--------------T--TGTATTAAACAACTCTATGTCGGATCCCTCATCCCT-----------A----------T-------TCTT------------------T-GCT----TTGTGTTTATGTGTCT-T-----A------TT-TTTTATA------------------TGAAT---A----TATT---T---CGTTGTTTTTA-TTTTTCCGTG----AA-G-----GGTGGA---G----A----TAC-TTTATAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTAT
gi|18 : TGTACC----AC----GT-TTCTTGC---GCATATAC-A--CGGG---------GT---C----TCATGC------ATCGCTGGTTTGATTCCATTTACCTGATCC-AATAAT-AAAAT-A-A-TATTTATGGA-TAA--AACCCAATGTCTGATCCTTTA-CCCTAACAAAAAAACA----------G-------TTTT------------------T-AAT------------ATGTGTCT-AGTCACA------TTCTT-TATA------------------TCAAT---A----TAAT---T---Ttt
gi|19 : TTGTAAACAAGGG-TAT----ATCC-AAAGCAA-AACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--TGGG---------AT---C----ACAaaaaccaatcctattttttttcttttaaatgtgcatatacatacattgtaacaaataatagcattacaaaaacacattttatttgcaaaggttttgaggggc
gi|19 : AAA--A-A-TGG-----GATCA--CAACCCTATGTCTGTTCTCTCATCCTT-----------A----------T-------TTTT------------------TTGCT----TTGTTTTAAT---------------------C-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTTGG---G----G----TAA-TTTCTAGTGTGTG--TT-----TGAA-GGGTAGGTT-----TGTAATGAGGTTGTGTGGGTGTATAaccctatgtctgttctctcatccttatttttttgctttgttttaatctttatatgaatatattttgttgtttttattttttcgtgaggggttggggtaatttctagtgtgtgtttgaagggtaggtttgtaatgaggttgtgtgggtgtatagaacatatatagactattatattgtttatactaat
gi|2 : ttgtaaacaagggtatatccaaagcaaaactatcagccaaaatacaaggtaaacccattactgtaccacgtcgcgcCAGTCGTTTTAATTGATTAAAGAAATATTTGC-AAAG---TAAATTTGCAGCTGTTTCAAGTGAATTTAGAAGTAAAGTGGAGCGCGTCGTCCAGTGGTACAGCATCGGATTTGAGATCTGAGGTCGTGGGTTCG-ACCTTCCATCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACTGGTTCTACCC----AGGAAGACCTCGAGCGTAATTT--GTCAAAGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTAATAATTAAAACAATAACAACTCATTTTAATTCTAAGCGATCACCATGTTAGATTGCG---GGACAGTATTA-G--ATTGTAAGAT-A-TTAAAAACGAAATAT----AG-G-AAAAGAATAATTTTGTAAACAAGGGGTAT----AGCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----AATTACTGTACC----AC----GT-A----GC---ATA-T-TA-A--CGAG---------AT---C----ACATGT------ATCAGTGTTTGGAATCGCTTTACCTGACTC-AATGAC-AAAA--A-A-TGGTCATGGATTAAACAACCCTATGTCTGATCTCACATCCCT-----------A----------T-------TTTT------------------G-GCT----TTGTTTAAATGTATCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AT-G-----GGTGGG---G----A----TAC-TTTTTAGTGTGTG--TT-----TGGA-GGGTGGGTT-----GGTAATGCAG--ATGTGTGTGTATATgaacatatatagactattatattgtttatactaat
gi|20 : GTGTTCACCATATTTGAATGCG---GGACAGTATTGGG--TTTGTAAGGT-A-TAAAATATGAAATATATATAG-G-AAAAGAACAATTTTGTATACAAGGAGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATGCAAGGTAAACC-----CATTACTGTTCC----AC----GT-C----GC---GCA-G-AA-A--CGGG---------AT---CATATACATGC------ATCGGTGTTTGGAATCCCTTTACCTGA-CC-AATAAC-AAAAACA-A-TAATCATGGATTAAACAGCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TT
gi|21 : ATTTTGTTAACAAGGTGTTT----ATAC-AAAGCAAACACTATCTGCCAAAATACACAGTAAGCC-----CATTACTGTACCACGTAC----GT-T----GC---GCA-c
gi|21 : TAAA-AACCC-ATGATTAACCCTTTGTTCCT-----------A----------CAAAAACATTTT------------------T-GTTCGTTTTGTTTTAATGTGTCT-A-----A------TT-TT-CGTA------------------TGAAT---A----TATTTTGT---TGTTGTTTTTA-TTTTTTCAT--------G-----GGTGGGGTTG----G----TAA-TGTTCAGTTTGTG--TT-----GGGT-GGG-AGGGGGCGAAGGCAATGAtataaagcctaaaaacccatgattaaccctttgttcctacaaaaacatttttgttcgttttgttttaatgtgtctaattttcgtatgaatatattttgttgttgtttttattttttcatgggtggggttggtaatgttcagtttgtgttgggtgggagggggcgaaggcaatga
gi|23 : attttgttaacaaggtgtttatacaaagcaaacactatctgccaaaatacacagtaagcccattactgtaccacgtacgttgcgcatataaagcc----------T-------TGTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATATGAATATATTTGAATATATGAAT---A----TATT---T---TGTT--TTTTA-TTTTTTCGTG----AG-T-----GGTTGG---G----G----TAA-TTTTAAGTGTATG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATAT
gi|24 : tACCATATTAGAATGCATATAAATAGCATT--------------------AAATATGATTTAT----CTTG-AAAAGAACTACTTTGTAAG----------------------GCAA-CACCACAAGCCAAATTACAAGGTAGACCAACCACATTCCT-TAT------------T-C----AT---ATA-T-AC-ATTCGGG---------ACGACC----ACATGTGACAGCATCGGTGCTTGGAACCGCTTTACATGATGC-AAT----AAAA--A-A--AATCA-AGATTAACCAACGCTATGTCTGGTCCCTatatatatagatatttttcatattaatattatgtaaaacccaccatattttttctttgaaatgaggttatatccata
gi|28 : tAAACAACCCTATGCCTGATCTTTCATCCCT-----------T----------T-------TTTT------------------T-GCT----CTATTTCAAT---------------------T-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTTGTG----AG-G-----GATGGG---G----G----TAATTTTTTTGTGTGCG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATATtcta
gi|3 : TTTTAGAGTGTG--TT-----TGGA-GGGGAGGTG-----GGTGATGAGG--GTGTGTATatatatagcatatatagactatgatatttttcatactaa
gi|32 : gaaTAATT-TAATCATTCAC---AGTAGAAAGCATACAAACGACATCGCGCGTTTATTCAAC-A-GAAAATAC------T----GG-G-AAAAGAACCATTTTGTAATCAAAGACTAC----ATGC-AAAGCAA-CACTTGGAGTCATAATAGAAGGTATACagctacacagatacatgtatatagcaactatagattgtgatattcctcacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacaatgataacattacaaaaaatagattgtattgctgatgtgtggggaggcatattttaacagatcaatctatttttatttttcgctacaggccaaaatatggatttacccgtgtttatacgacacaaaaatcactgacgaaataatacattgtcaatttaaaaatatgcaagcatttgtgtaaaaatatattactatcagtatgtaaatcaatatgtttaaaagtcagattaatgtaacatagaattttcacagttactcatttccgagtattttccaacctggtgcctgcgatagatgcctgagacatgagactgacgattagcatctttaaaaattctgaattgtgacatgtgcatattttgtttcaaacaattgaatcatcatttgtatgtttcaaacatttaattccatgttctgtatttcactatacacttttaaacggaaagggcaagcacatat
gi|33 : accattaaCATGGTTGTGT--TGTGTCCC--------------TGAAG--CAAG-TGTTTTATCTGC------TT-A-ATAATGG------CT----AAAAAGATGTCCAGCATGATTTACATCA----TTTATATTAGATCTTGTGTCTCACAAT
gi|36 : tgggctattggtacaatccccaagtcAA-TGTTTAGTGT--G--TT-----TGGA-GGGAAGGTG-----GGTAATGAGG--GTGTTTGTATATAagtc
gi|38 : agaataAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGTTAAACT-----TATTACTGTACA----TC----AT-C----GC---GCattataaagcatatatagaatatgatagtcttcatattaa
gi|39 : -AATGAC-AAAA--ACA-TAGTCATGGATTAAACAACCCTTTGCCTGATCTCTTATTCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------T
gi|4 : AAC-CATTTTAATTCTAAGTGTTCGTCATATTAGAAT-CT---GGACAGTATTGTG--TTTGTAAAAT-A-TGAAATACGAAATAT----TG-G-AAAAGAACA-CTTTGTAAACAAGCAGTAC----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACT-----CATTACTGTACC----ACATTTGT-C----GT---GCA-A-TA-A--CGGG---------AT---C----GCATGT------ATTGGTA--TGGAATCCCGTTACCTGACCC-AATAGTAAAAA--A-A-TA--TATTTATTAAACATTCCTATGTCTGATCCCTTATCCCT-----------A------------------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-------A------TT-TC-TATA------------------AGA-----A----TATT---T---TG-CGTTTATA-TTTTTTCGTG----A--A-----GGTGGA---G----AGGACTAATTTTTTAGTGTGTG--TTTTTAGTGGG-GGG--AGTG-----GATAATGA-G--GTATGTGTGTATATa
gi|40 : ATCTGAGGTTGTGTGTTTGAA---CCCAACA-GGTCATGTGGTATGTCCTTAAATTAATATAAATA-AG--CTAGACACTTTATCCGAAAGACTTT-atcataatttatatatagactatgatattcttcatgttgatattatgtcccaccatagttttattttaatgagcctatatccatataaagcaaatacaagtataaacattacaaaaatagatatttttgctgagatttggtgaggcatattgtaacatcaattatatgaatgtttttcactacagaccaaaatataaacttaccctttttt
