lowQualScore : 111 111111 1 1111111 444444444 22222 1
lowQualScore : 2 666 6 4 555555 777777 555 44444 333 7 0 4 55 22 5 33 2 1111111 33 88888 4 5 33 6666 2 2 666666666 0 22222 55 1
lowQualScore : . ... . . ...... ...... ... ..... ... . . . .. .. . .. . ....... .. ..... . . .. .... . . ......... . ..... .. .
lowQualScore : 5 999 3 0 888888 444444 222 88888 222 4 6 5 44 33 0 22 4 2222222 22 22222 5 7 99 1111 9 9 111111111 2 22222 00 0
consensus : TAATAACACAATATGTAAATTCAT-T-TATA------AGTTAT---A--AAAAA---GAA----TAAT---GGTGTTTCAAAGTGAGAATACAGTCAATCGTAAAATTGAGAGTAAAATCATTATATCG-GT-TANTATG--CAA-T-A-T---TA--T-----ATATATTATGAAATATA-T--T----TAAGTA-GTATTTGA-CCAA-TATT-TAAACAAAATTTGTAT----AAT--ATCAAGTTATACGATTTTTCAAAGCGTTTATAAT
Reference ( gi|4 ) : TAATAACATAGTTTGTAAATTCAT-T-TATA------AGTTAT--TA--AAAAA---GAA----TAAT---GGTGTTTCAAAGTGAGAATACAATCAATCGTAAAACTGAGAGTAAAATCATTATATCG-GT-TAATATG--CAA-T-A-T---TA--T-----ATACATTATGAAATATA-T--T----TAAGTA-GTATTTGA-CATA-TATTATAAACAAAATTTGTAT----TAT--ATCAAGTTATTCGATTTTTCAAAGCGTTTATAAT
gi|9 : TAATAATATTAAATGTAAATTCAT-T-TATA------AGTTAT--TA--AAA-A---GAA----TAAT---GGTGTTTCAAAGTGAGAATACGGTCAATCGTAAAATTGAGAGTAAAATCATTATATCA-AT-TAACATG--CAA-T-A-T---TA--T-----ATATATAATGAAATATA-T--T----TAACTA-GTATTTGA-CCAA-TAT--TAAACAAAATTTGTAT----AAT--A
gi|11 : ttttTAATAACACATTTTCTAAATTCAT-T-TATA------AGTTAT--TA--AAAAA---GGA----TAAT---GGTGTTTCAAAGCGAGAATACAGTCAATCGTAAATTTAAGAGTAAAAGCATTACATTG-AT-AAATATG--CAA-T-A-C---TATTT-----AAATATTATGCAATATA-T--T----TAAGAA-GTTTTTAA-CAag
gi|5 : ttttTAATAACACAATAAGTAAATTCATAT-TCT--------GTGAT--GA--AAAAAA--GAA----TAAC---AGTGTCTTAAATTGAAAAT---------CGTAAAATTACGAGTAAAATCATTATATCG-GT-TATCAAG--AAA-T-A-C---CA--TT----ATATATTATGAAATATA-T--T----CA--TAAGTATTTGA-C-TA--GTTTTAGGCACAATTTGTAT----AAT--ATCAAGTTATTCCATTTTTCATAGCGTTTATAa
gi|15 : ttttTAATAACATAATATGTAAATTCAT-T-TATA------AGTTAT--CA--AAAAA---GAATAATTAAT---GGTGTTTCAAAGCGAGAATACAGTCAATCATAAAATTG
gi|22 : tttTAATAACACAATATGTAAATTCAT-T-TATA------AGTAAC---A--AAAAA---GAA----TAATCATGGTGATTTAAATTGAAAATACAGTAAACCGTAAAATTGAGAGTAAAcatacatatgtttataaaaaacaaggtaccggtatattac
gi|3 : ttttAATAACACAATATGTAAGTTCAT-T-TATA------AGTTAT--AA--AAAAAAAAGAA----TAAT---TGTGTTTCAAAGTGAGGATACAGTCAAT--------TGAGAGTAAAATCATTATATCA-GT-TATCATG--CAA-T-A-G---TA--T-----ATATATTATGAAATATA-T--T----TAAGAA-GTATTTGA-CCAA-TATTA-AAAAAAAA--TGTAT----ACT--ATCAAGCTATATGTTTTTTCAATGCGTTTATAAT
gi|2 : ttttttaaAATATCACAATATGTTGATTCAT-T-TATA------AGTTAT--AG--AAAAT---GAA----AAAT---GATGTTTTAAAGTGAAAATACATTCAATCCTACAGATGAGAGTAAAATCATTATATCG-AT-TATTATG--AAA-T-AGTATATA--T-----ATATATTATGAAATAGA-T--G----CAAGTA-GTATTTGA-C-CA-GTTTTTAAACGAAATGTGTAT----AAT--AGTAAGTTGTATGATTTTTCAAAGCGCTTATaa
gi|10 : ctttaAATAACACAATATGTAAATTCAT-T-TATA------AGTTAT--AA--AAAAA---GAA----TAAT---AGTGTTTCAA-----------------TCACAAAATTAAGAGTAAAATCATTATATCT-GT-TAACATG--CTA-T-A-T---AA--T-----ATATATTATGAAATATA-T--A----CAAGTA-GTATTTGA-CCGG-TAT--TAAACTAAATTTGTAT----AAT--ATC----------ATTTTTCAAAGCGT
gi|6 : tctttaAAAAATACAATATGTAAGTTAAT-T-TATA------GGTTAT------AAAAA---GAA----TAAT---GATTTTTTAAAGTGAAAACACAGTCAATAATAAAATTAAGAGTAAAACCATGATATCA-GT-TACTA----------------TA--T-----ATGCATTATGAAATATATT--T----TAAGTA-GTATTTTA-CCAG-TAT--TAAACAAAATTTGTAT----AAT--ACCAAGTTATATGATTTTT-AAAGC
