lowQualScore : 11111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333 555555555555 1 1 444 1 1 11 1111 99999999999999999999999999999999999999999 1 11111111 33333 2222 1 333333333 6666666666666666666666666666666666666 1 111 33333333333333 11 1 3333333333 2 1 1 11 1 1 1 11 1 1 1 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 333 88888888888888888888 33333 222222222 1 1 11 333333 1 11 1 1 222222 444444444 111 1111111 11
lowQualScore : 55555555 1 9 1 6 7 333333333333 4 6 7 6 9 1 6 1 1 1 6 7 7 6 999 2 0 4 2 0 1 11 2222 6 5 5 5 00000000000000000000000000000000000000000 4 7 77 66666666 22 33333 1 3 6 3 1111 0 5 3 33 3 0 777777777 0 3333333333333333333333333333333333333 8 9 3 8 0 6 777 00000000000000 6 1 3 0 4 99 55 0 4444444444 11 0 0 2 7 3 33 9 1 5 1 1 6 7 5 6 6 11 0 4 0 5 6 5 6 2 4 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 6 22 6 7 555 88 4 2 2 44444444444444444444 8 33333 6 8 0 888888888 7 6 0 7 5 99 0 88 33 1 222222 8 0 6 2 77 6 1 7 6 88 8 333333 1 777777777 111 1 1 7777777 55
lowQualScore : ........ . . . . . ............ . . . . . . . . . . . . . . ... . . . . . . .. .... . . . . ......................................... . . .. ........ .. ..... . . . . .... . . . .. . . ......... . ..................................... . . . . . . ... .............. . . . . . .. .. . .......... .. . . . . . .. . . . . . . . . . . .. . . . . . . . . . ................................................................................................................................................................................ . . .. . . ... .. . . . .................... . ..... . . . ......... . . . . . .. . .. .. . ...... . . . . .. . . . . .. . ...... . ......... ... . . ....... ..
lowQualScore : 77777777 0 0 0 0 3 777777777777 7 0 3 0 7 0 0 0 0 0 0 0 3 3 222 2 0 5 0 8 4 00 4444 7 7 9 7 22222222222222222222222222222222222222222 3 0 77 11111111 00 33333 0 7 0 7 2222 0 0 2 55 2 8 888888888 2 2222222222222222222222222222222222222 7 2 5 0 2 5 555 00000000000000 0 0 2 8 0 55 00 0 8888888888 55 0 0 2 0 2 88 2 2 4 0 0 5 0 0 0 0 88 5 2 8 0 0 0 0 5 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 00 0 0 000 00 0 5 5 55555555555555555555 3 33333 0 3 7 000000000 3 0 7 0 5 88 8 88 44 0 222222 8 0 0 5 55 0 0 0 6 66 2 000000 4 222222222 888 4 4 4444444 88
consensus : TAATTTATTAATTGACAAAAATA-CTATG--ACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAGG--TGTTTT-TTTTTGGTNACAAGTAAAAAGATAATGACAAACGGTCACCGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCGATGTC---AACACCCTTT-CCCTCAACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGTTTTT---A-----------------------TAC-----------GTGTCCNAAGTTTTAAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACG-----AGTNTATGTCCCTCCCTGCAGNCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ANCTAGTCACTG------------ATG--TT-TCC----GAAGT---C-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATA---CAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATNAAA-TAGAATAT--A------ATACGATGTCATACTATTT-CCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACACGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAANTGTAAGNAAAGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACNAGTCT-TCTCTCTCTGTTTCCCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TACGCCAAAGGCACTTGCAATTAGATATTACACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGNNGACGNCCGTTTCTTTACTTCANTTCTNGTATGACAACAGTGCAAA-CACA-TAT-CGCTCTGCATTTAGATAGTTAACAATATATCTA-----TACGCTCTTGTTGAATTTTAAAATGTAACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTNACAGTTTCTGGAAGTGTTGAT-ATTC-TTTTGCGCATGCGCGAATGT--AAT-ATCCTGTTACGTCATACAGACAATTTA-CATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAG------GTTTATATTGAACAGAAAT-CA--TCATATAT--TGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
Reference ( gi|1 ) : TAATTTATTAATTGACAAAAATA-CAAAA--ATGCTCGACACATAATAAATTCGATGATTAACAAGCATTTGTGTTACAAGATCCTTTCATGTAGTACAGAAACAAG--TGTTTTATTTTTGGTTACAAGTAAAGAGATAATGACAAATGGTTACTGAGTAATCAGAAAAGCTCTTGAGTCTGTGGTCTCCACAAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCTGTTTCCTTTGTTCAGCCTTTTGGAAATAAATTCATTGCAATGTCGTTAATACCCTTT-CCCTCAGCGTATTGAAGTCTGGGTTTAGTGACTG--CTCTCT--CGATA-GACTGTCAGTAGCGATGA-TATAA-CCTGTTTTT---A-----------------------TAT-----------GTGTCCAAAGTTTTGAACTTTAGTGCGAGGATGACAATTATATGGTGATG--------CACTTTACTAGAAGAAAAAGCAAACG-----AATGTATGTCCTTCCCTGCAGGCTCAGG----ATCT-GTCTATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC----AAAGT---C-AGTCATTGTCATTGTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATA---CAGAT--------GCA--GCATCACCACAGAGAACAGTATTGGTATTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAA-TAGAATAT--A------ATACGATGTCATA-TATTT-CTAGTTATAATATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCATGTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAGTCTGTCTCTCTCTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAAATATCGCACCGACTTCGAACGCAAACTAGAAAA---AAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAATATTCGCTCTGCATTTTGATAGTTAACAATATATCTA-----TATGCTCTTGTTGAATTTCAAAATGTTACGTGCATC--T--AA--GTCATAAATTACGTTTAGAAAATACTTACACGGGACTTCACAGTTTCTGGAAGTGTTGAT-ATTA-TTTTGCACATGCGCGAATGT--TAT-ATCCTGTTACGTCATACAGACAATTTA-CATATTTTATTTATGAATGACGGATGGGGAAACACGTTACCAGTATTCTAAAAACATGTACCAAAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAG------ATTTATATTGAACAGAAAT-AT--TC--ATAT--TGCATATTTAAGTAAAGT-TAA---ATGGGATAGTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|3 : TAATTAATTAATTGACAAAAATA-CTATG--ACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTTTAACAAGATCCTTTTGTGTAGTACAGAAACAGG--TG-----------GTAACAAGTAAAAAGTTAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCATTTCCTTTGTTCAGTCTTATGG-AATAAAATCATTGCAATGTC---AACACCCTTT-CCCTCA-CGTATTAAAGTCTGGTTTTAGTGGCTGCTCTCTCT--CAATA-GACTGCCAGTAGCGATGA-TATAA-CCTGTTTTT---A-----------------------TTT-----------GTGTCCAAAGTTTTGAGCTATCATGCGAGGATGACAATTATATGGTGATG--------AACTTTACTAGAAGAAAAAGCAAACAAGTATAATTTATGTCCCTCCCTGCAGACTTGGG----ATCTAGTCACTGATGT--TTC---CAAAGT-------CAGTCACTGTCAATAACTGACATGCCTT-TT-------ACT---CTTGTCAGTATCATTTTTCCAAGCTGA-ATATATTGGGAACATGTCAGTTCTGTACAGTATA---CAGATATGTCAGAGCACTGCATCACCACAGAGAATAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAA-TAGAATATTAA------ATACGATTATATATTATTT-CCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTT--CTAGATACAAACCTTTGAACCAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTGAAGTTCTATATGGCACGTATAAGCTTTAACGGATG
gi|7 : TAATTTATTAAGTGACAAAAATA-CTAAG--ACGCTAGACACATAATAAATTCAATAATTAACAAGCATTTGTGTTACAAGATCCTTCTATGTAGTACAGAAACA-----GTTTTTTTTTTGGTCACAAGTAAAAAGATAATGACAAACGGTCACTGAATGATCAGAAAAGCTCTTGAGTCTGTGGCCTTCATGAGATCAAAATTATCCACAATAACATTTAACATCCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCGATGTC---AACAAACTTTCCCCTTAACGTATTAATGTCTGGGTTTAGTGGCTG--CTCTCT--CTACA-GACTGTCAGTAGCGATGA-TATAG-CCTGTTTTT---A-----------------------TCT-----------GTGTCCAAAGTTTTGAACTATAGTGCGAGGATGACAATTATATAGTGATG--------CACTTAACTAt
gi|13 : AATTTATTAATTGAAAAAAAAAATAATATGATGCTCGACACTTAATAAATTCGATTACTAACAAGCACTTGTGTTTCAAGATCCTTTTATGAAGTACAG-AAC-AGTTTGTTTT-TTTTTGGTTACAAATAAAAAGATAATGAC-AACGGTAACCGTGTAATactcgggatctgcccatgatattcttcatacaaa
gi|6 : TCCACAAGCTCATAATCATCCACAATAACATTAAACAGTCATCATTTATTCTGTTTCCTTCGTCCAGTCTTATGGAAATAAAGTCATTGCAATGTC---AATACCCTTT-CCCTCAACGTATTAAAGTCTGGGTTTAGTAGCTG--CTCTCT--CGATA-GACTGTCAGTTGCGATGA-TATAA-CTTGTTTTT---A-----------------------TAC-----------GTGTCCAAAGTTTTGAACTATAGTGCGAGGATGGCAATTATATGGTGATG--------CACTATACCAGAAGAAAAAGCAAACG-----AGTGTATGTCCCTCCCTGCAGGCTCAGG----ATCT-GTCCATGATATTCTTCACACAAACTCAGGATCT-GTCCATG------------ATA--TTCTTCACAGAAAATACCT-AGTCACTG--ATGTTTCCAA
gi|19 : TTGTCAACGCCCCCT-TCCTCGACGCATTGAAGTCT-GGTTTAGCGACAG--CTCTCTACTTATT-GACTGTCCGTAGCGATGC-TTTAA-CCTGagtcagtcactgtcaataactgacatggcttttactattgtcaatatcatttttcaaagctgaatatattgagaacaggttagttctgtacagcatacaga
gi|10 : aAGTTTGAGAT-AGCGACAG--CTCTCT--CCCTAAGACTATCAGTAGCGATGATTTTAA-CCTCTTTTT---T-----------------------TA
gi|17 : ttTA-GACTGTCAGTAGCGATGA-TTTAT-CCGGTTTTTAACA-----------------------TATGGACCCCTCACGTGTCCTAAGTTTTAGACTATAGTGCAAGGAT-ACCACT--------------------ACTTTACCGGAAGAAatcttttaaatccgcacatatggacccgcactcacggatccgaacttccgaagtcttaaactacagtgcgagtatgccaattacatgatgatgaattaagtgactttaccggaggaagaagaaga
gi|12 : GTCAGTAACGATGA-TTTTATCCTGTTTTT---AACCTGTACATACAGACACTCTCTCAC-----------GTGTCTTAAGTTTTAACCTACAGTGTAAGGATTTCACTTATATTGTGGTG--------CACTTCAggatacat