gi|41 : CAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TTAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|42 : agCAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TAAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|43 : agCAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAGGTGAATTAAGAA
gi|44 : agTTAAAAACACATTTGC-AAAGAAGTAAATCTGTATCTGTTTCAAGTGAATTT-----TAGAGTG
gi|45 : tcgtttcgCTAG-CTTTTGTCTACCAGTTCTATCC----AGGAAGAC-----------TTT--GTC----T----------AATT--TGTTTTACAATCAATGTAAA
gi|46 : TTGATTAAAGAAATATTAGCAAAAG---CAAGTTTGTTGCTGTT--GAGTGAACTTAGAAATAA
gi|47 : tcttGGATCTACCCTCGCAGGGA----TTGAGCTAGATTG--GTTAAGGTTTTA----AAAACT--TGTTT
gi|48 : tTCGTTTTGATTAATTAAATAACTATTTGC-AAAT---TAAGTTTGCAACTGTTTC
gi|49 : agctaGCGTTCACCATATTAGAATGCG---TGATATTTTTATG--TTTGTAAAAC-A-TGAAA
gi|5 : TTTTGATGTGTG--TT-----TGGA-AAAGAGTTA-----GGTAATGAGG--GTGTGTGTGTATAT
gi|50 : aCAGTCGTTTTAGTTAATTAAAGAAATATTTGC-AAAG---TAAGTTTACAGatagcatatatatactaggatattcttcatatcaatatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacacatactaacattacaaataaaatatttgctgaggtttggcacggcatattctaacctatcaatcgccttcaggccgaaatattttcacttagcaaaaataactgaggaaattatacattttaatttaaaaatacaagcatttgtgtaaaatatatgaaactattagtatgtatataaaatatatttaaaagtcagattgatttaacattgaaagttctcaggtacaaatgtccaaatatttccaaccttgtgcctgtacgtatctgagacaggagattgacgattataatattttaataaattctgaatagtggcctgtacatattttgtttcaaacaacttaaacaacattgactttttactgtttcagtcatttaattacgtgttctgtatgtctatatacacttttaaactgaaagggaaataaatatgcctag
gi|51 : agCAGTCGTTATAATCAATTAAAGAAATATTTGC-AAAG---TAAGCTTGCA
gi|53 : agCAGTCGTTTTAATTAATCAAAGAAATATTTGC-AAAG---TAAGTTTa
gi|54 : gATGTGGTGTGTTCT--------------TG-AGCACAAGACACTTTTTCCGCc
gi|6 : CAGTCGTTTTAATTAATTAAAGAAATATTTGT-AAAG---TAAGGTTGCCGCTGTTTCAAGTGAATTTAAAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTAGGTTCG-A---TCCACCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACCTTATCTGCCTG-CATA-ATTTACTGGTTCTACCT----AGCAAGATCTCGAGCATGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTACAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCACATTAGAATGCG---GGACAGTA-TAAG--ATTGTGAGAT-A-TGACCTACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAACCAAAATAAAATGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCT-A-AA-A--CGGGTATCCGGGTAT---C----ACATGT------ATCCGTGTTTGGAATCCCTTTACCTGACGC-ATTGAA-AAAA--A-A----TCAGGAATTAAACAACA--ATGTCTGATCTCTCATCCCT-----------A----------T-------TTT
gi|7 : agAACT-ATTTCAATTCTAAGCGTTCACCATATTA-AATGCG---GGACAGTATTGTG--TTTGTAAAAC-A-----ATACGAAATAT----AG-G-AAAAAAACAATTT---------------------------AACAA-CACTACCAG-------------TAAACC------ATTACTGTACC----AC----GTTC----GCCGAGCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTG----------CTTTACCAGACCC------C-----------T--TCATGGATTAAACAACCCTATGTCTGACCCGTTATCCTT-----------A----------T-------TTTA--------------------GTT----TTGTTTCATTGTCTCT-A-----A------TT-TC-TATA------------------TTAAT---A----TATT---T---TGTTGTTGTTT-TTATTT--TA----AGTG-----GGT----------------T---TTTTTAATCTATA--TT-----TATG-GGG-ACGTG-----AGTAATTA----GTGTGTTTGTACAT
gi|8 : gtgCATTTTAATTCGAAGCGTTCACCATATTAGAAAATT---TGACATT-TTGTG--TTTGTAAAATCA-TGAAATACAAAATGT----GG-A-AAAAGTACAATGTTGTAAACAAGGGATAT----ATCCAAAAGTAA-CACGATCAGCCAAAAAACAAGGTAAGTC-----CATTGCTGTACC----ATGTTGGT-T----GC---ACA-T-AT-A--CAGA---------AT---C----ACATGT------ACCGGTGTTTTGAATCCCTTCACCGGACTC-ACTAAT-GAAC--G-ATTAATCATGGATTAAAGAACTCTATGCCTGATCCTTTATCCCT-----------GAATAACAGTCT-------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-A-----ATGACAGTT-TT-TATA------------------TCA-----A----TATT---T---TGTttcatatatatcatttctttatattaatattatgtcaaaactagcataaatatttttttaaatgaccctttatccatataaaacaaatgaaaacatttcaaaaatagattttttttgctgaggtttgaggagacacatt
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATTTGCTGAGGTTTGGGGAAGGGTATTTTTATATGTCCATCTATATTTATTTTTCGCTGCCTGTTTTTTTTTCAACAATGAAATTTCACTGACGAAAATATACATTGTCAAACACAGAGATTTTAAAAATTTAAGTATCAGTTTGTAAAATTGACAGACAATATCAAAGTAGATTTAGAGTCAGATTTACTTCACATAGAAATGTCTCCGGTATCAATCTCCGACTTTTTCAAACTTGTGACAGCTACATGTATTTGAGGCAGGCGATTGACAAAATAGCCTCGTCCAAAACGGTCAAACTGTCACCTACATGTTTTTTGTGTTTCCGACAACTGAATCCGGCATCATTGAATTAGTTGTCGTCTTTTTTTTTTCGATTTCAAACATTTAATTATGTAGTTATGTATACAATGTAAAATAAATAAGGAAAACAC
Unaligned ( gi|22 ): AGTATGTAAATAAAATATGTTTAAGAGTCGGATTAATTTAACATAGAAATTTCTCTGGTACTAATTTCTGCATATTTCTGACCATGTGCCTGCCACACATACCTGAGACAGGAGATTGATGATTGCTAAATTGTAGCCTGAACATATTTTGTTTCAAACAATTGAATCATTGACCTTTTTCTTTTTCAAATTCTGTGTTCTGTATTTCAGTATACATTTTTAAATGGAAAGGGAAAGCACA
Unaligned ( gi|25 ): ATATCACTAACGAAAGCATAATACACTATAACTAAGAGAGATTTTTTTTTAAAAAAATGCAAGCGTTTGCGTATAAATGTAAATAGCCGCGTGTGTGTCAGTGCGTAGAGATTACAAATCATGTTTAAGAGTCGGATTCTCTATAGATAGACATGTCTTCGCTGCTATTTTCCCAAATATTTTTAACGTGTGACTGCGACCCTAAGGATCTGCCTGGAAC
Unaligned ( gi|26 ): TTCTCAGGTATTGATTTCTGAATATTTCCGAGCTGGTGCCAGCGACATGTACCTGGGACAGGAGATTGTAGGTTAGCAGCTTTTAAAATTTCGAATTGTGGCCTATACATATTTTGTTTCCAACAACTGATTCACCCTTGACATTTTTTCTGTTTTAAACGTTTGATTCTATGTTCTGTATTAATTTTTTATATACACTAAAG
Unaligned ( gi|27 ): ACATTTTGACATACAGCAGCATAACTCCATTCTATGTTTGTCGCTACAGGGTACATGTATACGATATAAACCCTACCTATTTTTAATGAAGACAATTTCACTGATGAAACCAAACATTGCCAACTGCAGAGATGCAGAGTATTGTGCAGTATTTTTGGGGTATCAGTAAATTGTTATATTGATGAACAATAATATGTA
Unaligned ( gi|29 ): AACTATCAGTATGTAAATAAAATAGTTGATCATACTAATTGAACATAGACATTTCTTATGAACCTGAGGCAGGAGATTTATGATTAACATATTTTAAAAATATTTTTTGTTGCTAGCAACTGAATTCTCTGTTTTAAACATTTAATTCTATGTTTTATAGTTCTGTATAC
Unaligned ( gi|30 ): CATTTGTATAAATCTAAACATCAAGCAATCAACCTGTTTTCAAGTATAAGTTAAATTCACTTTACATTGAAATTTCTCTGGTACCATCTTCCAAATAACTCTAAACATATGTCTATCTAAAGTAGGAAAGATTGACGATAAACGTATTTTAGCATTTAACTC
Unaligned ( gi|31 ): ATTCAATATCATTTTAAAAAAATGACATTTTCACAACTTTAGAATATCAAAATAGGATTCACAGCCATATTTTCTTTATACAGAAATTCTCATTTCCAAACTGACGACTGCTACATGTACCCGAGTTAACCTATTGACAAACAGCCTCATGAAAC
Unaligned ( gi|34 ): ACTTGCGACTGTGAACCCATTTATAGTCTAAGTGTTCACAGCATGCATACACATTTTGTAAAAATATAAAATACCGGAGAAAAAACACTGTGTAAAGATAAGAGTCAAGGTGCAAGGTAAACCC
Unaligned ( gi|35 ): GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTGTGAAGCATATATAGACTATGCTGTATTTCATATTAA
Unaligned ( gi|37 ): AACTTATCATTAACGATGATATTCTAATATATTGTCAAATCAAGAGAAATTTTAAAAATGCATGCGTTTGTTTAAAAGAGGTAAATAACAGCATG
Unaligned ( gi|52 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTCTCATATAAAT
Alignments
lowQualScore : 22222 44444444444444 11 1111 1111 11 11 1111 11 1 111 111111 111111111111111111111111111111 111111111111111111 111111111111111111
lowQualScore : 3 666 1 2 1 1 77777 1 6 1 77777777777777 8 11 0 2222 1 8 44 2 6 7777 11 77 11 999 0 7777 11 1 0 0 000 4 33 2 2 8888 2 2 4444 2 2 55555 4444 8888 2 4444 333 222 2 33 999999999 444 5555 777777 2 4 55 333333 888888888888888888888888888888 555555555555555555 2 4444 99999999999999 2 2 666666666666666666 444 5555 444 444 2 9999999999999 444 777777777 5 33 55555 2 7 55555 33
lowQualScore : . ... . . . . ..... . . . .............. . .. . .... . . .. . . .... .. .. .. ... . .... .. . . . ... . .. . . .... . . .... . . ..... .... .... . .... ... ... . .. ......... ... .... ...... . . .. ...... .............................. .................. . .... .............. . . .................. ... .... ... ... . ............. ... ......... . .. ..... . . ..... ..
