lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2 222222222 111111 222 111 11111 5555555555555555555555555 111 44444444444444444444444444444444444444444444444444444444444444444444444444444 1
lowQualScore : 3 0 1 66 555555555 333333 55 6 2 888 444 444 444 444 99999 2 6666666666666666666666666 7 3 3 2 6 2 5 4 000 77777777777777777777777777777777777777777777777777777777777777777777777777777 3 3
lowQualScore : . . . .. ......... ...... .. . . ... ... ... ... ... ..... . ......................... . . . . . . . . ... ............................................................................. . .
lowQualScore : 8 4 6 11 222222222 555555 55 0 7 000 777 777 000 777 44444 9 7777777777777777777777777 5 1 1 9 2 9 4 9 000 00000000000000000000000000000000000000000000000000000000000000000000000000000 6 0
consensus : TAAATAGCCGACGTCTATTTACACATTTAATGAAAACT--GATTTT--------TACAT----AATACT--GGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA-GTT---G---TTG---GT---TGAAGGAAAGACGTAGTATTGGAT----CT-AGAGCGA-CTT--TTTATGTA----------CATGTAGAATAA-AA-AAACAA-AACAAGGGATGTTAA-GAACGTCTAAGCAAATGACGATAACCATGATGG---TGATGAAAACAATAT------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( gi|3 ) : TAAATAGCCGACGTCTATTAACATATTTAATGAAAACT--GATTTT--------AACAT----ACTACT--GGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---T---G---TTG---GT---TGAAGGAAAGACGTAGTATTGGAT----AT-AGAGCGA-TTTAGTTTATGTA----------CATGTAGAACAA-AA-AAACAA-AATAAGGGATGTTAA-GAACATCCAAGCAAATGACGATAACCATGATGG---TGATGAAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTG-CTTTTTTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAACT--GATTTT--------AACAT----ATT-----GGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAA---T---G---TTGTTGGT---TAAAGGAAAGACGTATTATTGGAT----CT-AGAGCGACTTTA----ATGTA----------CATGTAGAATAA-AAAAAACAA-AAGAAGGGATTTTAA-GAACTTCTAAGCAAATGACGATAACCGTGATGG---TGATTAAAAC
gi|5 : cgtgAAATAGCCAACATCTATTTACACATTTAATGAAAACT--GATTTT--------TACGT----AATACT--AGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTT---G---TTG---GT---TGAAGGAAAGACGTAGTATTGGAT----CT-AGAGCGA-CT---TTTATGTA----------CATGTAGAATAA-AA-CAACAA-AATAAGGGATGTTAA-GAACGTCTAAGCAAATGGTTATAACC---ATGG---TGATGAAAACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|2 : agcAAATAGCCGACGTCTATTTACATATT-AATGAAAACT--GATTAT--------TACAT----AATACT--GGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTT---G---TTG---GT---TGAAGGAAAGACGTAGTATTGGAT----CT-AGAGCGA-CT---TTTATGTATAAATAAAATTATGTAGAAT----A-AAACAA-AAC--GGGATGTTAA-GAACGTCTAAGCAAATnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgatgatgttgatattttgcttttttattacaataatgttgatcacgatctagtaagggacctctatgtggaatgtttgtcgactggc
gi|7 : tgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAA---T---G---TTG---TT---TGCTGGAACGACGCAGTATTGGAT----CT-AGAGCGA-CTT--TT-----------------ATGTAGAATAA-AA-AAACGATAAAAAGGGATGTAAA-GAACATCTAAGCAAATGACAATAACCATGATGATACTGATGAannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|6 : gcttgcAAATAGCCAACGTCTATTT-CAT---TATTGAAAACA--CAGGTT--------A-CAT----AATACT--GGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTT---G---TTG---GT---TTAAGGAAAGATGTAGTATTGGAT----CT-AGAGCGA-CTT--TT-----------------ATGCAGAATAA-AA-AAACAA-AACA----ATGATAA-GAACGTCTAAGTAAATGACGATAACCAcggtgatgatgatattttgcttttttattacgatgatgttgatctagtaagggacctttattcggaacaattgtcggctggc
gi|18 : cacgcAAATAGCCGACATCTATTTACACATTTAATGAAAACT--GATTTT--------TACAT----AATACT--GGTGATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgtttttttatgatgatattgatcacgatctaataatggacctttactcgaaacgtttgtcgactggc
gi|4 : atgcAGCAGACGTCTATTAACACATT-AATGAAAGCT--GATTTT--------TATAT----AATAAT--AATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTT---G---TTG---GT---TGAAGGAAAGACGTAGTATTGGAT----CT-AGAGCCA-CTT--TTTATGTA----------CATGTAGAATAA-AA-AAACAA-AAGAAGGGATGTTAA-GAACGCCTTAGC-AATGACGATAACCATGATGG---TGATGAAAACAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAAT--GATTTT--------TATAT----CATACT--GGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---T---G---TTG---GT---TGAAGGAAAGACATAGTATTGGAT----CT-AGAGCGA-
gi|13 : aAACT--GATTTT--------TAAGT----AATACT--GGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAA---C---GTTATTG---GT---TCAAGGAAcgtt