gi|18 : aggccgccttgtcaacggcccctccattgacgcattcgagtctaggatagcggaa-----------GTGTCCTCAGTTTTAATCTATAGTGCGAGGAT-AC-----CATGGTGATG--------CACTTTGCCGGAAGAA
gi|10 : tagtttttaacctgtacatatggactctcatcgcTCCGAAGTCTTAAACTACAGTGCGAGTATGCCAATTACATGATGATGAATTAAGTGACTTTACCGGAGGAAGAAGggat
gi|20 : ttagtttgagatagcgacagctctctccctaagactatcagtagcgatgattttaacctctttttttaatcttttaaatccgcacatatggacccgcactcacggatccgaactAGTTTTAAACTATTGTAAGATGATGTCAATTATATGGTGATG--------CACTTCACCGGAAGAAGAaaga
gi|21 : AGTGAGAGGATGCCACTAACATGGTGATG--------CACTTTACCGGAAGAAtaagaa
gi|9 : ACTTTACTGGAAGATAAATAAAACG-----AGTATATGTTCCTCCCTGCAGTATCAGGGTATATCT-GTCTATGATATTCTTCACAC-AAAT----AACAAGTGACTA------------ATG--TT-TCG----GCAGT---C-AGTCATTGTCAAT----CA--CTGATATGTATTggaa
gi|7 : CTCGGG----ATCT-GCCCATGATATTCTTCATACAAAttactcttgtccatatcatttttccaagttgaatttattgggaacaggtaagttc
gi|5 : taatttattaagtgacaaaaatactaagacgctagacacataataaattcaataattaacaagcatttgtgttacaagatccttctatgtagtacagaaacagttttttttttggtcacaagtaaaaagataatgacaaacggtcactgaatgatcagaaaagctcttgagtctgtggccttcatgagatcaaaattatccacaataacatttaacatccatcatttattccgtttccttcgttcagtcttatggaaataaaatcattgcgatgtcaacaaactttccccttaacgtattaatgtctgggtttagtggctgctctctctacagactgtcagtagcgatgatatagcctgtttttatctgtgtccaaagttttgaactatagtgcgaggatgacaattatatagtgatgcacttaactaaAAT----ACCTCGTCATTG------------ATG--TT-TCC----GAAGT---C-AGTCCCTGTCA
gi|5 : GTCAATATCATTTTTCCATGCTGA-ATATATTAGGAACAGGTCAGTTCTGTACAGCATA---CAGATATGTCAGAGCACTGAATCACCACAGAGAACAGTATTGGTGTTTAGACATCAGTTGGTCCAGTGTGACAGTTCCATTTCCCAGTTA-AAAATGAAA-TAGAATAT--A------TTACGTTGTAATACTATTT-CTTGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGAACATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGGTATAATAAAATTTGGGCCATAAAATTGGTCTACATATAGACAATGTAACTTTCTTTATGACATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAataactgatatgccttttactcttgtcaatatcatttttccatgctgaatatattaggaacaggtcagttctgtacagcatacagatatgtcagagcactgaatcaccacagagaacagtattggtgtttagacatcagttggtccagtgtgacagttccatttcccagttaaaaatgaaatagaatatattacgttgtaatactatttcttgttataaaatgttgcatctttcaatactagatttactttcctagatacaaacttttgaaccagaaaataagaacatgtacatatataattgcaacacacaaaaaggttggtacacagaggtataataaaatttgggccataaaattggtctacatatagacaatgtaactttctttatgacatgtataagctttaacggatgattgaacagttgttacatgcttctattaatgcggtgaaaccacccggacgaaattgtattggtacgaaacctccaacaactctctctctgtttaccgg
gi|6 : aatacctcgtcattgatgtttccgaagtcagtccctgtcaataactgatatgccttttactcttGTCAATATCATTTTTCAAAGCTGA-ATATATTGAGAACAGGTTAGTTCTGTACAGCATA---CAGAtgcggtgaaaccacccggacgaaattgtattggtacgaaacctccaacaactctctctctgtttaccgg
gi|9 : tccacaagctcataatcatccacaataacattaaacagtcatcatttattctgtttccttcgtccagtcttatggaaataaagtcattgcaatgtcaataccctttccctcaacgtattaaagtctgggtttagtagctgctctctcgatagactgtcagttgcgatgatataacttgtttttatacgtgtccaaagttttgaactatagtgcgaggatggcaattatatggtgatgcactataccagaagaaaaagcaaacgagtgtatgtccctccctgcaggctcaggatctgtccatgatattcttcacacaaactcaggatctgtccatgatattcttcacagaaaatacctagtcactgatgtttccaaagtcagtcactgtcaataactgacatggcttttactattTATCATTTTTCCAAGTTGA-ATTTATTGGGAACAGGTAAGTTC
gi|2 : actttactggaagataaataaaacgagtatatgttcctccctgcagtatcagggtatatctgtctatgatattcttcacacaaataacaagtgactaatgtttcggcagtcagtcattgtcaatcactgatatgtattttactcttgtccaTACAG-ATATGTCAGA---------GCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAA-TAGAATAT--A------ATACGATGTCATA-TATTT-CCAGTTATAAAATGTTGTATCTTTCAATACTAGATT--CACTTGCCTAGATATAAAGTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATATTAAAATTGGGGCCATAAAATCGGTCTACATGTAGACAATGTAA-------------------AAGCTTAAACGGATGATTGAACAGTTGTTAAATGCTTCTATTAAATAAGTGTAAGTAAAGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGTCT--------CTGTTTCCCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-TACGCCAAAGGCACTTGCAATTAGATATTACACCGGCTTCGAACGCAAACAAGAAAA---AAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTAGTATGACAACA---------------------CTGCATTTTGATACTTTACAATATTTATA-----TATGCTTTTGTTGAATTTTAAAATGTTACGTGCATC--T--AAAAGTCATAAATTGCGTATAGAAAATACTTACACAGGACT-CGCAGTTTCTGGAAGCATTGAT-ATTC-TTTTGCGCATGCGCAAATGC--AA--ATCCTGTTACGTCATACATACAATTTA-CATATTTTATTTATAAATGACGGATGGAGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATATTTCAGTAAAATATTAATATAT--TATTTACCAAAGCCGCCGAAAG------ATTTATATCGAACAGAAAC-CA--TCATATAT--TGCATACTTAAGTAAAGT-TAA---ATGGGATATTAACTTGTTAATCATTCGTGAATAGGTAGCTTTAA
gi|15 : caTTCCATT-----GAT-TATAACTGAAATAGAATAT--ACATGTAGTACAATGCCATA-TTTTTTCCAATTATAAAATGCTGCATCGTTCACTAC-GGATTGCTAATTTCCTAGATACAAACATTTTAACAAGAAAAGAA----ATGTACACATATa
gi|4 : aTTTGAACCAGAAAAAAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATCATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACATGTATAAGCTTTAACGGATGATTGAAAAGTTGTTACATGCTTCTATTAAATAACTGTAAGAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCA-T---TCTCTCTCTGTTT
gi|4 : GGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGATGACGATCGTTTCTTTACTTTATTTCTCGTATGACAACAGTGCAAAACACAATATTCATTCTGCATTTAGATAGTTAACAATATATCTATAATTTATGCTCTTGTTGAATTTTAAAATGTAACATGCATC--TCAAA--GTCATAAATTGCATATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTGGT-ATTCTTTTTGCGCATATGCGAATGT--AAT-ATCCTTTTACGTCATACAGACAATTTA-CATATTTTATTTATAAATGACGGAT-GGGAAACCCGTTACCAGTATTCTGAAAACATGAACAAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCTGCGAAAAG------GTTTATATTGAACAGAAAT-CA--TCATATAT--TGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGGTTTAactggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcttcgaacgcaaacaagaaaaaaaaaaagacgtacagatgacgatcgtttctttactttatttctcgtatgacaacagtgcaaaacacaatattcattctgcatttagatagttaacaatatatctataatttatgctcttgttgaattttaaaatgtaacatgcatctcaaagtcataaattgcatatagaaaatacttacacgggactttacagtttctggaagtgttggtattctttttgcgcatatgcgaatgtaatatccttttacgtcatacagacaatttacatattttatttataaatgacggatgggaaacccgttaccagtattctgaaaacatgaacaaataattcagtaaaatatcaatatattttatttaccaaagctgcgaaaaggtttatattgaacagaaatcatcatatattgcatatttaagtaaagttaaatgggatattagtttgttaatcattcgtggataggttggttta
gi|14 : tttgaaccagaaaaaaagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagatatcataaaattggggccataaaattggtctacatgtagacaatgtaaagttctatatgacatgtataagctttaacggatgattgaaaagttgttacatgcttctattaaataactgtaagaaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccattctctctctgtttactggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAA-CACA-TAT-CGCTTTGCAGTTAGATAGTTAACAAAATATCTA-----TACACTCTTATTGAATTTTAAAATGTAAAATGCATCTAT--AA--GTC---AATTGCATATAGAAAA----TACATGGGACTTGACAGTTTCTGAAAGTA-TAATAATTA-TATT
gi|22 : tAAAA-ACTAACACGGGACTTGACATTTTTTGGAAGTGTTGAT--TTA-
gi|8 : gtGGATGTGTTGAT-ATTC-TTTTGCACATGCGCGAATGTATTATTATC-TGTTACGTCATACAGGCAATTTA-CATATTTTATTTATAATTGACGGATGTGGAAGCCCGTTACCGGTATTCTGAAAGCACGTACCAATTATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCAGAAAG------GTATATTTTGAAAAGAAGTCATTGTT--ACGT--TACATAATAAAGTAATGT-------GTGGCAT--TAGTTTGTAAATCATTCGTTGATAGGTTGCTTTA
gi|11 : GCGTGAATGT--AGT-ATCATGTTACGTCATACAGAAAAATTAACATTTTTTATTCATAAATGACTGATGGGGAAA-----TATCAATAT
gi|16 : GTAAAATATCAATAAATTTTAATTACCAAAGCCACAGAAAA------GTTTATATTGAACAGAAAT-CA--TC--ATATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTACTTTGTTAATCATTTGTGGATAGGATGCTTTAgttttattaaccaaaaccgttgaaaggtatatatatgtattaaatggaaatcatcatatatatcaaaataatgtatagcatgtgggaaattagt
gi|11 : AAATATCAATATGTTTTATTAACCAAAACCGTTGAAAGGTATATATATGTATTAAATGGAAAT-CA--TC--ATAT-----ATATCAAAATAATGTATAGCATGTGGGAAATTAGT
Alignments
lowQualScore : 111 11 1 111 2222222222 77777777777777777777777 11111111 22222 1111 222222 444444444444 11 222222222222 222222222 1 11 666666666666666666666666666666666666666666 222222 11 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333333333333333333 222222 11111 11 1 1 11 111111 111
lowQualScore : 777 4 1 3 88 55 0 1 3 0 2 3 1 2 111 6 4 5 1 77 77 1 5 4 1 4 1111111111 55555555555555555555555 5 1 1 0 0 44444444 55555 1 1 7777 8 1 0 0 0 111111 5 111111111111 11 8 444444444444 8 1 1 1 6 3 2 0 1 5 1 555555555 6 0 11 5 2 5 4 1 4 7 4 3 1 999999999999999999999999999999999999999999 1 888888 22 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 7 7 22 1 1 1 9999999999999999999 00 4 777777 4 88888 33 3 0 11 0 0 11 8 5 999999 88 1 6 111
lowQualScore : ... . . . .. .. . . . . . . . . ... . . . . .. .. . . . . . .......... ....................... . . . . . ........ ..... . . .... . . . . . ...... . ............ .. . ............ . . . . . . . . . . . ......... . . .. . . . . . . . . . . .......................................... . ...... .. .................................................................................................. . . .. . . . ................... .. . ...... . ..... .. . . .. . . .. . . ...... .. . . ...