lowQualScore : 6 444 0 5 0 0 77777 0 5 4 00000000000000 0 00 8 2222 0 0 55 0 0 0000 44 44 00 666 8 0000 00 0 6 7 000 4 99 9 9 9999 9 9 5555 1 1 66666 5555 9999 1 5555 777 555 4 22 444444444 111 0000 222222 4 4 00 777777 888888888888888888888888888888 555555555555555555 1 5555 88888888888888 2 2 444444444444444444 111 0000 111 111 7 1111111111111 777 999999999 0 11 66666 2 5 66666 99
consensus : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
Reference ( family-1622 ) : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
gi|1 : -AAAA--A-A-TA---ATGGATTTAACAACACTATATCGGATCCCTTATCTCT-----------G----------T-------TTTTAAGGGGGAGGGGTGGGGGT-GGG----TTGGATTGAAGATTCT-A-----A------TT-TT-TATT------------------TGAAT---G----TATT---TCTTTGTTGTTTATA-TTTTTCCGTG----AG-GTTGGGGATGGG---GTGGGG----TAA-TTTT-AGTGTGTG--TT-----AGGA-TGGGAGGTG-----GATAATG
gi|10 : G---AGACAGTATTGTG--TTTGTAAGAT-A-TGTCATACGAAATAT----AA-G-AAAAGAACAATTTTGTAAACAAAGAGTAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGGT-AACC-----CATCACTGTACC----AT----GT-C----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------A------TTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--ACA-TAATCATGTAATAAAAATCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTC------------------T-GCT----TTGTGTTAATGTGTCT-T-----C------TT-TT-TATA------------------TGAAT---T----TATT---T---TGTTGTTTTTA--TTTTCCGTG----A--G-----GGTGGC---G----G----TAA-ATTTAAGTGTATGTTTT-----TGG--GGGAAAGTG-----GGTAATGAGG--GTGTGTATGTGTGTgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcattataatcatatatactatgatataattcatattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataattacaaataaggtttgggaaggcacattttaacatttcaatctatgtttatttttcgcttcaggccgaaacataaacatacccgttttttcgcgaaaacaaatatcactgacgaaattatacattgtcaattcaaaaatgcaaacaattgtgtaaaagataattatgtaactatcagtatataaataaaatatgtatagattgatttaatatggcaatttctcaggtatcacgttggatctggtgcctctgacatgtacatgagacaggaaattgacgattagaatcttttaaaaatgctaaattgtggcctgtgcatattttgtttgcaacaactgaatcaccattgcccctttactgtttcaaacatttaattatatgttttgtatttcagggtacacttttaaacggaaaaggaaatca
gi|11 : TTCACCATATAAGAATGCG---GGACAGTATTG-G--ATTGTAAGAT-A-TGAAATACGAAATATC---AG-G-AAAA-AACAATTTTGTAAACAAGGAGTAT----ATCC-AAAGCAA-CATTATCAGCCAAAATACAAGGTAAACA-----CATTACTGTACC----AC----GT-C----GT---ACA-A-AA-A--CGGG---------AC---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-G-TAGTCATGGATTAAACAACCCTATGTCTGATCTCGCATCCCC-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCTAA-----A------TT-TT-TATA------------------TGACT---A----TATT---T---TGTTG--TTTA-TTTTCTA--G----AG-G-----GGTGGG---G----G----TAA-TTTCCAGTGTTTG--TT-----TGGA-GGGTAGATG-----GGTAATGAgtatatagtatatatataca
gi|12 : AGCGTTCACCATATTGGAATGCG---GGACAGTTCTGTC--TTTGTAAGAT-A-TAAAATAAGAACTAT----GG-G-AAAAGAACAATTTTAGAAACAAAGGGTAT----ATCC-AAAGC---CA---------AAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GT---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATAGGTGTTTGGAATTCATTTACCTGGCAC-AAAGAT-AAAA--AGA-TAATCATGTATTAAACAACCCAATGTCTGATCCCTTATCCAT-----------A------------------TTTT------------------T-GTT----TTGCTTTAATGCGTCT-A-----A------TT-TT-GATA------------------TAAAT---ACAATTATT---T---TATTGTTTATA-TTTTTCC----------------GGTG-------------------------GTGTGTG--TG-----TGGGTGGGTGGGTG-----GG-GGTGGGG--GGGTGTATGTGTGT
gi|13 : ATTTTGTAAAGAAGAGGTATCATAATCG-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTTTGCC----AT----GT-C----AC---ACA-A-AA-A--CGGG---------AT---C----TCATGT------AAAAGTGTTTGGAATCCCTTTACCTGTCCC-AATGAC-AAAA--A-A--AGTCATAGATTAAACAACCCTATGACTGATCTCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTGATCAAA-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TG-----TAGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATACAT
gi|14 : TGTATTCAAGAGGTAT----AACC-AAAGCAA-CACTATCAGCCAAAATACAA----AACC-----CAT------ACC----AC----GT-C----GA---GCA-A-AACA--CGGG---------AT---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTAATAC-AATGAC-AAAC--A---TAGTCATGTAATAAACAATCGTATGTCTGATCTCTCGTCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAC---A----TATT---T---TGTTGTTTTAATTTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGA--TTATGTATATATATgtatatatagcatatatagactatgatattttcatattaa
gi|15 : acGCGTTCATCATATAAGAATGCG---AGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-GTAAAAAAACAAATTTGTAAACAAGGAGTAT----ATCC-AAAACAA-TACTATCAGTCAAAATACAAGGT-AACC-----CATCACT------------------------------------------GG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCCAAAGGGCAAAAA--A-A-TAACCATGTAATAAACAACTCTATGTCTG----CT--------------------------------------------------------------CT----TTGTGTCAATGTGTCT-T-----A------TT-TT-TATA------------------TTAATATAA----TATT---T---TATTGTTTTTA-TTTTTCCGTG----TG-G-----AGTGGG---G----G----TAA-TTTTTAGTCTATG--TT-----TGGC-GGGAAGGTG-----GGTAACGAatggcataatagactatgatattttcatattaat
gi|16 : tAAC-CATTTTAATTATAAGCGTTCACCATATCAGAATGCA---GGACAGTATTGTG--TTTTTAAAAA-AATAAAATACGAAAAAT----GG-G-AAAAGAATAATTTTGTAAACCAGGGATAT----ATCC-AAAGCTA-CACTATCAGCCAAAATACAAGGTAAACC-----CAAAACTGTACA----AC----GC-C----GC---GCA-A-AA-A--CGTG---------AT---C----ACATGT------AGCGGTCTTTGGTATCGCTTTACCTGAACC-ATTGGT-AAAA--A-A------ATGGATTAAACAACCCAATATCTGATTCCTTATCCCT-----------A----------G-------T---------------------------------TTTTAATGTGTCT-
gi|17 : tgtgAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGATAA-CC-----CATCACTGTATC----AC----GT-T----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTGTTTGAAATCCCTTTACCTGACCC-AATGAC--------------T--TGTATTAAACAACTCTATGTCGGATCCCTCATCCCT-----------A----------T-------TCTT------------------T-GCT----TTGTGTTTATGTGTCT-T-----A------TT-TTTTATA------------------TGAAT---A----TATT---T---CGTTGTTTTTA-TTTTTCCGTG----AA-G-----GGTGGA---G----A----TAC-TTTATAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTAT
gi|18 : TGTACC----AC----GT-TTCTTGC---GCATATAC-A--CGGG---------GT---C----TCATGC------ATCGCTGGTTTGATTCCATTTACCTGATCC-AATAAT-AAAAT-A-A-TATTTATGGA-TAA--AACCCAATGTCTGATCCTTTA-CCCTAACAAAAAAACA----------G-------TTTT------------------T-AAT------------ATGTGTCT-AGTCACA------TTCTT-TATA------------------TCAAT---A----TAAT---T---Ttt
gi|19 : TTGTAAACAAGGG-TAT----ATCC-AAAGCAA-AACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--TGGG---------AT---C----ACAaaaaccaatcctattttttttcttttaaatgtgcatatacatacattgtaacaaataatagcattacaaaaacacattttatttgcaaaggttttgaggggc
gi|19 : AAA--A-A-TGG-----GATCA--CAACCCTATGTCTGTTCTCTCATCCTT-----------A----------T-------TTTT------------------TTGCT----TTGTTTTAAT---------------------C-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTTGG---G----G----TAA-TTTCTAGTGTGTG--TT-----TGAA-GGGTAGGTT-----TGTAATGAGGTTGTGTGGGTGTATAaccctatgtctgttctctcatccttatttttttgctttgttttaatctttatatgaatatattttgttgtttttattttttcgtgaggggttggggtaatttctagtgtgtgtttgaagggtaggtttgtaatgaggttgtgtgggtgtatagaacatatatagactattatattgtttatactaat
gi|2 : ttgtaaacaagggtatatccaaagcaaaactatcagccaaaatacaaggtaaacccattactgtaccacgtcgcgcCAGTCGTTTTAATTGATTAAAGAAATATTTGC-AAAG---TAAATTTGCAGCTGTTTCAAGTGAATTTAGAAGTAAAGTGGAGCGCGTCGTCCAGTGGTACAGCATCGGATTTGAGATCTGAGGTCGTGGGTTCG-ACCTTCCATCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACTGGTTCTACCC----AGGAAGACCTCGAGCGTAATTT--GTCAAAGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTAATAATTAAAACAATAACAACTCATTTTAATTCTAAGCGATCACCATGTTAGATTGCG---GGACAGTATTA-G--ATTGTAAGAT-A-TTAAAAACGAAATAT----AG-G-AAAAGAATAATTTTGTAAACAAGGGGTAT----AGCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----AATTACTGTACC----AC----GT-A----GC---ATA-T-TA-A--CGAG---------AT---C----ACATGT------ATCAGTGTTTGGAATCGCTTTACCTGACTC-AATGAC-AAAA--A-A-TGGTCATGGATTAAACAACCCTATGTCTGATCTCACATCCCT-----------A----------T-------TTTT------------------G-GCT----TTGTTTAAATGTATCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AT-G-----GGTGGG---G----A----TAC-TTTTTAGTGTGTG--TT-----TGGA-GGGTGGGTT-----GGTAATGCAG--ATGTGTGTGTATATgaacatatatagactattatattgtttatactaat