gi|8 : aggttttttcctTTTT--------TACAT----AATACT--GGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTT---G---TTG---GT---TGAAGAAAAGAAGTAGTACTGGAT----CT-AGAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|12 : ctatCATAGAGAACAGAAATATG-ATAAAATTAAAA---T---G---TTGTTGGT---TGAAGGAAAGGCGTAGTACTAGAT----CT-AGTGCGA-C---GTTTATGTA----------CATGTAAAATAA-AA--AACAA-AATAAGGGATGTTAA-GAACTTCTAAGCAAtctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|10 : ATAGAGAATAGAAATATG-ATCAAATTTAAA---TATTG---CTG---GT---TGAAGGAAAGACGTAGGATTGGAT----CT-AGAGCGG-CTT---TTATTTA----------CATGTAGAATAA-AA-AAACAA-AATAAGTGATGTTAA-GAACGTCTAAGCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|11 : ATTGAGAATAGAAATATC-AGTAAATTAAAA---C---G---TTG---GT----GGTTGAAAGAAGTAGTACTGGAT----CC-AGAG-----TTACTTT---------------TATGTAGAAGAATAA-AAACTA-AA---GGGATGTTAA-GAACATCCAAGCAAATGACGATAACCATTATGA---TGATGAAAACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|9 : TAGAGAATAGAAATATG-AATAAACTAAAACGTT---G---TTG---GT---CGAAGGAAAGA---------------------GAGTGA-CTT---TTATGTA----------------GAATAA-AA-AAACAA-AACAAGAGATGTTAA-GAACGTCTTAGCAAATGACGATAACCATGATGA---TGATAAAAA------------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTG-CTTTTTAATTACGATAATGTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGGatgctgctgctgctaaggatgatgatggtgatgatgatggtgatgatattttgcttttttattacaatgatgttgatcacgatctagtaaaggaccattatgcggaacgtttgccgactggc
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAA---T---G---TTGTTGGT---TGAAG-----ACGTAGTATTGGAT----CT-AGAGCGA-CTT---TTATGTA----------CATGTCGAAGAA-AA-AAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGA---TGATTAAAACA
gi|14 : AACATGCATTAA-TTAAAA---C---G---TTG---GTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGA-C-------ATTTA----------AATATA--ATAA-CA-AAACAC-AACAAGGGGTGTTAA-AAACGTTTTAGTAAATGACGATAACCatgatgacggtgatgatgagagtgatgatgatattttgctttttaattacaatgatgttgatcacgatctagtaagggacctttatgcggaacgtttgtcg
gi|13 : A-AG-GAACAA-AACAAGGGAAGTTAA-GAACGTCTTAGCAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttattttgcttttctattacgatgaggttgatctagtaaggaacctttattcggaacgtttgtgaactggc
gi|8 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcA-AATAAGGGATGTTAA-GAACGTCTAAGCAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|5 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctATTTTG-CTTTTTTATTACAATAATGTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|1 : agcaaatagccaacatctatttacacatttaatgaaaactgatttttacgtaatactagtgatatttcatagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtacatgtagaataaaacaacaaaataagggatgttaagaacgtctaagcaaatggttataaccatggtgatgaaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncagtgatgatgttgatATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGC
gi|2 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATTTTC-CATTATTATTACGATCATGTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCt
gi|15 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTG-CTTTTTAATTACAATGATGTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|7 : tagagaatagaaatatgatcaaattaaaatgttgttggttgaagacgtagtattggatctagagcgacttttatgtacatgtcgaagaaaaaaacaaaacaaggtatgttaaagaatgtctaagcaactgacgataaccatgatgatgattaaaacaatgatgacggtgatgatgagagtgatgatgatATTTTG-CTTTTTTATTACGATGATGTTGATC------TAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGC
gi|6 : gcttgcaaataaccagtctatttacatattattgaaaacgcaggttttcccttactgacatttacacaattcaggtgatatttcatagagaatagaaatatgagtaagttaaaatgttgtttgctggaacgacgcagtattggatctagagcgacttttatgtagaataaaaaaacgataaaaagggatgtaaagaacatctaagcaaatgacaataaccatgatgatactgatgacggtgatgatgatATTTTG-TTTTTTTAT---GATGATATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|11 : cacgcaaatagccaacgtctatttcattattgaaaacacaggttacataatactggtgatatttcctagagaatggaaatatgagtatattaaaatgttgttggtttaaggaaagatgtagtattggatctagagcgacttttatgcagaataaaaaaacaaaacaatgataagaacgtctaagtaaatgacgataaccagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTTTG-CTTTTTTATTACAATGATGTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|14 : attgagaatagaaatatcagtaaattaaaacgttggtggttgaaagaagtagtactggatccagagttacttttatgtagaagaataaaaactaaagggatgttaagaacatccaagcaaatgacgataaccattatgatgatgaaaacaatgctgctgctgctaaggatgatgatggtgatgatgatggtgatgatATTTTG-CTTTTCTATTACGATGAGGTTGATC------TAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|12 : aacatgcattaattaaaacgttggtggttgaagaacatatgttgtattggattaatattaaagtgacatttaaatataataacaaaacacaacaaggggtgttaaaaacgttttagtaaatgacgataaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntt-CTTTTTTATTACTGTGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGC
gi|17 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttTTTTTTATTACGATGACGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|20 : tctgATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|10 : cgCTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGC
gi|21 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|8 : GGGACTTCTATACGGAAAGTTTGTCAACTGGC
gi|13 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGGACCTTTATGCGGAACATGTGTCGACTGGC
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 2222222222222222 33 1 22222222222222222 33333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 3 6666666666666666 0 2 22 66666 3 33 77777777777777777 2 2 2 4 2 0 777 99999999999999999999999999999999999999999999999999999999999999999999999999999999999 3
lowQualScore : . ................ . . .. ..... . .. ................. . . . . . . ... ................................................................................... .