lowQualScore : 555 0 2 2 88 88 0 0 2 2 0 2 2 0 777 7 2 0 9 99 99 0 0 4 0 4 9999999999 66666666666666666666666 0 0 0 6 9 55555555 00000 0 0 0000 0 4 8 8 8 666666 6 000000000000 00 0 000000000000 0 0 4 7 7 2 5 8 0 6 0 000000000 4 8 00 6 5 0 0 8 6 0 5 2 0 222222222222222222222222222222222222222222 0 555555 55 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 00 0 0 0 2222222222222222222 55 0 000000 0 55555 88 2 6 88 0 8 00 0 2 222222 33 7 7 777
consensus : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAG-----TGTATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTTN-CCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGT-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
Reference ( family-1484 ) : TAATTTATTAATTGACAAAAA---TACTATGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTNACAAGTAAAAAGATAATGACAAACGGTCACCGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCGATGTC---AACACCCTTT-CCCTCAACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTAAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAG-----TNTATGTCCCTCCCTGCAGNCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ANCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGNTAAAAAATNAAATAGAATAT--A------ATACGATGTCATACTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACACGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAANTGTAAGNAAAGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACNAGTCT-TCTCTCTCTGTTTC-CCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCCAAAGGCACTTGCAATTAGATATTACACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGNNGACGNCCGTTTCTTTACTTCANTTCTNGTATGACAACAGTGCAAA-CAC-A-TA-T-CGCTCTGCATTTAGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTAACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTNACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCCGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|1 : TAATTTATTAATTGACAAAAA---TACAAAAATGCTCGACACATAATAAATTCGATGATTAACAAGCATTTGTGTTACAAGATCCTTTCATGTAGTACAGAAACAA-GTGTTTTATTTTTGGTTACAAGTAAAGAGATAATGACAAATGGTTACTGAGTAATCAGAAAAGCTCTTGAGTCTGTGGTCTCCACAAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCTGTTTCCTTTGTTCAGCCTTTTGGAAATAAATTCATTGCAATGTCGTTAATACCCTTT-CCCTCAGCGTATTGAAGTCTGGGTTTAGTGACTG--CTCTCT--CGATA-GACTGTCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-ATGTGTCCAAAGTTTTGAACTTTAGTGCGAGGATGACAATTATATGGTGATG--------CACTTTACTAGAAGAAAAAGCAAACGAA-----TGTATGTCCTTCCCTGCAGGCTCAGG----ATCT-GTCTATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---AAAG----TC-AGTCATTGTCATTGTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGAT--------GCA--GCATCACCACAGAGAACAGTATTGGTATTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATAT--A------ATACGATGTCATA-TATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCATGTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAGTCTGTCTCTCTCTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAAATATCGCACCGACTTCGAACGCAAACTAG---AAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTTCAAATCACAA-TATT-CGCTCTGCATTTTGATAGTTAACAATATATCTATA-----TGCTCTTGTTGAATTTCAAAATGTTACGTGCATC--T--AA--GTCATAAATTACGTTTAGAAAATACTTACACGGGACTTCACAGTTTCTGGAAGTGTTGATATTATTTT-GCACATGCGCGAATGTTATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACACGTTACCAGTATTCTAAAAACATGTACCAAAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAGATTTA------TATTGAACAGAAATATTC---ATATTGCATATTTAAGTAAAGT-TAA---ATGGGATAGTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|10 : AGTTTGAGAT-AGCGACAG--CTCTCT--CCCTAAGACTATCAGTAGCGATGATTTTAA-CCTCT----------TTTTT-----------------------T-A
gi|10 : ttTCCGAAGTCTTAAACTACAGTGCGAGTATGCCAATTACATGATGATGAATTAAGTGACTTTACCGGAGGAAGAAGatcttttaaatccgcacatatggacccgcactcacggatccgaacttccgaagtcttaaactacagtgcgagtatgccaattacatgatgatgaattaagtgactttaccggaggaagaagaaga
gi|11 : ttagtttgagatagcgacagctctctccctaagactatcagtagcgatgattttaacctctttttttaatcttttaaatccgcacatatggacccgcactcacggatccgaactGCGTGAATGTAGTATC--ATGTTACGTCATACAGAAAAATTAACATTTTTTATTCATAAATGACTGATGGGGAAA-----TATCAATATaaga
gi|11 : AAATATCAATATGTTTTATTAACCAAAACCGTTGAAAGGTATATATATGTATTAAATGGAAATCATCA-TAT-----ATATCAAAATAATGTATAGCATGTGGGAAATTAGTgttttattaaccaaaaccgttgaaaggtatatatatgtattaaatggaaatcatcatatatatcaaaataatgtatagcatgtgggaaattagt
gi|12 : gcgtgaatgtagtatcatgttacgtcatacagaaaaattaacattttttattcataaatgactgatggggTGTC---AACGGCCCCT-CCATTGACGCATTCGAGTCTAGGAT-AGCGG--------------AA-------GTCAGTAACGATGA-TTTTATCCTGT----------TTTTAACCTGTACATACAGACACTCTCTC-ACGTGTCTTAAGTTTTAACCTACAGTGTAAGGATTTCACTTATATTGTGGTG--------CACTTCA
gi|13 : aggccgcctAATTTATTAATTGAAAAAAAAAATAATATGATGCTCGACACTTAATAAATTCGATTACTAACAAGCACTTGTGTTTCAAGATCCTTTTATGAAGTACAG-AACAGTTTGTTTT-TTTTTGGTTACAAATAAAAAGATAATGAC-AACGGTAACCGTGTAAT
gi|14 : AAA-CAC-A-TA-T-CGCTTTGCAGTTAGATAGTTAACAAAATATCTATA-----CACTCTTATTGAATTTTAAAATGTAAAATGCATCTAT--AA--GTC---AATTGCATATAGAAAA----TACATGGGACTTGACAGTTTCTGAAAGTAT
gi|15 : tTTCCATT-----GATTATAACTGAAATAGAATAT--ACATGTAGTACAATGCCATATTTTTTCCAATTATAAAATGCTGCATCGTTCACTAC-GGATTGCTAATTTCCTAGATACAAACATTTTAACAAGAAAAGAA----ATGTACACATATaataattatatt
gi|16 : aGTAAAATATCAATAAATTTTAATTACCAAAGCCACAGAAAAGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTACTTTGTTAATCATTTGTGGATAGGATGCTTTA
gi|17 : TA-GACTGTCAGTAGCGATGA-TTTAT-CCGGT----------TTTTAACATATGGACCCCT---------C-ACGTGTCCTAAGTTTTAGACTATAGTGCAAGGATACCACT---------------------ACTTTACCGGAAGAA
gi|18 : -TTTAA-CCTGTACATATGGACTCTCA-----------------------TCGCGTGTCCTCAGTTTTAATCTATAGTGCGAGGATACC------ATGGTGATG--------CACTTTGCCGGAAGAAggatacat
gi|19 : tagttTGTC---AACGCCCCCT-TCCTCGACGCATTGAAGTCT-GGTTTAGCGACAG--CTCTCTACTTATT-GACTGTCCGTAGCGATGC-TTTAA-CCTGggat
gi|2 : atCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATAT--A------ATACGATGTCATA-TATTTCCAGTTATAAAATGTTGTATCTTTCAATACTAGATT--CACTTGCCTAGATATAAAGTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATATTAAAATTGGGGCCATAAAATCGGTCTACATGTAGACAATGTAAA-------------------AGCTTAAACGGATGATTGAACAGTTGTTAAATGCTTCTATTAAATAAGTGTAAGTAAAGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGTCT--------CTGTTTC-CCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCCAAAGGCACTTGCAATTAGATATTACACCGGCTTCGAACGCAAACAAGAAAAAAAA---GACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTAGTATGACAACA-----------------------CTGCATTTTGATACTTTACAATATTTATATA-----TGCTTTTGTTGAATTTTAAAATGTTACGTGCATC--T--AAAAGTCATAAATTGCGTATAGAAAATACTTACACAGGACTCG-CAGTTTCTGGAAGCATTGATATTCTTTT-GCGCATGCGCAAATGCAA-ATC--CTGTTACGTCATACAT-ACAATTTACATATTTTATTTATAAATGACGGATGGAGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATATTTCAGTAAAATATTAATATA--TTATTTACCAAAGCCGCCGAAAGATTTA------TATCGAACAGAAACCATCA-TATATTGCATACTTAAGTAAAGT-TAA---ATGGGATATTAACTTGTTAATCATTCGTGAATAGGTAGCTTTAA
gi|20 : AGTTTTAAACTATTGTAAGATGATGTCAATTATATGGTGATG--------CACTTCACCGGAAGAAGAa
gi|21 : AGTGAGAGGATGCCACTAACATGGTGATG--------CACTTTACCGGAAGAAtaagaa
gi|22 : AAAA-ACTAACACGGGACTTGACATTTTTTGGAAGTGTTGATggaa
gi|3 : gtTAATTAATTAATTGACAAAAA---TACTATGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTTTAACAAGATCCTTTTGTGTAGTACAGAAACAG-GTG-----------GTAACAAGTAAAAAGTTAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCATTTCCTTTGTTCAGTCTTATGG-AATAAAATCATTGCAATGTC---AACACCCTTT-CCCTC-ACGTATTAAAGTCTGGTTTTAGTGGCTGCTCTCTCT--CAATA-GACTGCCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-TTGTGTCCAAAGTTTTGAGCTATCATGCGAGGATGACAATTATATGGTGATG--------AACTTTACTAGAAGAAAAAGCAAACAAGTATAATTTATGTCCCTCCCTGCAGACTTGGG----ATCTAGTCACTGATGT--TTC---CAAAGT-------CAGTCACTGTCAATAACTGACATGCCTT-TT------AC----TCTTGTCAGTATCATTTTTCCAAGCTGA-ATATATTGGGAACATGTCAGTTCTGTACAGTATACAGATATGTCAGAGCACTGCATCACCACAGAGAATAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATTAA------ATACGATTATATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTT--CTAGATACAAACCTTTGAACCAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTGAAGTTCTATATGGCACGTATAAGCTTTAACGGATGtta
gi|4 : TTTGAACCAGAAAAAAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATCATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACATGTATAAGCTTTAACGGATGATTGAAAAGTTGTTACATGCTTCTATTAAATAACTGTAAGAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCA---T-TCTCTCTCTGTTTA-CTGGt
gi|4 : GGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGATGACGATCGTTTCTTTACTTTATTTCTCGTATGACAACAGTGCAAAACAC-AATA-TTCATTCTGCATTTAGATAGTTAACAATATATCTATAATTTATGCTCTTGTTGAATTTTAAAATGTAACATGCATC--TCAAA--GTCATAAATTGCATATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTGGTATTCTTTTTGCGCATATGCGAATGTAATATC--CTTTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGG-AAACCCGTTACCAGTATTCTGAAAACATGAACAAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCTGCGAAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGGTTTAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcttcgaacgcaaacaagaaaaaaaaaaagacgtacagatgacgatcgtttctttactttatttctcgtatgacaacagtgcaaaacacaatattcattctgcatttagatagttaacaatatatctataatttatgctcttgttgaattttaaaatgtaacatgcatctcaaagtcataaattgcatatagaaaatacttacacgggactttacagtttctggaagtgttggtattctttttgcgcatatgcgaatgtaatatccttttacgtcatacagacaatttacatattttatttataaatgacggatgggaaacccgttaccagtattctgaaaacatgaacaaataattcagtaaaatatcaatatattttatttaccaaagctgcgaaaaggtttatattgaacagaaatcatcatatattgcatatttaagtaaagttaaatgggatattagtttgttaatcattcgtggataggttggttta
gi|5 : tttgaaccagaaaaaaagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagatatcataaaattggggccataaaattggtctacatgtagacaatgtaaagttctatatgacatgtataagctttaacggatgattgaaaagttgttacatgcttctattaaataactgtaagaaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccattctctctctgtttactggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAT----ACCTCGTCATTG------------ATG--TT-TCC---GAAG----TC-AGTCCCTGTCA
gi|5 : GTCAATATCATTTTTCCATGCTGA-ATATATTAGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGAATCACCACAGAGAACAGTATTGGTGTTTAGACATCAGTTGGTCCAGTGTGACAGTTCCATTTCCCAGTTAAAAA-TGAAATAGAATAT--A------TTACGTTGTAATACTATTTCTTGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGAACATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGGTATAATAAAATTTGGGCCATAAAATTGGTCTACATATAGACAATGTAACTTTCTTTATGACATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAA-----TGC-GGTGAAAC---------CACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAA---C-TCTCTCTCTGTTTA-CCGGataactgatatgccttttactcttgtcaatatcatttttccatgctgaatatattaggaacaggtcagttctgtacagcatacagatatgtcagagcactgaatcaccacagagaacagtattggtgtttagacatcagttggtccagtgtgacagttccatttcccagttaaaaatgaaatagaatatattacgttgtaatactatttcttgttataaaatgttgcatctttcaatactagatttactttcctagatacaaacttttgaaccagaaaataagaacatgtacatatataattgcaacacacaaaaaggttggtacacagaggtataataaaatttgggccataaaattggtctacatatagacaatgtaactttctttatgacatgtataagctttaacggatgattgaacagttgttacatgcttctattaatgcggtgaaaccacccggacgaaattgtattggtacgaaacctccaacaactctctctctgtttaccgg
gi|6 : aatacctcgtcattgatgtttccgaagtcagtccctgtcaataactgatatgccttttactcttTCCACAAGCTCATAATCATCCACAATAACATTAAACAGTCATCATTTATTCTGTTTCCTTCGTCCAGTCTTATGGAAATAAAGTCATTGCAATGTC---AATACCCTTT-CCCTCAACGTATTAAAGTCTGGGTTTAGTAGCTG--CTCTCT--CGATA-GACTGTCAGTTGCGATGA-TATAA-CTTGT----------TTTTA-----------------------T-ACGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGGCAATTATATGGTGATG--------CACTATACCAGAAGAAAAAGCAAACGAG-----TGTATGTCCCTCCCTGCAGGCTCAGG----ATCT-GTCCATGATATTCTTCACACAAACTCAGGATCT-GTCCATG------------ATA--TTCTTCACAGAAAATACCT-AGTCACTG--ATGTTTCCAA
gi|6 : GTCAATATCATTTTTCAAAGCTGA-ATATATTGAGAACAGGTTAGTTCTGTACAGCATACAGAagtcagtcactgtcaataactgacatggcttttactattgtcaatatcatttttcaaagctgaatatattgagaacaggttagttctgtacagcatacaga
gi|7 : tccacaagctcataatcatccacaataacattaaacagtcatcatttattctgtttccttcgtccagtcttatggaaataaagtcattgcaatgtcaataccctttccctcaacgtattaaagtctgggtttagtagctgctctctcgatagactgtcagttgcgatgatataacttgtttttatacgtgtccaaagttttgaactatagtgcgaggatggcaattatatggtgatgcactataccagaagaaaaagcaaacgagtgtatgtccctccctgcaggctcaggatctgtccatgatattcttcacacaaactcaggatctgtccatgatattcttcacagaaaatacctagtcactgatgtttccaaagtcagtcactgtcaataactgacatggcttttactattTAATTTATTAAGTGACAAAAA---TACTAAGACGCTAGACACATAATAAATTCAATAATTAACAAGCATTTGTGTTACAAGATCCTTCTATGTAGTACAGAAACAG--T-TTTT-TTTTTGGTCACAAGTAAAAAGATAATGACAAACGGTCACTGAATGATCAGAAAAGCTCTTGAGTCTGTGGCCTTCATGAGATCAAAATTATCCACAATAACATTTAACATCCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCGATGTC---AACAAACTTTCCCCTTAACGTATTAATGTCTGGGTTTAGTGGCTG--CTCTCT--CTACA-GACTGTCAGTAGCGATGA-TATAG-CCTGT----------TTTTA-----------------------T-CTGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGACAATTATATAGTGATG--------CACTTAAC
gi|7 : CTCGGG----ATCT-GCCCATGATATTCTTCATACAAAtaactcgggatctgcccatgatattcttcatacaaa
gi|8 : taatttattaagtgacaaaaatactaagacgctagacacataataaattcaataattaacaagcatttgtgttacaagatccttctatgtagtacagaaacagttttttttttggtcacaagtaaaaagataatgacaaacggtcactgaatgatcagaaaagctcttgagtctgtggccttcatgagatcaaaattatccacaataacatttaacatccatcatttattccgtttccttcgttcagtcttatggaaataaaatcattgcgatgtcaacaaactttccccttaacgtattaatgtctgggtttagtggctgctctctctacagactgtcagtagcgatgatatagcctgtttttatctgtgtccaaagttttgaactatagtgcgaggatgacaattatatagtgatgcacttaactaaGGATGTGTTGATATTCTTTT-GCACATGCGCGAATGTATTATTATCTGTTACGTCATACAG-GCAATTTACATATTTTATTTATAATTGACGGATGTGGAAGCCCGTTACCGGTATTCTGAAAGCACGTACCAATTATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCAGAAAGGTATA------TTTTGAAAAGAAGTCATTGTTACGTTACATAATAAAGTAATGT-------GTGG--CATTAGTTTGTAAATCATTCGTTGATAGGTTGCTTTA
gi|9 : ACTTTACTGGAAGATAAATAAAACGAG-----TATATGTTCCTCCCTGCAGTATCAGGGTATATCT-GTCTATGATATTCTTCACAC-AAAT----AACAAGTGACTA------------ATG--TT-TCG---GCAG----TC-AGTCATTGTCAAT----CA--CTGATATGTATT
gi|9 : GTCCATATCATTTTTCCAAGTTGA-ATTTATTGGGAACAGGTAAGTTCttactcttgtccatatcatttttccaagttgaatttattgggaacaggtaagttc
Alignments
lowQualScore : 111 11 1 111 2222222222 77777777777777777777777 11111111 22222 1111 222222 444444444444 11 222222222222 222222222 11 333333333 222222 11 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 55555555555555555555 222222 11111 11 1 1 11 111111 111
lowQualScore : 777 1 1 3 88 55 0 1 3 0 3 1 111 0 6 6 5 1 77 77 1 5 4 1 4 1111111111 55555555555555555555555 5 1 1 0 0 44444444 55555 0 7777 8 1 0 0 0 111111 5 111111111111 11 8 444444444444 8 1 1 1 6 3 2 0 1 0 555555555 44 0 11 5 1 5 4 1 7 2 3 666666666 888888 11 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 99999999999999999999 00 1 777777 1 88888 33 3 0 0 0 0 11 8 1 999999 88 1 6 111
lowQualScore : ... . . . .. .. . . . . . . ... . . . . . .. .. . . . . . .......... ....................... . . . . . ........ ..... . .... . . . . . ...... . ............ .. . ............ . . . . . . . . . . ......... .. . .. . . . . . . . . ......... ...... .. .................................................................................. . . .................... .. . ...... . ..... .. . . . . . .. . . ...... .. . . ...
lowQualScore : 555 0 2 2 88 88 0 2 2 2 2 2 777 7 7 3 0 9 99 99 0 0 4 0 4 9999999999 66666666666666666666666 0 0 0 6 9 55555555 00000 2 0000 0 4 8 8 8 000000 6 000000000000 00 0 000000000000 0 0 4 7 7 2 5 8 4 8 000000000 66 8 00 6 0 0 0 4 0 5 2 222222222 555555 00 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 22222222222222222222 55 0 000000 0 55555 88 2 6 8 0 8 00 0 0 222222 33 7 7 777
consensus : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-ACCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
Reference ( family-1484 ) : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-NCCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|1 : TAATTTATTAATTGACAAAAA---TACAAAAATGCTCGACACATAATAAATTCGATGATTAACAAGCATTTGTGTTACAAGATCCTTTCATGTAGTACAGAAACAA-GTGTTTTATTTTTGGTTACAAGTAAAGAGATAATGACAAATGGTTACTGAGTAATCAGAAAAGCTCTTGAGTCTGTGGTCTCCACAAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCTGTTTCCTTTGTTCAGCCTTTTGGAAATAAATTCATTGCAATGTCGTTAATACCCTTT-CCCTCAGCGTATTGAAGTCTGGGTTTAGTGACTG--CTCTCT--CGATA-GACTGTCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-ATGTGTCCAAAGTTTTGAACTTTAGTGCGAGGATGACAATTATATGGTGATG--------CACTTTACTAGAAGAAAAAGCAAACGAATG-----TATGTCCTTCCCTGCAGGCTCAGG----ATCT-GTCTATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---AAAG----TC-AGTCATTGTCATTGTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGAT--------GCA--GCATCACCACAGAGAACAGTATTGGTATTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATAT--A------ATACGATGTCATA-TATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCATGTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAGTCTGTCTCTCTCTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAAATATCGCACCGACTTCGAACGCAAACTAG---AAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTT-CAAATCACAA-TATT-CGCTCTGCATTTTGATAGTTAACAATATATCTATA-----TGCTCTTGTTGAATTTCAAAATGTTACGTGCATC--T--AA--GTCATAAATTACGTTTAGAAAATACTTACACGGGACTTCACAGTTTCTGGAAGTGTTGATATTATTTT-GCACATGCGCGAATGTTATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACACGTTACCAGTATTCTAAAAACATGTACCAAAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAGATTTA------TATTGAACAGAAATATTC---ATATTGCATATTTAAGTAAAGT-TAA---ATGGGATAGTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|10 : AGTTTGAGAT-AGCGACAG--CTCTCT--CCCTAAGACTATCAGTAGCGATGATTTTAA-CCTCT----------TTTTT-----------------------T-A
gi|10 : ttTCCGAAGTCTTAAACTACAGTGCGAGTATGCCAATTACATGATGATGAATTAAGTGACTTTACCGGAGGAAGAAGatcttttaaatccgcacatatggacccgcactcacggatccgaacttccgaagtcttaaactacagtgcgagtatgccaattacatgatgatgaattaagtgactttaccggaggaagaagaaga
gi|11 : ttagtttgagatagcgacagctctctccctaagactatcagtagcgatgattttaacctctttttttaatcttttaaatccgcacatatggacccgcactcacggatccgaactGCGTGAATGTAGTATC--ATGTTACGTCATACAGAAAAATTAACATTTTTTATTCATAAATGACTGATGGGGAAA-----TATCAATATaaga
gi|11 : AAATATCAATATGTTTTATTAACCAAAACCGTTGAAAGGTATATATATGTATTAAATGGAAATCATCA-TAT-----ATATCAAAATAATGTATAGCATGTGGGAAATTAGTgttttattaaccaaaaccgttgaaaggtatatatatgtattaaatggaaatcatcatatatatcaaaataatgtatagcatgtgggaaattagt
gi|12 : gcgtgaatgtagtatcatgttacgtcatacagaaaaattaacattttttattcataaatgactgatggggTGTC---AACGGCCCCT-CCATTGACGCATTCGAGTCTAGGAT-AGCGG--------------AA-------GTCAGTAACGATGA-TTTTATCCTGT----------TTTTAACCTGTACATACAGACACTCTCTC-ACGTGTCTTAAGTTTTAACCTACAGTGTAAGGATTTCACTTATATTGTGGTG--------CACTTCA
gi|13 : aggccgcctAATTTATTAATTGAAAAAAAAAATAATATGATGCTCGACACTTAATAAATTCGATTACTAACAAGCACTTGTGTTTCAAGATCCTTTTATGAAGTACAG-AACAGTTTGTTTT-TTTTTGGTTACAAATAAAAAGATAATGAC-AACGGTAACCGTGTAAT
gi|14 : AAA-CAC-A-TA-T-CGCTTTGCAGTTAGATAGTTAACAAAATATCTATA-----CACTCTTATTGAATTTTAAAATGTAAAATGCATCTAT--AA--GTC---AATTGCATATAGAAAA----TACATGGGACTTGACAGTTTCTGAAAGTAT
gi|15 : tTTCCATT-----GATTATAACTGAAATAGAATAT--ACATGTAGTACAATGCCATATTTTTTCCAATTATAAAATGCTGCATCGTTCACTAC-GGATTGCTAATTTCCTAGATACAAACATTTTAACAAGAAAAGAA----ATGTACACATATaataattatatt
gi|16 : aGTAAAATATCAATAAATTTTAATTACCAAAGCCACAGAAAAGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTACTTTGTTAATCATTTGTGGATAGGATGCTTTA
gi|17 : TA-GACTGTCAGTAGCGATGA-TTTAT-CCGGT----------TTTTAACATATGGACCCCT---------C-ACGTGTCCTAAGTTTTAGACTATAGTGCAAGGATACCACT---------------------ACTTTACCGGAAGAA