gi|20 : ttaAATATCACAATATGTAAATTCAT-T-TA------------------------A---GAA----TAAT---GGTGTTTCAA-GTGAGAATA-AGTTAATCGTAAAATTGAGTGTAAAATCAACATATCG-GT-TAATACG--CAA-T-A-T---TA--T-----ATATAT
gi|17 : tgaAATTACACAAT--ATAATTTCTT-T-CAAA------TGCTAT------AAAAT---GAA----TAAT---GGTGTTTCAAAGTGATAGTTCAGTCAATCGTAAAATTAAGAGTAGAACCAATATA
gi|23 : tttaaataacacaatatgttttaAATAACACAATACGTAAATTCAT-T-TGTA------AGTTA---TA--AAAAA---GCA----TAAT---GGTGTTTTAAAg
gi|1 : ttttttaaaaATAACATTATATGTACATTCAT-A-TATACATGTAAGTTAT--CA--AAAAA---GGA----CAAT---GGTGTTTTAAAGTGAGAATACAGTAAATCGTACAATTGATAGTAAAATCATTATATCG-GT-CAATATG--CAA-T-G-T---TA--TATATAATATATTGTGAAATATA-TAATATTATAAGTA-GTATTTGA-CCAA-TAT--TAAACAAAAATTGTAT----AGT--ATCAAGTCATACGATTTTTCAAAGCATTcaaagacaattttatcgaattta
gi|12 : ttttacATAACACAGTATACTAATGCAT-T-TATA------AGTTATAATAACAAAAA---GAG----AGAT---ATTGT---ACAGTGAAAATACAGGCACTTATCAAAAT--GGGTAAAATCATTACACCA-GT-TGCTA----CA----------TA--T-----ATGC--TATAAAATATA----T----TACATA-GTACTTGA-AAAG-TACTA-AAATAAAaa
gi|18 : tatagTAACACAATATGTTAATTCATATATATA------ACGGAT--GA--AAAGA---GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTCGTAAAAAT--GAGTGAACTCCTTATATT-------ATTTG--CAA-TAA-T---TA--T-----AT
gi|19 : cattTAACACAATATGTTAATTCATATATATA------ACGGAT--GA--AAAGA---GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTCGTAAAAAT--GAGTGAACTCCTTATATT-------ATTTG--CAA-TAA-T---TA--T-----A
gi|7 : cattAACATA-TATGTATACTCAT-T-TGAA------AATTAT-------AAAA---GAA----TAAT---GGTATTTTAAAGTGGAAATACAGTCAATCTTTATAAT--GATTAAAATCAGTATA--GTAT-TACCGTGATCAACT-G-C---TA--T-----AT---TT----GAT----T--T----TAAGTA-GTATTCGA-C-TAGTGT--TAAACA-----CG--------------CAAAATATTCGA-TTTTCAAAGCATTAATAAT
gi|14 : tttaaataacacaaTGTATATTCAT-T-T-----------TTAT------GAAAA---GAA----GAAT---GGTATTTTAAAGTGAAAATACAGC-----------------------TCATTATACCA-GC------TG--C---T---T---TA--T-----TTATATCAT--AATATAGT--T----T---TA-GTATTTTATCA-G-TAT--TAAAC--AATTTGTGTATAGTATCAACCAAATTATACGATTTTa
gi|13 : caataTCAT-C-TAT---------TTGT--TA--TAAAC---AAA----TAAT---GGTGTTTTAAAGTGAGAATACAGTCAATAGTAAAATTGAGA---ACATCATTATATCG-GT-TGTTATG--CAA-T-A-G---TA--T-----ATATGTTATGAAATATA-T--T----TAAGTA-GTATCTGA-CCAA-TATT-T-AACAAAATTTGAAT----ACT--ATCAAG
gi|21 : -TGTA------AGTTAT---A--AAAAA---GA-----CAA----GGTGTTTTAAAGTGAAAACACCGTCAATTATAAAA-TGAGAGTAAAATC-TAATATTA-GTATAA
gi|16 : cT--TA--AAAAA----AA----TAAT---GGTGTGTCAAAGTGAGAATACAGTCAATCGTAGAATTGAGAATAAAATCATTATATCA-GT-AGTTATG--TAA-T-A-C---TT--T-----ATATATTATGAAATATA-T--T----GAAGAA-GCATTTTA-Cacattttttaaaaacatttt
gi|8 : AT---GGTGTTTCTAAGTGAGAATACAGTCAATCGTAAAATTGAGAGTAGAATCATTATATCG-GT-TATCATA--CAA-T-A-G---TG--T-----ATATATTATGAAATATA-T--T----TAAGTT-GTATTTGA-CCAA-TAT--TAAACAAAATTTGAAT----AAT--ATAATGTTATACGATTTTTCAAAcaa
Alignments
lowQualScore : 1
lowQualScore : 555555 5 3 555555 99 1 88888888 0 333 3333 1 1 1 2 22 1 222 2 6666666 33 77777 5 33 5555 2 4 3 7777 1
lowQualScore : ...... . . ...... .. . ........ . ... .... . . . . .. . ... . ....... .. ..... . .. .... . . . .... .