gi|20 : GTGTTCACCATATTTGAATGCG---GGACAGTATTGGG--TTTGTAAGGT-A-TAAAATATGAAATATATATAG-G-AAAAGAACAATTTTGTATACAAGGAGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATGCAAGGTAAACC-----CATTACTGTTCC----AC----GT-C----GC---GCA-G-AA-A--CGGG---------AT---CATATACATGC------ATCGGTGTTTGGAATCCCTTTACCTGA-CC-AATAAC-AAAAACA-A-TAATCATGGATTAAACAGCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TT
gi|21 : ATTTTGTTAACAAGGTGTTT----ATAC-AAAGCAAACACTATCTGCCAAAATACACAGTAAGCC-----CATTACTGTACCACGTAC----GT-T----GC---GCA-c
gi|21 : TAAA-AACCC-ATGATTAACCCTTTGTTCCT-----------A----------CAAAAACATTTT------------------T-GTTCGTTTTGTTTTAATGTGTCT-A-----A------TT-TT-CGTA------------------TGAAT---A----TATTTTGT---TGTTGTTTTTA-TTTTTTCAT--------G-----GGTGGGGTTG----G----TAA-TGTTCAGTTTGTG--TT-----GGGT-GGG-AGGGGGCGAAGGCAATGAtataaagcctaaaaacccatgattaaccctttgttcctacaaaaacatttttgttcgttttgttttaatgtgtctaattttcgtatgaatatattttgttgttgtttttattttttcatgggtggggttggtaatgttcagtttgtgttgggtgggagggggcgaaggcaatga
gi|23 : attttgttaacaaggtgtttatacaaagcaaacactatctgccaaaatacacagtaagcccattactgtaccacgtacgttgcgcatataaagcc----------T-------TGTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATATGAATATATTTGAATATATGAAT---A----TATT---T---TGTT--TTTTA-TTTTTTCGTG----AG-T-----GGTTGG---G----G----TAA-TTTTAAGTGTATG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATAT
gi|24 : tACCATATTAGAATGCATATAAATAGCATT--------------------AAATATGATTTAT----CTTG-AAAAGAACTACTTTGTAAG----------------------GCAA-CACCACAAGCCAAATTACAAGGTAGACCAACCACATTCCT-TAT------------T-C----AT---ATA-T-AC-ATTCGGG---------ACGACC----ACATGTGACAGCATCGGTGCTTGGAACCGCTTTACATGATGC-AAT----AAAA--A-A--AATCA-AGATTAACCAACGCTATGTCTGGTCCCTatatatatagatatttttcatattaatattatgtaaaacccaccatattttttctttgaaatgaggttatatccata
gi|28 : tAAACAACCCTATGCCTGATCTTTCATCCCT-----------T----------T-------TTTT------------------T-GCT----CTATTTCAAT---------------------T-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTTGTG----AG-G-----GATGGG---G----G----TAATTTTTTTGTGTGCG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATATtcta
gi|3 : TTTTAGAGTGTG--TT-----TGGA-GGGGAGGTG-----GGTGATGAGG--GTGTGTATatatatagcatatatagactatgatatttttcatactaa
gi|32 : gaaTAATT-TAATCATTCAC---AGTAGAAAGCATACAAACGACATCGCGCGTTTATTCAAC-A-GAAAATAC------T----GG-G-AAAAGAACCATTTTGTAATCAAAGACTAC----ATGC-AAAGCAA-CACTTGGAGTCATAATAGAAGGTATACagctacacagatacatgtatatagcaactatagattgtgatattcctcacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacaatgataacattacaaaaaatagattgtattgctgatgtgtggggaggcatattttaacagatcaatctatttttatttttcgctacaggccaaaatatggatttacccgtgtttatacgacacaaaaatcactgacgaaataatacattgtcaatttaaaaatatgcaagcatttgtgtaaaaatatattactatcagtatgtaaatcaatatgtttaaaagtcagattaatgtaacatagaattttcacagttactcatttccgagtattttccaacctggtgcctgcgatagatgcctgagacatgagactgacgattagcatctttaaaaattctgaattgtgacatgtgcatattttgtttcaaacaattgaatcatcatttgtatgtttcaaacatttaattccatgttctgtatttcactatacacttttaaacggaaagggcaagcacatat
gi|33 : accattaaCATGGTTGTGT--TGTGTCCC--------------TGAAG--CAAG-TGTTTTATCTGC------TT-A-ATAATGG------CT----AAAAAGATGTCCAGCATGATTTACATCA----TTTATATTAGATCTTGTGTCTCACAAT
gi|36 : tgggctattggtacaatccccaagtcAA-TGTTTAGTGT--G--TT-----TGGA-GGGAAGGTG-----GGTAATGAGG--GTGTTTGTATATAagtc
gi|38 : agaataAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGTTAAACT-----TATTACTGTACA----TC----AT-C----GC---GCattataaagcatatatagaatatgatagtcttcatattaa
gi|39 : -AATGAC-AAAA--ACA-TAGTCATGGATTAAACAACCCTTTGCCTGATCTCTTATTCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------T
gi|4 : AAC-CATTTTAATTCTAAGTGTTCGTCATATTAGAAT-CT---GGACAGTATTGTG--TTTGTAAAAT-A-TGAAATACGAAATAT----TG-G-AAAAGAACA-CTTTGTAAACAAGCAGTAC----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACT-----CATTACTGTACC----ACATTTGT-C----GT---GCA-A-TA-A--CGGG---------AT---C----GCATGT------ATTGGTA--TGGAATCCCGTTACCTGACCC-AATAGTAAAAA--A-A-TA--TATTTATTAAACATTCCTATGTCTGATCCCTTATCCCT-----------A------------------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-------A------TT-TC-TATA------------------AGA-----A----TATT---T---TG-CGTTTATA-TTTTTTCGTG----A--A-----GGTGGA---G----AGGACTAATTTTTTAGTGTGTG--TTTTTAGTGGG-GGG--AGTG-----GATAATGA-G--GTATGTGTGTATATa
gi|40 : ATCTGAGGTTGTGTGTTTGAA---CCCAACA-GGTCATGTGGTATGTCCTTAAATTAATATAAATA-AG--CTAGACACTTTATCCGAAAGACTTT-atcataatttatatatagactatgatattcttcatgttgatattatgtcccaccatagttttattttaatgagcctatatccatataaagcaaatacaagtataaacattacaaaaatagatatttttgctgagatttggtgaggcatattgtaacatcaattatatgaatgtttttcactacagaccaaaatataaacttaccctttttt
gi|41 : CAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TTAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|42 : agCAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TAAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|43 : agCAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAGGTGAATTAAGAA
gi|44 : agTTAAAAACACATTTGC-AAAGAAGTAAATCTGTATCTGTTTCAAGTGAATTT-----TAGAGTG
gi|45 : tcgtttcgCTAG-CTTTTGTCTACCAGTTCTATCC----AGGAAGAC-----------TTT--GTC----T----------AATT--TGTTTTACAATCAATGTAAA
gi|46 : TTGATTAAAGAAATATTAGCAAAAG---CAAGTTTGTTGCTGTT--GAGTGAACTTAGAAATAA
gi|47 : tcttGGATCTACCCTCGCAGGGA----TTGAGCTAGATTG--GTTAAGGTTTTA----AAAACT--TGTTT
gi|48 : tTCGTTTTGATTAATTAAATAACTATTTGC-AAAT---TAAGTTTGCAACTGTTTC
gi|49 : agctaGCGTTCACCATATTAGAATGCG---TGATATTTTTATG--TTTGTAAAAC-A-TGAAA
gi|5 : TTTTGATGTGTG--TT-----TGGA-AAAGAGTTA-----GGTAATGAGG--GTGTGTGTGTATAT
gi|50 : aCAGTCGTTTTAGTTAATTAAAGAAATATTTGC-AAAG---TAAGTTTACAGatagcatatatatactaggatattcttcatatcaatatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacacatactaacattacaaataaaatatttgctgaggtttggcacggcatattctaacctatcaatcgccttcaggccgaaatattttcacttagcaaaaataactgaggaaattatacattttaatttaaaaatacaagcatttgtgtaaaatatatgaaactattagtatgtatataaaatatatttaaaagtcagattgatttaacattgaaagttctcaggtacaaatgtccaaatatttccaaccttgtgcctgtacgtatctgagacaggagattgacgattataatattttaataaattctgaatagtggcctgtacatattttgtttcaaacaacttaaacaacattgactttttactgtttcagtcatttaattacgtgttctgtatgtctatatacacttttaaactgaaagggaaataaatatgcctag
gi|51 : agCAGTCGTTATAATCAATTAAAGAAATATTTGC-AAAG---TAAGCTTGCA
gi|53 : agCAGTCGTTTTAATTAATCAAAGAAATATTTGC-AAAG---TAAGTTTa
gi|54 : gATGTGGTGTGTTCT--------------TG-AGCACAAGACACTTTTTCCGCc
gi|6 : CAGTCGTTTTAATTAATTAAAGAAATATTTGT-AAAG---TAAGGTTGCCGCTGTTTCAAGTGAATTTAAAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTAGGTTCG-A---TCCACCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACCTTATCTGCCTG-CATA-ATTTACTGGTTCTACCT----AGCAAGATCTCGAGCATGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTACAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCACATTAGAATGCG---GGACAGTA-TAAG--ATTGTGAGAT-A-TGACCTACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAACCAAAATAAAATGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCT-A-AA-A--CGGGTATCCGGGTAT---C----ACATGT------ATCCGTGTTTGGAATCCCTTTACCTGACGC-ATTGAA-AAAA--A-A----TCAGGAATTAAACAACA--ATGTCTGATCTCTCATCCCT-----------A----------T-------TTT