gi|18 : -TTTAA-CCTGTACATATGGACTCTCA-----------------------TCGCGTGTCCTCAGTTTTAATCTATAGTGCGAGGATACC------ATGGTGATG--------CACTTTGCCGGAAGAAggatacat
gi|19 : tagttTGTC---AACGCCCCCT-TCCTCGACGCATTGAAGTCT-GGTTTAGCGACAG--CTCTCTACTTATT-GACTGTCCGTAGCGATGC-TTTAA-CCTGggat
gi|2 : atCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATAT--A------ATACGATGTCATAT-ATTTCCAGTTATAAAATGTTGTATCTTTCAATACTAGATT--CACTTGCCTAGATATAAAGTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATATTAAAATTGGGGCCATAAAATCGGTCTACATGTAGACAATGTAAA-------------------AGCTTAAACGGATGATTGAACAGTTGTTAAATGCTTCTATTAAATAAGTGTAAGTAAAGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGTCT--------CTGTTT-CCCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCCAAAGGCACTTGCAATTAGATATTACACCGGCTTCGAACGCAAACAAGAAAAAAAA---GACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTAGTATGACAACA------------------------CTGCATTTTGATACTTTACAATATTTATATA-----TGCTTTTGTTGAATTTTAAAATGTTACGTGCATC--T--AAAAGTCATAAATTGCGTATAGAAAATACTTACACAGGACTCG-CAGTTTCTGGAAGCATTGATATTCTTTT-GCGCATGCGCAAATGCAA-ATC--CTGTTACGTCATACAT-ACAATTTACATATTTTATTTATAAATGACGGATGGAGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATATTTCAGTAAAATATTAATATA--TTATTTACCAAAGCCGCCGAAAGATTTA------TATCGAACAGAAACCATCA-TATATTGCATACTTAAGTAAAGT-TAA---ATGGGATATTAACTTGTTAATCATTCGTGAATAGGTAGCTTTAA
gi|20 : AGTTTTAAACTATTGTAAGATGATGTCAATTATATGGTGATG--------CACTTCACCGGAAGAAGAa
gi|21 : AGTGAGAGGATGCCACTAACATGGTGATG--------CACTTTACCGGAAGAAtaagaa
gi|22 : AAAA-ACTAACACGGGACTTGACATTTTTTGGAAGTGTTGATggaa
gi|3 : gtTAATTAATTAATTGACAAAAA---TACTATGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTTTAACAAGATCCTTTTGTGTAGTACAGAAACAG-GTG-----------GTAACAAGTAAAAAGTTAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCATTTCCTTTGTTCAGTCTTATGG-AATAAAATCATTGCAATGTC---AACACCCTTT-CCCTC-ACGTATTAAAGTCTGGTTTTAGTGGCTGCTCTCTCT--CAATA-GACTGCCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-TTGTGTCCAAAGTTTTGAGCTATCATGCGAGGATGACAATTATATGGTGATG--------AACTTTACTAGAAGAAAAAGCAAACAAGTATAATTTATGTCCCTCCCTGCAGACTTGGG----ATCTAGTCACTGATGT--TTC---CAAAGT-------CAGTCACTGTCAATAACTGACATGCCTT-TT------AC----TCTTGTCAGTATCATTTTTCCAAGCTGA-ATATATTGGGAACATGTCAGTTCTGTACAGTATACAGATATGTCAGAGCACTGCATCACCACAGAGAATAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATTAA------ATACGATTATATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTT--CTAGATACAAACCTTTGAACCAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTGAAGTTCTATATGGCACGTATAAGCTTTAACGGATGtta
gi|4 : TTTGAACCAGAAAAAAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATCATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACATGTATAAGCTTTAACGGATGATTGAAAAGTTGTTACATGCTTCTATTAAATAACTGTAAGAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCA---T-TCTCTCTCTGTTT-ACTGGt
gi|4 : GGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGATGACGATCGTTTCTTTACTTTATTTCTCGTATGACAACAG-TGCAAAACAC-AATA-TTCATTCTGCATTTAGATAGTTAACAATATATCTATAATTTATGCTCTTGTTGAATTTTAAAATGTAACATGCATC--TCAAA--GTCATAAATTGCATATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTGGTATTCTTTTTGCGCATATGCGAATGTAATATC--CTTTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGG-AAACCCGTTACCAGTATTCTGAAAACATGAACAAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCTGCGAAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGGTTTAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcttcgaacgcaaacaagaaaaaaaaaaagacgtacagatgacgatcgtttctttactttatttctcgtatgacaacagtgcaaaacacaatattcattctgcatttagatagttaacaatatatctataatttatgctcttgttgaattttaaaatgtaacatgcatctcaaagtcataaattgcatatagaaaatacttacacgggactttacagtttctggaagtgttggtattctttttgcgcatatgcgaatgtaatatccttttacgtcatacagacaatttacatattttatttataaatgacggatgggaaacccgttaccagtattctgaaaacatgaacaaataattcagtaaaatatcaatatattttatttaccaaagctgcgaaaaggtttatattgaacagaaatcatcatatattgcatatttaagtaaagttaaatgggatattagtttgttaatcattcgtggataggttggttta
gi|5 : tttgaaccagaaaaaaagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagatatcataaaattggggccataaaattggtctacatgtagacaatgtaaagttctatatgacatgtataagctttaacggatgattgaaaagttgttacatgcttctattaaataactgtaagaaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccattctctctctgtttactggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAT----ACCTCGTCATTG------------ATG--TT-TCC---GAAG----TC-AGTCCCTGTCA
gi|5 : GTCAATATCATTTTTCCATGCTGA-ATATATTAGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGAATCACCACAGAGAACAGTATTGGTGTTTAGACATCAGTTGGTCCAGTGTGACAGTTCCATTTCCCAGTTAAAA-ATGAAATAGAATAT--A------TTACGTTGTAATACTATTTCTTGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGAACATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGGTATAATAAAATTTGGGCCATAAAATTGGTCTACATATAGACAATGTAACTTTCTTTATGACATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAA-----TGC-GGTGAAAC---------CACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAA---C-TCTCTCTCTGTTT-ACCGGataactgatatgccttttactcttgtcaatatcatttttccatgctgaatatattaggaacaggtcagttctgtacagcatacagatatgtcagagcactgaatcaccacagagaacagtattggtgtttagacatcagttggtccagtgtgacagttccatttcccagttaaaaatgaaatagaatatattacgttgtaatactatttcttgttataaaatgttgcatctttcaatactagatttactttcctagatacaaacttttgaaccagaaaataagaacatgtacatatataattgcaacacacaaaaaggttggtacacagaggtataataaaatttgggccataaaattggtctacatatagacaatgtaactttctttatgacatgtataagctttaacggatgattgaacagttgttacatgcttctattaatgcggtgaaaccacccggacgaaattgtattggtacgaaacctccaacaactctctctctgtttaccgg
gi|6 : aatacctcgtcattgatgtttccgaagtcagtccctgtcaataactgatatgccttttactcttTCCACAAGCTCATAATCATCCACAATAACATTAAACAGTCATCATTTATTCTGTTTCCTTCGTCCAGTCTTATGGAAATAAAGTCATTGCAATGTC---AATACCCTTT-CCCTCAACGTATTAAAGTCTGGGTTTAGTAGCTG--CTCTCT--CGATA-GACTGTCAGTTGCGATGA-TATAA-CTTGT----------TTTTA-----------------------T-ACGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGGCAATTATATGGTGATG--------CACTATACCAGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCAGG----ATCT-GTCCATGATATTCTTCACACAAACTCAGGATCT-GTCCATG------------ATA--TTCTTCACAGAAAATACCT-AGTCACTG--ATGTTTCCAA
gi|6 : GTCAATATCATTTTTCAAAGCTGA-ATATATTGAGAACAGGTTAGTTCTGTACAGCATACAGAagtcagtcactgtcaataactgacatggcttttactattgtcaatatcatttttcaaagctgaatatattgagaacaggttagttctgtacagcatacaga
gi|7 : tccacaagctcataatcatccacaataacattaaacagtcatcatttattctgtttccttcgtccagtcttatggaaataaagtcattgcaatgtcaataccctttccctcaacgtattaaagtctgggtttagtagctgctctctcgatagactgtcagttgcgatgatataacttgtttttatacgtgtccaaagttttgaactatagtgcgaggatggcaattatatggtgatgcactataccagaagaaaaagcaaacgagtgtatgtccctccctgcaggctcaggatctgtccatgatattcttcacacaaactcaggatctgtccatgatattcttcacagaaaatacctagtcactgatgtttccaaagtcagtcactgtcaataactgacatggcttttactattTAATTTATTAAGTGACAAAAA---TACTAAGACGCTAGACACATAATAAATTCAATAATTAACAAGCATTTGTGTTACAAGATCCTTCTATGTAGTACAGAAACAG--T-TTTT-TTTTTGGTCACAAGTAAAAAGATAATGACAAACGGTCACTGAATGATCAGAAAAGCTCTTGAGTCTGTGGCCTTCATGAGATCAAAATTATCCACAATAACATTTAACATCCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCGATGTC---AACAAACTTTCCCCTTAACGTATTAATGTCTGGGTTTAGTGGCTG--CTCTCT--CTACA-GACTGTCAGTAGCGATGA-TATAG-CCTGT----------TTTTA-----------------------T-CTGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGACAATTATATAGTGATG--------CACTTAAC
gi|7 : CTCGGG----ATCT-GCCCATGATATTCTTCATACAAAtaactcgggatctgcccatgatattcttcatacaaa
gi|8 : taatttattaagtgacaaaaatactaagacgctagacacataataaattcaataattaacaagcatttgtgttacaagatccttctatgtagtacagaaacagttttttttttggtcacaagtaaaaagataatgacaaacggtcactgaatgatcagaaaagctcttgagtctgtggccttcatgagatcaaaattatccacaataacatttaacatccatcatttattccgtttccttcgttcagtcttatggaaataaaatcattgcgatgtcaacaaactttccccttaacgtattaatgtctgggtttagtggctgctctctctacagactgtcagtagcgatgatatagcctgtttttatctgtgtccaaagttttgaactatagtgcgaggatgacaattatatagtgatgcacttaactaaGGATGTGTTGATATTCTTTT-GCACATGCGCGAATGTATTATTATCTGTTACGTCATACAG-GCAATTTACATATTTTATTTATAATTGACGGATGTGGAAGCCCGTTACCGGTATTCTGAAAGCACGTACCAATTATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCAGAAAGGTATA------TTTTGAAAAGAAGTCATTGTTACGTTACATAATAAAGTAATGT-------GTGG--CATTAGTTTGTAAATCATTCGTTGATAGGTTGCTTTA
gi|9 : ACTTTACTGGAAGATAAATAAAACGAGTA-----TATGTTCCTCCCTGCAGTATCAGGGTATATCT-GTCTATGATATTCTTCACAC-AAAT----AACAAGTGACTA------------ATG--TT-TCG---GCAG----TC-AGTCATTGTCAAT----CA--CTGATATGTATT
gi|9 : GTCCATATCATTTTTCCAAGTTGA-ATTTATTGGGAACAGGTAAGTTCttactcttgtccatatcatttttccaagttgaatttattgggaacaggtaagttc
Alignments
lowQualScore : 111 11 1 111 2222222222 77777777777777777777777 11111111 22222 1111 222222 444444444444 11 222222222222 222222222 11 333333333 222222 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 55555555555555555555 222222 11111 11 1 1 11 111111 111
lowQualScore : 777 1 1 3 88 55 0 1 3 0 3 1 111 0 6 6 5 1 77 77 1 5 4 1 4 1111111111 55555555555555555555555 5 1 1 0 0 44444444 55555 0 7777 8 1 0 0 0 111111 5 111111111111 11 8 444444444444 8 1 1 1 6 3 2 0 1 0 555555555 44 0 11 5 1 5 4 1 7 2 3 666666666 888888 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 99999999999999999999 00 1 777777 1 88888 33 3 0 0 0 0 11 8 1 999999 88 1 6 111
lowQualScore : ... . . . .. .. . . . . . . ... . . . . . .. .. . . . . . .......... ....................... . . . . . ........ ..... . .... . . . . . ...... . ............ .. . ............ . . . . . . . . . . ......... .. . .. . . . . . . . . ......... ...... . .................................................................................. . . .................... .. . ...... . ..... .. . . . . . .. . . ...... .. . . ...