lowQualScore : 888888 7 6 222222 88 7 22222222 8 000 7777 8 8 6 9 44 0 999 1 8888888 11 88888 3 77 7777 7 8 1 7777 0
consensus : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAGTATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
Reference ( family-1600 ) : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAATATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
gi|1 : ATAACATTA------TATGTACATTCAT-A-TATACATGTAAGTTATC-AA-AA-A-A----GGACA---AT----GGTGTTTTAAAGTGAGAATACAGTAAATC-GT-ACAATTGATAGTAAAATCATTATATCG-GTCAATATG--CAA-T-G---T-TA--TATATAATATATTGTGAAATATA-TAATATTATA-AGTAGTATTTGACCAATA-T-TAAACAAAAATTGTATAGTAT----CAAGTCATACGATTTTTCAAAGCATT
gi|10 : ttttacAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-AA---GAATA---AT----AGTGTTTCAA-----------------TC-AC-AAAATTAAGAGTAAAATCATTATATCT-GTTAACATG--CTA-T-A---T-AA--T-----ATATATTATGAAATATA-T--A----CA-AGTAGTATTTGACCGGTA-T-TAAACTAAATTTGTATAATAT----C----------ATTTTTCAAAGCGTaa
gi|11 : tctttaTAATAACACAT------TTTCTAAATTCAT-T-TATA------AGTTATT-AA-AA-A-A----GGATA---AT----GGTGTTTCAAAGCGAGAATACAGTCAATC-GT-AAATTTAAGAGTAAAAGCATTACATTG-ATAAATATG--CAA-T-A---C-TATTT-----AAATATTATGCAATATA-T--T----TA-AGAAGTTTTTAAC
gi|12 : ttttATAACACAG------TATACTAATGCAT-T-TATA------AGTTAT--AATAACA-A----AAAGA---GA----GATATTGTACAGTGAAAATACAGGCACTT-ATCAAAAT---GGGTAAAATCATTACACCA-GTTGCTA----------------CA--T-----ATATGCTATAAAATATA----T----TA-CATAGTACTTGAAAAGTACT-AAAATAAAaa
gi|13 : tatagTCAT-C-TATT------TGTTAT--AA-AC-A-A------ATA---AT----GGTGTTTTAAAGTGAGAATACAGTCAATA-GT-AAAATTGAGA---ACATCATTATATCG-GTTGTTATG--CAA-T-A---G-TA--T-----ATATGTTATGAAATATA-T--T----TA-AGTAGTATCTGACCAATATT-T-AACAAAATTTGAATACTAT----CAAG
gi|14 : CAA------TATGTATATTCAT-T-T-----------TTAT--GA-AA-A------GAAGA---AT----GGTATTTTAAAGTGAAAATACAGC-------------------------TCATTATACCA-GCTGCT---------------T-TA--T-----TTATATCAT--AATATAGT--T----T----TAGTATTTTATCAGTATT--AAACAATTTGTGTATAGTATCAACCAAATTATACGATTTT
gi|15 : TAATAACATAA------TATGTAAATTCAT-T-TATA------AGTTATC-AA-AA-A-A----GAATA---ATTAATGGTGTTTCAAAGCGAGAATACAGTCAATC-AT-AAAATTG
gi|16 : tttA-AA-A-A----AAATA---AT----GGTGTGTCAAAGTGAGAATACAGTCAATC-GT-AGAATTGAGAATAAAATCATTATATCA-GTAGTTATG--TAA-T-A---C-TT--T-----ATATATTATGAAATATA-T--T----GA-AGAAGCATTTTACCAAcatacatatgtttataaaaaacaaggtaccggtatattac
gi|17 : ttAATTACACAA------TAT--AATTTCTT-T-CAAA------TGCTAT--AA-AA-T------GAATA---AT----GGTGTTTCAAAGTGATAGTTCAGTCAATC-GT-AAAATTAAGAGTAGAACCAATATA
gi|18 : tttaaataacacaatatgttttaTAACACAA------TATGTTAATTCATATATATA------ACGGAT--GA-AA-AGA----GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTC-GT-AAAAAT--GAGTGAACTCCTTATA-----TTATT-TG--CAA-TAA---T-TA--T-----ATg
gi|19 : cattTAACACAA------TATGTTAATTCATATATATA------ACGGAT--GA-AA-AGA----GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTC-GT-AAAAAT--GAGTGAACTCCTTATA-----TTATT-TG--CAA-TAA---T-TA--T-----A
gi|2 : cattAATATCACAA------TATGTTGATTCAT-T-TATA------AGTTAT--AG-AA-A-AT---GAAAA---AT----GATGTTTTAAAGTGAAAATACATTCAATC-CT-ACAGATGAGAGTAAAATCATTATATCG-ATTATTATG--AAA-T-AGTATATA--T-----ATATATTATGAAATAGA-T--G----CA-AGTAGTATTTGACCAGTTTT-TAAACGAAATGTGTATAATAG----TAAGTTGTATGATTTTTCAAAGCGCTTAT