gi|7 : agAACT-ATTTCAATTCTAAGCGTTCACCATATTA-AATGCG---GGACAGTATTGTG--TTTGTAAAAC-A-----ATACGAAATAT----AG-G-AAAAAAACAATTT---------------------------AACAA-CACTACCAG-------------TAAACC------ATTACTGTACC----AC----GTTC----GCCGAGCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTG----------CTTTACCAGACCC------C-----------T--TCATGGATTAAACAACCCTATGTCTGACCCGTTATCCTT-----------A----------T-------TTTA--------------------GTT----TTGTTTCATTGTCTCT-A-----A------TT-TC-TATA------------------TTAAT---A----TATT---T---TGTTGTTGTTT-TTATTT--TA----AGTG-----GGT----------------T---TTTTTAATCTATA--TT-----TATG-GGG-ACGTG-----AGTAATTA----GTGTGTTTGTACAT
gi|8 : gtgCATTTTAATTCGAAGCGTTCACCATATTAGAAAATT---TGACATT-TTGTG--TTTGTAAAATCA-TGAAATACAAAATGT----GG-A-AAAAGTACAATGTTGTAAACAAGGGATAT----ATCCAAAAGTAA-CACGATCAGCCAAAAAACAAGGTAAGTC-----CATTGCTGTACC----ATGTTGGT-T----GC---ACA-T-AT-A--CAGA---------AT---C----ACATGT------ACCGGTGTTTTGAATCCCTTCACCGGACTC-ACTAAT-GAAC--G-ATTAATCATGGATTAAAGAACTCTATGCCTGATCCTTTATCCCT-----------GAATAACAGTCT-------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-A-----ATGACAGTT-TT-TATA------------------TCA-----A----TATT---T---TGTttcatatatatcatttctttatattaatattatgtcaaaactagcataaatatttttttaaatgaccctttatccatataaaacaaatgaaaacatttcaaaaatagattttttttgctgaggtttgaggagacacatt
blockSeqs : A AAG A C T G AA A T G TAAATTAATATAAA A CA AAGA T T TC T T TCGC TG AT AC AAG TATT TG T T TAT T CG C A ATAT T T CATA A A AACCA ACGT ATTT T TCTT CGA TAT C TT TATCCGGGT GAC ATAT GACAGC A A AC CATAA AACAAAAAAACAG . T CGTT AATGACAG C T TGAATATATTTGAATATA ATA CAAT TTG . T ATCAAAG GTT AGGAC T TT TTTAG T A GCGAA TT
blockSeqs : . . A C A C C G . . . TAG T . TT C A . TC TA . AAG . . T TAC T . . . C . . . . . . . GTTG . . . A . . . . . . . A T GATAA GAATAACAGTCT . . . AGTCACA . . . . . . . . AGTG . G T . . . T . .
blockSeqs : . . A A . A . . . CTG A . A T T . C AT . A . . T . T . . . . . . . . . . . . . . . A . . . . . . . . . CATAG ACAAAAACA . . . AAA . . . . . . . . AGG . G . . . . T . .
blockSeqs : . . T C . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . A . . . . . . . . . ATTAA AT . . . TC . . . . . . . . AGG . G . . . . T . .
blockSeqs : . . T . . C . . . . . . . . . . . . . . . A . . . . . . . . . GTAG AT . . . AA . . . . . . . . TGG . G . . . . T . .
blockSeqs : . . T . T . . . . . . . . . . . . . . . A . . . . . . . . . ATAA AT . . . AA . . . . . . . . AAG . G . . . . A . .
blockSeqs : . . . T . . . . . . . . . . . . . . . A . . . . . . . . . ATAT AT . . . AA . . . . . . . . AGG . A . . . . T . .
blockSeqs : . . . A . . . . . . . . . . . . . . . A . . . . . . . . . ATGG AG . . . TA . . . . . . . . ATG . G . . . . T . .
blockSeqs : . . . T . . . . . . . . . . . . . . . T . . . . . . . . . ATGG AT . . . TA . . . . . . . . AGT . A . . . . T . .
blockSeqs : . . . T . . . . . . . . . . . . . . . G . . . . . . . . . ATAA AT . . . AA . . . . . . . . AGG . G . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . . AAG AT . . . AA . . . . . . . . AG . G . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . . . . . . . TAG AT . . . AA . . . . . . . . AA . G . . . . G . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . . . . . . . AAA TT . . . AA . . . . . . . . G . . . . . . A . .
blockSeqs : . . . . . . . . . A . . . . . . . . . ATA AT . . . AA . . . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . T . . . . . . . . . A AT . . . A . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . A AT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . T A . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . A . . .
blockSeqs : .
blockSeqCons : ATAG** ****************** *** AGG********** G********
originalCons : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
finalCons : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--AATAG--TCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTGAGG----------GGTGGG---GG--------TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATTTGCTGAGGTTTGGGGAAGGGTATTTTTATATGTCCATCTATATTTATTTTTCGCTGCCTGTTTTTTTTTCAACAATGAAATTTCACTGACGAAAATATACATTGTCAAACACAGAGATTTTAAAAATTTAAGTATCAGTTTGTAAAATTGACAGACAATATCAAAGTAGATTTAGAGTCAGATTTACTTCACATAGAAATGTCTCCGGTATCAATCTCCGACTTTTTCAAACTTGTGACAGCTACATGTATTTGAGGCAGGCGATTGACAAAATAGCCTCGTCCAAAACGGTCAAACTGTCACCTACATGTTTTTTGTGTTTCCGACAACTGAATCCGGCATCATTGAATTAGTTGTCGTCTTTTTTTTTTCGATTTCAAACATTTAATTATGTAGTTATGTATACAATGTAAAATAAATAAGGAAAACAC
Unaligned ( gi|22 ): AGTATGTAAATAAAATATGTTTAAGAGTCGGATTAATTTAACATAGAAATTTCTCTGGTACTAATTTCTGCATATTTCTGACCATGTGCCTGCCACACATACCTGAGACAGGAGATTGATGATTGCTAAATTGTAGCCTGAACATATTTTGTTTCAAACAATTGAATCATTGACCTTTTTCTTTTTCAAATTCTGTGTTCTGTATTTCAGTATACATTTTTAAATGGAAAGGGAAAGCACA
Unaligned ( gi|25 ): ATATCACTAACGAAAGCATAATACACTATAACTAAGAGAGATTTTTTTTTAAAAAAATGCAAGCGTTTGCGTATAAATGTAAATAGCCGCGTGTGTGTCAGTGCGTAGAGATTACAAATCATGTTTAAGAGTCGGATTCTCTATAGATAGACATGTCTTCGCTGCTATTTTCCCAAATATTTTTAACGTGTGACTGCGACCCTAAGGATCTGCCTGGAAC
Unaligned ( gi|26 ): TTCTCAGGTATTGATTTCTGAATATTTCCGAGCTGGTGCCAGCGACATGTACCTGGGACAGGAGATTGTAGGTTAGCAGCTTTTAAAATTTCGAATTGTGGCCTATACATATTTTGTTTCCAACAACTGATTCACCCTTGACATTTTTTCTGTTTTAAACGTTTGATTCTATGTTCTGTATTAATTTTTTATATACACTAAAG
Unaligned ( gi|27 ): ACATTTTGACATACAGCAGCATAACTCCATTCTATGTTTGTCGCTACAGGGTACATGTATACGATATAAACCCTACCTATTTTTAATGAAGACAATTTCACTGATGAAACCAAACATTGCCAACTGCAGAGATGCAGAGTATTGTGCAGTATTTTTGGGGTATCAGTAAATTGTTATATTGATGAACAATAATATGTA
Unaligned ( gi|29 ): AACTATCAGTATGTAAATAAAATAGTTGATCATACTAATTGAACATAGACATTTCTTATGAACCTGAGGCAGGAGATTTATGATTAACATATTTTAAAAATATTTTTTGTTGCTAGCAACTGAATTCTCTGTTTTAAACATTTAATTCTATGTTTTATAGTTCTGTATAC
Unaligned ( gi|30 ): CATTTGTATAAATCTAAACATCAAGCAATCAACCTGTTTTCAAGTATAAGTTAAATTCACTTTACATTGAAATTTCTCTGGTACCATCTTCCAAATAACTCTAAACATATGTCTATCTAAAGTAGGAAAGATTGACGATAAACGTATTTTAGCATTTAACTC
Unaligned ( gi|31 ): ATTCAATATCATTTTAAAAAAATGACATTTTCACAACTTTAGAATATCAAAATAGGATTCACAGCCATATTTTCTTTATACAGAAATTCTCATTTCCAAACTGACGACTGCTACATGTACCCGAGTTAACCTATTGACAAACAGCCTCATGAAAC
Unaligned ( gi|34 ): ACTTGCGACTGTGAACCCATTTATAGTCTAAGTGTTCACAGCATGCATACACATTTTGTAAAAATATAAAATACCGGAGAAAAAACACTGTGTAAAGATAAGAGTCAAGGTGCAAGGTAAACCC
Unaligned ( gi|35 ): GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTGTGAAGCATATATAGACTATGCTGTATTTCATATTAA
Unaligned ( gi|37 ): AACTTATCATTAACGATGATATTCTAATATATTGTCAAATCAAGAGAAATTTTAAAAATGCATGCGTTTGTTTAAAAGAGGTAAATAACAGCATG
Unaligned ( gi|52 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTCTCATATAAAT
Alignments
lowQualScore : 22222 44444444444444 11 1111 1111 11 11 1111 11 1 111 111111 111111111111111111111111111111 111111111111111111 111111111111111111
lowQualScore : 3 666 1 2 1 1 77777 1 6 1 77777777777777 8 11 0 2222 1 8 44 2 6 7777 11 77 11 999 0 7777 11 1 0 0 000 4 33 2 2 8888 2 2 4444 2 2 55555 4444 8888 2 4444 333 222 2 33 999999999 444 5555 777777 2 4 55 333333 888888888888888888888888888888 555555555555555555 2 4444 99999999999999 2 2 666666666666666666 444 5555 444 444 2 9999999999999 444 777777777 5 33 55555 2 7 55555 33
lowQualScore : . ... . . . . ..... . . . .............. . .. . .... . . .. . . .... .. .. .. ... . .... .. . . . ... . .. . . .... . . .... . . ..... .... .... . .... ... ... . .. ......... ... .... ...... . . .. ...... .............................. .................. . .... .............. . . .................. ... .... ... ... . ............. ... ......... . .. ..... . . ..... ..