lowQualScore : 555 0 2 2 88 88 0 2 2 2 2 2 777 7 7 3 0 9 99 99 0 0 4 0 4 9999999999 66666666666666666666666 0 0 0 6 9 55555555 00000 2 0000 0 4 8 8 8 000000 6 000000000000 00 0 000000000000 0 0 4 7 7 2 5 8 4 8 000000000 66 8 00 6 0 0 0 4 0 5 2 222222222 555555 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 22222222222222222222 55 0 000000 0 55555 88 2 6 8 0 8 00 0 0 222222 33 7 7 777
consensus : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-ACCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
Reference ( family-1484 ) : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-ACCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|1 : TAATTTATTAATTGACAAAAA---TACAAAAATGCTCGACACATAATAAATTCGATGATTAACAAGCATTTGTGTTACAAGATCCTTTCATGTAGTACAGAAACAA-GTGTTTTATTTTTGGTTACAAGTAAAGAGATAATGACAAATGGTTACTGAGTAATCAGAAAAGCTCTTGAGTCTGTGGTCTCCACAAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCTGTTTCCTTTGTTCAGCCTTTTGGAAATAAATTCATTGCAATGTCGTTAATACCCTTT-CCCTCAGCGTATTGAAGTCTGGGTTTAGTGACTG--CTCTCT--CGATA-GACTGTCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-ATGTGTCCAAAGTTTTGAACTTTAGTGCGAGGATGACAATTATATGGTGATG--------CACTTTACTAGAAGAAAAAGCAAACGAATG-----TATGTCCTTCCCTGCAGGCTCAGG----ATCT-GTCTATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---AAAG----TC-AGTCATTGTCATTGTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGAT--------GCA--GCATCACCACAGAGAACAGTATTGGTATTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATAT--A------ATACGATGTCATA-TATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCATGTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAGTCTGTCTCTCTCTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAAATATCGCACCGACTTCGAACGCAAACTAG---AAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTT-CAAATCACAA-TATT-CGCTCTGCATTTTGATAGTTAACAATATATCTATA-----TGCTCTTGTTGAATTTCAAAATGTTACGTGCATC--T--AA--GTCATAAATTACGTTTAGAAAATACTTACACGGGACTTCACAGTTTCTGGAAGTGTTGATATTATTTT-GCACATGCGCGAATGTTATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACACGTTACCAGTATTCTAAAAACATGTACCAAAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAGATTTA------TATTGAACAGAAATATTC---ATATTGCATATTTAAGTAAAGT-TAA---ATGGGATAGTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|10 : AGTTTGAGAT-AGCGACAG--CTCTCT--CCCTAAGACTATCAGTAGCGATGATTTTAA-CCTCT----------TTTTT-----------------------T-A
gi|10 : ttTCCGAAGTCTTAAACTACAGTGCGAGTATGCCAATTACATGATGATGAATTAAGTGACTTTACCGGAGGAAGAAGatcttttaaatccgcacatatggacccgcactcacggatccgaacttccgaagtcttaaactacagtgcgagtatgccaattacatgatgatgaattaagtgactttaccggaggaagaagaaga
gi|11 : ttagtttgagatagcgacagctctctccctaagactatcagtagcgatgattttaacctctttttttaatcttttaaatccgcacatatggacccgcactcacggatccgaactGCGTGAATGTAGTATC--ATGTTACGTCATACAGAAAAATTAACATTTTTTATTCATAAATGACTGATGGGGAAA-----TATCAATATaaga
gi|11 : AAATATCAATATGTTTTATTAACCAAAACCGTTGAAAGGTATATATATGTATTAAATGGAAATCATCA-TAT-----ATATCAAAATAATGTATAGCATGTGGGAAATTAGTgttttattaaccaaaaccgttgaaaggtatatatatgtattaaatggaaatcatcatatatatcaaaataatgtatagcatgtgggaaattagt
gi|12 : gcgtgaatgtagtatcatgttacgtcatacagaaaaattaacattttttattcataaatgactgatggggTGTC---AACGGCCCCT-CCATTGACGCATTCGAGTCTAGGAT-AGCGG--------------AA-------GTCAGTAACGATGA-TTTTATCCTGT----------TTTTAACCTGTACATACAGACACTCTCTC-ACGTGTCTTAAGTTTTAACCTACAGTGTAAGGATTTCACTTATATTGTGGTG--------CACTTCA
gi|13 : aggccgcctAATTTATTAATTGAAAAAAAAAATAATATGATGCTCGACACTTAATAAATTCGATTACTAACAAGCACTTGTGTTTCAAGATCCTTTTATGAAGTACAG-AACAGTTTGTTTT-TTTTTGGTTACAAATAAAAAGATAATGAC-AACGGTAACCGTGTAAT
gi|14 : AAA-CAC-A-TA-T-CGCTTTGCAGTTAGATAGTTAACAAAATATCTATA-----CACTCTTATTGAATTTTAAAATGTAAAATGCATCTAT--AA--GTC---AATTGCATATAGAAAA----TACATGGGACTTGACAGTTTCTGAAAGTAT
gi|15 : tTTCCATT-----GATTATAACTGAAATAGAATAT--ACATGTAGTACAATGCCATATTTTTTCCAATTATAAAATGCTGCATCGTTCACTAC-GGATTGCTAATTTCCTAGATACAAACATTTTAACAAGAAAAGAA----ATGTACACATATaataattatatt
gi|16 : aGTAAAATATCAATAAATTTTAATTACCAAAGCCACAGAAAAGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTACTTTGTTAATCATTTGTGGATAGGATGCTTTA
gi|17 : TA-GACTGTCAGTAGCGATGA-TTTAT-CCGGT----------TTTTAACATATGGACCCCT---------C-ACGTGTCCTAAGTTTTAGACTATAGTGCAAGGATACCACT---------------------ACTTTACCGGAAGAA
gi|18 : -TTTAA-CCTGTACATATGGACTCTCA-----------------------TCGCGTGTCCTCAGTTTTAATCTATAGTGCGAGGATACC------ATGGTGATG--------CACTTTGCCGGAAGAAggatacat
gi|19 : tagttTGTC---AACGCCCCCT-TCCTCGACGCATTGAAGTCT-GGTTTAGCGACAG--CTCTCTACTTATT-GACTGTCCGTAGCGATGC-TTTAA-CCTGggat
gi|2 : atCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATAT--A------ATACGATGTCATAT-ATTTCCAGTTATAAAATGTTGTATCTTTCAATACTAGATT--CACTTGCCTAGATATAAAGTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATATTAAAATTGGGGCCATAAAATCGGTCTACATGTAGACAATGTAAA-------------------AGCTTAAACGGATGATTGAACAGTTGTTAAATGCTTCTATTAAATAAGTGTAAGTAAAGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGTCT--------CTGTTT-CCCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCCAAAGGCACTTGCAATTAGATATTACACCGGCTTCGAACGCAAACAAGAAAAAAAA---GACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTAGTATGACAACA------------------------CTGCATTTTGATACTTTACAATATTTATATA-----TGCTTTTGTTGAATTTTAAAATGTTACGTGCATC--T--AAAAGTCATAAATTGCGTATAGAAAATACTTACACAGGACTCG-CAGTTTCTGGAAGCATTGATATTCTTTT-GCGCATGCGCAAATGCAA-ATC--CTGTTACGTCATACAT-ACAATTTACATATTTTATTTATAAATGACGGATGGAGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATATTTCAGTAAAATATTAATATA--TTATTTACCAAAGCCGCCGAAAGATTTA------TATCGAACAGAAACCATCA-TATATTGCATACTTAAGTAAAGT-TAA---ATGGGATATTAACTTGTTAATCATTCGTGAATAGGTAGCTTTAA
gi|20 : AGTTTTAAACTATTGTAAGATGATGTCAATTATATGGTGATG--------CACTTCACCGGAAGAAGAa
gi|21 : AGTGAGAGGATGCCACTAACATGGTGATG--------CACTTTACCGGAAGAAtaagaa
gi|22 : AAAA-ACTAACACGGGACTTGACATTTTTTGGAAGTGTTGATggaa
gi|3 : gtTAATTAATTAATTGACAAAAA---TACTATGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTTTAACAAGATCCTTTTGTGTAGTACAGAAACAG-GTG-----------GTAACAAGTAAAAAGTTAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCATTTCCTTTGTTCAGTCTTATGG-AATAAAATCATTGCAATGTC---AACACCCTTT-CCCTC-ACGTATTAAAGTCTGGTTTTAGTGGCTGCTCTCTCT--CAATA-GACTGCCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-TTGTGTCCAAAGTTTTGAGCTATCATGCGAGGATGACAATTATATGGTGATG--------AACTTTACTAGAAGAAAAAGCAAACAAGTATAATTTATGTCCCTCCCTGCAGACTTGGG----ATCTAGTCACTGATGT--TTC---CAAAGT-------CAGTCACTGTCAATAACTGACATGCCTT-TT------AC----TCTTGTCAGTATCATTTTTCCAAGCTGA-ATATATTGGGAACATGTCAGTTCTGTACAGTATACAGATATGTCAGAGCACTGCATCACCACAGAGAATAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATTAA------ATACGATTATATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTT--CTAGATACAAACCTTTGAACCAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTGAAGTTCTATATGGCACGTATAAGCTTTAACGGATGtta
gi|4 : TTTGAACCAGAAAAAAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATCATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACATGTATAAGCTTTAACGGATGATTGAAAAGTTGTTACATGCTTCTATTAAATAACTGTAAGAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCA---T-TCTCTCTCTGTTT-ACTGGt
gi|4 : GGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGATGACGATCGTTTCTTTACTTTATTTCTCGTATGACAACAG-TGCAAAACAC-AATA-TTCATTCTGCATTTAGATAGTTAACAATATATCTATAATTTATGCTCTTGTTGAATTTTAAAATGTAACATGCATC--TCAAA--GTCATAAATTGCATATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTGGTATTCTTTTTGCGCATATGCGAATGTAATATC--CTTTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGG-AAACCCGTTACCAGTATTCTGAAAACATGAACAAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCTGCGAAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGGTTTAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcttcgaacgcaaacaagaaaaaaaaaaagacgtacagatgacgatcgtttctttactttatttctcgtatgacaacagtgcaaaacacaatattcattctgcatttagatagttaacaatatatctataatttatgctcttgttgaattttaaaatgtaacatgcatctcaaagtcataaattgcatatagaaaatacttacacgggactttacagtttctggaagtgttggtattctttttgcgcatatgcgaatgtaatatccttttacgtcatacagacaatttacatattttatttataaatgacggatgggaaacccgttaccagtattctgaaaacatgaacaaataattcagtaaaatatcaatatattttatttaccaaagctgcgaaaaggtttatattgaacagaaatcatcatatattgcatatttaagtaaagttaaatgggatattagtttgttaatcattcgtggataggttggttta
gi|5 : tttgaaccagaaaaaaagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagatatcataaaattggggccataaaattggtctacatgtagacaatgtaaagttctatatgacatgtataagctttaacggatgattgaaaagttgttacatgcttctattaaataactgtaagaaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccattctctctctgtttactggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAT----ACCTCGTCATTG------------ATG--TT-TCC---GAAG----TC-AGTCCCTGTCA
gi|5 : GTCAATATCATTTTTCCATGCTGA-ATATATTAGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGAATCACCACAGAGAACAGTATTGGTGTTTAGACATCAGTTGGTCCAGTGTGACAGTTCCATTTCCCAGTTAAAA-ATGAAATAGAATAT--A------TTACGTTGTAATACTATTTCTTGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGAACATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGGTATAATAAAATTTGGGCCATAAAATTGGTCTACATATAGACAATGTAACTTTCTTTATGACATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAA-----TGC-GGTGAAAC---------CACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAA---C-TCTCTCTCTGTTT-ACCGGataactgatatgccttttactcttgtcaatatcatttttccatgctgaatatattaggaacaggtcagttctgtacagcatacagatatgtcagagcactgaatcaccacagagaacagtattggtgtttagacatcagttggtccagtgtgacagttccatttcccagttaaaaatgaaatagaatatattacgttgtaatactatttcttgttataaaatgttgcatctttcaatactagatttactttcctagatacaaacttttgaaccagaaaataagaacatgtacatatataattgcaacacacaaaaaggttggtacacagaggtataataaaatttgggccataaaattggtctacatatagacaatgtaactttctttatgacatgtataagctttaacggatgattgaacagttgttacatgcttctattaatgcggtgaaaccacccggacgaaattgtattggtacgaaacctccaacaactctctctctgtttaccgg
gi|6 : aatacctcgtcattgatgtttccgaagtcagtccctgtcaataactgatatgccttttactcttTCCACAAGCTCATAATCATCCACAATAACATTAAACAGTCATCATTTATTCTGTTTCCTTCGTCCAGTCTTATGGAAATAAAGTCATTGCAATGTC---AATACCCTTT-CCCTCAACGTATTAAAGTCTGGGTTTAGTAGCTG--CTCTCT--CGATA-GACTGTCAGTTGCGATGA-TATAA-CTTGT----------TTTTA-----------------------T-ACGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGGCAATTATATGGTGATG--------CACTATACCAGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCAGG----ATCT-GTCCATGATATTCTTCACACAAACTCAGGATCT-GTCCATG------------ATA--TTCTTCACAGAAAATACCT-AGTCACTG--ATGTTTCCAA
gi|6 : GTCAATATCATTTTTCAAAGCTGA-ATATATTGAGAACAGGTTAGTTCTGTACAGCATACAGAagtcagtcactgtcaataactgacatggcttttactattgtcaatatcatttttcaaagctgaatatattgagaacaggttagttctgtacagcatacaga
gi|7 : tccacaagctcataatcatccacaataacattaaacagtcatcatttattctgtttccttcgtccagtcttatggaaataaagtcattgcaatgtcaataccctttccctcaacgtattaaagtctgggtttagtagctgctctctcgatagactgtcagttgcgatgatataacttgtttttatacgtgtccaaagttttgaactatagtgcgaggatggcaattatatggtgatgcactataccagaagaaaaagcaaacgagtgtatgtccctccctgcaggctcaggatctgtccatgatattcttcacacaaactcaggatctgtccatgatattcttcacagaaaatacctagtcactgatgtttccaaagtcagtcactgtcaataactgacatggcttttactattTAATTTATTAAGTGACAAAAA---TACTAAGACGCTAGACACATAATAAATTCAATAATTAACAAGCATTTGTGTTACAAGATCCTTCTATGTAGTACAGAAACAG--T-TTTT-TTTTTGGTCACAAGTAAAAAGATAATGACAAACGGTCACTGAATGATCAGAAAAGCTCTTGAGTCTGTGGCCTTCATGAGATCAAAATTATCCACAATAACATTTAACATCCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCGATGTC---AACAAACTTTCCCCTTAACGTATTAATGTCTGGGTTTAGTGGCTG--CTCTCT--CTACA-GACTGTCAGTAGCGATGA-TATAG-CCTGT----------TTTTA-----------------------T-CTGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGACAATTATATAGTGATG--------CACTTAAC
gi|7 : CTCGGG----ATCT-GCCCATGATATTCTTCATACAAAtaactcgggatctgcccatgatattcttcatacaaa
gi|8 : taatttattaagtgacaaaaatactaagacgctagacacataataaattcaataattaacaagcatttgtgttacaagatccttctatgtagtacagaaacagttttttttttggtcacaagtaaaaagataatgacaaacggtcactgaatgatcagaaaagctcttgagtctgtggccttcatgagatcaaaattatccacaataacatttaacatccatcatttattccgtttccttcgttcagtcttatggaaataaaatcattgcgatgtcaacaaactttccccttaacgtattaatgtctgggtttagtggctgctctctctacagactgtcagtagcgatgatatagcctgtttttatctgtgtccaaagttttgaactatagtgcgaggatgacaattatatagtgatgcacttaactaaGGATGTGTTGATATTCTTTT-GCACATGCGCGAATGTATTATTATCTGTTACGTCATACAG-GCAATTTACATATTTTATTTATAATTGACGGATGTGGAAGCCCGTTACCGGTATTCTGAAAGCACGTACCAATTATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCAGAAAGGTATA------TTTTGAAAAGAAGTCATTGTTACGTTACATAATAAAGTAATGT-------GTGG--CATTAGTTTGTAAATCATTCGTTGATAGGTTGCTTTA
gi|9 : ACTTTACTGGAAGATAAATAAAACGAGTA-----TATGTTCCTCCCTGCAGTATCAGGGTATATCT-GTCTATGATATTCTTCACAC-AAAT----AACAAGTGACTA------------ATG--TT-TCG---GCAG----TC-AGTCATTGTCAAT----CA--CTGATATGTATT
gi|9 : GTCCATATCATTTTTCCAAGTTGA-ATTTATTGGGAACAGGTAAGTTCttactcttgtccatatcatttttccaagttgaatttattgggaacaggtaagttc
blockSeqs : AAA T T A TT GT . T A A A . C G T A CT AC C A T T T ACATATGGAC ACCTGTACATACAGACACTCTCT C G C AATTAAGT TAATT GTAT A A CAGGAT A TCAATAACTGAC CC C CACAGAAAATAC T G T A T A C A ACATGTA TT GC T A G A G A G A GTTNNNNNN GTCT . NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN A A GTGCAAAACACAATATT A ATTTAT A TAT AA A T T AT A T TATATG GT A A CAT
blockSeqs : . T A A G G . A A A G . . G T A . . A . . T . . ACATATGGACCCCT . T T . . . . C AC C . . . CGAAG . C T T . A C A TAA TT . G A G A A A C A GNNNNNNNN TT . A . . T C T TCA . A T . . . A . A A . .