gi|20 : ctttaAATATCACAA------TATGTAAATTCAT-T-TA------------------------A----GAATA---AT----GGTGTTTCAA-GTGAGAATA-AGTTAATC-GT-AAAATTGAGTGTAAAATCAACATATCG-GTTAATACG--CAA-T-A---T-TA--T-----ATATAT
gi|21 : tga-TGTA------AGTTAT--AA-AA-A-A----GA-CA---A-----GGTGTTTTAAAGTGAAAACACCGTCAATT-AT-AAAA-TGAGAGTAAAATC-TAATA-----TTAGTATA---AA-C-A---T-T
gi|22 : cTAATAACACAA------TATGTAAATTCAT-T-TATA------AGTAAC--AA-AA-A-A----GAATAATCAT----GGTGATTTAAATTGAAAATACAGTAAACC-GT-AAAATTGAGAGTAAAttttaaaaacatttt
gi|23 : ttttAATAACACAA------TACGTAAATTCAT-T-TGTA------AGTTAT--AA-AA-A-A----GCATA---AT----GGTGTTTTAAA
gi|3 : ttttttaaaaAATAACACAA------TATGTAAGTTCAT-T-TATA------AGTTAT--AA-AA-A-AAAAAGAATA---AT----TGTGTTTCAAAGTGAGGATACAGTCAAT----------TGAGAGTAAAATCATTATATCA-GTTATCATG--CAA-T-A---G-TA--T-----ATATATTATGAAATATA-T--T----TA-AGAAGTATTTGACCAATATT-AAAAAAAAA--TGTATACTAT----CAAGCTATATGTTTTTTCAATGCGTTTATAATcaaagacaattttatcgaattta
gi|4 : ttttttaaTAATAACATAG------TTTGTAAATTCAT-T-TATA------AGTTATT-AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAATCAATC-GT-AAAACTGAGAGTAAAATCATTATATCG-GTTAATATG--CAA-T-A---T-TA--T-----ATACATTATGAAATATA-T--T----TA-AGTAGTATTTGACATATATTATAAACAAAATTTGTATTATAT----CAAGTTATTCGATTTTTCAAAGCGTTTATAATaa
gi|5 : TAATAACACAA------TAAGTAAATTCATAT-TCT--------GTGATGAAA-AA-A-A----GAATA---AC----AGTGTCTTAAATTGAAAAT---------C-GT-AAAATTACGAGTAAAATCATTATATCG-GTTATCAAG--AAA-T-A---C-CA--TT----ATATATTATGAAATATA-T--T----CATA--AGTATTTGACTAGT-TT-TAGGCACAATTTGTATAATAT----CAAGTTATTCCATTTTTCATAGCGTTTATA
gi|6 : ttttAAAAATACAA------TATGTAAGTTAAT-T-TATA------GGTTAT--AA-AA---A----GAATA---AT----GATTTTTTAAAGTGAAAACACAGTCAATA-AT-AAAATTAAGAGTAAAACCATGATATCA-GTTACTA----------------TA--T-----ATGCATTATGAAATATATT--T----TA-AGTAGTATTTTACCAGTA-T-TAAACAAAATTTGTATAATAC----CAAGTTATATGATTTTT-AAAGC
gi|7 : ttaAATAACACAAAACATATATGTATACTCAT-T-TGAA------AATTAT--AA-AA--------GAATA---AT----GGTATTTTAAAGTGGAAATACAGTCAATCTTT-ATAAT---GATTAAAATCAGTATA--GTATTACCGTGATCAACT-G---C-TA--T-----AT---TT----GAT----T--T----TA-AGTAGTATTCGACTAGTG-T-TAAACA-----CGCAAAATAT----T--------CGA-TTTTCAAAGCATTAATAAT
gi|8 : tttaAATATCACAA------AATATAAATTTAT-T-T----------GTTAT-----------------------------GGTGTTTCTAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAGAATCATTATATCG-GTTATCATA--CAA-T-A---G-TG--T-----ATATATTATGAAATATA-T--T----TA-AGTTGTATTTGACCAATA-T-TAAACAAAATTTGAATAATAT----AATGTTATACGATTTTTCAAAa
gi|9 : ttttaaTAATAATATTA------AATGTAAATTCAT-T-TATA------AGTTAT--TA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACGGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCA-ATTAACATG--CAA-T-A---T-TA--T-----ATATATAATGAAATATA-T--T----TA-ACTAGTATTTGACCAATA-T-TAAACAAAATTTGTATAATAa
Alignments
lowQualScore : 1
lowQualScore : 555555 5 3 555555 99 1 88888888 0 333 3333 1 1 1 2 22 1 222 2 6666666 33 77777 5 33 5555 2 4 3 7777 1
lowQualScore : ...... . . ...... .. . ........ . ... .... . . . . .. . ... . ....... .. ..... . .. .... . . . .... .