lowQualScore : 6 444 0 5 0 0 77777 0 5 4 00000000000000 0 00 8 2222 0 0 55 0 0 0000 44 44 00 666 8 0000 00 0 6 7 000 4 99 9 9 9999 9 9 5555 1 1 66666 5555 9999 1 5555 777 555 4 22 444444444 111 0000 222222 4 4 00 777777 888888888888888888888888888888 555555555555555555 1 5555 88888888888888 2 2 444444444444444444 111 0000 111 111 7 1111111111111 777 999999999 0 11 66666 2 5 66666 99
consensus : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
Reference ( family-1622 ) : CAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAAGTGAATTNAGAACTAAAGTGGAGCGCGTCGTCCANTGGTANAGCATCGGATTCGAGATCTGAGGTCGTGGGTTCG-A---TCCANCACGGCTATGTGGTGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACCGGTTCTACCC----AGGAAGACCTCGAGCGTGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTNATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCATATTAGAATGCG---GGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--CGGG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-A-TAGTCATGGATTAAACAACCCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTGTATAT
gi|1 : -AAAA--A-A-TA---ATGGATTTAACAACACTATATCGGATCCCTTATCTCT-----------G----------T-------TTTTAAGGGGGAGGGGTGGGGGT-GGG----TTGGATTGAAGATTCT-A-----A------TT-TT-TATT------------------TGAAT---G----TATT---TCTTTGTTGTTTATA-TTTTTCCGTG----AG-GTTGGGGATGGG---GTGGGG----TAA-TTTT-AGTGTGTG--TT-----AGGA-TGGGAGGTG-----GATAATG
gi|10 : G---AGACAGTATTGTG--TTTGTAAGAT-A-TGTCATACGAAATAT----AA-G-AAAAGAACAATTTTGTAAACAAAGAGTAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGGT-AACC-----CATCACTGTACC----AT----GT-C----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------A------TTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--ACA-TAATCATGTAATAAAAATCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TTTC------------------T-GCT----TTGTGTTAATGTGTCT-T-----C------TT-TT-TATA------------------TGAAT---T----TATT---T---TGTTGTTTTTA--TTTTCCGTG----A--G-----GGTGGC---G----G----TAA-ATTTAAGTGTATGTTTT-----TGG--GGGAAAGTG-----GGTAATGAGG--GTGTGTATGTGTGTgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcattataatcatatatactatgatataattcatattattnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaataattacaaataaggtttgggaaggcacattttaacatttcaatctatgtttatttttcgcttcaggccgaaacataaacatacccgttttttcgcgaaaacaaatatcactgacgaaattatacattgtcaattcaaaaatgcaaacaattgtgtaaaagataattatgtaactatcagtatataaataaaatatgtatagattgatttaatatggcaatttctcaggtatcacgttggatctggtgcctctgacatgtacatgagacaggaaattgacgattagaatcttttaaaaatgctaaattgtggcctgtgcatattttgtttgcaacaactgaatcaccattgcccctttactgtttcaaacatttaattatatgttttgtatttcagggtacacttttaaacggaaaaggaaatca
gi|11 : TTCACCATATAAGAATGCG---GGACAGTATTG-G--ATTGTAAGAT-A-TGAAATACGAAATATC---AG-G-AAAA-AACAATTTTGTAAACAAGGAGTAT----ATCC-AAAGCAA-CATTATCAGCCAAAATACAAGGTAAACA-----CATTACTGTACC----AC----GT-C----GT---ACA-A-AA-A--CGGG---------AC---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTGACCC-AATGAC-AAAA--A-G-TAGTCATGGATTAAACAACCCTATGTCTGATCTCGCATCCCC-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCTAA-----A------TT-TT-TATA------------------TGACT---A----TATT---T---TGTTG--TTTA-TTTTCTA--G----AG-G-----GGTGGG---G----G----TAA-TTTCCAGTGTTTG--TT-----TGGA-GGGTAGATG-----GGTAATGAgtatatagtatatatataca
gi|12 : AGCGTTCACCATATTGGAATGCG---GGACAGTTCTGTC--TTTGTAAGAT-A-TAAAATAAGAACTAT----GG-G-AAAAGAACAATTTTAGAAACAAAGGGTAT----ATCC-AAAGC---CA---------AAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GT---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATAGGTGTTTGGAATTCATTTACCTGGCAC-AAAGAT-AAAA--AGA-TAATCATGTATTAAACAACCCAATGTCTGATCCCTTATCCAT-----------A------------------TTTT------------------T-GTT----TTGCTTTAATGCGTCT-A-----A------TT-TT-GATA------------------TAAAT---ACAATTATT---T---TATTGTTTATA-TTTTTCC----------------GGTG-------------------------GTGTGTG--TG-----TGGGTGGGTGGGTG-----GG-GGTGGGG--GGGTGTATGTGTGT
gi|13 : ATTTTGTAAAGAAGAGGTATCATAATCG-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----CATTACTTTGCC----AT----GT-C----AC---ACA-A-AA-A--CGGG---------AT---C----TCATGT------AAAAGTGTTTGGAATCCCTTTACCTGTCCC-AATGAC-AAAA--A-A--AGTCATAGATTAAACAACCCTATGACTGATCTCTCATCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTGATCAAA-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TG-----TAGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATACAT
gi|14 : TGTATTCAAGAGGTAT----AACC-AAAGCAA-CACTATCAGCCAAAATACAA----AACC-----CAT------ACC----AC----GT-C----GA---GCA-A-AACA--CGGG---------AT---C----ACATGT------ATCAGTGTTTGGAATCCCTTTACCTAATAC-AATGAC-AAAC--A---TAGTCATGTAATAAACAATCGTATGTCTGATCTCTCGTCCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------TGAAC---A----TATT---T---TGTTGTTTTAATTTTTTTCGTG----AG-G-----GGTGGG---G----G----TAA-TTTTTAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGA--TTATGTATATATATgtatatatagcatatatagactatgatattttcatattaa
gi|15 : acGCGTTCATCATATAAGAATGCG---AGACAGTATTGTG--TTTGTAAGAT-A-TGAAATACGAAATAT----AG-GTAAAAAAACAAATTTGTAAACAAGGAGTAT----ATCC-AAAACAA-TACTATCAGTCAAAATACAAGGT-AACC-----CATCACT------------------------------------------GG---------AT---C----ACATGT------ATCGGTGTTTGGAATCCCTTTACCTGACCCAAAGGGCAAAAA--A-A-TAACCATGTAATAAACAACTCTATGTCTG----CT--------------------------------------------------------------CT----TTGTGTCAATGTGTCT-T-----A------TT-TT-TATA------------------TTAATATAA----TATT---T---TATTGTTTTTA-TTTTTCCGTG----TG-G-----AGTGGG---G----G----TAA-TTTTTAGTCTATG--TT-----TGGC-GGGAAGGTG-----GGTAACGAatggcataatagactatgatattttcatattaat
gi|16 : tAAC-CATTTTAATTATAAGCGTTCACCATATCAGAATGCA---GGACAGTATTGTG--TTTTTAAAAA-AATAAAATACGAAAAAT----GG-G-AAAAGAATAATTTTGTAAACCAGGGATAT----ATCC-AAAGCTA-CACTATCAGCCAAAATACAAGGTAAACC-----CAAAACTGTACA----AC----GC-C----GC---GCA-A-AA-A--CGTG---------AT---C----ACATGT------AGCGGTCTTTGGTATCGCTTTACCTGAACC-ATTGGT-AAAA--A-A------ATGGATTAAACAACCCAATATCTGATTCCTTATCCCT-----------A----------G-------T---------------------------------TTTTAATGTGTCT-
gi|17 : tgtgAT----ATCC-AAAACAA-CACTATCAGTCAAAATACAAGATAA-CC-----CATCACTGTATC----AC----GT-T----GC---GCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTGTTTGAAATCCCTTTACCTGACCC-AATGAC--------------T--TGTATTAAACAACTCTATGTCGGATCCCTCATCCCT-----------A----------T-------TCTT------------------T-GCT----TTGTGTTTATGTGTCT-T-----A------TT-TTTTATA------------------TGAAT---A----TATT---T---CGTTGTTTTTA-TTTTTCCGTG----AA-G-----GGTGGA---G----A----TAC-TTTATAGTGTGTG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTAT
gi|18 : TGTACC----AC----GT-TTCTTGC---GCATATAC-A--CGGG---------GT---C----TCATGC------ATCGCTGGTTTGATTCCATTTACCTGATCC-AATAAT-AAAAT-A-A-TATTTATGGA-TAA--AACCCAATGTCTGATCCTTTA-CCCTAACAAAAAAACA----------G-------TTTT------------------T-AAT------------ATGTGTCT-AGTCACA------TTCTT-TATA------------------TCAAT---A----TAAT---T---Ttt
gi|19 : TTGTAAACAAGGG-TAT----ATCC-AAAGCAA-AACTATCAGCCAAAATACAAGGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCA-A-AA-A--TGGG---------AT---C----ACAaaaaccaatcctattttttttcttttaaatgtgcatatacatacattgtaacaaataatagcattacaaaaacacattttatttgcaaaggttttgaggggc
gi|19 : AAA--A-A-TGG-----GATCA--CAACCCTATGTCTGTTCTCTCATCCTT-----------A----------T-------TTTT------------------TTGCT----TTGTTTTAAT---------------------C-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AG-G-----GGTTGG---G----G----TAA-TTTCTAGTGTGTG--TT-----TGAA-GGGTAGGTT-----TGTAATGAGGTTGTGTGGGTGTATAaccctatgtctgttctctcatccttatttttttgctttgttttaatctttatatgaatatattttgttgtttttattttttcgtgaggggttggggtaatttctagtgtgtgtttgaagggtaggtttgtaatgaggttgtgtgggtgtatagaacatatatagactattatattgtttatactaat
gi|2 : ttgtaaacaagggtatatccaaagcaaaactatcagccaaaatacaaggtaaacccattactgtaccacgtcgcgcCAGTCGTTTTAATTGATTAAAGAAATATTTGC-AAAG---TAAATTTGCAGCTGTTTCAAGTGAATTTAGAAGTAAAGTGGAGCGCGTCGTCCAGTGGTACAGCATCGGATTTGAGATCTGAGGTCGTGGGTTCG-ACCTTCCATCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACTTTATCCGCCAG-CTTT-ATTTACTGGTTCTACCC----AGGAAGACCTCGAGCGTAATTT--GTCAAAGTTTTA----AAAACT--TGTTTCACAATCGATGTAAAATTAATAATTAAAACAATAACAACTCATTTTAATTCTAAGCGATCACCATGTTAGATTGCG---GGACAGTATTA-G--ATTGTAAGAT-A-TTAAAAACGAAATAT----AG-G-AAAAGAATAATTTTGTAAACAAGGGGTAT----AGCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACC-----AATTACTGTACC----AC----GT-A----GC---ATA-T-TA-A--CGAG---------AT---C----ACATGT------ATCAGTGTTTGGAATCGCTTTACCTGACTC-AATGAC-AAAA--A-A-TGGTCATGGATTAAACAACCCTATGTCTGATCTCACATCCCT-----------A----------T-------TTTT------------------G-GCT----TTGTTTAAATGTATCT-A-----A------TT-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTCGTG----AT-G-----GGTGGG---G----A----TAC-TTTTTAGTGTGTG--TT-----TGGA-GGGTGGGTT-----GGTAATGCAG--ATGTGTGTGTATATgaacatatatagactattatattgtttatactaat
gi|20 : GTGTTCACCATATTTGAATGCG---GGACAGTATTGGG--TTTGTAAGGT-A-TAAAATATGAAATATATATAG-G-AAAAGAACAATTTTGTATACAAGGAGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATGCAAGGTAAACC-----CATTACTGTTCC----AC----GT-C----GC---GCA-G-AA-A--CGGG---------AT---CATATACATGC------ATCGGTGTTTGGAATCCCTTTACCTGA-CC-AATAAC-AAAAACA-A-TAATCATGGATTAAACAGCTCTATGTCTGATCCCTCATCCCT-----------A----------T-------TT
gi|21 : ATTTTGTTAACAAGGTGTTT----ATAC-AAAGCAAACACTATCTGCCAAAATACACAGTAAGCC-----CATTACTGTACCACGTAC----GT-T----GC---GCA-c
gi|21 : TAAA-AACCC-ATGATTAACCCTTTGTTCCT-----------A----------CAAAAACATTTT------------------T-GTTCGTTTTGTTTTAATGTGTCT-A-----A------TT-TT-CGTA------------------TGAAT---A----TATTTTGT---TGTTGTTTTTA-TTTTTTCAT--------G-----GGTGGGGTTG----G----TAA-TGTTCAGTTTGTG--TT-----GGGT-GGG-AGGGGGCGAAGGCAATGAtataaagcctaaaaacccatgattaaccctttgttcctacaaaaacatttttgttcgttttgttttaatgtgtctaattttcgtatgaatatattttgttgttgtttttattttttcatgggtggggttggtaatgttcagtttgtgttgggtgggagggggcgaaggcaatga
gi|23 : attttgttaacaaggtgtttatacaaagcaaacactatctgccaaaatacacagtaagcccattactgtaccacgtacgttgcgcatataaagcc----------T-------TGTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATATGAATATATTTGAATATATGAAT---A----TATT---T---TGTT--TTTTA-TTTTTTCGTG----AG-T-----GGTTGG---G----G----TAA-TTTTAAGTGTATG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATAT
gi|24 : tACCATATTAGAATGCATATAAATAGCATT--------------------AAATATGATTTAT----CTTG-AAAAGAACTACTTTGTAAG----------------------GCAA-CACCACAAGCCAAATTACAAGGTAGACCAACCACATTCCT-TAT------------T-C----AT---ATA-T-AC-ATTCGGG---------ACGACC----ACATGTGACAGCATCGGTGCTTGGAACCGCTTTACATGATGC-AAT----AAAA--A-A--AATCA-AGATTAACCAACGCTATGTCTGGTCCCTatatatatagatatttttcatattaatattatgtaaaacccaccatattttttctttgaaatgaggttatatccata
gi|28 : tAAACAACCCTATGCCTGATCTTTCATCCCT-----------T----------T-------TTTT------------------T-GCT----CTATTTCAAT---------------------T-TT-TATA------------------TGAAT---A----TATT---T---TGTTGTTTTTA-TTTTTTTGTG----AG-G-----GATGGG---G----G----TAATTTTTTTGTGTGCG--TT-----TGGA-GGGTAGGTG-----GGTAATGAGG--GTGTGTGTATATATtcta
gi|3 : TTTTAGAGTGTG--TT-----TGGA-GGGGAGGTG-----GGTGATGAGG--GTGTGTATatatatagcatatatagactatgatatttttcatactaa
gi|32 : gaaTAATT-TAATCATTCAC---AGTAGAAAGCATACAAACGACATCGCGCGTTTATTCAAC-A-GAAAATAC------T----GG-G-AAAAGAACCATTTTGTAATCAAAGACTAC----ATGC-AAAGCAA-CACTTGGAGTCATAATAGAAGGTATACagctacacagatacatgtatatagcaactatagattgtgatattcctcacatcaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaaacaatgataacattacaaaaaatagattgtattgctgatgtgtggggaggcatattttaacagatcaatctatttttatttttcgctacaggccaaaatatggatttacccgtgtttatacgacacaaaaatcactgacgaaataatacattgtcaatttaaaaatatgcaagcatttgtgtaaaaatatattactatcagtatgtaaatcaatatgtttaaaagtcagattaatgtaacatagaattttcacagttactcatttccgagtattttccaacctggtgcctgcgatagatgcctgagacatgagactgacgattagcatctttaaaaattctgaattgtgacatgtgcatattttgtttcaaacaattgaatcatcatttgtatgtttcaaacatttaattccatgttctgtatttcactatacacttttaaacggaaagggcaagcacatat
gi|33 : accattaaCATGGTTGTGT--TGTGTCCC--------------TGAAG--CAAG-TGTTTTATCTGC------TT-A-ATAATGG------CT----AAAAAGATGTCCAGCATGATTTACATCA----TTTATATTAGATCTTGTGTCTCACAAT
gi|36 : tgggctattggtacaatccccaagtcAA-TGTTTAGTGT--G--TT-----TGGA-GGGAAGGTG-----GGTAATGAGG--GTGTTTGTATATAagtc
gi|38 : agaataAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGTTAAACT-----TATTACTGTACA----TC----AT-C----GC---GCattataaagcatatatagaatatgatagtcttcatattaa
gi|39 : -AATGAC-AAAA--ACA-TAGTCATGGATTAAACAACCCTTTGCCTGATCTCTTATTCCT-----------A----------T-------TTTT------------------T-GCT----TTGTTTTAATGTGTCT-A-----A------TT-TT-TATA------------------T
gi|4 : AAC-CATTTTAATTCTAAGTGTTCGTCATATTAGAAT-CT---GGACAGTATTGTG--TTTGTAAAAT-A-TGAAATACGAAATAT----TG-G-AAAAGAACA-CTTTGTAAACAAGCAGTAC----ATCC-AAAGCAA-CACTATCAGCCAAAATACAAGGTAAACT-----CATTACTGTACC----ACATTTGT-C----GT---GCA-A-TA-A--CGGG---------AT---C----GCATGT------ATTGGTA--TGGAATCCCGTTACCTGACCC-AATAGTAAAAA--A-A-TA--TATTTATTAAACATTCCTATGTCTGATCCCTTATCCCT-----------A------------------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-------A------TT-TC-TATA------------------AGA-----A----TATT---T---TG-CGTTTATA-TTTTTTCGTG----A--A-----GGTGGA---G----AGGACTAATTTTTTAGTGTGTG--TTTTTAGTGGG-GGG--AGTG-----GATAATGA-G--GTATGTGTGTATATa
