lowQualScore : 11111111111111111111111111111111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111
lowQualScore : 88888888888888888888888888888888888888888888888888888888 22 2 1 1 2222 111111 333 22 1 1 33333 888888888888888888888888888 22 33333 000000000000000000000000000000000000000000000000000000000000000000000000000000 2222 44444444 1 6666666666 222 1 33333333 44444444444444 222 1 1 4444 1 1 222 5555555555555555555555555555555555555555555555555555555555555555 1 3333 77777777777777 88888888888888888888888 5555 1 2 22 1 111 33333333333 1 1 3333333 222 2222 11 11 0000000000000000000 1 1 1 222 1 44444444444444444 88888888888888888 222 77777777777777 1 222
lowQualScore : 99999999999999999999999999999999999999999999999999999999 77 2 66 4 4 6 0 5 7 1 7 6 8888 777777 999 33 6 7 5 1 7 77777 6 333333333333333333333333333 1 6 6 11 00000 000000000000000000000000000000000000000000000000000000000000000000000000000000 6666 22222222 6 6 7777777777 999 6 5 6 1 4 22222222 33333333333333 888 0 6 7 5 3333 0 5 6 5 333 8888888888888888888888888888888888888888888888888888888888888888 6 4 5 6666 55555555555555 0 7 55555555555555555555555 0000 3 5 2 0 44 0 888 55555555555 8 3 5 8888888 555 8 1111 33 1 33 3333333333333333333 0 6 0 3 2 7 1 3 2 3 4 777 5 55555555555555555 66666666666666666 66 111 3 22222222222222 4 7 333 6
lowQualScore : ........................................................ .. . .. . . . . . . . . . .... ...... ... .. . . . . . ..... . ........................... . . . .. ..... .............................................................................. .... ........ . . .......... ... . . . . . ........ .............. ... . . . . .... . . . . ... ................................................................ . . . .... .............. . . ....................... .... . . . . .. . ... ........... . . . ....... ... . .... .. . .. ................... . . . . . . . . . . . ... . ................. ................. .. ... . .............. . . ... .
lowQualScore : 00000000000000000000000000000000000000000000000000000000 55 5 55 0 0 7 7 7 3 0 3 0 7777 333333 000 00 0 0 5 0 3 00000 7 333333333333333333333333333 0 7 0 00 77777 000000000000000000000000000000000000000000000000000000000000000000000000000000 7777 88888888 7 0 3333333333 000 0 0 0 0 0 00000000 77777777777777 777 7 0 0 0 7777 7 5 0 0 000 5555555555555555555555555555555555555555555555555555555555555555 0 0 0 5555 00000000000000 7 3 33333333333333333333333 0000 0 0 5 0 00 0 000 22222222222 8 3 0 7777777 000 8 2222 88 2 33 3333333333333333333 7 0 7 3 3 3 0 7 5 0 0 000 0 55555555555555555 55555555555555555 55 555 0 00000000000000 0 0 333 0
consensus : TCAACGGAAATAAATTTCAATCTGGACTTTC-TTATTCA-----CTAACACAT-TCACT--ACAACATAGTTNCAATNNCACTNTCATNTATGTGTTTAAAGCATTTTCATTGGACAACGTCAATTTTTTAA-GACTT--ATTTTTCGATAAAACCCCTTG-GCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAG--CATCGACATTTTGATG-TCGGT-CAAC-A---TACGAAC--AAATGGCGTGCACAACGGTTCCACGCTTATTTTAATA---AT--AATAAAAN---AACAAA-A--TGTTAG--------CTA--TG---T-TTC-GT----TTATCGTTTT----ATTTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAA-CAGACC--A---GT-GTTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCANATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACA-GATCCTGGTTTACCGAACGTGAATGCTAGTCGTTGACAAAA----TTTCCACAGACCAATTTATTCGACAGGAAAAANNGAAATAAAAACATGTACATGTAGTTGAAGCTCANACGCAGGCNATCGTGAGACAACGTNAATACACAAACCTNNCACGTTAAAGTCGTTTGGAACGCTCCNAATTCGGATTCTCCATCAATTAATGAGCGTGG------A------TGACCTTCGTAAATATTGACACATTTA-GATATCTAAANACAATGGCGTGTAGACAAAAACNNAAACAATGGCGTCAGCGTCTACACTGTNTTGGGTATTTC-NTG-AA-TTATCGATATTTCTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GT-TTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTT----ACA--ATAAACCAACTNTTGTTGCAG-------------------AATTCAGCTGA-AACGGAAACAATA-ACCGTCACGATAATATTGGATATNAGGTCTANTGAATNTNATGTCAACCAGGACAGAAGTGATGTNNTTCCTNACGCGTTTGCTCTGCAGCNTAAAGTTTTGNTGNNTTAAATTTCCATTCNCTTGAGGAGTCNGAGCCTAAAATNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATCGT---CAGGATTGGAATTATAAGGATT
Reference ( gi|1 ) : TCAAC--AAACAAACT--AATGTG-ACTTGGGTTATTTAAGCAATTGAAATATGTCACTTAACAATA--ATTCCAATCTCACTTTCATATATGTA-TTGAATCATTTTCATTGGACAACATCAATTTTTTAAAGACTTTTATTTTTCGATAAAACCCCTGGCGCGGGACTAC--TTTTTACGTTATTCGTGTTAACAAAAAAAG--TA-CGACATTTTGATGGTCGGTTCAAT-ATAATACGAACGAAAATGACGTGCACCACGGCTCGGCGCTTTTTTCAATA---A---GATACAAC---AACAAA-A--TGTTAG--------CTA--TG-TTTATTTGGT----TTATTGTTTTAATGATTTCT-TTGGTTCAGCGATTTTAATCGGGCGCCACAATCAGACC--AATGGTTGTTTTGAGAAACAATGAAAAGGGTTATAAACTATTTATATTTGAGATG--TAACGGTACAATATATTGAACCACTGAACATAACCCTGGTCTACCGAACGTGATTGCTAGTCGTTTACAAAA---CTTCCCACAGACCAATTTATTCAACATGAAAAAAAGAAATAAAAACATGTAC----------AGCTCAGAAGCAGGCCATCGTGAGACAGCGTAAATACACAAATCTGTCCCATTAAAGTCATTTAAAACGTTCCAAATTCGGATTCGCCATCAATTCATGAGCGTGG------A------TGACCTTCGTAAATGTTGACACATTTATGAT--TTAAAAAT--T--C--GTAGACAAAAACCTTAACAATGACGTCAGCTTCGACACTGTGT-GGGTATTTCAGTG-AA-TAATC-ATTTTTTTA-TTTATCCAAATCGGGAGATAAAAGGCGG-GTGTTTA---A--TGTTTT--CACCTCAAAATATTTCGTGATTTT----ACA--ATAAACCAACCATTGTTGCAG-------------------AGTTCAGCTGATAACGGAAACAATA-ACCGTTACGATAATATTGAATATCAGATCTAGTGAATTTAATGTCGCTCAGTACAAAGTTGTTGTTTTTCCTT-CACGTTTACTTTGCGGCG---------GCTAGTTTAAATTTCCATTCACTTGA------CGAGC---AAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTTATATCAT---CAGGATTGGAATTATAAAGATT
gi|10 : TCAACGGAAATAAATTTCAATCTGGACTTTC-TTATTCA-----CTAACACAT-TCACT--ACAATATAATTCCAATCACATTATCATATATGTATTTAAAACATTTTGATTGGAC-ACATCAATTTTTTAAAGACTTTTATTTTTAGATAAAACCCGTGA-GCCGGACTTC---TTTTGCGTTTCTTGCGTAAAC
gi|16 : ATAACA--GTTACAATGTCACTTTCATTTATGTGTTTGAAGCTTTTCCAGAGCATAAGGCCAATTT----ATGAC--------TTCGATAAAACCCCTTGAACCGGGCTACATTTTTTACGTT
gi|8 : -TTAAAGCATTTTCATTGGACAACGTCAATTTTTTAA-GACTT--ATTTTTCGATAAAGCCCCTTGCGCCGGACTACT-TTTTTACGTTTCTCTCGTAAAC-AAAGAAG--CATCGACATTTTGA---------------------------AAATGGCGTGCATAACGGTTCCACGCTTATTTTAATA---AT--GA-AAAAT---AACAAACAC-TGTT-----------T---TG-GGTATTTCGTGAAATTATCG-----AT-ATTTCTATTTGTCCAG
gi|2 : GCGTAAACAAAGAA-G--CATCGACATTTTGATGGTCGGTTTAAC-A-ATTACGAACTTAAATGACATTTACAACGGTTCCACGCTTATTTTAATA---ATGAAATAAAAGGAAAACAAA----TGTTAGATCTAGTCCTAGCTGATTTCTTCGGT----TTATTGTTTTATAGATTTCT-TTTGTTCAGCGATTT-AACCGGGCGTCACAATCAGACC--ATAGGTTGTTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCAGATTTGAGATGTTTAGT-GTACAAT------------TGAACACAACCCTGGTTTACCGAACGTGAATGCAAGTCGTTGACAAAA----TTTCCACAGACCAATTTATTCGATAGGAAAAATA-AAATAAAAACATGTACATGTAGTTGAAGTTCAGAGGCAGACGATCGTGAGACAATGTTAATACACAAACCTTGCACGTTAAAGTCGTTTAAAACGCTCCAAATTCGGATTCTCCATCA----ATGAGCGTGGATTTATA------TGATCTTCGTAAATATTGACACATTT----T--TTAAAAACAAT--CGTGTAAACAAAAA-CTAAACAATGGCGTCAGTGTCTAAACTTTGT-GGGTATTTCCTGG-AA-TTATTGATTTTTTTGTTTTTTTTAAATCGAGAGATAAAAAGCGG-GT-TTTG---A--TTTTTT--CACCTCAAAATATTTCGTCATTTT----ACA--ATAAACCAAC