lowQualScore : 888888 7 6 222222 88 7 22222222 8 000 7777 8 8 6 9 44 0 999 1 8888888 11 88888 3 77 7777 7 8 1 7777 0
consensus : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAGTATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
Reference ( family-1600 ) : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAGTATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
gi|1 : ATAACATTA------TATGTACATTCAT-A-TATACATGTAAGTTATC-AA-AA-A-A----GGACA---AT----GGTGTTTTAAAGTGAGAATACAGTAAATC-GT-ACAATTGATAGTAAAATCATTATATCG-GTCAATATG--CAA-T-G---T-TA--TATATAATATATTGTGAAATATA-TAATATTATA-AGTAGTATTTGACCAATA-T-TAAACAAAAATTGTATAGTAT----CAAGTCATACGATTTTTCAAAGCATT
gi|10 : ttttacAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-AA---GAATA---AT----AGTGTTTCAA-----------------TC-AC-AAAATTAAGAGTAAAATCATTATATCT-GTTAACATG--CTA-T-A---T-AA--T-----ATATATTATGAAATATA-T--A----CA-AGTAGTATTTGACCGGTA-T-TAAACTAAATTTGTATAATAT----C----------ATTTTTCAAAGCGTaa
gi|11 : tctttaTAATAACACAT------TTTCTAAATTCAT-T-TATA------AGTTATT-AA-AA-A-A----GGATA---AT----GGTGTTTCAAAGCGAGAATACAGTCAATC-GT-AAATTTAAGAGTAAAAGCATTACATTG-ATAAATATG--CAA-T-A---C-TATTT-----AAATATTATGCAATATA-T--T----TA-AGAAGTTTTTAAC
gi|12 : ttttATAACACAG------TATACTAATGCAT-T-TATA------AGTTAT--AATAACA-A----AAAGA---GA----GATATTGTACAGTGAAAATACAGGCACTT-ATCAAAAT---GGGTAAAATCATTACACCA-GTTGCTA----------------CA--T-----ATATGCTATAAAATATA----T----TA-CATAGTACTTGAAAAGTACT-AAAATAAAaa
gi|13 : tatagTCAT-C-TATT------TGTTAT--AA-AC-A-A------ATA---AT----GGTGTTTTAAAGTGAGAATACAGTCAATA-GT-AAAATTGAGA---ACATCATTATATCG-GTTGTTATG--CAA-T-A---G-TA--T-----ATATGTTATGAAATATA-T--T----TA-AGTAGTATCTGACCAATATT-T-AACAAAATTTGAATACTAT----CAAG
gi|14 : CAA------TATGTATATTCAT-T-T-----------TTAT--GA-AA-A------GAAGA---AT----GGTATTTTAAAGTGAAAATACAGC-------------------------TCATTATACCA-GCTGCT---------------T-TA--T-----TTATATCAT--AATATAGT--T----T----TAGTATTTTATCAGTATT--AAACAATTTGTGTATAGTATCAACCAAATTATACGATTTT
gi|15 : TAATAACATAA------TATGTAAATTCAT-T-TATA------AGTTATC-AA-AA-A-A----GAATA---ATTAATGGTGTTTCAAAGCGAGAATACAGTCAATC-AT-AAAATTG
gi|16 : tttA-AA-A-A----AAATA---AT----GGTGTGTCAAAGTGAGAATACAGTCAATC-GT-AGAATTGAGAATAAAATCATTATATCA-GTAGTTATG--TAA-T-A---C-TT--T-----ATATATTATGAAATATA-T--T----GA-AGAAGCATTTTACCAcatacatatgtttataaaaaacaaggtaccggtatattac
gi|17 : ttAATTACACAA------TAT--AATTTCTT-T-CAAA------TGCTAT--AA-AA-T------GAATA---AT----GGTGTTTCAAAGTGATAGTTCAGTCAATC-GT-AAAATTAAGAGTAGAACCAATATAa
gi|18 : tttaaataacacaatatgttttaTAACACAA------TATGTTAATTCATATATATA------ACGGAT--GA-AA-AGA----GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTC-GT-AAAAAT--GAGTGAACTCCTTATA-----TTATT-TG--CAA-TAA---T-TA--T-----ATg
gi|19 : cattTAACACAA------TATGTTAATTCATATATATA------ACGGAT--GA-AA-AGA----GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTC-GT-AAAAAT--GAGTGAACTCCTTATA-----TTATT-TG--CAA-TAA---T-TA--T-----A
gi|2 : cattAATATCACAA------TATGTTGATTCAT-T-TATA------AGTTAT--AG-AA-A-AT---GAAAA---AT----GATGTTTTAAAGTGAAAATACATTCAATC-CT-ACAGATGAGAGTAAAATCATTATATCG-ATTATTATG--AAA-T-AGTATATA--T-----ATATATTATGAAATAGA-T--G----CA-AGTAGTATTTGACCAGTTTT-TAAACGAAATGTGTATAATAG----TAAGTTGTATGATTTTTCAAAGCGCTTAT
gi|20 : ctttaAATATCACAA------TATGTAAATTCAT-T-TA------------------------A----GAATA---AT----GGTGTTTCAA-GTGAGAATA-AGTTAATC-GT-AAAATTGAGTGTAAAATCAACATATCG-GTTAATACG--CAA-T-A---T-TA--T-----ATATAT
gi|21 : tga-TGTA------AGTTAT--AA-AA-A-A----GA-CA---A-----GGTGTTTTAAAGTGAAAACACCGTCAATT-AT-AAAA-TGAGAGTAAAATC-TAATA-----TTAGTATA---AA-C-A---T-T