lowQualScore : 7 5555555555555555 2 5 99 77777 8 77 33333333333333333 9 7 7 3 7 8 888 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 3
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAACGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGG---TGATGAAAACA------ATAT------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGATGTTGATATTTTGCNNNNNNNNNNNATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA-GTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGG---TGATGAAAACA------ATAT------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGG---TGATTAAAAC
gi|1 : cgtgATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGCTT--TT-ATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGA---TGATGAAAACA------AT
gi|11 : ATTTTG-CTTTTTTATTACAATGATGTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGCgctgctgctgctaaggatgatgatggtgatgatgatggtgatgatattttgcttttttattacaatgatgttgatcacgatctagtaaaggaccattatgcggaacgtttgccgactggc
gi|12 : attgagaatagaaatatcagtaaattaaaacgttggtggttgaaagaagtagtactggatccagagttacttttatgtagaagaataaaaactaaagggatgttaagaacatccaagcaaatgacgataaccattatgatgatgaaaacaatgctgctgctgctaaggatgatgatggtgatgatgatggtgatgatCATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : -CTTTTTTATTACTGTGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACC
gi|14 : ATTTTG-CTTTTCTATTACGATGAGGTTGATC------TAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttattttgcttttctattacgatgaggttgatctagtaaggaacctttattcggaacgtttgtgaactggc
gi|15 : aacatgcattaattaaaacgttggtggttgaagaacatatgttgtattggattaatattaaagtgacatttaaatataataacaaaacacaacaaggggtgttaaaaacgttttagtaaatgacgataaccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttTAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGA---TGATTAAAACA------AT
gi|15 : ATTTTG-CTTTTTAATTACAATGATGTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCGgatgacggtgatgatgagagtgatgatgatattttgctttttaattacaatgatgttgatcacgatctagtaagggacctttatgcggaacgtttgtcg
gi|16 : tagagaatagaaatatgatcaaattaaaatgttgttggttgaagacgtagtattggatctagagcgacttttatgtacatgtcgaagaaaaaaacaaaacaaggtatgttaaagaatgtctaagcaactgacgataaccatgatgatgattaaaacaatgatgacggtgatgatgagagtgatgatgatAGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : aTTTTTTATTACGATGACGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgcATTTTC-CATTATTATTACGATCATGTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGG---TGATGAAAACANNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTG-CTTTTTTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|4 : AGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGG---TGATGAAAACA------ATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGG
gi|5 : AAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGG---TGATGAAAACA------NNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGATGTTGATATTTTGC------------TTT----TTTATTA---CAATAATGTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACAA----TGAT-AAGAACGTCTAAGTAAA---------------------TGACGATAACC------AGNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTG-TTTTTTTAT---GATGATATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAA---TGTTGTTTGCTGGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTGATGA
gi|7 : gcttgcATTTTG-CTTTTTTATTACGATGATGTTGATC------TAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGCcggtgatgatgatattttgcttttttattacgatgatgttgatctagtaagggacctttattcggaacaattgtcggctggc
gi|8 : gcttgcaaataaccagtctatttacatattattgaaaacgcaggttttcccttactgacatttacacaattcaggtgatatttcatagagaatagaaatatgagtaagttaaaatgttgtttgctggaacgacgcagtattggatctagagcgacttttatgtagaataaaaaaacgataaaaagggatgtaaagaacatctaagcaaatgacaataaccatgatgatactgatgacggtgatgatgatTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGA---TGATAAAAA------------------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTG-CTTTTTAATTACGATAATGTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 1 2222222222222222 22222222222222222222222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 3 6666666666666666 0 2 6 66666 66666666666666666666666 2 2 2 4 2 777 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3
lowQualScore : . ................ . . . ..... ....................... . . . . . ... ....................................................................................... .
lowQualScore : 3 5555555555555555 2 5 2 77777 77777777777777777777777 9 7 7 3 7 000 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGG---TGATGAAAACA------AT-AT------AANGGNGGNTGTNANNGNCANNNANGNNGATGGCAGTGATGATGNTGATATT--TT--------------ATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAACGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGG---TGATGAAAACA------AT-AT------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGATGTTGATATT--TTGCNNNNNNNNNNN-ATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGG---TGATTAAAAC
gi|1 : cgtg-ATTTTG-CTTTTTTATTACGATGATGTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T--TTTATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGA---TGATGAAAACA------AT----------------GCTGCTGCTGCTAAGGATGATGATGGTGATGATGATGGTGAT-----------------GAT-ATTTTG-CTTTTTTATTACAATGATGTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : -CTTTTTTATTACTGTGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACCNNNNNNN---NNNNNNNNNNN------NN-NN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT---TATT--TT-------------------G-CTTTTCTATTACGATGAGGTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGA---TGATTAAAACA------ATGAT------GACGGTGATGATGAG-------------------AGTGATGA---TGATAT---------------------TTTG-CTTTTTAATTACAATGATGTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : aTTTTTTATTACGATGACGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgc-ATTTTC-CATTATTATTACGATCATGTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGG---TGATGAAAACANNNNNNNN-NN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-ATTTTG-CTTTTTTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|4 : AGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGG---TGATGAAAACA------AT-ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-ATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGG
gi|5 : AAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGG---TGATGAAAACA------NN-NN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGATGTTGAT---------------------ATTTTG-CTTTTTTATTACAATAATGTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACA----ATGAT-AAGAACGTCTAAGTAAATGACGATAACCAGNNNNN---NNNNNNNNNNN------NN-NN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT--TTG---------------------TTTTT--TTATGATGATATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTGATGA
gi|7 : gcttgcATAAAAAAA------CG-AT------AAAAAGGGATGTAAAGAACATCTAAGCAAATGACAATAACCATGATGATACTGATGACGGTGATGATGATATTTTG-CTTTTTTATTACGATGATGTT------GATCTAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGCcggtgatgatgatattttgcttttttattacgatgatgttgatctagtaagggacctttattcggaacaattgtcggctggc
gi|8 : gcttgcaaataaccagtctatttacatattattgaaaacgcaggttttcccttactgacatttacacaattcaggtgatatttcatagagaatagaaatatgagtaagttaaaatgttgtttgctggaacgacgcagtattggatctagagcgacttttatgtagaTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGA---TGATAAAAA-------------------AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNN-ATATTG-CTTTTTAATTACGATAATGTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 1 2222222222222222 22222222222222222222222 1111111 888888888888888888888888888888888888888888888888888888888888888888888888 3333333333333 1111 111
lowQualScore : 3 6666666666666666 0 2 66666 66666666666666666666666 2 2 2 4 2 33 777 3333333 666666666666666666666666666666666666666666666666666666666666666666666666 3333333333333 1111 000
lowQualScore : . ................ . . ..... ....................... . . . . . .. ... ....... ........................................................................ ............. .... ...