gi|5 : AAAGAAGCATA-C-ACATTTTGCTGCTCGGTACAATGATT-TACGAACGAATATGGCGTGCACCACGGTTCCACACTT----AAATATAAA---AATAGAGC---GAAAAT-AGTTGTTAG--------CTA--T-----------------TATTATTTT-----TTTGT-T--GTTCAGCG--------------CTACAAACAGAT------------------AGACAATGAAGTAGATCACAGGATGTTTACATTTGAGATG--TAGCAATACACGATCTTGTACCATTGAAC--GGTCCTGGTTTACCGGACGTGAATGCTAGTCGTTGACAAAGGTTTTTCCC
gi|3 : aaaaaattacgttacaccggactacatttctcccgcTTAACCGGGCGCCA--A--AGACCTTAA--GTAGTTTTGAGGAAGAATGAAGTAGGTCATAAAATGTCCATATTTGAAATA--AATTGATACACTATCTTGTACCATTGAATA-GATCCTGGTTTACCGAACGTGAATGCTAGTCATTGAAAAAA---AAATCAATAG-CCAATTTATTCGACAGGAAAAAATGAAATAAAAACATGTA-----------AGC--ATACACAAGCC-TTG-----CA-CGTAA-----------TGT---A--AAAGTCGTTTGGAACGTTTCTAATTCGGATTCTTTATCAATTAATGAGCGTGG------AGTTAGATGACATTCGTAAATATTGACACATTTA-GATATCTAAACAT--TGGT--GTAGACAAAAACGA-AACAATGACGTCAACTTCTACACTGTGC-GGATATATCATTG-AA-TTATC-GT-----------GTCCAAATCAGGAGATAAAAGGCGG-GTGTTTA---AATTGTTTT----CCTCAAAACATTTCGTCATATT----ACA--AAAAAACAACTTTTGTTGCAG-------------------AGTTCAGCTGGAAATGGAAACAATG-ACTGTTACGATAATGTTGAATATTAGATCTAGTGAATTTTATGTCAACCAGGACAAAAGTAATG-TATTCCTA-CATGTTTGCTCT--AGCT---------GATAGATTAAATTTCCATTCACTTGAGGAGTCTGAGC---AAATAAAc
gi|2 : ATAAGCGTGG------A--------ACCGTTGTAAATGT-----CATTTAaaaatatatacatca
gi|4 : gcgtaaacaaagaagcatcgacattttgatggtcggtttaacaattacgaactACACTGTTTTGGGTATTTC-GTG-AAATTATCGATATTTCTA-TTTGTCCAGTTCGGGAGATAATAGGCGGTGTTTTTGTGTG--TGTTTTTTCACTTCAAAATATTTCGTCATTTC----ACA--ATAAACCAACTCTTGTTACAA-------------------AATTCAGCTGATAATGGAAACAATA-ACCGTCACGATATAATTGGATATAAGGTCTATTGAATGTAATGTCAACCAGGACAGAAGTGATGTATT--CTTACGCGTTTACTTTGCAGCGTAAAGTTTTGTTGTTTT---TTTTCATTCCTTTGA------GGAGTCTAAAATTAAtttaataatgaaataaaaggaaaacaaatgttagatctagtcctagctgatttcttcggtttattgttttatagatttcttttgttcagcgatttaaccgggcgtcacaatcagaccataggttgttttgagaaacaatgaagtaggtcataaaatgttcagatttgagatgtttagtgtacaattgaacacaaccctggtttaccgaacgtgaatgcaagtcgttgacaaaatttccacagaccaatttattcgataggaaaaataaaataaaaacatgtacatgtagttgaagttcagaggcagacgatcgtgagacaatgttaatacacaaaccttgcacgttaaagtcgtttaaaacgctccaaattcggattctccatcaatgagcgtggatttatatgatcttcgtaaatattgacacattttttaaaaacaatcgtgtaaacaaaaactaaacaatggcgtcagtgtctaaactttgtgggtatttcctggaattattgatttttttgttttttttaaatcgagagataaaaagcgggttttgattttttcacctcaaaatatttcgtcattttacaataaaccaac
gi|8 : ataatgaaaaataacaaACACTGTTTTGGGTATTTC-GTGAAA-TTATCGATATTTCTA-TTTGTCCAatatatatatcataatcaggattggaattataaggattatattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|18 : ttaaagcattttcattggacaacgtcaattttttaagacttatttttcgataaagccccttgcgccggactacttttttacgtttctctcgtaaacaaagaagcatcgacattttgaaaatggcgtgcataacggttccacgcttattttaataatgaaaaataacaaTGATTTTGCGTACATCACAAACCAAACGCTGTTGCAGGTCGGATTTTTTGCCTCAAAATTAAACTGA---CGTAAACAATACACCAT--CG--GATATTTGATATCAGg
gi|4 : ATATATATATCATAATCAGGATTGGAATTATAAGGATTcta
gi|6 : ataatgaaaaataacaaacactgttttgggtatttcgtgaaattatcgatatttctatttgtccagttcgggagataataggcggtgtttttgtgtgtgttttttcacttcaaaatatttcgtcatttcacaataaaccaactcttgttacaaaattcagctgataatggaaacaataaccgtcacgatataattggatataaggtctattgaatgtaatgtcaaccaggacagaagtgatgtattcttacgcgtttactttgcagcgtaaagttttgttgttttttttcattcctttgaggagtctaaaattaaATATCGT---CAGGATTGGAATTATAAGGATTatattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|9 : tattcctacgcatttacctggcaaaggatattttaataatctattcatttactttactttaaaATCAT---CAGGATTGGAATTATAAGGATTtttttctctgctgttatgcatgtgtaatgattgtcgaatcgcgtgcaaacattgcataaattcattcggacttattcgatttgtgcgtgtttcgacattcattacatatgcataaaaacaaaaagatggaatttattcccataataaaaagtttttttcattataattataatatttag
10 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ACTATGAAAACATACTGTTTTCGCAGACATAGATGTAGGTAACAGGATGTCCTTTTTTTTATTTTATAATTTGCGAGAAAACGATTCTTTTTTACTGAACATCAAATGCTTTCTATTGACATAAAGCATTTTATCCATTTGGCAAATATATTAGAAAGGAAATATAAAATACACATTTATAGTTTAAAATTCAAAAGAAGAACAAGGTCGTGAAATGTAAATAAACACACAGTGGAAGTCCGGAAACGTCCCGAA
Unaligned ( gi|11 ): CTTGGCTTTTATGCATGTGTAAATATATTGAATAATGTGCAAATTTACCTTACAGAAAATCTGACTTCGCACAATTGGTGTATGGTATCGCATTACTTATACATGCATAGAAGCCAAGAAAAAAAATGAAATTATTCCTATAATA
Unaligned ( gi|12 ): CGCTGACATAAAGTCCTTAGAACTTTTGTTGATTTGTGCGTTATTCAGCATTCTTTACAGCTGCATAAAAACCGGAAAAATGACTTTATCTTATAAAAATATATGTGTCCTTATAAGTTTATATTTA
Unaligned ( gi|13 ): TTCTGCGGCTATGATAAGTAAACAAAAACACATTTTGTACTTGTAATATCTTTTATTTCAAAATAAATAAACAACTGAATCACACACATGCTTAAATATTGGTATAATGAAAAACA
Unaligned ( gi|14 ): TAAGGATTAAATGTATTTTCTGCTGTTTATAAATGCAGGTGTGATATCAAATCAAGCATAGTTCTTTTGGACTGTATTCGATGTGTACGTGATTCTTTACATAAAAACAGA
Unaligned ( gi|15 ): TTAAATAATTAAATTTAATTTTTCTGAATTTTATGCATGTGTACAGAACGTTGAATCAAGCACTAATTTTTCATAAAGTTCTGTTTAAACCCAGGAAAAAAATGATAATAG
Unaligned ( gi|17 ): TATTCCTACGCACAAACTATGCAACGGATTGTTTAATGGTTCATTCATTCATTTTCATGTCTGATACTAAATTTTTTTTCGTCAGGATTTGAATTTTAAGGATT
Unaligned ( gi|19 ): TTCGGATTTTATTCGATTTGTTGGTGATTCGACATTCGGTATACATGAATTTAATCCTATAATAAAA
Unaligned ( gi|20 ): TGCCGAATTACGCACAAACCTGACATAAAGTCCTTCAAATCATATGATG
Unaligned ( gi|21 ): GTAAAGAATATCAAATCACGCATAAATCTGTCATAAAGTC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 11 11 1 222 55555 2 1 1 1 1 222222 3 222 1111 9999999999999999999999999999 11 2222 1111 0000000000000000000000000000000000000000000000 4444444444 1 11111 33 6666666666666666 11 22 1 1111 1 77777777777777 1 11111111111111 6666666666666 666666666666666666666 22 22 2222 1 11111111111 1 2 11 222222 1 22 1 11 11 77777777777 111 1 666666666 4444444444444444444444444444444444444444444444 111
lowQualScore : 77 88 2 5 555 00000 2 0 5 3 0 1 22 1 1 0 3 0 3 3 0 0 777777 3 0 999 2222 3 3 5555555555555555555555555555 33 3 3 0 0000 9 8888 8888888888888888888888888888888888888888888888 2 3 2222222222 0 00000 0 2 22 9999999999999999 1 33 7777 55 2 33 0 8888 0 7 888 77777777777777 1 6 88 6 4 77777777777777 11 0 1 7 6666666666666 333333333333333333333 88 0 6 2 22 2222 0 55555555555 0 0 0 4 33 888888 2 1 0 0 33 0 2 1 0 1 1 1 0 55 7 44 4 2 2 11111111111 1 444 000 0 1 2 000000000 1 6666666666666666666666666666666666666666666666 4 3 444
lowQualScore : .. .. . . ... ..... . . . . . . .. . . . . . . . . . ...... . . ... .... . . ............................ .. . . . .... . .... .............................................. . . .......... . ..... . . .. ................ . .. .... .. . .. . .... . . ... .............. . . .. . . .............. .. . . . ............. ..................... .. . . . .. .... . ........... . . . . .. ...... . . . . .. . . . . . . . . .. . .. . . . ........... . ... ... . . . ......... . .............................................. . . ...