blockSeqs : . A A . . T . C . . A . . A T T . . T . . T . . . . T C . . . . C AA A . . . GGCAG . A T A . A C T A CT . T C T T A . . . . CT . A T A T . . . . . . C . A A . .
blockSeqs : . . A T T . . A . . T . . . . T C . . . T . . . . . AC . C T A . T A T . . C . . . . . . G . A G . .
blockSeqs : . . . . T . . G . . T . . . . A T . A T A . C A . A . . .
blockSeqs : . . . . T . . A . . . . A C . T . .
blockSeqs : . . A . . . . A A . A
blockSeqs : . A . G .
blockSeqs : A .
blockSeqCons : *** TT A*
originalCons : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-ACCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
finalCons : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-ACCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
Alignments
lowQualScore : 111 11 1 111 2222222222 77777777777777777777777 11111111 22222 1111 222222 444444444444 11 222222222222 222222222 11 333333333 222222 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888 55555555555555555555 222222 11111 11 1 1 11 111111 111
lowQualScore : 777 1 1 3 88 55 0 1 3 0 3 1 111 0 6 6 5 1 77 77 1 5 4 1 4 1111111111 55555555555555555555555 5 1 1 0 0 44444444 55555 0 7777 8 1 0 0 0 111111 5 111111111111 11 8 444444444444 8 1 1 1 6 3 2 0 1 0 555555555 44 0 11 5 1 5 4 1 7 2 3 666666666 888888 0 2222222222222222222222222222222222222222222222222222222222222222222222222222222222 7 7 99999999999999999999 00 1 777777 1 88888 33 3 0 0 0 0 11 8 1 999999 88 1 6 111
lowQualScore : ... . . . .. .. . . . . . . ... . . . . . .. .. . . . . . .......... ....................... . . . . . ........ ..... . .... . . . . . ...... . ............ .. . ............ . . . . . . . . . . ......... .. . .. . . . . . . . . ......... ...... . .................................................................................. . . .................... .. . ...... . ..... .. . . . . . .. . . ...... .. . . ...
lowQualScore : 555 0 2 2 88 88 0 2 2 2 2 2 777 7 7 3 0 9 99 99 0 0 4 0 4 9999999999 66666666666666666666666 0 0 0 6 9 55555555 00000 2 0000 0 4 8 8 8 000000 6 000000000000 00 0 000000000000 0 0 4 7 7 2 5 8 4 8 000000000 66 8 00 6 0 0 0 4 0 5 2 222222222 555555 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000 3 3 22222222222222222222 55 0 000000 0 55555 88 2 6 8 0 8 00 0 0 222222 33 7 7 777
consensus : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-ACCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
Reference ( family-1484 ) : TAATTTATTAATTGACAAAAA---TACTANGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTGTTACAAGATCCTTTTATGTAGTACAGAAACAG-GTGTTTT-TTTTTGGTTACAAGTAAAAAGATAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCAATGTC---AACGCCCTTT-CCCTCGACGTATTAAAGTCTGGGTTTAGCGGCTG--CTCTCT--CNATA-GACTGTCAGTAGCGATGA-TNTAA-CCTGT----------TTTTA-----------------------T-ACGTGTCCNAAGTTTTGAACTATAGTGCGAGGATGNCAATTATATGGTGATG--------CACTTTACCGGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCGGG----ATCT-GTCCATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---GAAG----TC-AGTCANTGTCATTTTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATGAAATAGAATAT--A------ATACGATGTCATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACNAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGGCATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAAATAACTGTAAGTAAAGCGTTNNNNNNCACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAAGTCT-TCTCTCTCTGTTT-ACCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAGATATCGCACCGGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAG-T-CAAA-CAC-A-TA-T-CGCTCTGCATTTNGATAGTTAACAATATATCTATA-----CGCTCTTGTTGAATTTTAAAATGTNACGTGCATC--T--AA--GTCATAAATTGCGTATAGAAAATACTTACACGGGACTTGACAGTTTCTGGAAGTGTTGATATTCTTTT-GCGCATGCGCGAATGTAATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGGGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCNGAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|1 : TAATTTATTAATTGACAAAAA---TACAAAAATGCTCGACACATAATAAATTCGATGATTAACAAGCATTTGTGTTACAAGATCCTTTCATGTAGTACAGAAACAA-GTGTTTTATTTTTGGTTACAAGTAAAGAGATAATGACAAATGGTTACTGAGTAATCAGAAAAGCTCTTGAGTCTGTGGTCTCCACAAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCTGTTTCCTTTGTTCAGCCTTTTGGAAATAAATTCATTGCAATGTCGTTAATACCCTTT-CCCTCAGCGTATTGAAGTCTGGGTTTAGTGACTG--CTCTCT--CGATA-GACTGTCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-ATGTGTCCAAAGTTTTGAACTTTAGTGCGAGGATGACAATTATATGGTGATG--------CACTTTACTAGAAGAAAAAGCAAACGAATG-----TATGTCCTTCCCTGCAGGCTCAGG----ATCT-GTCTATGATATTCTTCACACAAAAT----ACCTAGTCACTG------------ATG--TT-TCC---AAAG----TC-AGTCATTGTCATTGTTCCAAGCTGA-ATATATTGGGAACAGGTCAGTTCTGTACAGCATACAGAT--------GCA--GCATCACCACAGAGAACAGTATTGGTATTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATATAAAATTGAATAGAATAT--A------ATACGATGTCATA-TATTTCTAGTTATAATATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGTTAAAATAAAATTGGGTCCATAAAATTAGTTTACATGTAGACAATGTAAAGTTCTGTATGGCATGTATAACCTTTAACGGATGGTTGAACAGTTGTTACATGCGTCTATTAAGTAACTGTAAGTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAGTCTGTCTCTCTCTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAATATACGATTAAATACGCCAAAGGCACTTGCAGTTAAATATCGCACCGACTTCGAACGCAAACTAG---AAAAAAAAGACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTCGTATGACAACAGTT-CAAATCACAA-TATT-CGCTCTGCATTTTGATAGTTAACAATATATCTATA-----TGCTCTTGTTGAATTTCAAAATGTTACGTGCATC--T--AA--GTCATAAATTACGTTTAGAAAATACTTACACGGGACTTCACAGTTTCTGGAAGTGTTGATATTATTTT-GCACATGCGCGAATGTTATATC--CTGTTACGTCATACAG-ACAATTTACATATTTTATTTATGAATGACGGATGGGGAAACACGTTACCAGTATTCTAAAAACATGTACCAAAAATTCAGTAAAATATCAATATTTTCTATTTACCAAAGCCGCCGAAAGATTTA------TATTGAACAGAAATATTC---ATATTGCATATTTAAGTAAAGT-TAA---ATGGGATAGTAGTTTGTTAATCATTCGTGGATAGGTTGCTTTAA
gi|10 : AGTTTGAGAT-AGCGACAG--CTCTCT--CCCTAAGACTATCAGTAGCGATGATTTTAA-CCTCT----------TTTTT-----------------------T-A
gi|10 : ttTCCGAAGTCTTAAACTACAGTGCGAGTATGCCAATTACATGATGATGAATTAAGTGACTTTACCGGAGGAAGAAGatcttttaaatccgcacatatggacccgcactcacggatccgaacttccgaagtcttaaactacagtgcgagtatgccaattacatgatgatgaattaagtgactttaccggaggaagaagaaga
gi|11 : ttagtttgagatagcgacagctctctccctaagactatcagtagcgatgattttaacctctttttttaatcttttaaatccgcacatatggacccgcactcacggatccgaactGCGTGAATGTAGTATC--ATGTTACGTCATACAGAAAAATTAACATTTTTTATTCATAAATGACTGATGGGGAAA-----TATCAATATaaga
gi|11 : AAATATCAATATGTTTTATTAACCAAAACCGTTGAAAGGTATATATATGTATTAAATGGAAATCATCA-TAT-----ATATCAAAATAATGTATAGCATGTGGGAAATTAGTgttttattaaccaaaaccgttgaaaggtatatatatgtattaaatggaaatcatcatatatatcaaaataatgtatagcatgtgggaaattagt
gi|12 : gcgtgaatgtagtatcatgttacgtcatacagaaaaattaacattttttattcataaatgactgatggggTGTC---AACGGCCCCT-CCATTGACGCATTCGAGTCTAGGAT-AGCGG--------------AA-------GTCAGTAACGATGA-TTTTATCCTGT----------TTTTAACCTGTACATACAGACACTCTCTC-ACGTGTCTTAAGTTTTAACCTACAGTGTAAGGATTTCACTTATATTGTGGTG--------CACTTCA
gi|13 : aggccgcctAATTTATTAATTGAAAAAAAAAATAATATGATGCTCGACACTTAATAAATTCGATTACTAACAAGCACTTGTGTTTCAAGATCCTTTTATGAAGTACAG-AACAGTTTGTTTT-TTTTTGGTTACAAATAAAAAGATAATGAC-AACGGTAACCGTGTAAT
gi|14 : AAA-CAC-A-TA-T-CGCTTTGCAGTTAGATAGTTAACAAAATATCTATA-----CACTCTTATTGAATTTTAAAATGTAAAATGCATCTAT--AA--GTC---AATTGCATATAGAAAA----TACATGGGACTTGACAGTTTCTGAAAGTAT
gi|15 : tTTCCATT-----GATTATAACTGAAATAGAATAT--ACATGTAGTACAATGCCATATTTTTTCCAATTATAAAATGCTGCATCGTTCACTAC-GGATTGCTAATTTCCTAGATACAAACATTTTAACAAGAAAAGAA----ATGTACACATATaataattatatt
gi|16 : aGTAAAATATCAATAAATTTTAATTACCAAAGCCACAGAAAAGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTACTTTGTTAATCATTTGTGGATAGGATGCTTTA
gi|17 : TA-GACTGTCAGTAGCGATGA-TTTAT-CCGGT----------TTTTAACATATGGACCCCT---------C-ACGTGTCCTAAGTTTTAGACTATAGTGCAAGGATACCACT---------------------ACTTTACCGGAAGAA
gi|18 : -TTTAA-CCTGTACATATGGACTCTCA-----------------------TCGCGTGTCCTCAGTTTTAATCTATAGTGCGAGGATACC------ATGGTGATG--------CACTTTGCCGGAAGAAggatacat
gi|19 : tagttTGTC---AACGCCCCCT-TCCTCGACGCATTGAAGTCT-GGTTTAGCGACAG--CTCTCTACTTATT-GACTGTCCGTAGCGATGC-TTTAA-CCTGggat