lowQualScore : 3 5555555555555555 2 5 77777 77777777777777777777777 9 7 7 3 7 00 000 0000000 999999999999999999999999999999999999999999999999999999999999999999999999 8888888888888 9999 888
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGG---TGATGAAAA-------CAAT-ATGANGGNNGNTGCNGNNGNCANNNATGATGATGACGGT---------------GATGATGGTGAT-ATGNTATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGG---TGATGAAAA-------CAAT-ATAANGGNGGNTGTNANNGNCANNNANGNNGATGGCAGT---------------GATGATGNTGAT-ATTTTATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGG---TGATTAAAA-------C
gi|1 : cgtgATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T--TTTATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGA---TGATGAAAA-------CAAT----------GCTGCTGCTGCTAAGGATGATGATGGTGAT---------------GATGATGGTGATGAT---ATTTTGC-------------TTTT----TTATTACAATGAT---GTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : C-------------TTTT----TTATTACTGTGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACC-----------NNNNNNNN-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNN-NNNTTATTTTGC-------------TTTT----CTATTACGATGAG---GTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGA---TGATTAAAA-------CAATGATGACGG-------------------TGATGATGAGAGT---------------GATGATGA---------TATTTTGC-------------TTTT----TAATTACAATGAT---GTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : a-------------TTTT----TTATTACGATGAC---GTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgcATTTTCC-------------ATTA----TTATTACGATCAT---GTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTG---GTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGG---TGATGAAAA-------CANN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNATTTTGCT-TTTTTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|4 : AGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGG---TGATGAAAA-------CAAT-ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGG
gi|5 : AAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGG---TGATGAAAA-------CANN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGT---------------GATGATGTTGA------TATTTTGC-------------TTTT----TTATTACAATAAT---GTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACA----ATGAT-AAGAACGTCTAAGTAAATGACGATAACCA-----G---NNNNNNNNN-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNN-NNNNNATTTTGT-------------TTTT----TTAT---GATGAT---ATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTGATGA
gi|7 : gcttgcAAAA-------CGAT-AAAAAGG--GATGTAAAGAACATCTAAGCAAATGACAATAACCATGATGATACTGATGACGGTGATGATGATATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATC------TAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGCcggtgatgatgatattttgcttttttattacgatgatgttgatctagtaagggacctttattcggaacaattgtcggctggc
gi|8 : gcttgcaaataaccagtctatttacatattattgaaaacgcaggttttcccttactgacatttacacaattcaggtgatatttcatagagaatagaaatatgagtaagttaaaatgttgtttgctggaacgacgcagtattggatctagagcgacttttatgtagaataaaTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGA---TGATAAAAAAANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------NNNNNNNNNNNN-NNNNNATATTGC-------------TTTT----TAATTACGATAAT---GTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 1 2222222222222222 1 22222222222222222 1111111 55555555555555555555555555 111111111 3333333333333 1111 111
lowQualScore : 3 6666666666666666 0 2 66666 3 33 77777777777777777 2 2 2 4 2 33 3333333 11111111111111111111111111 0 3 888 888888888 2 3333333333333 1111 000
lowQualScore : . ................ . . ..... . .. ................. . . . . . .. ....... .......................... . . ... ......... . ............. .... ...
lowQualScore : 3 5555555555555555 2 5 77777 8 77 33333333333333333 9 7 7 3 7 00 0000000 77777777777777777777777777 1 1 333 000000000 6 8888888888888 9999 888
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTTAA-GAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA-------CAAT-ATGACGGNNGCTGCNGNTGNCAANGACGATGATGATAGTGATGACGGTGAT-ATGATATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTTAA-GAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA-------CAAT-ATGANGGNNGNTGCNGNNGNCANNNATGATGATGACGGTGATGATGGTGAT-ATGNTATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTTAA-GAACTTCTAAGCAAATGACGATAACCGTGATGGTGATTAAAA-------C
gi|1 : cgtgATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T--TTTATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTTAA-GAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTTAA-GAACATCCAAGCAAATGACGATAACCATTATGATGATGAAAA-------CAAT----------GCTGCTGCTGCTAAGGATGATGATGGTGATGATGATGGTG---ATGATATTTTGC-------------TTTT----TTATTACAATGAT---GTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTTAA-GAACTTCTAAGCAA
gi|12 : C-------------TTTT----TTATTACTGTGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTTAA-GAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTTAA-AAACGTTTTAGTAAATGACGATAACC--------NNNNNNNN-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNTTATTTTGC-------------TTTT----CTATTACGATGAG---GTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGACTT--TT-ATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGATGATTAAAA-------CAATGATGACGG----TG------------ATGATGA-GA--GTGATG---------ATGATATTTTGC-------------TTTT----TAATTACAATGAT---GTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : a-------------TTTT----TTATTACGATGAC---GTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTTAA-GAACGTCTAAGCAAAT
gi|2 : tgcATTTTCC-------------ATTA----TTATTACGATCAT---GTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTG---GTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTTAA-GAACATCCAAGCAAATGACGATAACCATGATGGTGATGAAAA-------CANN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNATTTTGCT-TTTTTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|4 : AGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTTAA-GAACGCCTTAGC-AATGACGATAACCATGATGGTGATGAAAA-------CAAT-ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGG
gi|5 : AAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTTAA-GAACGTCTAAGCAAATGGTTATAACC---ATGGTGATGAAAA-------CANN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGATGTTGA------TATTTTGC-------------TTTT----TTATTACAATAAT---GTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACA----ATGATAA-GAACGTCTAAGTAAATGACGATAACCA-----GNNNNNNNNN-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNATTTTGT-------------TTTT----TTAT---GATGAT---ATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTAAA-GAACATCTAAGCAAATGACAATAACCATGATGATACTGATGA-------CGGTGATGATG
gi|7 : gcttgcGCAAATGACAATAACCATGATGATACTGATGACGGTGATGATGATATTTTGC-------------TTTT----TTATTACGATGAT---GTT------GATCTAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGCatattttgcttttttattacgatgatgttgatctagtaagggacctttattcggaacaattgtcggctggc
gi|8 : gcttgcaaataaccagtctatttacatattattgaaaacgcaggttttcccttactgacatttacacaattcaggtgatatttcatagagaatagaaatatgagtaagttaaaatgttgtttgctggaacgacgcagtattggatctagagcgacttttatgtagaataaaaaaacgataaaaagggatgtaaagaacatctaaTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTTAA-GAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTTAA-GAACGTCTTAGCAAATGACGATAACCATGATGATGATAAAAAAANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNATATTGC-------------TTTT----TAATTACGATAAT---GTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 2222222222222222 22222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111 3333333333333 1111 111
lowQualScore : 3 6666666666666666 0 2 66666 66666666666666666666666 2 2 2 4 2 2 55555555555555555555555555555555555555555555555555555555555555555 0 3333333333333 1111 000
lowQualScore : . ................ . . ..... ....................... . . . . . . ................................................................. . ............. .... ...