lowQualScore : 55 00 5 0 555 00000 5 0 5 3 7 0 00 0 0 7 2 2 2 2 0 0 888888 0 0 666 5555 2 2 0000000000000000000000000000 88 0 2 8 2222 8 5555 0000000000000000000000000000000000000000000000 0 2 8888888888 0 33333 2 5 55 2222222222222222 0 88 8888 55 5 22 0 8888 0 3 777 00000000000000 0 7 33 7 0 77777777777777 33 7 0 3 7777777777777 333333333333333333333 00 7 7 5 55 0000 0 88888888888 2 0 0 2 88 888888 5 0 2 0 22 0 5 0 7 0 0 0 7 00 3 00 2 0 5 22222222222 0 000 222 0 0 5 888888888 0 0000000000000000000000000000000000000000000000 7 2 000
consensus : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTNGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATAAT-TA---CGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAAT--GATAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGT----TTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA---AG-----GCTCAGANGCAGGCCATCGCGAGACAACGT-AATACACAAACCT--C-CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-G--ATTTAAA-ACAAT---GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTN-TGGGTATTTCANT-GAA-TTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTAA--TGT------TTTCACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCT-GATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGT-TTTCCTTACGCGTTTACTTTGCAGCGT--AGTT--TTGTTANTTTAAATTTC-CATTCACTTGAGGAGT-CGAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
Reference ( family-1580 ) : TCAACGGAAATAAATTTCAATCTGGACTTTC-TTATTCA-----CTAACACAT-TCACTACAACA-TAGTTNCAATNNCACTNTCATNTATGTGTTTAAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTG-GCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATG-TCGGT-C-AACA---TA---CGAAC--AAAT--GGCGTGCACAACGGTTCCACGCTTATTTTAATAAT--AATAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTC----GT----TTATCGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAA-CAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCANATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACA-GATCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAANNGAAATAAAAACATGTACATGTAGTTGAAGCTCANACGCAGGCNATCGTGAGACAACGTNAATACACAAACCTNNCACGTTAAAGTCGTTTGGAACGCTCCNAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GATATCTAAANACAATGGCGTGTAGACAAAAACNNAAACAATGGCGTCAGCGTCTACACTGTNTTGGGTATTTC-NT-GAA-TTATCGATATTTCTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GT-TTTGA--TGT------TTTCACCTCAAAATATTTCGTCATTTTACAATAAACCAACTNTTGTTGCAGAATTCAGCT-GA-AACGGAAACAATA-ACCGTCACGATAATATTGGATATNAGGTCTANTGAATNTNATGTCAACCAGGACAGAAGTGATGTNNTTCCTNACGCGTTTGCTCTGCAGCNTAAAGTT--TTGNTGNNTTAAATTTC-CATTCNCTTGAGGAGTCNGAGCCTAAAATNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATCGT---CAGGATTGGAATTATAAGGATT
gi|1 : TCAAC--AAACAAACT--AATGTG-ACTTGGGTTATTTAAGCAATTGAAATATGTCACT-TAACAATAATTCCAATCTCACTTTCATATATGTATT-GAATCATTTTCATTGGACAACATCAATTTTTT-AAAGAC--TTTTATTTTTCGATAAAACCCCTGGCGCGGGACTAC--TTTTTACGTTATTCGTGTTAACAAAAAAAGTA-CGACATTTTGATGGTCGGTTC-AATA---TAATACGAACGAAAAT--GACGTGCACCACGGCTCGGCGCTTTTTTCAATAA---GATACAAC---AACAAA----A-----TGTTAG--------CTA--TG-TTTATTTGGT----TTATTGTTTTAATGAT----TTCT-TTGGTTCAGCGATTTTAATCGGGCGCCACAATCAGACC---A---AT-GGTTGTTTTGAGAAACAATGAAAAGGGTTATAAACTATTTATATTTGAGATG--TAACGGTACAATATATTGAACCACTGAACATAACCCTGGTCTACCGAACGTGATTGCTAGTCGTTT-ACAAAA---CTTCCCACAGACCAATTTATTCAACATGAAAAAAAGAAATAAAAACATGTACA----------GCTCAGAAGCAGGCCATCGTGAGACAGCGTAAATACACAAATCTGTCCCATTAAAGTCATTTAAAACGTTCCAAATTCGGATTCGCCATCAATTCATGAGCGTG------G------ATGACCTTCGTAAATGTTGACACATTTATG--ATTTAAA---AAT---TCGTAGACAAAAACCTTAACAATGACGTCAGCTTCGACACTGTG-TGGGTATTTCAGT-GAA-TAATC-ATTTTTTTA-TTTATCCAAATCGGGAGATAAAAGGCGG-GTGTTTAA--TGT------TTTCACCTCAAAATATTTCGTGATTTTACAATAAACCAACCATTGTTGCAGAGTTCAGCT-GATAACGGAAACAATA-ACCGTTACGATAATATTGAATATCAGATCTAGTGAATTTAATGTCGCTCAGTACAAAGTTGTTGTTTTTCCTT-CACGTTTACTTTGCGGCG-----------GCTAGTTTAAATTTC-CATTCACTTGA------CGAGC---AAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTTATATCAT---CAGGATTGGAATTATAAAGATT
gi|10 : TCAACGGAAATAAATTTCAATCTGGACTTTC-TTATTCA-----CTAACACAT-TCACTACAATA-TAATTCCAATCACATTATCATATATGTATTTAAAACATTTTGATTGGAC-ACATCAATTTTTTAAA-GACTTTT--ATTTTTAGATAAAACCCGTGA-GCCGGACTTC---TTTTGCGTTTCTTGCGTAAAC
gi|16 : A-CAGTTACAATGTCACTTTCATTTATGTGTTTGAAGCTTTTCCAGAGCATAAGGCCAA---TTT-AT-GAC----------TTCGATAAAACCCCTTGAACCGGGCTACATTTTTTACGTT
gi|17 : ataTCGT---CAGGATTTGAATTTTAAGGATT
gi|18 : tattcctacgcacaaactatgcaacggattgtttaatggttcattcattcattttcatgtctgatactaaatttttttTTTTGCCTCAAAATTAAACT-GA---CGTAAACAATACACCATCG----GATATTTGATATCAG
gi|2 : tgattttgcgtacatcacaaaccaaacgctgttgcaggtcggattGCGTAAACAAA-GAAGCATCGACATTTTGATGGTCGGT-TTAACAAT-TA---CGAACTTAAAT--GACATTTACAACGGTTCCACGCTTATTTTAATAATGAAATAAAAGGAAAACAAA----------TGTTAGATCTAGTCCTAGCTGATTTCTTCGGT----TTATTGTTTTA----TAGATTTCT-TTTGTTCAGCGATTT-AACCGGGCGTCACAATCAGACC---ATAGGTTG----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCAGATTTGAGATGTTTAG-------------TGTACAATTGAACACAACCCTGGTTTACCGAACGTGAATGCAAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGATAGGAAAAATA-AAATAAAAACATGTACATGTAGTTGAAGTTCAGAGGCAGACGATCGTGAGACAATGTTAATACACAAACCTTGCACGTTAAAGTCGTTTAAAACGCTCCAAATTCGGATTCTCCATC----AATGAGCGTG------GATTTATATGATCTTCGTAAATATTGACACATTT------TTTAAAAACAAT--CGTGTAAACAAAAAC-TAAACAATGGCGTCAGTGTCTAAACT-TTGTGGGTATTTC-CTGGAA-TTATTGATTTTTTTGTTTTTTTTAAATCGAGAGATAAAAAGCGG-GT-TTTGA--TTT------TTTCACCTCAAAATATTTCGTCATTTTACAATAAACCAACcta
gi|3 : TT-AACCGGGCGCCA--A--AGACCTTAA---GTAG----TTTTGAGGAAGAATGAAGTAGGTCATAAAATGTCCATATTTGAAATA--AATTGATACACTATCTTGTACCATTGAATA-GATCCTGGTTTACCGAACGTGAATGCTAGTCATTGAAAAAAA---AATCA-ATAG-CCAATTTATTCGACAGGAAAAAATGAAATAAAAACATGTA-----AG--------CATACACAAGCC-TTGC------ACGT-AAT---------------GTAAAAGTCGTTTGGAACGTTTCTAATTCGGATTCTTTATCAATTAATGAGCGTGGAGTTAG------ATGACATTCGTAAATATTGACACATTTA-GATATCTAA--ACATTG--GTGTAGACAAAAAC-GAAACAATGACGTCAACTTCTACACTGTG-CGGATATATCATT-GAA-TTATCG------------TGTCCAAATCAGGAGATAAAAGGCGG-GTGTTTAAATTGT------TTT--CCTCAAAACATTTCGTCATATTACAAAAAAACAACTTTTGTTGCAGAGTTCAGCTGGA-AATGGAAACAATG-ACTGTTACGATAATGTTGAATATTAGATCTAGTGAATTTTATGTCAACCAGGACAAAAGTAATGT-ATTCCT-ACATGTTTGCTCT--AGC-----------TGATAGATTAAATTTC-CATTCACTTGAGGAGTCTGAGC---AAATAAA
gi|4 : ACACTGTTTTGGGTATTTC-GT-GAAATTATCGATATTTCTA-TTTGTCCAGTTCGGGAGATAATAGGCGGTGT-TTTTG--TGTGTGTTTTTTCACTTCAAAATATTTCGTCATTTCACAATAAACCAACTCTTGTTACAAAATTCAGCT-GATAATGGAAACAATA-ACCGTCACGATATAATTGGATATAAGGTCTATTGAATGTAATGTCAACCAGGACAGAAGTGATGTATT--CTTACGCGTTTACTTTGCAGCGTAAAGTT--TTGTTGTTTT---TTTT-CATTCCTTTGAGGAGT------CTAAAATTAAaaaatatatacatca