gi|22 : cTAATAACACAA------TATGTAAATTCAT-T-TATA------AGTAAC--AA-AA-A-A----GAATAATCAT----GGTGATTTAAATTGAAAATACAGTAAACC-GT-AAAATTGAGAGTAAAttttaaaaacatttt
gi|23 : ttttAATAACACAA------TACGTAAATTCAT-T-TGTA------AGTTAT--AA-AA-A-A----GCATA---AT----GGTGTTTTAAA
gi|3 : ttttttaaaaAATAACACAA------TATGTAAGTTCAT-T-TATA------AGTTAT--AA-AA-A-AAAAAGAATA---AT----TGTGTTTCAAAGTGAGGATACAGTCAAT----------TGAGAGTAAAATCATTATATCA-GTTATCATG--CAA-T-A---G-TA--T-----ATATATTATGAAATATA-T--T----TA-AGAAGTATTTGACCAATATT-AAAAAAAAA--TGTATACTAT----CAAGCTATATGTTTTTTCAATGCGTTTATAATcaaagacaattttatcgaattta
gi|4 : ttttttaaTAATAACATAG------TTTGTAAATTCAT-T-TATA------AGTTATT-AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAATCAATC-GT-AAAACTGAGAGTAAAATCATTATATCG-GTTAATATG--CAA-T-A---T-TA--T-----ATACATTATGAAATATA-T--T----TA-AGTAGTATTTGACATATATTATAAACAAAATTTGTATTATAT----CAAGTTATTCGATTTTTCAAAGCGTTTATAATaa
gi|5 : TAATAACACAA------TAAGTAAATTCATAT-TCT--------GTGATGAAA-AA-A-A----GAATA---AC----AGTGTCTTAAATTGAAAAT---------C-GT-AAAATTACGAGTAAAATCATTATATCG-GTTATCAAG--AAA-T-A---C-CA--TT----ATATATTATGAAATATA-T--T----CATA--AGTATTTGACTAGT-TT-TAGGCACAATTTGTATAATAT----CAAGTTATTCCATTTTTCATAGCGTTTATA
gi|6 : ttttAAAAATACAA------TATGTAAGTTAAT-T-TATA------GGTTAT--AA-AA---A----GAATA---AT----GATTTTTTAAAGTGAAAACACAGTCAATA-AT-AAAATTAAGAGTAAAACCATGATATCA-GTTACTA----------------TA--T-----ATGCATTATGAAATATATT--T----TA-AGTAGTATTTTACCAGTA-T-TAAACAAAATTTGTATAATAC----CAAGTTATATGATTTTT-AAAGC
gi|7 : ttaAATAACACAAAACATATATGTATACTCAT-T-TGAA------AATTAT--AA-AA--------GAATA---AT----GGTATTTTAAAGTGGAAATACAGTCAATCTTT-ATAAT---GATTAAAATCAGTATA--GTATTACCGTGATCAACT-G---C-TA--T-----AT---TT----GAT----T--T----TA-AGTAGTATTCGACTAGTG-T-TAAACA-----CGCAAAATAT----T--------CGA-TTTTCAAAGCATTAATAAT
gi|8 : tttaAATATCACAA------AATATAAATTTAT-T-T----------GTTAT-----------------------------GGTGTTTCTAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAGAATCATTATATCG-GTTATCATA--CAA-T-A---G-TG--T-----ATATATTATGAAATATA-T--T----TA-AGTTGTATTTGACCAATA-T-TAAACAAAATTTGAATAATAT----AATGTTATACGATTTTTCAAAa
gi|9 : ttttaaTAATAATATTA------AATGTAAATTCAT-T-TATA------AGTTAT--TA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACGGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCA-ATTAACATG--CAA-T-A---T-TA--T-----ATATATAATGAAATATA-T--T----TA-ACTAGTATTTGACCAATA-T-TAAACAAAATTTGTATAATAa
blockSeqs : AACATA A A . GA T AAAAAA ATC TAAT T C A T GT A ATC C AGTATA TT T G . . T C A CAAC A
blockSeqs : . A A . T . AAA . . . . A T T A C . AAT . . T . . . T . . A
blockSeqs : . A . . C . CAA . . . . G C G C C . AAT . . . . . . T . . A
blockSeqs : . . . . T . AGA . . . . G T A T C . AT . . . . . . T . . T
blockSeqs : . . . . . . AGA . . . . G C G C T . AC . . . . . . T . . T
blockSeqs : . . . . . . AAT . . . . A T A T C . AG . . . . . . T . . A
blockSeqs : . . . . . . AA . . . . G T A T C . AC . . . . . . T . . A
blockSeqs : . . . . . . AA . . . . G T G T A . AT . . . . . . . . . .
blockSeqs : . . . . . . AA . . . . G T G T C . AT . . . . . . . . . .
blockSeqs : . . . . . . AA . . . . G T A A C . AG . . . . . . . . .
blockSeqs : . . . . . . AA . . . . G T G G C . AT . . . . . . . .
blockSeqs : . . . . . . AA . . . . G T G T A . AC . . . . . . . .
blockSeqs : . . . . . . AA . . . . A T A A C . GC . . . . . .
blockSeqs : . . . . . . AA . . . . A T G T C . AG . . . . . .
blockSeqs : . . . . . . AA . . . . G . A C . . AT . .
blockSeqs : . . . . . . AA . . . . G . . C . . T . .
blockSeqs : . . . . . . A . . . . . . . T . . . . .
blockSeqs : . . . . . . T . . . . . . . A . . .