lowQualScore : 3 5555555555555555 2 5 77777 77777777777777777777777 9 7 7 3 7 3 99999999999999999999999999999999999999999999999999999999999999999 8 8888888888888 9999 888
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA-------CAAT-ATGACGGTNGCTGCTGCTGCTAAGGATGATGATGANAGTGATGATGGT----TGATATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA-------CAAT-ATGACGGNNGCTGCNGNTGNCAANGACGATGATGATAGTGATGACGGTGATATGATATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGGTGATTAAAA-------C
gi|1 : cgtgATTTTGC-------------TTTT----TTATTACGATGAT---GTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T--TTTATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGATGATGAAAA-------CAAT----------GCTGCTGCTGCTAAGGATGATGATGGTGATGATGATGGTGAT--GATATTTTGC-------------TTTT----TTATTACAATGAT---GTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : C-------------TTTT----TTATTACTGTGAT---GTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACC-NNNNNNNNNNNNNNN-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-------TATTTTGC-------------TTTT----CTATTACGATGAG---GTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGATGATTAAAA-------CAATGATGACGGT-------------------GATGATGAGAGTGATG--------ATGATATTTTGC-------------TTTT----TAATTACAATGAT---GTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : a-------------TTTT----TTATTACGATGAC---GTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgcATTTTCC-------------ATTA----TTATTACGATCAT---GTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTG---GTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGGTGATGAAAA-------CANN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGCT-TTTTTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|4 : AGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGGTGATGAAAA-------CAAT-ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGG
gi|5 : AAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGGTGATGAAAA-------CANN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGAT-GT----TGATATTTTGC-------------TTTT----TTATTACAATAAT---GTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACA----ATGAT-AAGAACGTCTAAGTAAATGACGATAACCA-----GNNNNNNNNN-------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGT-------------TTTT----TTAT---GATGAT---ATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTG----------------ATGACGGT-------------------GATGATGATATT--T----------TGCTTTTTTA----------------------TTACGATGAT------GTTGAT------CTAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGC
gi|8 : gcttgcTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGATGATAAAAAAANNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTGC-------------TTTT----TAATTACGATAAT---GTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 1 2222222222222222 22222222222222222222222 999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 3 6666666666666666 0 2 66666 66666666666666666666666 2 2 2 4 2 2 777777777777777777777777777777777777777777777777777777777777777777777 3
lowQualScore : . ................ . . ..... ....................... . . . . . . ..................................................................... .
lowQualScore : 3 5555555555555555 2 5 77777 77777777777777777777777 9 7 7 3 7 3 111111111111111111111111111111111111111111111111111111111111111111111 1
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA-----------CAAT-ATGACGGT-GCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA-----------CAAT-ATGACGGTNGCTGCTGCTGCTAAGGATGATGATGANAGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGGTGATTAAAA-----------C
gi|1 : cgtgATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T--TTTATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGATGATGAAAA-----------CAAT----------GCTGCTGCTGCTAAGGATGATGATGGTGATGATGATGGTGATGATATTTTGCTTTT-TTATTACAATGATGTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : CTTTT-TTATTACTGTGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACC-NNNNNNNNNNNNNNN-----------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-----TATTTTGCTTTT-CTATTACGATGAGGTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGATGATTAAAA-----------CAATGATGACGG-------------------TGATGATGAGAGTGATGA------TGATATTTTGCTTTT-TAATTACAATGATGTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : aTTTT-TTATTACGATGACGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgcATTTTCCATTA-TTATTACGATCATGTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTG---GTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGGTGATGAAAA-----------CA
gi|3 : ATTTTGCTTTT-TTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgcttttttattacgatgatgttgatcactatctagtaagggacctctatgcggaacgtttgtcgactggc
gi|4 : taaatagccgacgtctattaacatatttaatgaaaactgattttaacatactactggtgatgtttcatagagaatagaaatatgatcaaattaaaatgttggttgaaggaaagacgtagtattggatatagagcgatttagtttatgtacatgtagaacaaaaaaacaaaataagggatgttaagaacatccaagcaaatgacgataaccatgatggtgatgaaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGGTGATGAAAA-----------CAAT-AT
gi|4 : ATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgttttttttattacgatgatgttgatcacgatctattaagggacctacatgcggaacgtttatcgactgg
gi|5 : agcagacgtctattaacacattaatgaaagctgatttttatataataataatgatatttcatagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagccactttttatgtacatgtagaataaaaaaacaaaagaagggatgttaagaacgccttagcaatgacgataaccatgatggtgatgaaaacaatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGGTGATGAAAA-----------CANN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGAT-GT--TGATATTTTGCTTTT-TTATTACAATAATGTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACA----ATGAT-AAGAACGTCTAAGTAAATGACGATAACCA-GNNNNNNNNNNNNN-----------NNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATTTTGTTTTT-TTAT---GATGATATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTG--------------------ATGACGGT----------------GATGATGA---------------------TATTTTGCTTTT-TTATTACGATGATGTT------GATCTAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGC
gi|8 : gcttgcTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGATGATAAAAAAANNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATATTGCTTTT-TAATTACGATAATGTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 1 2222222222222222 22222222222222222222222 9999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 3 6666666666666666 0 2 66666 66666666666666666666666 2 2 2 4 2 5555555555555555555555555555555555555555555555555555555555555555555555 3
lowQualScore : . ................ . . ..... ....................... . . . . . ...................................................................... .