gi|4 : ataatgaaaaataacaaATATATATATCATAATCAGGATTGGAATTATAAGGATTatatatatatcataatcaggattggaattataaggattatattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|5 : ataatgaaaaataacaaacactgttttgggtatttcgtgaaattatcgatatttctatttgtccagttcgggagataataggcggtgtttttgtgtgtgttttttcacttcaaaatatttcgtcatttcacaataaaccaactcttgttacaaaattcagctgataatggaaacaataaccgtcacgatataattggatataaggtctattgaatgtaatgtcaaccaggacagaagtgatgtattcttacgcgtttactttgcagcgtaaagttttgttgttttttttcattcctttgaggagtctaaaattaaCCGGACTAC---------ATTTCTCCCGCAAA-----GAAGCATACACATTTTGCTGCTCGGTAC-AATGATTTA---CGAAC--GAATATGGCGTGCACCACGGTTCCACACTTA----AATA-T--AAAAATAG---AGCGAA----AATAGTTGTTAG--------CTA--T-----------------TATTATTTT-----------TTT-GTTGTTCAGCG--------------CTACAAACAGAT-----------------------AGACAATGAAGTAGATCACAGGATGTTTACATTTGAGATG--TAGCAATACACGATCTTGTACCATTGAAC--GGTCCTGGTTTACCGGACGTGAATGCTAGTCGTTG-ACAAAGGTTTTTCC-atattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|6 : aaaaaattacgttacaATATCGT---CAGGATTGGAATTATAAGGATTcc
gi|8 : tattcctacgcatttacctggcaaaggatattttaataatctattcatttactttactttaaaTTAAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAGCCCCTTGCGCCGGACTACT-TTTTTACGTTTCTCTCGTAAAC-AAAGAAGCATCGACATTTTGA------------------------------AAAT--GGCGTGCATAACGGTTCCACGCTTATTTTAATAAT--GA-AAAAT---AACAAACACTG-----TTTTGG--------GTA-----TTTC----GTGAAATTATCG--ATA----T----TTCTATTTGTCCAGtttttctctgctgttatgcatgtgtaatgattgtcgaatcgcgtgcaaacattgcataaattcattcggacttattcgatttgtgcgtgtttcgacattcattacatatgcataaaaacaaaaagatggaatttattcccataataaaaagtttttttcattataattataatatttag
gi|9 : CTTACGCGTTTTCTTTGCAGCGTTTAATTATTTTTTATTTTATTTTTTTCATTCACTTCAGGAGT------CTAAAATTAA
gi|9 : tATGTA-ATCAT---CAGGATTGGAATTATAAGGATTatgtaatcatcaggattggaattataaggattaaattcatttttttctggtttttatgcatgtgtaaagaatgtcgaatcacgcacaaatctgacattaagtccttcggactcctataatgaaaaatatacgatcaata
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTATGAAAACATACTGTTTTCGCAGACATAGATGTAGGTAACAGGATGTCCTTTTTTTTATTTTATAATTTGCGAGAAAACGATTCTTTTTTACTGAACATCAAATGCTTTCTATTGACATAAAGCATTTTATCCATTTGGCAAATATATTAGAAAGGAAATATAAAATACACATTTATAGTTTAAAATTCAAAAGAAGAACAAGGTCGTGAAATGTAAATAAACACACAGTGGAAGTCCGGAAACGTCCCGAA
Unaligned ( gi|11 ): CTTGGCTTTTATGCATGTGTAAATATATTGAATAATGTGCAAATTTACCTTACAGAAAATCTGACTTCGCACAATTGGTGTATGGTATCGCATTACTTATACATGCATAGAAGCCAAGAAAAAAAATGAAATTATTCCTATAATA
Unaligned ( gi|12 ): CGCTGACATAAAGTCCTTAGAACTTTTGTTGATTTGTGCGTTATTCAGCATTCTTTACAGCTGCATAAAAACCGGAAAAATGACTTTATCTTATAAAAATATATGTGTCCTTATAAGTTTATATTTA
Unaligned ( gi|13 ): TTCTGCGGCTATGATAAGTAAACAAAAACACATTTTGTACTTGTAATATCTTTTATTTCAAAATAAATAAACAACTGAATCACACACATGCTTAAATATTGGTATAATGAAAAACA
Unaligned ( gi|14 ): TAAGGATTAAATGTATTTTCTGCTGTTTATAAATGCAGGTGTGATATCAAATCAAGCATAGTTCTTTTGGACTGTATTCGATGTGTACGTGATTCTTTACATAAAAACAGA
Unaligned ( gi|15 ): TTAAATAATTAAATTTAATTTTTCTGAATTTTATGCATGTGTACAGAACGTTGAATCAAGCACTAATTTTTCATAAAGTTCTGTTTAAACCCAGGAAAAAAATGATAATAG
Unaligned ( gi|19 ): TTCGGATTTTATTCGATTTGTTGGTGATTCGACATTCGGTATACATGAATTTAATCCTATAATAAAA
Unaligned ( gi|20 ): TGCCGAATTACGCACAAACCTGACATAAAGTCCTTCAAATCATATGATG
Unaligned ( gi|21 ): GTAAAGAATATCAAATCACGCATAAATCTGTCATAAAGTC
Alignments
lowQualScore : 11 11 1 111 22222 1 1 1 1 1 222222 222 1111 55555555555555555555 11 222 1111 666666666666666666666666666666666666666666 4444444444 1 11111 6666666666666666 11 1 1111 1 666666666666 1 5555555555555555555 6666666666666 222222222 2 1 1 11 1 222222 111 1 1 7777777777777 2222 555555555 444444444444444444444444444444444444444444444 111
lowQualScore : 77 88 1 5 777 66666 1 5 5 3 3 0 3 3 0 0 777777 8 999 2222 3 3 2 00000000000000000000 33 1 3 0 66 333 8888 111111111111111111111111111111111111111111 3 2222222222 0 00000 0 2 9 9999999999999999 0 33 7777 55 2 33 6 0 8888 0 7 6 7 999999999999 1 7 77 3 5555555555555555555 7 6666666666666 222222222 6 6 0 3 1 0 444 6666 0 00 0 0 8 666666 666 1 0 9 0 2 0 0 8 2 7 1 2 1111111111111 1 1 0000 2 666666666 555555555555555555555555555555555555555555555 1 3 444
lowQualScore : .. .. . . ... ..... . . . . . . . . . . ...... . ... .... . . . .................... .. . . . .. ... .... .......................................... . .......... . ..... . . . ................ . .. .... .. . .. . . .... . . . . ............ . . .. . ................... . ............. ......... . . . . . . ... .... . .. . . . ...... ... . . . . . . . . . . . . ............. . . .... . ......... ............................................. . . ...
lowQualScore : 55 00 0 0 000 55555 0 0 5 3 2 2 2 2 0 0 888888 8 666 5555 2 2 5 55555555555555555555 88 0 2 8 55 555 5555 555555555555555555555555555555555555555555 2 8888888888 0 33333 2 5 8 2222222222222222 8 88 8888 55 5 55 5 0 8888 0 3 7 3 777777777777 0 3 33 3 7777777777777777777 3 7777777777777 777777777 7 7 7 3 0 0 888 2222 8 88 2 0 8 000000 222 2 2 8 0 5 2 7 3 0 0 2 5 5555555555555 2 0 2222 5 555555555 000000000000000000000000000000000000000000000 0 2 000
consensus : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTGT-GGGTATTTCGTNGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTATTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
Reference ( family-1580 ) : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTNGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTNT-GGGTATTTCANTGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTA---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTTTTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
gi|1 : TCAAC--AAACAAACT--AATGTG-ACTTGGGTTATTTAAGCAATTGAAATATGTCACT-TAACAATAATTCCAATCTCACTTTCATATATGTATT-GAATCATTTTCATTGGACAACATCAATTTTTT-AAAGAC--TTTTATTTTTCGATAAAACCCCTGGCGCGGGACTAC--TTTTTACGTTATTCGTGTTAACAAAAAAAGTA-CGACATTTTGATGGTCGGTTC-AATATAAT-ACGAACGAAAAT--GACGTGCACCACGGCTCGGCGCTTTTTTCAATAA-GA--TACAAC---AACAAA----A-----TGTTAG--------CTA--TG-TTTATTTGGTTTATTGTTTTAATGAT----TTCT-TTGGTTCAGCGATTTTAATCGGGCGCCACAATCAGACC---A---AT-GGTTGTTTTGAGAAACAATGAAAAGGGTTATAAACTATTTATATTTGAGATG--TAACGGTACAATATATTGAACCACTGAACATAACCCTGGTCTACCGAACGTGATTGCTAGTCGTTT-ACAAAA---CTTCCCACAGACCAATTTATTCAACATGAAAAAAAGAAATAAAAACATGTACA----------GCTCAGAAGCAGGCCATCGTGAGACAGCG-TAAATACACAAATCTGTCC---CATTAAAGTCATTTAAAACGTTCCAAATTCGGATTCGCCATCAATTCATGAGCGTG------G------ATGACCTTCGTAAATGTTGACACATTTATGAT-TT-AAAA--AT-TCGTAGACAAAAACCTTAACAATGACGTCAGCTTCGACACTGTGT-GGGTATTTCAGTGAATAATC-ATTTTTTTA-TTTATCCAAATCGGGAGATAAAAGGCGG-GTGTTTA---A--TGTTTT--CACCTCAAAATATTTCGTGATTTTACAATAAACCAACCATTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTTACGATAATATTGAATATCAGATCTAGTGAATTTAATGTCGCTCAGTACAAAGTTGTTGTTTTTCCTTCACGTTTACTTTGCGGCG-------------GCTAGTTTA-AATTTCCATTCACTTGA-----C-GAGC---AAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTTATATCAT---CAGGATTGGAATTATAAAGATT
gi|10 : TCAACGGAAATAAATTTCAATCTGGACTTTC-TTATTCA-----CTAACACAT-TCACTACAATA-TAATTCCAATCACATTATCATATATGTATTTAAAACATTTTGATTGGAC-ACATCAATTTTTTAAA-GACTTTT--ATTTTTAGATAAAACCCGT-GAGCCGGACTTC---TTTTGCGTTTCTTGCGTAAAC