gi|2 : atCATACAGATATGTCAGAGCACTGCATCACCACAGAGAACAGTATTGGTGTTTAGATATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGATAAAAAATTAAATAGAATAT--A------ATACGATGTCATAT-ATTTCCAGTTATAAAATGTTGTATCTTTCAATACTAGATT--CACTTGCCTAGATATAAAGTTTTGAACAAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATATTAAAATTGGGGCCATAAAATCGGTCTACATGTAGACAATGTAAA-------------------AGCTTAAACGGATGATTGAACAGTTGTTAAATGCTTCTATTAAATAAGTGTAAGTAAAGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACAAGTCT--------CTGTTT-CCCGGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACGCCAAAGGCACTTGCAATTAGATATTACACCGGCTTCGAACGCAAACAAGAAAAAAAA---GACGTACAGTAGACGTCCGTTTCTTTACTTCAGTTCTAGTATGACAACA------------------------CTGCATTTTGATACTTTACAATATTTATATA-----TGCTTTTGTTGAATTTTAAAATGTTACGTGCATC--T--AAAAGTCATAAATTGCGTATAGAAAATACTTACACAGGACTCG-CAGTTTCTGGAAGCATTGATATTCTTTT-GCGCATGCGCAAATGCAA-ATC--CTGTTACGTCATACAT-ACAATTTACATATTTTATTTATAAATGACGGATGGAGAAACCCGTTACCAGTATTCTGAAAACACGTACCAATATTTCAGTAAAATATTAATATA--TTATTTACCAAAGCCGCCGAAAGATTTA------TATCGAACAGAAACCATCA-TATATTGCATACTTAAGTAAAGT-TAA---ATGGGATATTAACTTGTTAATCATTCGTGAATAGGTAGCTTTAA
gi|20 : AGTTTTAAACTATTGTAAGATGATGTCAATTATATGGTGATG--------CACTTCACCGGAAGAAGAa
gi|21 : AGTGAGAGGATGCCACTAACATGGTGATG--------CACTTTACCGGAAGAAtaagaa
gi|22 : AAAA-ACTAACACGGGACTTGACATTTTTTGGAAGTGTTGATggaa
gi|3 : gtTAATTAATTAATTGACAAAAA---TACTATGACGCTCGACACATAATAAATTCGATAATTAACAAGCACTTGTTTAACAAGATCCTTTTGTGTAGTACAGAAACAG-GTG-----------GTAACAAGTAAAAAGTTAATGACAAACGGTCACTGAGTGATCAGAAAAGCTCTTGAGTCTGTGGCCTCCACGAGCTCAAAATCATCCACAATAACATTTAACAGTCATCATTTATTCCATTTCCTTTGTTCAGTCTTATGG-AATAAAATCATTGCAATGTC---AACACCCTTT-CCCTC-ACGTATTAAAGTCTGGTTTTAGTGGCTGCTCTCTCT--CAATA-GACTGCCAGTAGCGATGA-TATAA-CCTGT----------TTTTA-----------------------T-TTGTGTCCAAAGTTTTGAGCTATCATGCGAGGATGACAATTATATGGTGATG--------AACTTTACTAGAAGAAAAAGCAAACAAGTATAATTTATGTCCCTCCCTGCAGACTTGGG----ATCTAGTCACTGATGT--TTC---CAAAGT-------CAGTCACTGTCAATAACTGACATGCCTT-TT------AC----TCTTGTCAGTATCATTTTTCCAAGCTGA-ATATATTGGGAACATGTCAGTTCTGTACAGTATACAGATATGTCAGAGCACTGCATCACCACAGAGAATAGTATTGGTGTTTAGACATCACTTGGTCCAGTGTGACAGTTCCATTTCCTAGTTAAAAAATGAAATAGAATATTAA------ATACGATTATATATTATTTCCAGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTT--CTAGATACAAACCTTTGAACCAGAAAATAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATAATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTGAAGTTCTATATGGCACGTATAAGCTTTAACGGATGtta
gi|4 : TTTGAACCAGAAAAAAAGTGCATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGATATCATAAAATTGGGGCCATAAAATTGGTCTACATGTAGACAATGTAAAGTTCTATATGACATGTATAAGCTTTAACGGATGATTGAAAAGTTGTTACATGCTTCTATTAAATAACTGTAAGAAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCA---T-TCTCTCTCTGTTT-ACTGGt
gi|4 : GGCTTCGAACGCAAACAAGAAAAAAAAAAAGACGTACAGATGACGATCGTTTCTTTACTTTATTTCTCGTATGACAACAG-TGCAAAACAC-AATA-TTCATTCTGCATTTAGATAGTTAACAATATATCTATAATTTATGCTCTTGTTGAATTTTAAAATGTAACATGCATC--TCAAA--GTCATAAATTGCATATAGAAAATACTTACACGGGACTTTACAGTTTCTGGAAGTGTTGGTATTCTTTTTGCGCATATGCGAATGTAATATC--CTTTTACGTCATACAG-ACAATTTACATATTTTATTTATAAATGACGGATGGG-AAACCCGTTACCAGTATTCTGAAAACATGAACAAATAATTCAGTAAAATATCAATATATTTTATTTACCAAAGCTGCGAAAAGGTTTA------TATTGAACAGAAATCATCA-TATATTGCATATTTAAGTAAAGT-TAA---ATGGGATATTAGTTTGTTAATCATTCGTGGATAGGTTGGTTTAcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcttcgaacgcaaacaagaaaaaaaaaaagacgtacagatgacgatcgtttctttactttatttctcgtatgacaacagtgcaaaacacaatattcattctgcatttagatagttaacaatatatctataatttatgctcttgttgaattttaaaatgtaacatgcatctcaaagtcataaattgcatatagaaaatacttacacgggactttacagtttctggaagtgttggtattctttttgcgcatatgcgaatgtaatatccttttacgtcatacagacaatttacatattttatttataaatgacggatgggaaacccgttaccagtattctgaaaacatgaacaaataattcagtaaaatatcaatatattttatttaccaaagctgcgaaaaggtttatattgaacagaaatcatcatatattgcatatttaagtaaagttaaatgggatattagtttgttaatcattcgtggataggttggttta
gi|5 : tttgaaccagaaaaaaagtgcatgtacatatataattgcaacacacaaaaaggttggtacacagagatatcataaaattggggccataaaattggtctacatgtagacaatgtaaagttctatatgacatgtataagctttaacggatgattgaaaagttgttacatgcttctattaaataactgtaagaaaagtgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncaaccattctctctctgtttactggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAT----ACCTCGTCATTG------------ATG--TT-TCC---GAAG----TC-AGTCCCTGTCA
gi|5 : GTCAATATCATTTTTCCATGCTGA-ATATATTAGGAACAGGTCAGTTCTGTACAGCATACAGATATGTCAGAGCACTGAATCACCACAGAGAACAGTATTGGTGTTTAGACATCAGTTGGTCCAGTGTGACAGTTCCATTTCCCAGTTAAAA-ATGAAATAGAATAT--A------TTACGTTGTAATACTATTTCTTGTTATAAAATGTTGCATCTTTCAATACTAGATT--TACTTTCCTAGATACAAACTTTTGAACCAGAAAATAAGAACATGTACATATATAATTGCAACACACAAAAAGGTTGGTACACAGAGGTATAATAAAATTTGGGCCATAAAATTGGTCTACATATAGACAATGTAACTTTCTTTATGACATGTATAAGCTTTAACGGATGATTGAACAGTTGTTACATGCTTCTATTAA-----TGC-GGTGAAAC---------CACCCGGACGAAATTGTATTGGTACGAAACCTCCAACAA---C-TCTCTCTCTGTTT-ACCGGataactgatatgccttttactcttgtcaatatcatttttccatgctgaatatattaggaacaggtcagttctgtacagcatacagatatgtcagagcactgaatcaccacagagaacagtattggtgtttagacatcagttggtccagtgtgacagttccatttcccagttaaaaatgaaatagaatatattacgttgtaatactatttcttgttataaaatgttgcatctttcaatactagatttactttcctagatacaaacttttgaaccagaaaataagaacatgtacatatataattgcaacacacaaaaaggttggtacacagaggtataataaaatttgggccataaaattggtctacatatagacaatgtaactttctttatgacatgtataagctttaacggatgattgaacagttgttacatgcttctattaatgcggtgaaaccacccggacgaaattgtattggtacgaaacctccaacaactctctctctgtttaccgg
gi|6 : aatacctcgtcattgatgtttccgaagtcagtccctgtcaataactgatatgccttttactcttTCCACAAGCTCATAATCATCCACAATAACATTAAACAGTCATCATTTATTCTGTTTCCTTCGTCCAGTCTTATGGAAATAAAGTCATTGCAATGTC---AATACCCTTT-CCCTCAACGTATTAAAGTCTGGGTTTAGTAGCTG--CTCTCT--CGATA-GACTGTCAGTTGCGATGA-TATAA-CTTGT----------TTTTA-----------------------T-ACGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGGCAATTATATGGTGATG--------CACTATACCAGAAGAAAAAGCAAACGAGTG-----TATGTCCCTCCCTGCAGGCTCAGG----ATCT-GTCCATGATATTCTTCACACAAACTCAGGATCT-GTCCATG------------ATA--TTCTTCACAGAAAATACCT-AGTCACTG--ATGTTTCCAA
gi|6 : GTCAATATCATTTTTCAAAGCTGA-ATATATTGAGAACAGGTTAGTTCTGTACAGCATACAGAagtcagtcactgtcaataactgacatggcttttactattgtcaatatcatttttcaaagctgaatatattgagaacaggttagttctgtacagcatacaga
gi|7 : tccacaagctcataatcatccacaataacattaaacagtcatcatttattctgtttccttcgtccagtcttatggaaataaagtcattgcaatgtcaataccctttccctcaacgtattaaagtctgggtttagtagctgctctctcgatagactgtcagttgcgatgatataacttgtttttatacgtgtccaaagttttgaactatagtgcgaggatggcaattatatggtgatgcactataccagaagaaaaagcaaacgagtgtatgtccctccctgcaggctcaggatctgtccatgatattcttcacacaaactcaggatctgtccatgatattcttcacagaaaatacctagtcactgatgtttccaaagtcagtcactgtcaataactgacatggcttttactattTAATTTATTAAGTGACAAAAA---TACTAAGACGCTAGACACATAATAAATTCAATAATTAACAAGCATTTGTGTTACAAGATCCTTCTATGTAGTACAGAAACAG--T-TTTT-TTTTTGGTCACAAGTAAAAAGATAATGACAAACGGTCACTGAATGATCAGAAAAGCTCTTGAGTCTGTGGCCTTCATGAGATCAAAATTATCCACAATAACATTTAACATCCATCATTTATTCCGTTTCCTTCGTTCAGTCTTATGGAAATAAAATCATTGCGATGTC---AACAAACTTTCCCCTTAACGTATTAATGTCTGGGTTTAGTGGCTG--CTCTCT--CTACA-GACTGTCAGTAGCGATGA-TATAG-CCTGT----------TTTTA-----------------------T-CTGTGTCCAAAGTTTTGAACTATAGTGCGAGGATGACAATTATATAGTGATG--------CACTTAAC
gi|7 : CTCGGG----ATCT-GCCCATGATATTCTTCATACAAAtaactcgggatctgcccatgatattcttcatacaaa
gi|8 : taatttattaagtgacaaaaatactaagacgctagacacataataaattcaataattaacaagcatttgtgttacaagatccttctatgtagtacagaaacagttttttttttggtcacaagtaaaaagataatgacaaacggtcactgaatgatcagaaaagctcttgagtctgtggccttcatgagatcaaaattatccacaataacatttaacatccatcatttattccgtttccttcgttcagtcttatggaaataaaatcattgcgatgtcaacaaactttccccttaacgtattaatgtctgggtttagtggctgctctctctacagactgtcagtagcgatgatatagcctgtttttatctgtgtccaaagttttgaactatagtgcgaggatgacaattatatagtgatgcacttaactaaGGATGTGTTGATATTCTTTT-GCACATGCGCGAATGTATTATTATCTGTTACGTCATACAG-GCAATTTACATATTTTATTTATAATTGACGGATGTGGAAGCCCGTTACCGGTATTCTGAAAGCACGTACCAATTATTCAGTAAAATATCAATATATTTTATTTACCAAAGCCGCAGAAAGGTATA------TTTTGAAAAGAAGTCATTGTTACGTTACATAATAAAGTAATGT-------GTGG--CATTAGTTTGTAAATCATTCGTTGATAGGTTGCTTTA
gi|9 : ACTTTACTGGAAGATAAATAAAACGAGTA-----TATGTTCCTCCCTGCAGTATCAGGGTATATCT-GTCTATGATATTCTTCACAC-AAAT----AACAAGTGACTA------------ATG--TT-TCG---GCAG----TC-AGTCATTGTCAAT----CA--CTGATATGTATT
gi|9 : GTCCATATCATTTTTCCAAGTTGA-ATTTATTGGGAACAGGTAAGTTCttactcttgtccatatcatttttccaagttgaatttattgggaacaggtaagttc