lowQualScore : 3 5555555555555555 2 5 77777 77777777777777777777777 9 7 7 3 7 6666666666666666666666666666666666666666666666666666666666666666666666 1
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGGTGATTAAAA------------C
gi|1 : cgtgATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T--TTTATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGATGATGAAAA------------CA-AT---------GCTGCTGCTGCTAAGGATGATGATGGTGATGATGATGGTGATGATATTTTGCTTTT-TTATTACAATGATGTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : CTTTT-TTATTACTGTGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACCNNNNNNNNNNNNNNNN------------NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-----TATTTTGCTTTT-CTATTACGATGAGGTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGATGATTAAAA------------CA-ATGATGACGG------------------TGATGATGAGAGTGATGA------TGATATTTTGCTTTT-TAATTACAATGATGTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : aTTTT-TTATTACGATGACGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgcATTTTCCATTA-TTATTACGATCATGTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTG---GTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-
gi|3 : ATTTTGCTTTT-TTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgcttttttattacgatgatgttgatcactatctagtaagggacctctatgcggaacgtttgtcgactggc
gi|4 : taaatagccgacgtctattaacatatttaatgaaaactgattttaacatactactggtgatgtttcatagagaatagaaatatgatcaaattaaaatgttggttgaaggaaagacgtagtattggatatagagcgatttagtttatgtacatgtagaacaaaaaaacaaaataagggatgttaagaacatccaagcaaatgacgataaccatgatggtgatgaaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGGTGATGAAAA------------CA-AT-AT
gi|4 : ATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgttttttttattacgatgatgttgatcacgatctattaagggacctacatgcggaacgtttatcgactgg
gi|5 : agcagacgtctattaacacattaatgaaagctgatttttatataataataatgatatttcatagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagccactttttatgtacatgtagaataaaaaaacaaaagaagggatgttaagaacgccttagcaatgacgataaccatgatggtgatgaaaacaatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGGTGATGAAAA------------CANNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGAT-GT--TGATATTTTGCTTTT-TTATTACAATAATGTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACA----ATGAT-AAGAACGTCTAAGTAAATGACGATAACCAGNNNNNNNNNNNNNN------------NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATTTTGTTTTT-TTAT---GATGATATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTG----------------------ATGACGGT---------------GATGATGAT---------------------ATTTTGCTTTT-TTATTACGATGATGTT------GATCTAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGC
gi|8 : gcttgcTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGATGATAAAAAAANNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATATTGCTTTT-TAATTACGATAATGTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 1 2222222222222222 22222222222222222222222 9999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 3 6666666666666666 0 2 66666 66666666666666666666666 2 2 2 4 2 5555555555555555555555555555555555555555555555555555555555555555555555 3
lowQualScore : . ................ . . ..... ....................... . . . . . ...................................................................... .
lowQualScore : 3 5555555555555555 2 5 77777 77777777777777777777777 9 7 7 3 7 6666666666666666666666666666666666666666666666666666666666666666666666 1
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T--TTAATGTA----------CATGTAGAATAAA-AAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGGTGATTAAAA------------C
gi|1 : cgtgATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T--TTTATTTA----------CATGTAGAAT-AA-AAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTACTT--TT-----------------ATGTAGAAG-AATAAAAACTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGATGATGAAAA------------CA-AT---------GCTGCTGCTGCTAAGGATGATGATGGTGATGATGATGGTGATGATATTTTGCTTTT-TTATTACAATGATGTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G--TTTATGTA----------CATGTAAAAT--A-AAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : CTTTT-TTATTACTGTGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctA-AGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-------ATTTA----------AATATA--AT-AA-CAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACCNNNNNNNNNNNNNNNN------------NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-----TATTTTGCTTTT-CTATTACGATGAGGTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTCGAAG-AA-AAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGATGATTAAAA------------CA-ATGATGACGG------------------TGATGATGAGAGTGATGA------TGATATTTTGCTTTT-TAATTACAATGATGTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGACGT--T
gi|17 : aTTTT-TTATTACGATGACGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTATAAATAAAATTATGTAGAAT-----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgcATTTTCCATTA-TTATTACGATCATGTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTG---GTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGATTTAGTTTATGTA----------CATGTAGAAC-AA-AAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-
gi|3 : ATTTTGCTTTT-TTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgcttttttattacgatgatgttgatcactatctagtaagggacctctatgcggaacgtttgtcgactggc
gi|4 : taaatagccgacgtctattaacatatttaatgaaaactgattttaacatactactggtgatgtttcatagagaatagaaatatgatcaaattaaaatgttggttgaaggaaagacgtagtattggatatagagcgatttagtttatgtacatgtagaacaaaaaaacaaaataagggatgttaagaacatccaagcaaatgacgataaccatgatggtgatgaaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGGTGATGAAAA------------CA-AT-AT
gi|4 : ATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgttttttttattacgatgatgttgatcacgatctattaagggacctacatgcggaacgtttatcgactgg
gi|5 : agcagacgtctattaacacattaatgaaagctgatttttatataataataatgatatttcatagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagccactttttatgtacatgtagaataaaaaaacaaaagaagggatgttaagaacgccttagcaatgacgataaccatgatggtgatgaaaacaatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T--TTTATGTA----------CATGTAGAAT-AA-AACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGGTGATGAAAA------------CANNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGAT-GT--TGATATTTTGCTTTT-TTATTACAATAATGTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGCAGAAT-AA-AAAAACAA-AACA----ATGAT-AAGAACGTCTAAGTAAATGACGATAACCAGNNNNNNNNNNNNNN------------NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATTTTGTTTTT-TTAT---GATGATATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGACTT--TT-----------------ATGTAGAAT-AA-AAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTG----------------------ATGACGGT---------------GATGATGAT---------------------ATTTTGCTTTT-TTATTACGATGATGTT------GATCTAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGC
gi|8 : gcttgcTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA---------TCTA---------------------AAT-AA---------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGACTT--TT-----------------ATGTAGAAT-AA-AAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGATGATAAAAAAANNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATATTGCTTTT-TAATTACGATAATGTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
blockSeqs : T GCAGGTTTTCCCTTAC C AATAT TTTTATGTATAAATAAAATT . T T T A AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN T
blockSeqs : T . . . TTAGTTTATGTAC . . . T . CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGATGTTGA .
blockSeqs : T . . . TTTTTATGTAC . . . C . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN .
blockSeqs : . . . . TTTTATTTAC . . . C . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT .
blockSeqs : . . . . GTTTATGTAC . . . C . CAATGATGACGGTGATGATGAGAGTGATGATGA .
blockSeqs : . . . . TTTTATGTAC . . . C . ATGACGGTGATGATGAT .
blockSeqs : . . . . TTTTATGTAC . . . T . .
blockSeqs : . . . . ATTTAA . . . G . .
blockSeqs : . . . TTTT . . . T . .
blockSeqs : . . TTTT . . . C . .
blockSeqs : . . TTTT . . . A . .
blockSeqs : . . TCTA . . . C . .
blockSeqs : . . TTTT . . . . .
blockSeqs : . . . . . .
blockSeqs : .
blockSeqCons : TTTTATGTAC*************
originalCons : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTT--TTTATGTA----------CATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
finalCons : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGACTTTTATGTAC-------------ATGTAGAAT-AA-AAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT
Alignments
lowQualScore : 1 2222222222222222 11111111111 9999999999999999999999999999999999999999999999999999999999999999999999
lowQualScore : 3 6666666666666666 0 2 0 66666 44444 1 66666666666 2 2 4 2 5555555555555555555555555555555555555555555555555555555555555555555555 3
lowQualScore : . ................ . . . ..... ..... . ........... . . . . ...................................................................... .