gi|16 : A-CAGTTACAATGTCACTTTCATTTATGTGTTTGAAGCTTTTCCAGAGCATAAGGCCAA---TTT-AT-GAC----------TTCGATAAAACCCCTTGAACCGGGCTACATTTTTTACGTT
gi|17 : ataTCGT---CAGGATTTGAATTTTAAGGATT
gi|18 : tattcctacgcacaaactatgcaacggattgtttaatggttcattcattcattttcatgtctgatactaaatttttttTTTTGCCTCAAAATTAAACTGA---CGTAAACAATACACCATCG----GATATTTGATATCAG
gi|2 : tgattttgcgtacatcacaaaccaaacgctgttgcaggtcggattGCGTAAACAAA-GAAGCATCGACATTTTGATGGTCGGT-TTAACA-ATT-ACGAACTTAAAT--GACATTTACAACGGTTCCACGCTTATTTTAATAATGAAATAAAAGGAAAACAAA----------TGTTAGATCTAGTCCTAGCTGATTTCTTCGGTTTATTGTTTTA----TAGATTTCT-TTTGTTCAGCGATTT-AACCGGGCGTCACAATCAGACC---ATAGGTTG----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCAGATTTGAGATGTTTAG-------------TGTACAATTGAACACAACCCTGGTTTACCGAACGTGAATGCAAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGATAGGAAAAATA-AAATAAAAACATGTACATGTAGTTGAAGTTCAGAGGCAGACGATCGTGAGACAATGTTAA-TACACAAACCT---TGCACGTTAAAGTCGTTTAAAACGCTCCAAATTCGGATTCTCCATC----AATGAGCGTG------GATTTATATGATCTTCGTAAATATTGACACATTT----T-TTAAAAACAATCGTGTAAACAAAAAC-TAAACAATGGCGTCAGTGTCTAAACTTTGT-GGGTATTTCCTGGAATTATTGATTTTTTTGTTTTTTTTAAATCGAGAGATAAAAAGCGG-GT-TTTG---A--TTTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACcta
gi|3 : TT-AACCGGGCGCCA--A--AGACCTTAA---GTAG----TTTTGAGGAAGAATGAAGTAGGTCATAAAATGTCCATATTTGAAATA--AATTGATACACTATCTTGTACCATTGAATA-GATCCTGGTTTACCGAACGTGAATGCTAGTCATTGAAAAAAA---AATCA-ATAG-CCAATTTATTCGACAGGAAAAAATGAAATAAAAACATGT--A--------AG---CATACACAAGCC-TTGC------ACG-TAA-T------------------GTAAAAGTCGTTTGGAACGTTTCTAATTCGGATTCTTTATCAATTAATGAGCGTGGAGTTAG------ATGACATTCGTAAATATTGACACATTTA-GATATC-TAAACATTGGTGTAGACAAAAAC-GAAACAATGACGTCAACTTCTACACTGTGC-GGATATATCATTGAATTATCG------------TGTCCAAATCAGGAGATAAAAGGCGG-GTGTTTA---AATTGTTTT----CCTCAAAACATTTCGTCATATTACAAAAAAACAACTTTTGTTGCAGAGTTCAGCTGGAAATGGAAACAATG-ACTGTTACGATAATGTTGAATATTAGATCTAGTGAATTTTATGTCAACCAGGACAAAAGTAATGTATTCC-TACATGTTTGCTCT--AGC-------------TGATAGATTA-AATTTCCATTCACTTGAGGAGTCTGAGC---AAATAAA
gi|4 : ACACTGTTTTGGGTATTTCGTGAAATTATCGATATTTCTA-TTTGTCCAGTTCGGGAGATAATAGGCGGTGTTTTTGTGTG--TGTTTTTTCACTTCAAAATATTTCGTCATTTCACAATAAACCAACTCTTGTTACAAAATTCAGCTGATAATGGAAACAATA-ACCGTCACGATATAATTGGATATAAGGTCTATTGAATGTAATGTCAACCAGGACAGAAGTGATGTATT-CTTACGCGTTTACTTTGCAGCG--TAAAGT--TTTGTTGTTTT----TTTTCATTCCTTTGAGGAGT------CTAAAATTAAaaaatatatacatca
gi|4 : ataatgaaaaataacaaATATATATATCATAATCAGGATTGGAATTATAAGGATTatatatatatcataatcaggattggaattataaggattatattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|5 : ataatgaaaaataacaaacactgttttgggtatttcgtgaaattatcgatatttctatttgtccagttcgggagataataggcggtgtttttgtgtgtgttttttcacttcaaaatatttcgtcatttcacaataaaccaactcttgttacaaaattcagctgataatggaaacaataaccgtcacgatataattggatataaggtctattgaatgtaatgtcaaccaggacagaagtgatgtattcttacgcgtttactttgcagcgtaaagttttgttgttttttttcattcctttgaggagtctaaaattaaTTACACCGGACTAC---------ATTTCTCCCGCAAA-----GAAGCATACACATTTTGCTGCTCGGTAC-AATG-ATTTACGAAC--GAATATGGCGTGCACCACGGTTCCACACTTA----AATA-TAA--AAATAG---AGCGAA----AATAGTTGTTAG--------CTA--T-------------TATTATTTT-----------TTT-GTTGTTCAGCG--------------CTACAAACAGAT-----------------------AGACAATGAAGTAGATCACAGGATGTTTACATTTGAGATG--TAGCAATACACGATCTTGTACCATTGA--ACGGTCCTGGTTTACCGGACGTGAATGCTAGTCGTTG-ACAAAGGTTTTTCC-atattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|6 : aaaaaattacgATATCGT---CAGGATTGGAATTATAAGGATTcc
gi|8 : tattcctacgcatttacctggcaaaggatattttaataatctattcatttactttactttaaaTTAAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAGCCCCTTGCGCCGGACTACT-TTTTTACGTTTCTCTCGTAAAC-AAAGAAGCATCGACATTTTGA----------------------------AAAT--GGCGTGCATAACGGTTCCACGCTTATTTTAATAATGA---AAAAT---AACAAACACTG-----TTTTGG--------GTA-----TTTCGTGAAATTATCG--ATA----T----TTCTATTTGTCCAGtttttctctgctgttatgcatgtgtaatgattgtcgaatcgcgtgcaaacattgcataaattcattcggacttattcgatttgtgcgtgtttcgacattcattacatatgcataaaaacaaaaagatggaatttattcccataataaaaagtttttttcattataattataatatttag
gi|9 : CTTACGCGTTTTCTTTGCAGCGTTT--AATTATTTTTTATTTTATTTTTTTCATTCACTTCAGGAGT------CTAAAATTAA
gi|9 : tTAAATGTA-ATCAT---CAGGATTGGAATTATAAGGATTatgtaatcatcaggattggaattataaggattaaattcatttttttctggtttttatgcatgtgtaaagaatgtcgaatcacgcacaaatctgacattaagtccttcggactcctataatgaaaaatatacgatcaata
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTATGAAAACATACTGTTTTCGCAGACATAGATGTAGGTAACAGGATGTCCTTTTTTTTATTTTATAATTTGCGAGAAAACGATTCTTTTTTACTGAACATCAAATGCTTTCTATTGACATAAAGCATTTTATCCATTTGGCAAATATATTAGAAAGGAAATATAAAATACACATTTATAGTTTAAAATTCAAAAGAAGAACAAGGTCGTGAAATGTAAATAAACACACAGTGGAAGTCCGGAAACGTCCCGAA
Unaligned ( gi|11 ): CTTGGCTTTTATGCATGTGTAAATATATTGAATAATGTGCAAATTTACCTTACAGAAAATCTGACTTCGCACAATTGGTGTATGGTATCGCATTACTTATACATGCATAGAAGCCAAGAAAAAAAATGAAATTATTCCTATAATA
Unaligned ( gi|12 ): CGCTGACATAAAGTCCTTAGAACTTTTGTTGATTTGTGCGTTATTCAGCATTCTTTACAGCTGCATAAAAACCGGAAAAATGACTTTATCTTATAAAAATATATGTGTCCTTATAAGTTTATATTTA
Unaligned ( gi|13 ): TTCTGCGGCTATGATAAGTAAACAAAAACACATTTTGTACTTGTAATATCTTTTATTTCAAAATAAATAAACAACTGAATCACACACATGCTTAAATATTGGTATAATGAAAAACA
Unaligned ( gi|14 ): TAAGGATTAAATGTATTTTCTGCTGTTTATAAATGCAGGTGTGATATCAAATCAAGCATAGTTCTTTTGGACTGTATTCGATGTGTACGTGATTCTTTACATAAAAACAGA
Unaligned ( gi|15 ): TTAAATAATTAAATTTAATTTTTCTGAATTTTATGCATGTGTACAGAACGTTGAATCAAGCACTAATTTTTCATAAAGTTCTGTTTAAACCCAGGAAAAAAATGATAATAG
Unaligned ( gi|19 ): TTCGGATTTTATTCGATTTGTTGGTGATTCGACATTCGGTATACATGAATTTAATCCTATAATAAAA
Unaligned ( gi|20 ): TGCCGAATTACGCACAAACCTGACATAAAGTCCTTCAAATCATATGATG
Unaligned ( gi|21 ): GTAAAGAATATCAAATCACGCATAAATCTGTCATAAAGTC
Alignments
lowQualScore : 11 11 1 111 22222 1 1 1 1 1 222222 222 1111 55555555555555555555 11 222 1111 666666666666666666666666666666666666666666 4444444444 1 11111 6666666666666666 11 1 1111 1 666666666666 1 5555555555555555555 6666666666666 222222222 2 1 1 11 1 222222 111 1 1 7777777777777 2222 555555555 444444444444444444444444444444444444444444444 111
lowQualScore : 77 88 1 5 777 66666 1 5 5 3 3 0 3 3 0 0 777777 2 999 2222 3 3 2 00000000000000000000 33 1 3 0 66 333 8888 111111111111111111111111111111111111111111 3 2222222222 0 00000 0 2 9 9999999999999999 0 33 7777 55 2 33 6 0 8888 0 7 6 7 999999999999 1 7 77 3 5555555555555555555 7 6666666666666 222222222 6 6 0 3 0 4 1 6666 0 00 0 0 8 666666 666 1 0 9 0 2 0 0 2 7 1 2 1111111111111 1 1 0000 2 666666666 555555555555555555555555555555555555555555555 1 3 444
lowQualScore : .. .. . . ... ..... . . . . . . . . . . ...... . ... .... . . . .................... .. . . . .. ... .... .......................................... . .......... . ..... . . . ................ . .. .... .. . .. . . .... . . . . ............ . . .. . ................... . ............. ......... . . . . . . . .... . .. . . . ...... ... . . . . . . . . . . . ............. . . .... . ......... ............................................. . . ...