blockSeqs : . . . . . . A . . . . .
blockSeqs : . . . . . A . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ****** ** ***** ** ****
originalCons : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAGTATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
finalCons : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAGTATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
Alignments
lowQualScore : 1
lowQualScore : 555555 5 3 555555 99 1 88888888 0 333 3333 1 1 1 2 22 1 222 2 6666666 33 77777 5 33 5555 2 4 3 7777 1
lowQualScore : ...... . . ...... .. . ........ . ... .... . . . . .. . ... . ....... .. ..... . .. .... . . . .... .
lowQualScore : 888888 7 6 222222 88 7 22222222 8 000 7777 8 8 6 9 44 0 999 1 8888888 11 88888 3 77 7777 7 8 1 7777 0
consensus : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAGTATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
Reference ( family-1600 ) : TAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCG-GTTANTATG--CAA-T-A---T-TA--T-----ATATATTATGAAATATA-T--T----TA-AGTAGTATTTGACCAGTATT-TAAACAAAATTTGTATAATAT----CAAGTTATACGATTTTTCAAAGCGTTTATAAT
gi|1 : ATAACATTA------TATGTACATTCAT-A-TATACATGTAAGTTATC-AA-AA-A-A----GGACA---AT----GGTGTTTTAAAGTGAGAATACAGTAAATC-GT-ACAATTGATAGTAAAATCATTATATCG-GTCAATATG--CAA-T-G---T-TA--TATATAATATATTGTGAAATATA-TAATATTATA-AGTAGTATTTGACCAATA-T-TAAACAAAAATTGTATAGTAT----CAAGTCATACGATTTTTCAAAGCATT
gi|10 : ttttacAATAACACAA------TATGTAAATTCAT-T-TATA------AGTTAT--AA-AA-A-AA---GAATA---AT----AGTGTTTCAA-----------------TC-AC-AAAATTAAGAGTAAAATCATTATATCT-GTTAACATG--CTA-T-A---T-AA--T-----ATATATTATGAAATATA-T--A----CA-AGTAGTATTTGACCGGTA-T-TAAACTAAATTTGTATAATAT----C----------ATTTTTCAAAGCGTaa
gi|11 : tctttaTAATAACACAT------TTTCTAAATTCAT-T-TATA------AGTTATT-AA-AA-A-A----GGATA---AT----GGTGTTTCAAAGCGAGAATACAGTCAATC-GT-AAATTTAAGAGTAAAAGCATTACATTG-ATAAATATG--CAA-T-A---C-TATTT-----AAATATTATGCAATATA-T--T----TA-AGAAGTTTTTAAC
gi|12 : ttttATAACACAG------TATACTAATGCAT-T-TATA------AGTTAT--AATAACA-A----AAAGA---GA----GATATTGTACAGTGAAAATACAGGCACTT-ATCAAAAT---GGGTAAAATCATTACACCA-GTTGCTA----------------CA--T-----ATATGCTATAAAATATA----T----TA-CATAGTACTTGAAAAGTACT-AAAATAAAaa
gi|13 : tatagTCAT-C-TATT------TGTTAT--AA-AC-A-A------ATA---AT----GGTGTTTTAAAGTGAGAATACAGTCAATA-GT-AAAATTGAGA---ACATCATTATATCG-GTTGTTATG--CAA-T-A---G-TA--T-----ATATGTTATGAAATATA-T--T----TA-AGTAGTATCTGACCAATATT-T-AACAAAATTTGAATACTAT----CAAG
gi|14 : CAA------TATGTATATTCAT-T-T-----------TTAT--GA-AA-A------GAAGA---AT----GGTATTTTAAAGTGAAAATACAGC-------------------------TCATTATACCA-GCTGCT---------------T-TA--T-----TTATATCAT--AATATAGT--T----T----TAGTATTTTATCAGTATT--AAACAATTTGTGTATAGTATCAACCAAATTATACGATTTT
gi|15 : TAATAACATAA------TATGTAAATTCAT-T-TATA------AGTTATC-AA-AA-A-A----GAATA---ATTAATGGTGTTTCAAAGCGAGAATACAGTCAATC-AT-AAAATTG
gi|16 : tttA-AA-A-A----AAATA---AT----GGTGTGTCAAAGTGAGAATACAGTCAATC-GT-AGAATTGAGAATAAAATCATTATATCA-GTAGTTATG--TAA-T-A---C-TT--T-----ATATATTATGAAATATA-T--T----GA-AGAAGCATTTTACCAcatacatatgtttataaaaaacaaggtaccggtatattac
gi|17 : ttAATTACACAA------TAT--AATTTCTT-T-CAAA------TGCTAT--AA-AA-T------GAATA---AT----GGTGTTTCAAAGTGATAGTTCAGTCAATC-GT-AAAATTAAGAGTAGAACCAATATAa