lowQualScore : 3 5555555555555555 2 5 9 77777 99999 4 11111111111 9 7 3 7 6666666666666666666666666666666666666666666666666666666666666666666666 1
consensus : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T---TTTATGTA----------CATGTAGAAT-AAAAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
Reference ( family-1544 ) : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTTACATAATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T---TTTATGTA----------CATGTAGAAT-AAAAAAACAA-AACAAGGGATGTT-AAGAACGTCTAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-AT-ATGACGGTGCTGCTGCTGCTAAGGATGATGATGGCGGTGATGATGGT--TGATATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGC
gi|1 : TAAATAGCCGACGTCTATTTACACATT-AATGAAAAC----------------TGATTTTAACATA---TTGGTGATATTGCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTAAAGGAAAGACGTATTATTGGATC-----TAGAGCGAC-T---TTAATGTA----------CATGTAGAATAAAAAAAACAA-AAGAAGGGATTTT-AAGAACTTCTAAGCAAATGACGATAACCGTGATGGTGATTAAAA------------C
gi|1 : cgtgATTTTGCTTTT-TTATTACGATGATGTTGATCACGATCTAGTA--GGACCTCTCTGCGGTACATTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaattttgcttttttattacgatgatgttgatcacgatctagtaggacctctctgcggtacatttgtcgactggct
gi|10 : cgtgtaaatagccgacgtctatttacacattaatgaaaactgattttaacatattggtgatattgcatagagaatagaaatatgatcaaattaaaatgttgttggttaaaggaaagacgtattattggatctagagcgactttaatgtacatgtagaataaaaaaaacaaaagaagggattttaagaacttctaagcaaatgacgataaccgtgatggtgattaaaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaATAGAGAATAGAAATATG-ATCAAATTTAAATATTGCTGGTTGAAGGAAAGACGTAGGATTGGATC-----TAGAGCGGC-T---TTTATTTA----------CATGTAGAAT-AAAAAAACAA-AATAAGTGATGTT-AAGAACGTCTAAGCAAt
gi|10 : CTAGCAAGGGACCTCTATGCCGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctagcaagggacctctatgccgaacgtttgtcgactggc
gi|11 : atagagaatagaaatatgatcaaatttaaatattgctggttgaaggaaagacgtaggattggatctagagcggcttttatttacatgtagaataaaaaaacaaaataagtgatgttaagaacgtctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATTGAGAATAGAAATATC-AGTAAATTAAAACGTTGGTGGTTGAAAGAA----GTAGTACTGGATC-----CAGAGTTAC-T---TTTATGTA----------GA---AGAAT-AAAAA--CTA-AA---GGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATTATGATGATGAAAA------------CA-AT---------GCTGCTGCTGCTAAGGATGATGATGGTGATGATGATGGTGATGATATTTTGCTTTT-TTATTACAATGATGTTGATCACGATCTAGTAAAGGACCATTATGCGGAACGTTTGCCGACTGGC
gi|12 : CATAGAGAACAGAAATATG-ATAAAATTAAAATGTTGTTGGTTGAAGGAAAGGCGTAGTACTAGATC-----TAGTGCGAC-G---TTTATGTA----------CATGTAAAAT--AAAAAACAA-AATAAGGGATGTT-AAGAACTTCTAAGCAA
gi|12 : CTTTT-TTATTACTGTGATGTTGATCACGATCTAGTAAGGGACCTCTATGCGGAAAGTTTGTAGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttcttttttattactgtgatgttgatcacgatctagtaagggacctctatgcggaaagtttgtagactggc
gi|13 : catagagaacagaaatatgataaaattaaaatgttgttggttgaaggaaaggcgtagtactagatctagtgcgacgtttatgtacatgtaaaataaaaaacaaaataagggatgttaagaacttctaagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttAAC----------------TGATTTTTAAGTAATACTGGTGATATTGCAAAGAGAATAGAAATATG-ATT-AATTAAAACGTTATTGGTTCAAGGAA
gi|13 : aggttttttcctAAGGAACAA-AACAAGGGAAGTT-AAGAACGTCTTAGCAAcaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|13 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcGGGACCTTTATGCGGAACATGTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgggacctttatgcggaacatgtgtcgactggc
gi|14 : aggttttttcctaactgatttttaagtaatactggtgatattgcaaagagaatagaaatatgattaattaaaacgttattggttcaaggaacaaaacaagggaagttaagaacgtcttagcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAACATGCATTAA-TTAAAACGTTGGTGGTTGAAGAACATATGTTGTATTGGATTAATATTAAAGTGAC-A---TTTA---A-----------ATATA--AT-AACAAAACAC-AACAAGGGGTGTT-AAAAACGTTTTAGTAAATGACGATAACCNNNNNNNNNNNNNNNN------------NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-----TATTTTGCTTTT-CTATTACGATGAGGTT------GATCTAGTAAGGAACCTTTATTCGGAACGTTTGTGAACTGGC
gi|15 : TAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAG-----ACGTAGTATTGGATC-----TAGAGCGAC-T---TTTATGTA----------CATGTCGAAG-AAAAAAACAA-AACAAGGTATGTTAAAGAATGTCTAAGCAACTGACGATAACCATGATGATGATTAAAA------------CA-ATGATGACGG------------------TGATGATGAGAGTGATGA------TGATATTTTGCTTTT-TAATTACAATGATGTTGATCACGATCTAGTAAGGGACCTTTATGCGGAACGTTTGTCG
gi|16 : AGTCGACATCTAATTACACATT-AATGATAAA----------------TGATTTTTATATCATACTGGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACATAGTATTGGATC-----TAGAGCGAC-G---TT
gi|17 : aTTTT-TTATTACGATGACGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAATGTGTGTGGACTGGC
gi|18 : tctgAAATAGCCGACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACATAATACTGGTGAT
gi|2 : atgcAAATAGCCGACGTCTATTTACATATT-AATGAAAAC----------------TGATTATTACATAATACTGGTGATATTTCAAAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T---TTTATGTATAAATAAAATTATGTAGAAT----AAAACAA-AAC--GGGATGTT-AAGAACGTCTAAGCAAAT
gi|2 : tgcATTTTCCATTA-TTATTACGATCATGTTGATCACGATCTAGTAAGGGTCCTCTTTGCGGAACGTTTGTCGACTGGCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttccattattattacgatcatgttgatcacgatctagtaagggtcctctttgcggaacgtttgtcgactggc
gi|20 : tgcaaatagccgacgtctatttacatattaatgaaaactgattattacataatactggtgatatttcaaagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagcgacttttatgtataaataaaattatgtagaataaaacaaaacgggatgttaagaacgtctaagcaaatannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGATCTAGTAAGGGACCTTTATGCGGAACATTTGT-GACCGGC
gi|21 : GTAAGGGACCTTTATGCGGAACGTTGGTCGACTGG
gi|3 : TAAATAGCCGACGTCTATTAACATATTTAATGAAAAC----------------TGATTTTAACATACTACTGGTGATGTTTCATAGAGAATAGAAATATG-ATCAAATTAAAA---TGTTGGTTGAAGGAAAGACGTAGTATTGGATA-----TAGAGCGAT-TTAGTTTATGTA----------CATGTAGAAC-AAAAAAACAA-AATAAGGGATGTT-AAGAACATCCAAGCAAATGACGATAACCATGATGGTGATGAAAA------------CA-
gi|3 : ATTTTGCTTTT-TTATTACGATGATGTTGATCACTATCTAGTAAGGGACCTCTATGCGGAACGTTTGTCGACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgcttttttattacgatgatgttgatcactatctagtaagggacctctatgcggaacgtttgtcgactggc
gi|4 : taaatagccgacgtctattaacatatttaatgaaaactgattttaacatactactggtgatgtttcatagagaatagaaatatgatcaaattaaaatgttggttgaaggaaagacgtagtattggatatagagcgatttagtttatgtacatgtagaacaaaaaaacaaaataagggatgttaagaacatccaagcaaatgacgataaccatgatggtgatgaaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGCAGACGTCTATTAACACATT-AATGAAAGC----------------TGATTTTTATATAATAATAATGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCCACTT---TTTATGTA----------CATGTAGAAT-AAAAAAACAA-AAGAAGGGATGTT-AAGAACGCCTTAGC-AATGACGATAACCATGATGGTGATGAAAA------------CA-AT-AT
gi|4 : ATTTTGTTTTTTTTATTACGATGATGTTGATCACGATCTATTAAGGGACCTACATGCGGAACGTTTATCGACTGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnattttgttttttttattacgatgatgttgatcacgatctattaagggacctacatgcggaacgtttatcgactgg
gi|5 : agcagacgtctattaacacattaatgaaagctgatttttatataataataatgatatttcatagagaatagaaatatgatcaaattaaaatgttgttggttgaaggaaagacgtagtattggatctagagccactttttatgtacatgtagaataaaaaaacaaaagaagggatgttaagaacgccttagcaatgacgataaccatgatggtgatgaaaacaatatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAATAGCCAACATCTATTTACACATTTAATGAAAAC----------------TGATTTTTACGTAATACTAGTGATATTTCATAGAGAATAGAAATATG-ATCAAATTAAAATGTTGTTGGTTGAAGGAAAGACGTAGTATTGGATC-----TAGAGCGAC-T---TTTATGTA----------CATGTAGAAT-AAAACAACAA-AATAAGGGATGTT-AAGAACGTCTAAGCAAATGGTTATAACC---ATGGTGATGAAAA------------CANNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGATGAT-GT--TGATATTTTGCTTTT-TTATTACAATAATGTTGATCACGATCTAGTAAGGGACCTCTATGTGGAATGTTTGTCGACTGGC
gi|6 : agcAAATAGCCAACGTCTATTT---CATT-ATTGAAAAC----------------ACAGGTT-ACATAATACTGGTGATATTTCCTAGAGAATGGAAATATG-AGTATATTAAAATGTTGTTGGTTTAAGGAAAGATGTAGTATTGGATC-----TAGAGCGAC-T---TTT----------------ATGCAGAAT-AAAAAAACAA-AACA----ATGAT-AAGAACGTCTAAGTAAATGACGATAACCAGNNNNNNNNNNNNNN------------NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATTTTGTTTTT-TTAT---GATGATATTGATCACGATCTAATAATGGACCTTTACTCGAAACGTTTGTCGACTGGC
gi|7 : cacgcAAATAACCA--GTCTATTTACATATT-ATTGAAAACGCAGGTTTTCCCTTACTGACATTTACACAATTCAGGTGATATTTCATAGAGAATAGAAATATG-AGTAAGTTAAAATGTTGTTTGCT---GGAACGACGCAGTATTGGATC-----TAGAGCGAC-T---TTT----------------ATGTAGAAT-AAAAAAACGATAAAAAGGGATGTA-AAGAACATCTAAGCAAATGACAATAACCATGATGATACTG----------------------ATGACGGT---------------GATGATGAT---------------------ATTTTGCTTTT-TTATTACGATGATGTT------GATCTAGTAAGGGACCTTTATTCGGAACAATTGTCGGCTGGC
gi|8 : gcttgcTTTTTACATAATACTGGTGATATTCCATAGAGAATAGAAATATT-ATCAAATTAAAATGTTGTTGGTTGAAGAAAAGAAGTAGTACTGGATC-----TAGA----------TCTA---------------------AAT-AA--------------GGGATGTT-AAGAACGTCTAAGCA
gi|8 : ctatGGGACTTCTATACGGAAAGTTTGTCAACTGGCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngggacttctatacggaaagtttgtcaactggc
gi|9 : ctattttttacataatactggtgatattccatagagaatagaaatattatcaaattaaaatgttgttggttgaagaaaagaagtagtactggatctagatctaaataagggatgttaagaacgtctaagcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTAGAGAATAGAAATATG-AATAAACTAAAACGTTGTTGGTCGAAGGAAAGA---------------------GAGTGAC-T---TTTATGT----------------AGAAT-AAAAAAACAA-AACAAGAGATGTT-AAGAACGTCTTAGCAAATGACGATAACCATGATGATGATAAAAAAANNNNNNNNNNNN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--NNNNATATTGCTTTT-TAATTACGATAATGTTGATCATGATCTAGTAAGGGACCTTTATGTGGAACGTTTGTCGGCTGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): CTACAATTTGTGTGCTGGTTGTGGTGATTATCACAATGGTGATGAATACGATTT