lowQualScore : 55 00 0 0 000 55555 0 0 5 3 2 2 2 2 0 0 888888 5 666 5555 2 2 5 55555555555555555555 88 0 2 8 55 555 5555 555555555555555555555555555555555555555555 2 8888888888 0 33333 2 5 8 2222222222222222 8 88 8888 55 5 55 5 0 8888 0 3 7 3 777777777777 0 3 33 3 7777777777777777777 3 7777777777777 777777777 7 7 7 3 0 2 0 2222 8 88 2 0 8 000000 222 2 2 8 0 5 2 7 0 0 2 5 5555555555555 2 0 2222 5 555555555 000000000000000000000000000000000000000000000 0 2 000
consensus : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTGT-GGGTATTTCGTNGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTATTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
Reference ( family-1580 ) : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTGT-GGGTATTTCGTNGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTATTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
gi|1 : TCAAC--AAACAAACT--AATGTG-ACTTGGGTTATTTAAGCAATTGAAATATGTCACT-TAACAATAATTCCAATCTCACTTTCATATATGTATT-GAATCATTTTCATTGGACAACATCAATTTTTT-AAAGAC--TTTTATTTTTCGATAAAACCCCTGGCGCGGGACTAC--TTTTTACGTTATTCGTGTTAACAAAAAAAGTA-CGACATTTTGATGGTCGGTTC-AATATAAT-ACGAACGAAAAT--GACGTGCACCACGGCTCGGCGCTTTTTTCAATAA-GA--TACAAC---AACAAA----A-----TGTTAG--------CTA--TG-TTTATTTGGTTTATTGTTTTAATGAT----TTCT-TTGGTTCAGCGATTTTAATCGGGCGCCACAATCAGACC---A---AT-GGTTGTTTTGAGAAACAATGAAAAGGGTTATAAACTATTTATATTTGAGATG--TAACGGTACAATATATTGAACCACTGAACATAACCCTGGTCTACCGAACGTGATTGCTAGTCGTTT-ACAAAA---CTTCCCACAGACCAATTTATTCAACATGAAAAAAAGAAATAAAAACATGTACA----------GCTCAGAAGCAGGCCATCGTGAGACAGCG-TAAATACACAAATCTGTCC---CATTAAAGTCATTTAAAACGTTCCAAATTCGGATTCGCCATCAATTCATGAGCGTG------G------ATGACCTTCGTAAATGTTGACACATTTATGAT-TT-AAAA--AT-TCGTAGACAAAAACCTTAACAATGACGTCAGCTTCGACACTGTGT-GGGTATTTCAGTGAATAATC-ATTTTTTTA-TTTATCCAAATCGGGAGATAAAAGGCGG-GTGTTTA---A--TGTTTT--CACCTCAAAATATTTCGTGATTTTACAATAAACCAACCATTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTTACGATAATATTGAATATCAGATCTAGTGAATTTAATGTCGCTCAGTACAAAGTTGTTGTTTTTCCTTCACGTTTACTTTGCGGCG-------------GCTAGTTTA-AATTTCCATTCACTTGA-----C-GAGC---AAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTTATATCAT---CAGGATTGGAATTATAAAGATT
gi|10 : TCAACGGAAATAAATTTCAATCTGGACTTTC-TTATTCA-----CTAACACAT-TCACTACAATA-TAATTCCAATCACATTATCATATATGTATTTAAAACATTTTGATTGGAC-ACATCAATTTTTTAAA-GACTTTT--ATTTTTAGATAAAA-CCCGTGAGCCGGACTTC---TTTTGCGTTTCTTGCGTAAAC
gi|16 : A-CAGTTACAATGTCACTTTCATTTATGTGTTTGAAGCTTTTCCAGAGCATAAGGCCAA---TTT-AT-GAC----------TTCGATAAAACCCCTTGAACCGGGCTACATTTTTTACGTT
gi|17 : ataTCGT---CAGGATTTGAATTTTAAGGATT
gi|18 : tattcctacgcacaaactatgcaacggattgtttaatggttcattcattcattttcatgtctgatactaaatttttttTTTTGCCTCAAAATTAAACTGA---CGTAAACAATACACCATCG----GATATTTGATATCAG
gi|2 : tgattttgcgtacatcacaaaccaaacgctgttgcaggtcggattGCGTAAACAAA-GAAGCATCGACATTTTGATGGTCGGT-TTAACA-ATT-ACGAACTTAAAT--GACATTTACAACGGTTCCACGCTTATTTTAATAATGAAATAAAAGGAAAACAAA----------TGTTAGATCTAGTCCTAGCTGATTTCTTCGGTTTATTGTTTTA----TAGATTTCT-TTTGTTCAGCGATTT-AACCGGGCGTCACAATCAGACC---ATAGGTTG----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCAGATTTGAGATGTTTAG-------------TGTACAATTGAACACAACCCTGGTTTACCGAACGTGAATGCAAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGATAGGAAAAATA-AAATAAAAACATGTACATGTAGTTGAAGTTCAGAGGCAGACGATCGTGAGACAATGTTAA-TACACAAACCT---TGCACGTTAAAGTCGTTTAAAACGCTCCAAATTCGGATTCTCCATC----AATGAGCGTG------GATTTATATGATCTTCGTAAATATTGACACATTT----T-TTAAAAACAATCGTGTAAACAAAAAC-TAAACAATGGCGTCAGTGTCTAAACTTTGT-GGGTATTTCCTGGAATTATTGATTTTTTTGTTTTTTTTAAATCGAGAGATAAAAAGCGG-GT-TTTG---A--TTTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACcta
gi|3 : TT-AACCGGGCGCCA--A--AGACCTTAA---GTAG----TTTTGAGGAAGAATGAAGTAGGTCATAAAATGTCCATATTTGAAATA--AATTGATACACTATCTTGTACCATTGAATA-GATCCTGGTTTACCGAACGTGAATGCTAGTCATTGAAAAAAA---AATCA-ATAG-CCAATTTATTCGACAGGAAAAAATGAAATAAAAACATGT--A--------AG---CATACACAAGCC-TTGC------ACG-TAA-T------------------GTAAAAGTCGTTTGGAACGTTTCTAATTCGGATTCTTTATCAATTAATGAGCGTGGAGTTAG------ATGACATTCGTAAATATTGACACATTTA-GATATC-TAAACATTGGTGTAGACAAAAAC-GAAACAATGACGTCAACTTCTACACTGTGC-GGATATATCATTGAATTATCG------------TGTCCAAATCAGGAGATAAAAGGCGG-GTGTTTA---AATTGTTTT----CCTCAAAACATTTCGTCATATTACAAAAAAACAACTTTTGTTGCAGAGTTCAGCTGGAAATGGAAACAATG-ACTGTTACGATAATGTTGAATATTAGATCTAGTGAATTTTATGTCAACCAGGACAAAAGTAATGTATTCC-TACATGTTTGCTCT--AGC-------------TGATAGATTA-AATTTCCATTCACTTGAGGAGTCTGAGC---AAATAAA
gi|4 : ACACTGTTTTGGGTATTTCGTGAAATTATCGATATTTCTA-TTTGTCCAGTTCGGGAGATAATAGGCGGTGTTTTTGTGTG--TGTTTTTTCACTTCAAAATATTTCGTCATTTCACAATAAACCAACTCTTGTTACAAAATTCAGCTGATAATGGAAACAATA-ACCGTCACGATATAATTGGATATAAGGTCTATTGAATGTAATGTCAACCAGGACAGAAGTGATGTATT-CTTACGCGTTTACTTTGCAGCG--TAAAGT--TTTGTTGTTTT----TTTTCATTCCTTTGAGGAGT------CTAAAATTAAaaaatatatacatca
gi|4 : ataatgaaaaataacaaATATATATATCATAATCAGGATTGGAATTATAAGGATTatatatatatcataatcaggattggaattataaggattatattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|5 : ataatgaaaaataacaaacactgttttgggtatttcgtgaaattatcgatatttctatttgtccagttcgggagataataggcggtgtttttgtgtgtgttttttcacttcaaaatatttcgtcatttcacaataaaccaactcttgttacaaaattcagctgataatggaaacaataaccgtcacgatataattggatataaggtctattgaatgtaatgtcaaccaggacagaagtgatgtattcttacgcgtttactttgcagcgtaaagttttgttgttttttttcattcctttgaggagtctaaaattaaTTACACCGGACTAC---------ATTTCTCCCGCAAA-----GAAGCATACACATTTTGCTGCTCGGTAC-AATG-ATTTACGAAC--GAATATGGCGTGCACCACGGTTCCACACTTA----AATA-TAA--AAATAG---AGCGAA----AATAGTTGTTAG--------CTA--T-------------TATTATTTT-----------TTT-GTTGTTCAGCG--------------CTACAAACAGAT-----------------------AGACAATGAAGTAGATCACAGGATGTTTACATTTGAGATG--TAGCAATACACGATCTTGTACCATTGA--ACGGTCCTGGTTTACCGGACGTGAATGCTAGTCGTTG-ACAAAGGTTTTTCC-atattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|6 : aaaaaattacgATATCGT---CAGGATTGGAATTATAAGGATTcc
gi|8 : tattcctacgcatttacctggcaaaggatattttaataatctattcatttactttactttaaaTTAAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAGCCCCTTGCGCCGGACTACT-TTTTTACGTTTCTCTCGTAAAC-AAAGAAGCATCGACATTTTGA----------------------------AAAT--GGCGTGCATAACGGTTCCACGCTTATTTTAATAATGA---AAAAT---AACAAACACTG-----TTTTGG--------GTA-----TTTCGTGAAATTATCG--ATA----T----TTCTATTTGTCCAGtttttctctgctgttatgcatgtgtaatgattgtcgaatcgcgtgcaaacattgcataaattcattcggacttattcgatttgtgcgtgtttcgacattcattacatatgcataaaaacaaaaagatggaatttattcccataataaaaagtttttttcattataattataatatttag
gi|9 : CTTACGCGTTTTCTTTGCAGCGTTT--AATTATTTTTTATTTTATTTTTTTCATTCACTTCAGGAGT------CTAAAATTAA
gi|9 : tTAAATGTA-ATCAT---CAGGATTGGAATTATAAGGATTatgtaatcatcaggattggaattataaggattaaattcatttttttctggtttttatgcatgtgtaaagaatgtcgaatcacgcacaaatctgacattaagtccttcggactcctataatgaaaaatatacgatcaata
blockSeqs : GG TC C G TC . C . A . T A T A . TTTT C ATT AAA T T G TTAACAATTACGAACTT AT A T AT AAT GGAA TGTTAGATCTAGTCCTAGCTGATTTCTTCGGT T ATAGAT A ATTT C T CATAGGTTG TT TTGA CT C AC C A GTTT . A G A TGTAGTTGAAGT G A TG T TACACAAACCTTGCA A GATTTAT AGATATC C C . T C G GATT GT T G TGTG TTC T A C C C T G G GTTTAATTATT A G ATTT G CTGAGC A T AAT
blockSeqs : . T A T . . TT C TT AAA T T C ACAATGATTTACGAAC . C T AT A G CACTGTTTTGGGTATTTCGTGAAA T AT . . C A CTTAAGTAG . GCAA CG C AT C . T . . . . AG C . C . T . GAGTTAG TTTA C G . . A T GATA A . T AAT C T T . C . T A G GTAAAGTTT T T AAA G CTA G T .
blockSeqs : T . . . . . . . . T . . . . A . T . T AATAGTTGTTAGCTAT . . . . . . . G . . . . . A . . G G G . . . A . C . . . . T . . T T . G CTA . .
blockSeqs : . .
blockSeqCons : T**
originalCons : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTGT-GGGTATTTCGTNGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTATTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
finalCons : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTGCGCCGGACTACT--TTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTGT-GGGTATTTCGTNGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTATTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTATGAAAACATACTGTTTTCGCAGACATAGATGTAGGTAACAGGATGTCCTTTTTTTTATTTTATAATTTGCGAGAAAACGATTCTTTTTTACTGAACATCAAATGCTTTCTATTGACATAAAGCATTTTATCCATTTGGCAAATATATTAGAAAGGAAATATAAAATACACATTTATAGTTTAAAATTCAAAAGAAGAACAAGGTCGTGAAATGTAAATAAACACACAGTGGAAGTCCGGAAACGTCCCGAA
Unaligned ( gi|11 ): CTTGGCTTTTATGCATGTGTAAATATATTGAATAATGTGCAAATTTACCTTACAGAAAATCTGACTTCGCACAATTGGTGTATGGTATCGCATTACTTATACATGCATAGAAGCCAAGAAAAAAAATGAAATTATTCCTATAATA
Unaligned ( gi|12 ): CGCTGACATAAAGTCCTTAGAACTTTTGTTGATTTGTGCGTTATTCAGCATTCTTTACAGCTGCATAAAAACCGGAAAAATGACTTTATCTTATAAAAATATATGTGTCCTTATAAGTTTATATTTA
Unaligned ( gi|13 ): TTCTGCGGCTATGATAAGTAAACAAAAACACATTTTGTACTTGTAATATCTTTTATTTCAAAATAAATAAACAACTGAATCACACACATGCTTAAATATTGGTATAATGAAAAACA
Unaligned ( gi|14 ): TAAGGATTAAATGTATTTTCTGCTGTTTATAAATGCAGGTGTGATATCAAATCAAGCATAGTTCTTTTGGACTGTATTCGATGTGTACGTGATTCTTTACATAAAAACAGA
Unaligned ( gi|15 ): TTAAATAATTAAATTTAATTTTTCTGAATTTTATGCATGTGTACAGAACGTTGAATCAAGCACTAATTTTTCATAAAGTTCTGTTTAAACCCAGGAAAAAAATGATAATAG
Unaligned ( gi|19 ): TTCGGATTTTATTCGATTTGTTGGTGATTCGACATTCGGTATACATGAATTTAATCCTATAATAAAA
Unaligned ( gi|20 ): TGCCGAATTACGCACAAACCTGACATAAAGTCCTTCAAATCATATGATG
Unaligned ( gi|21 ): GTAAAGAATATCAAATCACGCATAAATCTGTCATAAAGTC
Alignments
lowQualScore : 11 11 1 111 22222 1 1 1 1 1 222222 222 1111 55555555555555555555 11 222 1111 666666666666666666666666666666666666666666 4444444444 1 11111 6666666666666666 11 1 1111 1 666666666666 1 5555555555555555555 6666666666666 222222222 2 1 1 11 1 222222 111 1 1 7777777777777 2222 555555555 444444444444444444444444444444444444444444444 111
lowQualScore : 77 88 1 5 777 66666 1 5 5 3 3 0 3 3 0 0 777777 2 999 2222 3 3 2 00000000000000000000 33 1 3 0 66 333 8888 111111111111111111111111111111111111111111 3 2222222222 0 00000 0 2 9 9999999999999999 0 33 7777 55 2 33 6 0 8888 0 7 6 7 999999999999 1 7 77 3 5555555555555555555 7 6666666666666 222222222 6 6 0 3 0 4 1 6666 0 00 0 0 8 666666 666 1 0 9 0 2 0 0 2 7 1 2 1111111111111 1 1 0000 2 666666666 555555555555555555555555555555555555555555555 1 3 444
lowQualScore : .. .. . . ... ..... . . . . . . . . . . ...... . ... .... . . . .................... .. . . . .. ... .... .......................................... . .......... . ..... . . . ................ . .. .... .. . .. . . .... . . . . ............ . . .. . ................... . ............. ......... . . . . . . . .... . .. . . . ...... ... . . . . . . . . . . . ............. . . .... . ......... ............................................. . . ...
lowQualScore : 55 00 0 0 000 55555 0 0 5 3 2 2 2 2 0 0 888888 5 666 5555 2 2 5 55555555555555555555 88 0 2 8 55 555 5555 555555555555555555555555555555555555555555 2 8888888888 0 33333 2 5 8 2222222222222222 8 88 8888 55 5 55 5 0 8888 0 3 7 3 777777777777 0 3 33 3 7777777777777777777 3 7777777777777 777777777 7 7 7 3 0 2 0 2222 8 88 2 0 8 000000 222 2 2 8 0 5 2 7 0 0 2 5 5555555555555 2 0 2222 5 555555555 000000000000000000000000000000000000000000000 0 2 000
consensus : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTGT-GGGTATTTCGTNGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTATTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
Reference ( family-1580 ) : TCAACGGAAACAAACTTCAATNTGGACTTNNGTTATTCAAGCAACTGANACATGTCACTACAACA-TAATTCCAATCTCACTTTCATATATGTATTTGAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAACCCCTTGCGCCGGACTAC--TTTTTACGTTTCTCGCGTAAACAAAAGAAGCATCGACATTTTGATGGTCGGT-C-AATA-ATT-ACGAAC--AAAT--GGCGTGCACNACGGTTCCACGCTTATTTTAATAATGA--TAAAAN---AACAAA----A-----TGTTAG--------CTA--TG-TTTCTTCGGTTTATTGTTTTA----T----TTCT-TTTGTTCAGCGATTT-AACCGGGCGCCACAATCAGACC---A---GT-G----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCATATTTGAGATG--TAGCGATACACTATCTTGTACCATTGAACACGACCCTGGTTTACCGAACGTGAATGCTAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGACAGGAAAAAAAGAAATAAAAACATGTACA--------AGGCTCAGANGCAGGCCATCGCGAGACAACG-TAA-TACACAAACCT---C---CGTTAAAGTCGTTTAAAACGTTCCAAATTCGGATTCTCCATCAATTAATGAGCGTG------G------ATGACCTTCGTAAATATTGACACATTTA-GAT-TT-AAAACAAT-GCGTAGACAAAAAC-TAAACAATGACGTCAGCTTCTACACTGTGT-GGGTATTTCGTNGAATTATCGATTTTTTTA-TTTGTCCAAATCGGGAGATAAAAGGCGG-GTGTTTG---A--TGTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACTTTTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTCACGATAATATTGGATATCAGATCTAGTGAATTTAATGTCGACCAGGACAAAAGTGATGTATTCCTTACGCGTTTACTTTGCAGCG--T--AGT--TTTGTTANTTTA-AATTTCCATTCACTTGAGGAGTC-GAGCCTAAAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATNTATATCGT---CAGGATTGGAATTATAAGGATT
gi|1 : TCAAC--AAACAAACT--AATGTG-ACTTGGGTTATTTAAGCAATTGAAATATGTCACT-TAACAATAATTCCAATCTCACTTTCATATATGTATT-GAATCATTTTCATTGGACAACATCAATTTTTT-AAAGAC--TTTTATTTTTCGATAAAACCCCTGGCGCGGGACTAC--TTTTTACGTTATTCGTGTTAACAAAAAAAGTA-CGACATTTTGATGGTCGGTTC-AATATAAT-ACGAACGAAAAT--GACGTGCACCACGGCTCGGCGCTTTTTTCAATAA-GA--TACAAC---AACAAA----A-----TGTTAG--------CTA--TG-TTTATTTGGTTTATTGTTTTAATGAT----TTCT-TTGGTTCAGCGATTTTAATCGGGCGCCACAATCAGACC---A---AT-GGTTGTTTTGAGAAACAATGAAAAGGGTTATAAACTATTTATATTTGAGATG--TAACGGTACAATATATTGAACCACTGAACATAACCCTGGTCTACCGAACGTGATTGCTAGTCGTTT-ACAAAA---CTTCCCACAGACCAATTTATTCAACATGAAAAAAAGAAATAAAAACATGTACA----------GCTCAGAAGCAGGCCATCGTGAGACAGCG-TAAATACACAAATCTGTCC---CATTAAAGTCATTTAAAACGTTCCAAATTCGGATTCGCCATCAATTCATGAGCGTG------G------ATGACCTTCGTAAATGTTGACACATTTATGAT-TT-AAAA--AT-TCGTAGACAAAAACCTTAACAATGACGTCAGCTTCGACACTGTGT-GGGTATTTCAGTGAATAATC-ATTTTTTTA-TTTATCCAAATCGGGAGATAAAAGGCGG-GTGTTTA---A--TGTTTT--CACCTCAAAATATTTCGTGATTTTACAATAAACCAACCATTGTTGCAGAGTTCAGCTGATAACGGAAACAATA-ACCGTTACGATAATATTGAATATCAGATCTAGTGAATTTAATGTCGCTCAGTACAAAGTTGTTGTTTTTCCTTCACGTTTACTTTGCGGCG-------------GCTAGTTTA-AATTTCCATTCACTTGA-----C-GAGC---AAATTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTTATATCAT---CAGGATTGGAATTATAAAGATT
gi|10 : TCAACGGAAATAAATTTCAATCTGGACTTTC-TTATTCA-----CTAACACAT-TCACTACAATA-TAATTCCAATCACATTATCATATATGTATTTAAAACATTTTGATTGGAC-ACATCAATTTTTTAAA-GACTTTT--ATTTTTAGATAAAA-CCCGTGAGCCGGACTTC---TTTTGCGTTTCTTGCGTAAAC
gi|16 : A-CAGTTACAATGTCACTTTCATTTATGTGTTTGAAGCTTTTCCAGAGCATAAGGCCAA---TTT-AT-GAC----------TTCGATAAAACCCCTTGAACCGGGCTACATTTTTTACGTT
gi|17 : ataTCGT---CAGGATTTGAATTTTAAGGATT
gi|18 : tattcctacgcacaaactatgcaacggattgtttaatggttcattcattcattttcatgtctgatactaaatttttttTTTTGCCTCAAAATTAAACTGA---CGTAAACAATACACCATCG----GATATTTGATATCAG
gi|2 : tgattttgcgtacatcacaaaccaaacgctgttgcaggtcggattGCGTAAACAAA-GAAGCATCGACATTTTGATGGTCGGT-TTAACA-ATT-ACGAACTTAAAT--GACATTTACAACGGTTCCACGCTTATTTTAATAATGAAATAAAAGGAAAACAAA----------TGTTAGATCTAGTCCTAGCTGATTTCTTCGGTTTATTGTTTTA----TAGATTTCT-TTTGTTCAGCGATTT-AACCGGGCGTCACAATCAGACC---ATAGGTTG----TTTTGAGAAACAATGAAGTAGGTCATAAAATGTTCAGATTTGAGATGTTTAG-------------TGTACAATTGAACACAACCCTGGTTTACCGAACGTGAATGCAAGTCGTTG-ACAAAA---TTTCC-ACAGACCAATTTATTCGATAGGAAAAATA-AAATAAAAACATGTACATGTAGTTGAAGTTCAGAGGCAGACGATCGTGAGACAATGTTAA-TACACAAACCT---TGCACGTTAAAGTCGTTTAAAACGCTCCAAATTCGGATTCTCCATC----AATGAGCGTG------GATTTATATGATCTTCGTAAATATTGACACATTT----T-TTAAAAACAATCGTGTAAACAAAAAC-TAAACAATGGCGTCAGTGTCTAAACTTTGT-GGGTATTTCCTGGAATTATTGATTTTTTTGTTTTTTTTAAATCGAGAGATAAAAAGCGG-GT-TTTG---A--TTTTTT--CACCTCAAAATATTTCGTCATTTTACAATAAACCAACcta
gi|3 : TT-AACCGGGCGCCA--A--AGACCTTAA---GTAG----TTTTGAGGAAGAATGAAGTAGGTCATAAAATGTCCATATTTGAAATA--AATTGATACACTATCTTGTACCATTGAATA-GATCCTGGTTTACCGAACGTGAATGCTAGTCATTGAAAAAAA---AATCA-ATAG-CCAATTTATTCGACAGGAAAAAATGAAATAAAAACATGT--A--------AG---CATACACAAGCC-TTGC------ACG-TAA-T------------------GTAAAAGTCGTTTGGAACGTTTCTAATTCGGATTCTTTATCAATTAATGAGCGTGGAGTTAG------ATGACATTCGTAAATATTGACACATTTA-GATATC-TAAACATTGGTGTAGACAAAAAC-GAAACAATGACGTCAACTTCTACACTGTGC-GGATATATCATTGAATTATCG------------TGTCCAAATCAGGAGATAAAAGGCGG-GTGTTTA---AATTGTTTT----CCTCAAAACATTTCGTCATATTACAAAAAAACAACTTTTGTTGCAGAGTTCAGCTGGAAATGGAAACAATG-ACTGTTACGATAATGTTGAATATTAGATCTAGTGAATTTTATGTCAACCAGGACAAAAGTAATGTATTCC-TACATGTTTGCTCT--AGC-------------TGATAGATTA-AATTTCCATTCACTTGAGGAGTCTGAGC---AAATAAA
gi|4 : ACACTGTTTTGGGTATTTCGTGAAATTATCGATATTTCTA-TTTGTCCAGTTCGGGAGATAATAGGCGGTGTTTTTGTGTG--TGTTTTTTCACTTCAAAATATTTCGTCATTTCACAATAAACCAACTCTTGTTACAAAATTCAGCTGATAATGGAAACAATA-ACCGTCACGATATAATTGGATATAAGGTCTATTGAATGTAATGTCAACCAGGACAGAAGTGATGTATT-CTTACGCGTTTACTTTGCAGCG--TAAAGT--TTTGTTGTTTT----TTTTCATTCCTTTGAGGAGT------CTAAAATTAAaaaatatatacatca
gi|4 : ataatgaaaaataacaaATATATATATCATAATCAGGATTGGAATTATAAGGATTatatatatatcataatcaggattggaattataaggattatattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|5 : ataatgaaaaataacaaacactgttttgggtatttcgtgaaattatcgatatttctatttgtccagttcgggagataataggcggtgtttttgtgtgtgttttttcacttcaaaatatttcgtcatttcacaataaaccaactcttgttacaaaattcagctgataatggaaacaataaccgtcacgatataattggatataaggtctattgaatgtaatgtcaaccaggacagaagtgatgtattcttacgcgtttactttgcagcgtaaagttttgttgttttttttcattcctttgaggagtctaaaattaaTTACACCGGACTAC---------ATTTCTCCCGCAAA-----GAAGCATACACATTTTGCTGCTCGGTAC-AATG-ATTTACGAAC--GAATATGGCGTGCACCACGGTTCCACACTTA----AATA-TAA--AAATAG---AGCGAA----AATAGTTGTTAG--------CTA--T-------------TATTATTTT-----------TTT-GTTGTTCAGCG--------------CTACAAACAGAT-----------------------AGACAATGAAGTAGATCACAGGATGTTTACATTTGAGATG--TAGCAATACACGATCTTGTACCATTGA--ACGGTCCTGGTTTACCGGACGTGAATGCTAGTCGTTG-ACAAAGGTTTTTCC-atattctttttttctgcttttatgtatatgtaaagaatgtcgaatcacgcccaaatttg
gi|6 : aaaaaattacgATATCGT---CAGGATTGGAATTATAAGGATTcc
gi|8 : tattcctacgcatttacctggcaaaggatattttaataatctattcatttactttactttaaaTTAAAGCATTTTCATTGGACAACGTCAATTTTTT-AA-GAC--TT--ATTTTTCGATAAAGCCCCTTGCGCCGGACTACT-TTTTTACGTTTCTCTCGTAAAC-AAAGAAGCATCGACATTTTGA----------------------------AAAT--GGCGTGCATAACGGTTCCACGCTTATTTTAATAATGA---AAAAT---AACAAACACTG-----TTTTGG--------GTA-----TTTCGTGAAATTATCG--ATA----T----TTCTATTTGTCCAGtttttctctgctgttatgcatgtgtaatgattgtcgaatcgcgtgcaaacattgcataaattcattcggacttattcgatttgtgcgtgtttcgacattcattacatatgcataaaaacaaaaagatggaatttattcccataataaaaagtttttttcattataattataatatttag
gi|9 : CTTACGCGTTTTCTTTGCAGCGTTT--AATTATTTTTTATTTTATTTTTTTCATTCACTTCAGGAGT------CTAAAATTAA
gi|9 : tTAAATGTA-ATCAT---CAGGATTGGAATTATAAGGATTatgtaatcatcaggattggaattataaggattaaattcatttttttctggtttttatgcatgtgtaaagaatgtcgaatcacgcacaaatctgacattaagtccttcggactcctataatgaaaaatatacgatcaata
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): ACTATGAAAACATACTGTTTTCGCAGACATAGATGTAGGTAACAGGATGTCCTTTTTTTTATTTTATAATTTGCGAGAAAACGATTCTTTTTTACTGAACATCAAATGCTTTCTATTGACATAAAGCATTTTATCCATTTGGCAAATATATTAGAAAGGAAATATAAAATACACATTTATAGTTTAAAATTCAAAAGAAGAACAAGGTCGTGAAATGTAAATAAACACACAGTGGAAGTCCGGAAACGTCCCGAA
Unaligned ( gi|11 ): CTTGGCTTTTATGCATGTGTAAATATATTGAATAATGTGCAAATTTACCTTACAGAAAATCTGACTTCGCACAATTGGTGTATGGTATCGCATTACTTATACATGCATAGAAGCCAAGAAAAAAAATGAAATTATTCCTATAATA
Unaligned ( gi|12 ): CGCTGACATAAAGTCCTTAGAACTTTTGTTGATTTGTGCGTTATTCAGCATTCTTTACAGCTGCATAAAAACCGGAAAAATGACTTTATCTTATAAAAATATATGTGTCCTTATAAGTTTATATTTA
Unaligned ( gi|13 ): TTCTGCGGCTATGATAAGTAAACAAAAACACATTTTGTACTTGTAATATCTTTTATTTCAAAATAAATAAACAACTGAATCACACACATGCTTAAATATTGGTATAATGAAAAACA
Unaligned ( gi|14 ): TAAGGATTAAATGTATTTTCTGCTGTTTATAAATGCAGGTGTGATATCAAATCAAGCATAGTTCTTTTGGACTGTATTCGATGTGTACGTGATTCTTTACATAAAAACAGA
Unaligned ( gi|15 ): TTAAATAATTAAATTTAATTTTTCTGAATTTTATGCATGTGTACAGAACGTTGAATCAAGCACTAATTTTTCATAAAGTTCTGTTTAAACCCAGGAAAAAAATGATAATAG
Unaligned ( gi|19 ): TTCGGATTTTATTCGATTTGTTGGTGATTCGACATTCGGTATACATGAATTTAATCCTATAATAAAA
Unaligned ( gi|20 ): TGCCGAATTACGCACAAACCTGACATAAAGTCCTTCAAATCATATGATG
Unaligned ( gi|21 ): GTAAAGAATATCAAATCACGCATAAATCTGTCATAAAGTC