gi|18 : tttaaataacacaatatgttttaTAACACAA------TATGTTAATTCATATATATA------ACGGAT--GA-AA-AGA----GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTC-GT-AAAAAT--GAGTGAACTCCTTATA-----TTATT-TG--CAA-TAA---T-TA--T-----ATg
gi|19 : cattTAACACAA------TATGTTAATTCATATATATA------ACGGAT--GA-AA-AGA----GAA-----------GGTGTTATAAAGTGAAATTACAGTCAGTC-GT-AAAAAT--GAGTGAACTCCTTATA-----TTATT-TG--CAA-TAA---T-TA--T-----A
gi|2 : cattAATATCACAA------TATGTTGATTCAT-T-TATA------AGTTAT--AG-AA-A-AT---GAAAA---AT----GATGTTTTAAAGTGAAAATACATTCAATC-CT-ACAGATGAGAGTAAAATCATTATATCG-ATTATTATG--AAA-T-AGTATATA--T-----ATATATTATGAAATAGA-T--G----CA-AGTAGTATTTGACCAGTTTT-TAAACGAAATGTGTATAATAG----TAAGTTGTATGATTTTTCAAAGCGCTTAT
gi|20 : ctttaAATATCACAA------TATGTAAATTCAT-T-TA------------------------A----GAATA---AT----GGTGTTTCAA-GTGAGAATA-AGTTAATC-GT-AAAATTGAGTGTAAAATCAACATATCG-GTTAATACG--CAA-T-A---T-TA--T-----ATATAT
gi|21 : tga-TGTA------AGTTAT--AA-AA-A-A----GA-CA---A-----GGTGTTTTAAAGTGAAAACACCGTCAATT-AT-AAAA-TGAGAGTAAAATC-TAATA-----TTAGTATA---AA-C-A---T-T
gi|22 : cTAATAACACAA------TATGTAAATTCAT-T-TATA------AGTAAC--AA-AA-A-A----GAATAATCAT----GGTGATTTAAATTGAAAATACAGTAAACC-GT-AAAATTGAGAGTAAAttttaaaaacatttt
gi|23 : ttttAATAACACAA------TACGTAAATTCAT-T-TGTA------AGTTAT--AA-AA-A-A----GCATA---AT----GGTGTTTTAAA
gi|3 : ttttttaaaaAATAACACAA------TATGTAAGTTCAT-T-TATA------AGTTAT--AA-AA-A-AAAAAGAATA---AT----TGTGTTTCAAAGTGAGGATACAGTCAAT----------TGAGAGTAAAATCATTATATCA-GTTATCATG--CAA-T-A---G-TA--T-----ATATATTATGAAATATA-T--T----TA-AGAAGTATTTGACCAATATT-AAAAAAAAA--TGTATACTAT----CAAGCTATATGTTTTTTCAATGCGTTTATAATcaaagacaattttatcgaattta
gi|4 : ttttttaaTAATAACATAG------TTTGTAAATTCAT-T-TATA------AGTTATT-AA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACAATCAATC-GT-AAAACTGAGAGTAAAATCATTATATCG-GTTAATATG--CAA-T-A---T-TA--T-----ATACATTATGAAATATA-T--T----TA-AGTAGTATTTGACATATATTATAAACAAAATTTGTATTATAT----CAAGTTATTCGATTTTTCAAAGCGTTTATAATaa
gi|5 : TAATAACACAA------TAAGTAAATTCATAT-TCT--------GTGATGAAA-AA-A-A----GAATA---AC----AGTGTCTTAAATTGAAAAT---------C-GT-AAAATTACGAGTAAAATCATTATATCG-GTTATCAAG--AAA-T-A---C-CA--TT----ATATATTATGAAATATA-T--T----CATA--AGTATTTGACTAGT-TT-TAGGCACAATTTGTATAATAT----CAAGTTATTCCATTTTTCATAGCGTTTATA
gi|6 : ttttAAAAATACAA------TATGTAAGTTAAT-T-TATA------GGTTAT--AA-AA---A----GAATA---AT----GATTTTTTAAAGTGAAAACACAGTCAATA-AT-AAAATTAAGAGTAAAACCATGATATCA-GTTACTA----------------TA--T-----ATGCATTATGAAATATATT--T----TA-AGTAGTATTTTACCAGTA-T-TAAACAAAATTTGTATAATAC----CAAGTTATATGATTTTT-AAAGC
gi|7 : ttaAATAACACAAAACATATATGTATACTCAT-T-TGAA------AATTAT--AA-AA--------GAATA---AT----GGTATTTTAAAGTGGAAATACAGTCAATCTTT-ATAAT---GATTAAAATCAGTATA--GTATTACCGTGATCAACT-G---C-TA--T-----AT---TT----GAT----T--T----TA-AGTAGTATTCGACTAGTG-T-TAAACA-----CGCAAAATAT----T--------CGA-TTTTCAAAGCATTAATAAT
gi|8 : tttaAATATCACAA------AATATAAATTTAT-T-T----------GTTAT-----------------------------GGTGTTTCTAAGTGAGAATACAGTCAATC-GT-AAAATTGAGAGTAGAATCATTATATCG-GTTATCATA--CAA-T-A---G-TG--T-----ATATATTATGAAATATA-T--T----TA-AGTTGTATTTGACCAATA-T-TAAACAAAATTTGAATAATAT----AATGTTATACGATTTTTCAAAa
gi|9 : ttttaaTAATAATATTA------AATGTAAATTCAT-T-TATA------AGTTAT--TA-AA-A-A----GAATA---AT----GGTGTTTCAAAGTGAGAATACGGTCAATC-GT-AAAATTGAGAGTAAAATCATTATATCA-ATTAACATG--CAA-T-A---T-TA--T-----ATATATAATGAAATATA-T--T----TA-ACTAGTATTTGACCAATA-T-TAAACAAAATTTGTATAATAa