gi|40 : ATCTGAGGTTGTGTGTTTGAA---CCCAACA-GGTCATGTGGTATGTCCTTAAATTAATATAAATA-AG--CTAGACACTTTATCCGAAAGACTTT-atcataatttatatatagactatgatattcttcatgttgatattatgtcccaccatagttttattttaatgagcctatatccatataaagcaaatacaagtataaacattacaaaaatagatatttttgctgagatttggtgaggcatattgtaacatcaattatatgaatgtttttcactacagaccaaaatataaacttaccctttttt
gi|41 : CAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TTAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|42 : agCAGTCGTTTTGATTAGTTAAAGAACTATTTGC-AAAG---TAAGTTTGTAGCTGTTTCAAGAGTATTAAGAACTA
gi|43 : agCAGTCGTTTTAATTAATTAAAGAAATATTTGC-AAAG---TAAGTTTGCAGCTGTTTCAGGTGAATTAAGAA
gi|44 : agTTAAAAACACATTTGC-AAAGAAGTAAATCTGTATCTGTTTCAAGTGAATTT-----TAGAGTG
gi|45 : tcgtttcgCTAG-CTTTTGTCTACCAGTTCTATCC----AGGAAGAC-----------TTT--GTC----T----------AATT--TGTTTTACAATCAATGTAAA
gi|46 : TTGATTAAAGAAATATTAGCAAAAG---CAAGTTTGTTGCTGTT--GAGTGAACTTAGAAATAA
gi|47 : tcttGGATCTACCCTCGCAGGGA----TTGAGCTAGATTG--GTTAAGGTTTTA----AAAACT--TGTTT
gi|48 : tTCGTTTTGATTAATTAAATAACTATTTGC-AAAT---TAAGTTTGCAACTGTTTC
gi|49 : agctaGCGTTCACCATATTAGAATGCG---TGATATTTTTATG--TTTGTAAAAC-A-TGAAA
gi|5 : TTTTGATGTGTG--TT-----TGGA-AAAGAGTTA-----GGTAATGAGG--GTGTGTGTGTATAT
gi|50 : aCAGTCGTTTTAGTTAATTAAAGAAATATTTGC-AAAG---TAAGTTTACAGatagcatatatatactaggatattcttcatatcaatatttaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaacacatactaacattacaaataaaatatttgctgaggtttggcacggcatattctaacctatcaatcgccttcaggccgaaatattttcacttagcaaaaataactgaggaaattatacattttaatttaaaaatacaagcatttgtgtaaaatatatgaaactattagtatgtatataaaatatatttaaaagtcagattgatttaacattgaaagttctcaggtacaaatgtccaaatatttccaaccttgtgcctgtacgtatctgagacaggagattgacgattataatattttaataaattctgaatagtggcctgtacatattttgtttcaaacaacttaaacaacattgactttttactgtttcagtcatttaattacgtgttctgtatgtctatatacacttttaaactgaaagggaaataaatatgcctag
gi|51 : agCAGTCGTTATAATCAATTAAAGAAATATTTGC-AAAG---TAAGCTTGCA
gi|53 : agCAGTCGTTTTAATTAATCAAAGAAATATTTGC-AAAG---TAAGTTTa
gi|54 : gATGTGGTGTGTTCT--------------TG-AGCACAAGACACTTTTTCCGCc
gi|6 : CAGTCGTTTTAATTAATTAAAGAAATATTTGT-AAAG---TAAGGTTGCCGCTGTTTCAAGTGAATTTAAAACTAAAGTGAAGCGCGTCGTCCATTGGTAGAGCATCGAATTCAAGATCTGGGGTCGTAGGTTCG-A---TCCACCACGGCTATGTGATGTGTCCT--------------TG-AG--CAAGACACCTTATCTGCCTG-CATA-ATTTACTGGTTCTACCT----AGCAAGATCTCGAGCATGATTT--GTCAAGGTTTTA----AAAACT--TGTTTCACAATCGATGTACAATTTATAATTAAAACAATAGCAACTCATTTTAATTCTAAGCGTTCACCACATTAGAATGCG---GGACAGTA-TAAG--ATTGTGAGAT-A-TGACCTACGAAATAT----AG-G-AAAAGAACAATTTTGTAAACAAGGGGTAT----ATCC-AAAGCAA-CACTATCAACCAAAATAAAATGTAAACC-----CATTACTGTACC----AC----GT-C----GC---GCT-A-AA-A--CGGGTATCCGGGTAT---C----ACATGT------ATCCGTGTTTGGAATCCCTTTACCTGACGC-ATTGAA-AAAA--A-A----TCAGGAATTAAACAACA--ATGTCTGATCTCTCATCCCT-----------A----------T-------TTT
gi|7 : agAACT-ATTTCAATTCTAAGCGTTCACCATATTA-AATGCG---GGACAGTATTGTG--TTTGTAAAAC-A-----ATACGAAATAT----AG-G-AAAAAAACAATTT---------------------------AACAA-CACTACCAG-------------TAAACC------ATTACTGTACC----AC----GTTC----GCCGAGCA-A-AA-A--CTGG---------AT---C----ACATGT------ATCGGTG----------CTTTACCAGACCC------C-----------T--TCATGGATTAAACAACCCTATGTCTGACCCGTTATCCTT-----------A----------T-------TTTA--------------------GTT----TTGTTTCATTGTCTCT-A-----A------TT-TC-TATA------------------TTAAT---A----TATT---T---TGTTGTTGTTT-TTATTT--TA----AGTG-----GGT----------------T---TTTTTAATCTATA--TT-----TATG-GGG-ACGTG-----AGTAATTA----GTGTGTTTGTACAT
gi|8 : gtgCATTTTAATTCGAAGCGTTCACCATATTAGAAAATT---TGACATT-TTGTG--TTTGTAAAATCA-TGAAATACAAAATGT----GG-A-AAAAGTACAATGTTGTAAACAAGGGATAT----ATCCAAAAGTAA-CACGATCAGCCAAAAAACAAGGTAAGTC-----CATTGCTGTACC----ATGTTGGT-T----GC---ACA-T-AT-A--CAGA---------AT---C----ACATGT------ACCGGTGTTTTGAATCCCTTCACCGGACTC-ACTAAT-GAAC--G-ATTAATCATGGATTAAAGAACTCTATGCCTGATCCTTTATCCCT-----------GAATAACAGTCT-------TTTT------------------T-GTT----TTGTTTTAATGTGTTT-A-----ATGACAGTT-TT-TATA------------------TCA-----A----TATT---T---TGTttcatatatatcatttctttatattaatattatgtcaaaactagcataaatatttttttaaatgaccctttatccatataaaacaaatgaaaacatttcaaaaatagattttttttgctgaggtttgaggagacacatt
12 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TATTTGCTGAGGTTTGGGGAAGGGTATTTTTATATGTCCATCTATATTTATTTTTCGCTGCCTGTTTTTTTTTCAACAATGAAATTTCACTGACGAAAATATACATTGTCAAACACAGAGATTTTAAAAATTTAAGTATCAGTTTGTAAAATTGACAGACAATATCAAAGTAGATTTAGAGTCAGATTTACTTCACATAGAAATGTCTCCGGTATCAATCTCCGACTTTTTCAAACTTGTGACAGCTACATGTATTTGAGGCAGGCGATTGACAAAATAGCCTCGTCCAAAACGGTCAAACTGTCACCTACATGTTTTTTGTGTTTCCGACAACTGAATCCGGCATCATTGAATTAGTTGTCGTCTTTTTTTTTTCGATTTCAAACATTTAATTATGTAGTTATGTATACAATGTAAAATAAATAAGGAAAACAC
Unaligned ( gi|22 ): AGTATGTAAATAAAATATGTTTAAGAGTCGGATTAATTTAACATAGAAATTTCTCTGGTACTAATTTCTGCATATTTCTGACCATGTGCCTGCCACACATACCTGAGACAGGAGATTGATGATTGCTAAATTGTAGCCTGAACATATTTTGTTTCAAACAATTGAATCATTGACCTTTTTCTTTTTCAAATTCTGTGTTCTGTATTTCAGTATACATTTTTAAATGGAAAGGGAAAGCACA
Unaligned ( gi|25 ): ATATCACTAACGAAAGCATAATACACTATAACTAAGAGAGATTTTTTTTTAAAAAAATGCAAGCGTTTGCGTATAAATGTAAATAGCCGCGTGTGTGTCAGTGCGTAGAGATTACAAATCATGTTTAAGAGTCGGATTCTCTATAGATAGACATGTCTTCGCTGCTATTTTCCCAAATATTTTTAACGTGTGACTGCGACCCTAAGGATCTGCCTGGAAC
Unaligned ( gi|26 ): TTCTCAGGTATTGATTTCTGAATATTTCCGAGCTGGTGCCAGCGACATGTACCTGGGACAGGAGATTGTAGGTTAGCAGCTTTTAAAATTTCGAATTGTGGCCTATACATATTTTGTTTCCAACAACTGATTCACCCTTGACATTTTTTCTGTTTTAAACGTTTGATTCTATGTTCTGTATTAATTTTTTATATACACTAAAG
Unaligned ( gi|27 ): ACATTTTGACATACAGCAGCATAACTCCATTCTATGTTTGTCGCTACAGGGTACATGTATACGATATAAACCCTACCTATTTTTAATGAAGACAATTTCACTGATGAAACCAAACATTGCCAACTGCAGAGATGCAGAGTATTGTGCAGTATTTTTGGGGTATCAGTAAATTGTTATATTGATGAACAATAATATGTA
Unaligned ( gi|29 ): AACTATCAGTATGTAAATAAAATAGTTGATCATACTAATTGAACATAGACATTTCTTATGAACCTGAGGCAGGAGATTTATGATTAACATATTTTAAAAATATTTTTTGTTGCTAGCAACTGAATTCTCTGTTTTAAACATTTAATTCTATGTTTTATAGTTCTGTATAC
Unaligned ( gi|30 ): CATTTGTATAAATCTAAACATCAAGCAATCAACCTGTTTTCAAGTATAAGTTAAATTCACTTTACATTGAAATTTCTCTGGTACCATCTTCCAAATAACTCTAAACATATGTCTATCTAAAGTAGGAAAGATTGACGATAAACGTATTTTAGCATTTAACTC
Unaligned ( gi|31 ): ATTCAATATCATTTTAAAAAAATGACATTTTCACAACTTTAGAATATCAAAATAGGATTCACAGCCATATTTTCTTTATACAGAAATTCTCATTTCCAAACTGACGACTGCTACATGTACCCGAGTTAACCTATTGACAAACAGCCTCATGAAAC
Unaligned ( gi|34 ): ACTTGCGACTGTGAACCCATTTATAGTCTAAGTGTTCACAGCATGCATACACATTTTGTAAAAATATAAAATACCGGAGAAAAAACACTGTGTAAAGATAAGAGTCAAGGTGCAAGGTAAACCC
Unaligned ( gi|35 ): GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTGTGTGAAGCATATATAGACTATGCTGTATTTCATATTAA
Unaligned ( gi|37 ): AACTTATCATTAACGATGATATTCTAATATATTGTCAAATCAAGAGAAATTTTAAAAATGCATGCGTTTGTTTAAAAGAGGTAAATAACAGCATG
Unaligned ( gi|52 ): NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTCTCATATAAAT