lowQualScore : 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11111111111111111111111111111111111111111111111111111111
lowQualScore : 33333333333333333333333 111 111 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 111111111 22 77777777777777777777777777777777 11 555555 111 1111111111 555555555555555555555555555555555555555555555555555 11 22222222 1 4 11111111111111111111111111111111111111111111111111111111 222222222 111111111 1111 11111 11 111111 11
lowQualScore : 00000000000000000000000 000 1 1 000 2 5 5 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3 55 777777777 1 44 3 555 6 9 1 1 1 1 1 2 6 2 0 5 9999 3 22222222222222222222222222222222 999 3 3 3 3 33 3 4 6666 555 44 000000 222 8 55 5 3 777 8 2 7777777777 777 55 4 222222222222222222222222222222222222222222222222222 4 3 666 777 55 4 11 00000000 1 0 2 55 88888888888888888888888888888888888888888888888888888888 4 333333333 111111111 7 4 0 9 2 7777 9999 0 3 00000 7777 2 2 00 111111 55 4 1 1 1 55 2 1
lowQualScore : ....................... ... . . ... . . . ................................................................................................................................................................................................................................................................................................................................................................... . .. ......... . .. . ... . . . . . . . . . . . . .... . ................................ ... . . . . .. . . .... ... .. ...... ... . .. . . ... . . .......... ... .. . ................................................... . . ... ... .. . .. ........ . . . .. ........................................................ . ......... ......... . . . . . .... .... . . ..... .... . . .. ...... .. . . . . .. . .
lowQualScore : 00000000000000000000000 999 9 9 444 1 6 1 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 00 555555555 9 44 8 222 0 2 7 7 7 7 7 2 6 4 2 2 1111 1 11111111111111111111111111111111 888 5 1 1 1 55 1 8 5555 222 66 888888 555 2 00 4 3 000 2 6 5555555555 000 55 0 666666666666666666666666666666666666666666666666666 0 2 333 000 55 0 55 22222222 4 0 5 55 77777777777777777777777777777777777777777777777777777777 0 000000000 000000000 6 0 5 6 9 7777 4444 5 6 88888 3333 5 5 33 999999 99 8 9 9 9 00 4 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGAAGTCGTTA-TATNCGTCGA-TNT-CTAGTCTTGATCATNTGCGACGCTT-GCTT-TT-C-TAAAAGACAAA-CGTCTTGACA-AGTT-----T-G-C--AGAA--GA----AA-------------A---------T-----AGAAGTNA-GATCTGATTGGCTG-----AA----AC--A----C--ACCT-C-----T--GCA------ATGG-TAT--TATA-------T-------AA----AA---TTAT----AAAAT-----AT-TTTAT-TCGGACGGAAGTC--AT-------------TGCA------------G--------------ATN---TG------------T--------GTC--ATA--TA---AA------A-A-CA--AT----TAATA----A-GCA-A-N----A--A------ATAT-AG--AAAT------AA-ACATCCAAACGATAGTC---AGTCTTGATCATNTGCGACGCTT-GC-T-TTT-CTAAAAG-ACAAACGTCTT-GACAA-GTTCGGCC-G-AGAAT-AAA----A-------TTAA--TTATTT-AGCG-ANAATCGA-ATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCG--GACT-A-C-TC---GGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TC--T-ATA--TT----AT-----T----TNTA-T--ATTAN-T--A---A----T----T-TTCTAT--GACA---A--A-GAT-CTTGTACAAGATAACTGCCATGAC-TTCCGTCCG--AATAAATATT--T--T--AN------A-----TT----TNA---TT---AT-T----ACA-T---------AACCGT-----TG--CAGAGG-TGTGTTTGTTTCA----GCCAATCAGATCTTACTTCC-AGATCC---AAACG---TTTC-TT-CT--GCAN----AACTTGTCAAGA-CGTTTGTCTTTTAG-AA-AA-G-CAAGCGTCGCATATGATCAAGACT
Reference ( gi|1 ) : TTGAAATGAAAGCGTCTGGATGGGGGGAAAAACAAAATCGTTA-TATACATTGA-TAT-TTAGTCTTGATCATCTTCGACGCTT-GCTT-TT-T-TAAAAGACAAA-CATCTTAACATAGTT-----T-G-C--AGAA--AA----AA-------------A---------T-----AAAAGTTA-GATTTGATTGGCCG-----AA----AC--A----C--ACCT-C-----T--G--------ATG------------------T-------AA----AG---TTGT----GAATT-----AT-TTTAT-TCTGACATAAGTC--AT-------------TGCA------------A--------------ATA---TG------------T--------GTC--ATG--TA---AA------A-A-CA--AT----TAACA----A-GCA-A-A----A--A------ATAT-AG--AAAT------AT-ATATTGAAACGATAGTC---AGCCTTGATCATTTGCGACGCTT-GC-T-TTT-CTAAAAG-ACAAACGTCTT-GACGA-GTTCGACC-G-AGAAT-AAA----A-------TTAAAATAGTTT-AGCG-ATAATCGG-ATAACG-T-TT-T--G-ACTGGT----TGA--TTCAAACAATCG--GAC--A-T-TC---GGAAATTTCCATAG--TATTTCAGAAAAG--TATCGGTTGGATGT----------TTATT---TC--T-ATA--TC----AT-----T----TATA-T--ATTAG-T--A---A----T----T-TTCTAT--GACA---A--A-GAT-TTTGTAAAAGGTAACTACCATGACATTCCGTCCG--A-----------T--T--AC------A-----TT----TAA---TT---AT-T----ACA-T---------AACCAT-----TG--CAGAAG-TGTGTTTGTGTTA----GCCAAACATATCTTACTTCC-AGATTC---AAACG---TTTC-TT-CT--GCAC----AACTTGTCAAGA-GGTTTATCTTTTAG-AA-AA-G-TAAGTGTCGCATATGATCAAGACT
gi|6 : AAACGAA--CTTTG-TATAAAACAA-CAT-T-AGTCTTGATCATATGCGGCGCTT-GCTT-TT-G-TAAAAAACAAA-CGTTTTGACA-GGTT-----TGG-C--CG-----A----AA-------------A---------T-----AAAAATCA-T-TTTTATTAGC
gi|5 : gtgtacattgtactttacaatacgacaaagttACAAAG--GTAA-TATTTGTTTA-TCTGTCAGTCTTGATCCTATGCGACGCTT-GCTT-TT-C-TAAACGACAAA-CGTCTTGACA-AGTTG----T-G-C--AGAA--GA----AACGTTTGG------A---------TTT---GGAAGAAA-GATCTGATTGGCTG-----AA----AC--AAACAC--ACCT-T-----T--GCAATGTTTATG------------------TTATAAT-AA----AA---TCTT----AAAAT-----AA-AT-AT-TCGGACGGAAGTC--AT-------------GGCA------------G--------------TTA---TA------------TTGCACAAGATCTAATAAATATCTAA------A-A-TA--GC----TAATA----ATATA-A-A----A--ATATTCAATAT-AG--AAAT------AA-ACATCCAAACGATACTC---gataatcgaattatgtttttgattggtttattcaaacaagactaccttggacatttccttagttttccaaaaaaatatcgttttgatgtttatttctatattcatgattttcatattatttgatattttctatgacaaagacaactgccatgatttccgtccgaacaaatattttttaattttattataacataaccattgcagtggtgtgtctgttttagccaatcagatctcacttccagatctacacgtttcttctgcacaacttgtcaaggcgtttgtattttagaaaagcaagcgtcgcctatgatcaagact
gi|4 : acagtttgatcatatgcgacgcttgcttttctaaaagacaaacgtcttgacaagttcggccgagaataaaagtcaattttatttagtgaatatcgtttttgattggtcgattcaaacaaccagactacctcggagatttccatagtatttcaaaaAATAGTTAGTGTTCATTAA-G----TAGTCTTGATCATTTGCGACGTTT-GCTT-TT-C-TAAAAGACAAA-CGTCTTGACA-AGTT-----CGG-CCGAGAAT-AA----AA-------------A---------T-----gatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|3 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtTCGTTC-TACA----GACTAC-CTAGTCTTGATCATTTGCGACGCTT-GTTT-TT-C-TAAAAGACAAA-CGACTTGACA-A--C-----T-G-C--AGAT--GA----AATGTTTGGATCTGGA---------T-----GAA----A-GATCTG-TTTTCTG-----AA----ACAAA----CAAACCT-C-----T--GCA------ATGC-----------------T-------TA----TG---TTATAATAAAATTTAAAAATATTTAT-TCGGACGGAAGTC--AT-------------GGCA------------G--------------TTATCTTGTACAAGATCGT-T--------GTC--A----TA---GA------A-A-CT--ATC---TAAT-----A-GTA-A-T----T--A------ATAT-AG--AAAT------AA-ACATCCAACCGATACTC---catttttatctagcgaaaatcgaataacgtttatgattgattgattcaaatcggactacctcggagatctccatagtgattcaaaagcgtagcgtttggatgtttatttctatattcattattgttatagtattagatatttttgtgacaaagatcttgcacaagaaaactgccatgactttcgtccgaataaatattcttaaattttattataatataaccatcgcagaggtgtgtttatttcagccaatcagatcttacttcgtttcttctgcagaacttgtcaaaacgtttgtcctttagaaaatcaagcgtcgcatattatcaagacta
gi|15 : ttGA-TTT-CTAGTCTTGGTCATTTGCAACGTTT-GCTT-TT-TCTAACAGAttttgaaataatatggaaatgtccgaggtagtccgattgtttattcaaccaatcaaaaacgttattcgatttttcactaaataaaactgattttattcttggccgaacttgtcgagacgtttgtcttttagaaaagcaagcgtcgcatatgatcaagactacagactacctgaaggtccatttctttacttgtttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|16 : A-TGT-CTAGTCTTTATTATCTTCGACGCTT-GTTT-TT-C-TCATAGACACA-CGTCTgcgggtttatttgtttatt
gi|12 : T-TTAGTCTTGATCATATGCGACACTT-ACTT-TT-C-TAAAAGA
gi|18 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcg-TTAGTCTTGATCATCTGC-ACATTC-ACTT-TT-C-TTAAAGATAGA-t
gi|3 : TAGTCTTGATCATATGCGACGCTT-GCTT-TT-C-TAAAAGACAAA-CGTCTCGACA-AGTT---------C--GGCC--AA----GA-------------A---------T-----AAAA-TCA-GTTTTATTTAG-TG-----AA----A
gi|4 : tttcgttctacagactacctagtcttgatcatttgcgacgcttgtttttctaaaagacaaacgacttgacaactgcagatgaaatgtttggatctggatgaaagatctgttttctgaaacaaacaaacctctgcaatgcttatgttataataaaatttaaaaatatttattcggacggaagtcatggcagttatcttgtacaagatcgttgtcatagaaactatctaatagtaattaatatagaaataaacatccaaccgatactcttttgaaataatatggaaatgtccgaggtagtccgattgtttattcaaccaatcaaaaacgttattcgattTAGTCTTGATAATATGCGACGCTT-GATT-TT-C-TAAAGGACAAA-CGTTTTGACA-AGTTC----T-G-C--AGAA--GA----AA-----------------------------CGAAGTAA-GATCTGATTGGCTGAAAT-AA----AC--A----C--ACCT-C-----TGCG--------ATGGTTATATTATAA------T-------AA----AA---TT-TAA--GAA-T-----A--TTTAT-TCGGACGAAAGTC--ATGGCAGTTTTCTTGTGCA------------AG-------------ATC---TT------------T--------GTC--A----CA---AA------A-A-TA--TC----TAATACTATA-ACA-ATA----ATGA------ATAT-AG--AAAT------AA-ACATCCAAACGCTAcagactacctgaaggtccatttctttacttgtttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|7 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaagtagtcttgatcatttgcgacgtttgcttttctaaaagacaaacgtcttgacaagttcggccgagaataaaaatcatttttatctagcgaaaatcgaataacgtttatgattgattgattcaaatcggactacctcggagatctccatagtgattcaaaagcgTAGTCTTGATCATGCGCGACACTT-GCTT-TT-C-AAAAAAACAAA-TGTTTCGACA-AGCT-----C-G-
gi|14 : TAATCTTGATGATACTCGGCGCTTAGCTT-TC-C-TGAAA-ACAAA-TGTCTTGACAgccgaggataaatctcatttttatttaacaaaaatcaaataacgttttgattggttgaatttcaaatcggacttccttggaggtttcaatagtatttcaaaagagtatcggttggatgtttatttctatattcattatttttatattattagatattttctatgacaaaaatcttgtacaagaaatcttccatcacttccgtccgaataaatatttttaaattttattattatattatagccatcacagaggtgtgtttgtttctgccattagatcttatttccaaatcaaagtgtttcttctgcacaacttgtcaagacgtttgtagtttagaaaagcaagcattgcatatgatcaagact
gi|17 : aatTAGTCTTGATAATTTGTGATACTT-GCTT-CTAC-TGAAACACAAA-taacggattatacaaattgaat
gi|5 : AGT-TTGATCATATGCGACGCTT-GCTT-TT-C-TAAAAGACAAA-CGTCTTGACA-AGTT-----CGG-C--CG-----A----GA-------------A---------T-----AAAAGTCA--ATTTTATTtg
gi|7 : acAGTCTTGATCATATGCAATGCTT-GCTT-TT-C-TAAACTACAAA-CGTCTTGACA-AGTTG----T-G-C--AGAA--GA----AACACTTTG------A---------TTT---GGAAATAA-GATCTAAT-GGCAG-----AA----AC--AAACAC--ACCT-CTG---T--G--------ATGGCTATAATATAATAA---T-------AA----AA---TTTA----AAAAT-----A--TTTAT-TCGGACGGAAGTG--ATGGAAGATTTCTTGTACA------------AG-------------ATT---TT------------T--------GTC--ATA--GA---AAATATCTA-A-TA--ATA---TAA-A----A-ATA-A-T----G--A------ATAT-AG--AAAT------AA-ACATCCAACCGATACTC---tagtgaatatcgtttttgattggtcgattcaaacaaccagactacctcggagatttccatagtatttcaaaagagtatcgtttggatgtttatttctatattgaatatttttatattattagctattttagatatttattagatcttgtgcaatataactgccatgacttccgtccgaatatttattttaagattttattataacataaacattgcaaaggtgtgtttgtttcagccaatcagatctttcttccaaatccaaacgtttcttctgcacaacttgtcaagacgtttgtcgtttagaaaagcaagcgtcgcataggatcaagactgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|6 : tagtcttgatcatgcgcgacacttgcttttcaaaaaaacaaatgtttcgacaagctcggccgaggataaatctcatttttatttaacaaaaatcaaataacgttttgattggttgaatttcaaatcggacttccttggaggtttcaatagtatttcaaaaAGTCTTGATCATAGGCGACGCTT-GCTT-TT-C-TAAAATACAAA-CGCCTTGACA-AGTTG----T-G-C--AGAA--GA----AACGTGT--------AGATC-----T-----GGAAGTGA-GATCTGATTGGCTA-----AAACAGAC--A----C--ACCA-C-----T--GCA------ATGGTTATGTTATAA------T-------AA----AA---TTAA----AAAAT-----A--TTTGT-TCGGACGGAAATC--AT-------------GGCA------------GTT------------GTC---TT------------T--------GTC--ATA--GA---AA------ATATCA--AA----TAATA----T-GAA-A-ATCATG--A------ATAT-AG--AAAT------AA-ACATCAAAACGATA
gi|13 : gtgtacattgtactttacaatacgacaaagttaaacgaactttgtataaaacaacattagtcttgatcatatgcggcgcttgcttttgtaaaaaacaaacgttttgacaggtttggccgaaaataaaaatcatttttattagcgataatcgaattatgtttttgattggtttattcaaacaagactaccttggacatttccttagttttccaaaaaaaAATCTTGATCATCTGCGATGCTT-AATT-CC-T-T-AAAGACAAA-TGTCTTGAAA-GGTTCCACCT-G-C--AAAATGAA----AA-------------A---------
gi|8 : GTCTTGATCATATGCGACGCTT-GTTT-TT------------------CTTGACAC-GTT-----G-GGC--AGAA--GA----AATGTTTGA------A---------TCT---AGAAGTAG-GATCTGATTGGCTG-----AA----ACAAA----CAAACCT-C-----T--GCA------ATGGTTATGCTATACATGTAAT-------AA----AA---TT-T----AAAAC-----AA-TTTAT-TCGGATAGAAGTC--AT-------------GGCA------------ATTATCTTGTACAAGATC---TG------------T--------GTC--ATA--GA---AATATGT-A-A-TA--ATA---TAA-A----A-CTA-A-C----A--C------ATAT-AT---AAT------AC-ACATCAAACCGATACTC---tcatggatta
gi|9 : ctagtcttgatcatatgcgacaaacgtctttaacgagttcgaccgagaataaaagtaacgtattttcaatgacaatctgataacgttttatgattgactgaatcaaacaatcggactacctcggaaatgtccttagtatttcaacaGTCTTGATTATATCAGAAGCTT-GCTT-TT-C-TAAAAGACAAA-CATCTTGACA-AGTTG----T-G-C--AGAA--GA----AAC------------ATT-------T-----AAAACTCG-GAAGTAA--AATC-------A----AC--A----A--ACCTGCAG---T--GGGT-----ATG------------------TTTTAATAAA----AT---TTAC----GAA-T-----A--TTTAT-TCCCACCAAAGTT--AC-------------TGCAGTTATCTTGAACA--------------AGA---TGTT----------T--------GTC--AGA--TA---GA------A-A-AT--ATCTTATAATA----A-GTA-A-AT---A--AACT---ATAT-AACTAAATATATAGAT-ATATCTAAATGATAATC---c
gi|2 : ataatcttgatcttctgcaatgtttgcttttcatcttagaccaggaataaaatgtaatggtaacctaataaagtttttgattggttgattcaaacaattggactacttcggagtattttaaaaTCTTGATCATCTTCTATGCTT-GCTT-TT-C-TAAACGACACA-CGTCTTAGCATTTTA-----T-G-C--AGAT--TATTTTTA-------------A---------TCGGGCAGAA---A-GCTCTGATTGGCTGAGAC-AG----AC--A----C--ACCT-TCACGGT--T--------ATG------------------TTTAAATAAA----AA---TTA-----AAACA-----AT-TTTAT-TTCGATAAAAGTC--AT-------------TGGA------------G--------------ATATCTTGTCTAAAGATGTTT--------GTC--AAA--TA---AAT-----A-A-CATGAT----TAACA----A-ACATA-AAT--A--A------ATACAAA--AAAT------AA-ACATATAAACGATAGTC---a
gi|10 : ggtgtacatgaatTGATCATCTTCAACGCTT-GGTAATT-C-TAAAAGAAAAAACGTCTTGG-AT-GTTG----T-G-C--AGAA--AA----AA-------------AAGTTAGAATC-----AGAAATTATGATTTGATT-GCCGTATACGA----AC--A----C--AAAT-A-----T--GA-------ACA------------------C-------AACCACGGTTATTGT----AAAAT-----AT-TTTGTATATG-CAAAAATCAAAT-------------TG-----------------------------ATA---TC------------T---------TG--ATT--TA---AA------A-A-C-----------ACA----ATGC--A-T----A--C------AT-T-AA--TAAC------ATGATAT--AAACGATAGTC---tactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|5 : aaatgtgtttgtatttgttgaatcaaacaattggactggcccggcattcccagggtatttcatca-----AT-TTTAT-TATAACATAAA-C--AT-------------TGCA------------A--------------AGG---TG------------T--------GT
gi|6 : acagtttgatcatatgcgacgcttgcttttctaaaagacaaacgtcttgacaagttcggccgagaataaaagtcaattttatttagtgaatatcgtttttgattggtcgattcaaacaaccagactacctcggagatttccatagtatttcaaaagagtatcgtttggatgtttatttctatattgaatatttttatattattagctattttagatatttattagatcttgtgcaatataactgccatgacttccgtccgaatatttattttaag-A-CA--AT------ACG----A--CA-A-AGTT-A--A------AC----G--AACT------TT-GTAT-AAAACAACA-TT---AGTCTTGATCATATGCGGCGCTT-GC-T-TTT-GTAAAAA-ACAAACGTTTT-GACAG-GTTTGGCC-G-AAAAT-AAA----AATCATTTTTA-------TT-AGCG-ATAATCGA-ATTATG-T-TT-TT-G-ATTGGT----TTA--TTCAAACAA-----GACT-A-CCTT---GGACATTTCCTTAG--TTTTCCAAAAAAA--TATCGTTTTGATGT----------TTATT---TC--T-ATA--TTCATGAT-----T----TTCA-T--ATTAT-TTGAT--A----T----T-TTCTAT--GACA---A--A-GAC-------------AACTGCCATGAT-TTCCGTCCG--AACAAATATTTTT--T--A-------A-----TT----TTA---TT---AT-A----ACA-T---------AACCAT-----TG--CAGTGG-TGTGTCTGTTTTA----GCCAATCAGATCTCACTTCC-AGATCT---ACACG---TTTC-TT-CT--GCAC----AACTTGTCAAGG-CGTTTGTATTTTAG-AA-AA-G-CAAGCGTCGCCTATGATCAAGACTttgtttcagccaatcagatctttcttccaaatccaaacgtttcttctgcacaacttgtcaagacgtttgtcgtttagaaaagcaagcgtcgcataggatcaagactgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|3 : gtgtacattgtactttA-A-C----A--A------GTAA-AG--AAAT------GG-ACCTTCA---GGTAGTCTGTAGTCTTGATCATATGCGACGCTT-GC-T-TTT-CTAAAAG-ACAAACGTCTC-GACAA-GTTCGGCC-A-AGAAT-AAA----A-------TCAGTTTTATTT-AGTGAAAAATCGA-ATAACGTT-TT-T--G-ATTGGT----TGA--AT-AAACAATCG--GACT-ACC-TC---GGACATTTCCATAT--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TC--T-ATA--TT----AA-----T----TAC--T--ATTAGAT--A---G---------T-TTCTAT--GACA---A--C-GAT-CTTGTACAAGATAACTGCCATGAC-TTCCGTCCG--AATAAATATTT-T--T--AA------A-----TT----TTA---TT---AT-A----ACA-T---------AAGCAT-----TG--CAGAGG-TTTGTTTGTTTCA----G-AAAACAGATCTTTCATCC-AGATCC---AAACA---TTTC-AT-CT--GC-------AGTTGTCAAGT-CGTTTGTCTTTTAG-AA-AA-A-CAAGCGTCGCAAATGATCAAGACT
gi|4 : tttcgttctacagactacctAGT----AGTCTTGATCATTTGCGACGTTT-GC-T-TTT-CTAAAAG-ACAAACGTCTT-GACAA-GTTCGGCC-G-AGAATAAAA----A-------TCATTTTTATCT-AGCG-AAAATCGA-ATAACG-T-TTAT--G-ATTGAT----TGA--TTCA---AATCG--GACT-ACC-TC---GGAGATCTCCATAG--TGATTCAAAAGCG--TAGCGTTTGGATGT----------TTATT---TC--T-ATAT-TC----ATTATTGT----TATAGT--ATTAG-A--T---A----T----T-TT-TGT--GACA---A--A-GAT-CTTGCACAAGAAAACTGCCATGAC-TTTCGTCCG--AATAAATATTC-T--T--AA------A-----TT----TTA---TT---AT-A----ATA-T---------AACCAT-----CG--CAGAGG-TGTGTTTATTTCA----GCCAATCAGATCTTACTT---------------CG---TTTC-TT-CT--GCAG----AACTTGTCAAAA-CGTTTGTCCTTTAG-AA-AA-T-CAAGCGTCGCATATTATCAAGACTtttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaGTC---AGTCTTGATCCTATGCGACGCTT-GC-T-TTT-CTAAACG-ACAAACGTCTT-GACAA-GTTGTGC----AGAAG-AAA-------------------CGTTT-G--G-AT--TTGGAAGAAAG-A-TC-T--G-ATTGGC----TGA--AACAAACAa
gi|16 : acagtttgatcatatgcgacgcttgcttttctaaaagacaaacgtcttgacaagttcggccgagaataaaagtcaattttatttagtgaatatcgtttttgattggtcgattcaaacaaccagactacctcggagatttccatagtatttcaaaagagtatcgtttggatgtttatttctatattgaatatttttatattattagctattttagatatttattagatcttgtgcaatataactgccatgacttccgtccgaatatttattttaagattttattataacataaacattgcaaaggtgGTCT--AGTCTTTATTATCTTCGACGCTT-GT-T-TTT-CTCATAG-ACACACGTCTagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|12 : atTT---AGTCTTGATCATATGCGACACTT-AC-T-TTT-CTAAAAG-A
gi|18 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcgtTT---AGTCTTGATCATCTGC-ACATTC-AC-T-TTT-CTTAAAG-ATAGAt
gi|3 : ---AGTCTTGATCATTTGCGACGCTT-GT-T-TTT-CTAAAAG-ACAAACGACTT-GACAA-
gi|4 : tttcgttctacagactacct---AGTCTTGATAATATGCGACGCTT-GA-T-TTT-CTAAAGG-ACAAACGTTTT-GACAA-GTTCTGC----AGAAG-AAA----ctgcagatgaaatgtttggatctggatgaaagatctgttttctgaaacaaacaaacctctgcaatgcttatgttataataaaatttaaaaatatttattcggacggaagtcatggcagttatcttgtacaagatcgttgtcatagaaactatctaatagtaattaatatagaaataaacatccaaccgatactcttttgaaataatatggaaatgtccgaggtagtccgattgtttattcaaccaatcaaaaacgttattcgatttttcactaaataaaactgattttattcttggccgaacttgtcgagacgtttgtcttttagaaaagcaagcgtcgcatatgatcaagactacagactacctgaaggtccatttctttacttgtttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|7 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaagtagtcttgatcatttgcgacgtttgcttttctaaaagacaaacgtcttgacaagttcggccgagaataaaaatcatttttatctagcgaaaatcgaataacgtttatgattgattgattcaaatcggactacctcggagatctccatagtgattcaaaagcgtagcgtttggatgtttatttctatattcattattgttatagtattagatatttttgtgacaaagatcttgcacaagaaaactgccatgactttcgtccgaataaatattcttaaattttattataatataaccatcgcagaggtgtgtttatttcagccaatcagatcttacttcg---AGTCTTGATCATGCGCGACACTT-GC-T-TTT-CAAAAAA-ACAAATGTTTC-GACAA-GCTCGGCC-G-AGGAT-AAATCTCA-------TTT---TTATTT-AACA-AAAATCAA-ATAACG-T-TT-T--G-ATTGGT----TGAATTTCAAA---TCG--GAC----T-TCCTTGGAGGTTTCAATAG--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TC--T-ATA--TTCATTAT-----T----TTTA-T--ATTAT-T--AGATA----T----T-TTCTAT--GACA---A--A-AAT-CTTGTACAAGAAATCTTCCATCAC-TTCCGTCCG--AATAAATATTT-T--T--AA------A-----TT----TTA---TT---AT-T----ATA-TTAT------AGCCAT-----CA--CAGAGG-TGTGTTTGTTTCT----GCCAT-TAGATCTTATTTCC-AAATCA---AAGTG---TTTC-TT-CT--GCAC----AACTTGTCAAGA-CGTTTGTAGTTTAG-AA-AA-G-CAAGCATTGCATATGATCAAGACTa
gi|7 : t---AGTCTTGATCATATGCAATGCTT-GC-T-TTT-CTAAACT-ACAAACGTCTT-GACAA-GTT
gi|6 : tagtcttgatcatgcgcgacacttgcttttcaaaaaaacaaatgtttcgacaagctcggccgaggataaatctcatttttatttaacaaaaatcaaataacgttttgattggttgaatttcaaatcggacttccttggaggtttcaatagtatttcaaaagagtatcggttggatgtttatttctatattcattatttttatattattagatattttctatgacaaaaatcttgtacaagaaatcttccatcacttccgtccgaataaatatttttaaattttattattatattatagccatcacagaggtgtgtttgtttctgccattagatcttatttccaaatcaaagtgtttcttctgcac---AGTCTTGATCATAGGCGACGCTT-GC-T-TTT-CTAAAAT-ACAAACGCCTT-GACAA-GTT
gi|15 : gtgtacattgtactttacaatacgacaaagttaaacgaactttgtataaaacaacattagtcttgatcatatgcggcgcttgcttttgtaaaaaacaaacgttttgacaggtttggccgaaaataaaaatcatttttattagcgataatcgaattatgtttttgattggtttattcaaacaagactaccttggacatttccttagttttccaaaaaaatatcgttttgatgtttatttctatattcatgattttcatattatttgatattttctatgacaaagacaactgccatgatttccgtccgaacaaatattttttaattttattataacataaccattgcagtggtgtgtctgttttagccaatcagatctcacttccagatctacacgtttcttctgcac---AGTCTTGGTCATTTGCAACGTTT-GCTT-TTT-CTAACAG-A
gi|17 : ---AGTCTTGATAATTTGTGATACTT-GC-T-TCTACTGAAAC-ACAAATGagaaatcgcgggtttatttgtttatt
gi|8 : tGTCTTGATCATATGCGACGCTT-GT-T-TTT-CT
gi|9 : ctagtcttgatcatatgcgacaaacgtctttaacgagttcgaccgagaataaaagtaacgtattttcaatgacaatctgataacgttttatgattgactgaatcaaacaatcggactacctcggaaatgtccttagtatttcaacagagtatcggtttgatgtgtattatatatgtgttagttttatattattacatatttctatgacacagatcttgtacaagataattgccatgacttctatccgaataaattgttttaaattttattacatgtatagcataaccattgcagaggtttgtttgtttcagccaatcagatcctacttctagattcaaacatttcttctgcccaacgtgtcaGTCTTGATTATATCAGAAGCTT-GC-T-TTT-CTAAAAG-ACAAACATCTT-GACAA-GTTGTGC----AGAAG-AAAC---AT------TTAAAAc
gi|9 : ataatcttgatcttctgcaatgtttgcttttcatcttagaccaggaataaaatgtaatggtaacctaataaagtttttgattggttgattcaaacaattggactacttcggagtattttaaaagattatcatttagatatatctatatatttagttatatagtttatttacttattataagatattttctatctgacaaacatcttgttcaagataactgcagtaactttggtgggaataaatattcgtaaattttattaaaacatacccactgcaggtttgttgattttacttccgagCTTGATCTTCTGCAATGTTT-GC-T-TTT-C-------------ATCTT-A---------GACC-A-GGAAT-AAA----A-------T-------GT---AATG-GTAACCTA-ATAAAG-T-TT-TT-G-ATTGGT----TGA--TTCAAACAATTG--GACT-ACT-TC---GGA----------G--TATTTTAAAAGAT--TATCATTTAGATATATCTATATATTTAGT---TA--T-ATAGTTT----AT-----T----TACT-T--ATTA--T--A---AGATAT----T-TTCTATCTGACA---A--A-CAT-CTTGTTCAAGATAACTGCAGTAAC-TTTGGTGGG--A-----------A--TAAAT------A-----TTCG--TAAATTTT---AT-TAAA-ACA-T---------ACCCAC-----TG--CAG-------GTT--TGTTG-------------ATTTTACTTCCGAGTTTT---AAATG---TTTC-TT-CT--GCAC----AACTTGTCAAGA-TGTTTGTCTTTTAG-AA-AA-G-CAAGCTTCTGATATAATCAAGACa
gi|2 : ataatCTTGATCATCTTCTATGCTT-GC-T-TTT-CTAAACG-ACACACGTCTT-a
gi|13 : ggtgtacatgaattCTTGATCATCTGCGATGCTT-AA-T-TC--CTTAAAG-ACAAATGTCTT-GAAAG-GTTCCACCTGCAAAAT-GAA----A-------agcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|14 : ttCTTGATGATACTCGGCGCTTAGC-T-TTC-CTGAAA--ACAAATGTCTT-GACAA-atttcatggatta
gi|5 : aaTTGATCATATGCGACGCTT-GC-T-TTT-CTAAAAG-ACAAACGTCTT-GACAA-GTTCGGCC-G-AGAAT-AAA----AG------TCAATTTTATTT-AGTG-A--------ATATCG-T-TT-TT-G-ATTGGT----CGA--TTCAAACAACCA--GACT-A-CCTC---GGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TC--T-ATA--TTGAATAT-----T----TTTA-T--ATTAT-T--A---G----C----TATTTTA---GATATTTATTA-GAT-CTTGTGCAATATAACTGCCATGAC-TTCCGTCCG--AATAT-------T--T--ATTTTAAGA-----TT----TTA---TT---AT-A----ACA-T---------AAACAT-----TG--CAAAGG-TGTGTTTGTTTCA----GCCAATCAGATCTTTCTTCC-AAATCC---AAACG---TTTC-TT-CT--GCAC----AACTTGTCAAGA-CGTTTGTCGTTTAG-AA-AA-G-CAAGCGTCGCATAGGATCAAGACTattataacggattatacaaattgaat
gi|10 : acagtTGATCATCTTCAACGCTT-GG-TAATT-CTAAAAGAAAAAACGTCTT-G--GATGTTGTGCA-G-AAAAA-AAA----G-------TTAGAATgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|11 : aaatgtgtttgtatttgttgaatcaaacaattggactggcccggcattcccagggtatttcatcagactatcgtttatatcatgttattaatgtatgcattgtgtttttaaatcaagatatcaatttgatttttgcatatacaaaatattttacaataaccgtggttgtgttcatatttgtgttcgtatacggcaatcaaatcataatttctgTT-GC-T-TTT-ATAAAAG-ATACACGTCAT-GAC-C-GTTTG-TC-A-AAAAT-ATG----T-------TTAAAA--------------AATCAA-ATAA-G-A-TT-T--G-ATTGGC----TGT--TTAAAAAAAACAACGAC--A-T-
gi|8 : ttatcttatcatgG-ACAAACGTCTTTAACGA-GTTCGACC-G-AGAAT-AAA----A-------GTAACGTATTTTCAATG-ACAATCTG-ATAACG-T-TT-TATG-ATTGAC----TGA--ATCAAACAATCG--GACT-A-CCTC---GGAAATGTCCTTAG--TATTTCAACAGAG--TATCGGTTTGATGT----------GTATTATATA--T-GTG--TT----AG-----T----TTTA-T--ATTAT-T--AC--A----TA---T-TTCTAT--GACA---C--A-GAT-CTTGTACAAGATAATTGCCATGAC-TTCTATCCG--A-----------A--T--AA------A-----TTGTTTTAAATTTT---AT-T----ACA-TGTATAGCATAACCAT-----TG--CAGAGG-TTTGTTTGTTTCA----GCCAATCAGATCCTACTTCT-AGATTC---AAACA---TTTC-TT-CT--GCCC----AACGTGTCA----------------AG-AA-AA-A-CAAGCGTCGCATATGATCAAGACattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|12 : ctagtcttgatcatatgcAATG-T-CT-T--G-ACAATT----TCT--TTCAAACAATCG--GACT-ACC-TC---AACGATTTCTATGG--TATTTCAACAGAC--TGTCGTTTAGc
gi|10 : aAATG-TGTT-T--GTATTTGT----TGA--ATCAAACAATTG--GACTGG-C-CC---GGCA-TTCCCAGGG--TATTTCATCAGAC--TATCG--------T----------TTATA---TC----ATG--TT----AT-----TAATGTATG-C--ATT-G-T--G-------------T-TTTTA---AATC---A--A-GAT-ATC---------AATT----TGAT-TTTTGC-----A-----------TA-T--AC------A------------AA---AT---AT-TTT--ACAAT---------AACCGTGGTTGTGTTCATATT-TGTGTTCGTATAC----GGCAATCAAATCATAATTTC-TGATTC---TAACT---TTTT-TTTCT--GCAC----AACAT-CCAAGACGTTTTTTCTTTTAG-AATTA-C-CAAGCGTTGAAGATGATCAtcttgatcatatgcgacacttacttttctaaaagat
gi|2 : a-T-TT-T--G-ATTGGTGGATTGA--TTCAAACGATAG--GAC--A-A-TCTT-GGCGATTTCCATA----ATTTTAAAAAAAACTGTC-GTAAGATA-----------TTATT---TCAGT-AT---TC----TT-----T----TTTA----ATTAGAT--A---G----TA---T-CTATCT--GACA---A--ATGTT-TTTGACAATATTAGCTGCAATGAC--TTCGT-CGAAA-----------TAAT--AC------ATT---TT----TAA---TT---GTATATAAACA-T---------AACGGT-----TT--CGGGTG-TGTGTTT-TGTCA----GCCAA
gi|11 : ggtgtacatgaattcttgatcatcttctatgcttgcttttctaaacgacacacgtcttagcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagt-T-TT-T--G-ATTGGT----TGA--AACAAACAGCCG--GGC--G-T-T
gi|2 : ttatcttatcatgttgcttttataaaagatacacgtcatgaccgtttgtcaaaaatatgtttaaaaaatcaaataagatttgattggctgtttaaaaaaaacaacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaATTTCCATAGCGTGTGTCAGTAGAC--TATCGTTTATATGT----------TTATT---TT--TTGTA--TTT---AT-----T----TATG-TTTGTTAA-T--C---A----TGTTAT-TTATTT--GACA---A--A-CATCTTTAGACAAGATATCTCCAATGAC-TTTTATCGA--A-----------A--T--AA------AATTGTTT----TAA---TTTTTAT-TTAA-ACA-T---------AACCGT-----------GAAGGTGTGTCTGTCTCA----GCCAATCAGAGCTTTCTGCC-CGATTA---AAAA------TA-AT-CT--GCAT----AAAATGCTAAGA-CGTGTGTCGTTTAG-AA-AA-G-CAAGCATAGAAGATGATCAAGAgtatca
gi|11 : ggtgtacatgaatTGTTTTTTTTAAACAGCCAATCAAATCTTATTT----GATTTTTTAAACA---TATT-TT--T--G-AC----AAACGGTCATGA-CGTGTATCTTTTAT-AA-AA-G-CAAcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|4 : ttatcttatcatgCT-AGATAA---AAATGATTTTTA-TT-CTCGGCCG----AACTTGTCAAGA-CGTTTGTCTTTTAG-AA-AA-G-CAAACGTCGCAAATGATCAAGACTacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaagtACT---TTTA-TT-CTCGGCCG----AACTTGTCAAGA-CGTTTGTCTTTTAG-AA-AA-G-CAAGCGTCGCATATGATCAA-ACTcgaaaatcgaataacgtttatgattgattgattcaaatcggactacctcggagatctccatagtgattcaaaagcgtagcgtttggatgtttatttctatattcattattgttatagtattagatatttttgtgacaaagatcttgcacaagaaaactgccatgactttcgtccgaataaatattcttaaattttattataatataaccatcgcagaggtgtgtttatttcagccaatcagatcttacttcgtttcttctgcagaacttgtcaaaacgtttgtcctttagaaaatcaagcgtcgcatattatcaagacta
gi|3 : ac---TTTA-TT-CTTGGCCG----AACTTGTCGAGA-CGTTTGTCTTTTAG-AA-AA-G-CAAGCGTCGCATATGATCAAGACTcaattttatttagtgaatatcgtttttgattggtcgattcaaacaaccagactacctcggagatttccatagtatttcaaaagagtatcgtttggatgtttatttctatattgaatatttttatattattagctattttagatatttattagatcttgtgcaatataactgccatgacttccgtccgaatatttattttaagattttattataacataaacattgcaaaggtgtgtttgtttcagccaatcagatctttcttccaaatccaaacgtttcttctgcacaacttgtcaagacgtttgtcgtttagaaaagcaagcgtcgcataggatcaagactgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|13 : tttcgttctacagactacctagtcttgatcatttgcgacgcttgtttttctaaaagacaaacgacttgacaactgcagatgaaatgtttggatctggatgaaagatctgttttctgaaacaaacaaacctctgcaatgcttatgttataataaaatttaaaaatatttattcggacggaagtcatggcagttatcttgtacaagatcgttgtcatagaaactatctaatagtaattaatatagaaataaacatccaaccgatactcttttgaaataatatggaaatgtccgaggtagtccgattgtttattcaaccaatcaaaaacgttattcgatttttcactaaataaaactgat---TTTCATT-TT--GCAGGTGGAACCTTTCAAGA-CATTTGTCTTTAAG-GA-A--T-TAAGCATCGCAGATGATCAAGATTacagactacctgaaggtccatttctttacttgtttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|7 : ttTC-CT-CG--GCCG----AGCTTGTCGAAA-CATTTGTTTTTTTG-AA-AA-G-CAAGTGTCGCGCATGATCAAGACTtcatggatta
gi|6 : tTT-TT-CG--GCCA----AACCTGTCAAAA-CGTTTGTTTTTTAC-AA-AA-G-CAAGCGCCGCATATGATCAAGACTtaaatctcatttttatttaacaaaaatcaaataacgttttgattggttgaatttcaaatcggacttccttggaggtttcaatagtatttcaaaagagtatcggttggatgtttatttctatattcattatttttatattattagatattttctatgacaaaaatcttgtacaagaaatcttccatcacttccgtccgaataaatatttttaaattttattattatattatagccatcacagaggtgtgtttgtttctgccattagatcttatttccaaatcaaagtgtttcttctgcacaacttgtcaagacgtttgtagtttagaaaagcaagcattgcatatgatcaagact
gi|14 : gtgtacattgtactttacaatacgacaaagttaaacgaactttgtataaaacaacattTTGTCAAGA-CATTTGT-TTTCAG-GA-AA-GCTAAGCGCCGAGTATCATCAAGATTtaaaaatcatttttattagcgataatcgaattatgtttttgattggtttattcaaacaagactaccttggacatttccttagttttccaaaaaaatatcgttttgatgtttatttctatattcatgattttcatattatttgatattttctatgacaaagacaactgccatgatttccgtccgaacaaatattttttaattttattataacataaccattgcagtggtgtgtctgttttagccaatcagatctcacttccagatctacacgtttcttctgcacaacttgtcaaggcgtttgtattttagaaaagcaagcgtcgcctatgatcaagact
gi|18 : aaTCTATCTTTAAG-AA-AA-G-TGAATGT-GCAGATGATCAAGACTataacggattatacaaattgaat
gi|17 : TTTGTGTTTCAGTAG-AA-G-CAAGTATCACAAATTATCAAGACTaa
gi|12 : tATCTTTTAG-AA-AA-G-TAAGTGTCGCATATGATCAAGACTtg
gi|15 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcgtttTCTGTTAG-AA-AAAG-CAAACGTTGCAAATGACCAAGACT
gi|8 : TGTCGCATATGATCAAGACTagaaatcgcgggtttatttgtttatt
Alignments
lowQualScore : 11111111111111111111111
lowQualScore : 33333 333 2 888888888 22 88888888888888888888888 1 22 3333 333 333333333 11 1111 33333333333333333 11 222222 1111111111 2222 444444444444 222222222
lowQualScore : 6 44444 4 1 7 444 1 1 5 5 0 3 888 0 000000000 6 66 1 6 77777777777777777777777 666 7777 77 0 11 3 6 6666 2 2 555 555555555 1 4 33 3 77 3 1111 1 2 4 4 4 55555555555555555 77777 5 1 0 3 3 3 11 3 7777 44 111111 3 0 5555 0 777 2 4 555 4444444444 555 3 7777 44 4444 3 1 1 3 77 44 111111111111 3 777 55555555 7777 3 1 666 3 0 666 3 55 3 3 3 3 3 88 3 5 666666666 3 666 1 99999 55 7777 0 3 88888 1 3 1 3 00 3 3
lowQualScore : . ..... . . . ... . . . . . . ... . ......... . .. . . ....................... ... .... .. . .. . . .... . . ... ......... . . .. . .. . .... . . . . . ................. ..... . . . . . . .. . .... .. ...... . . .... . ... . . ... .......... ... . .... .. .... . . . . .. .. ............ . ... ........ .... . . ... . . ... . .. . . . . . .. . . ......... . ... . ..... .. .... . . ..... . . . . .. . .
lowQualScore : 0 00000 0 0 3 888 0 0 7 7 3 6 555 0 000000000 0 00 0 0 55555555555555555555555 555 0000 00 5 00 0 0 0000 5 5 000 000000000 0 7 77 7 33 2 0000 0 0 4 4 4 88888888888888888 88888 0 0 9 3 3 3 22 3 1111 66 000000 3 2 0000 4 555 2 5 888 6666666666 888 3 1111 66 6666 3 0 9 3 77 66 888888888888 3 888 99999999 3333 6 5 444 6 4 444 6 00 6 6 6 6 6 22 6 8 555555555 6 444 6 11111 00 1111 5 6 55555 2 6 0 3 77 3 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTGCGACGCTTGC-TTTT-CTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTG--------TTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACANTGTNTCGTGTTGTGAAAACAATTAACAAGCAANAAATANAGAAATNGANATCGAAACGACAGTC---AGTCTTGATCATNTGCGACGCTTGCTTTTCTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAA-N-T--AA---T-T---ATT--T--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACT-A-C-T-CGGAGATTTCCATA-G--TATTTCAAAAGAG--TATCGTTTGGAT---GT----------TTATT---TCT-AT----A--TT----AT-TTTTATAT-TA-TT--A---AT-------T-TTCTAT--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATA---A-A--T-A-TT-T-T-AA-A-TTTTATTAT-----A---A-CAT---AACCAT-----TG--CAGAGGTGTGTTTGTTT----CAGCCAATCAGATCTTACTTCC-AGATTC---AAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
Reference ( family-1424 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACGAAGTCGTTATATNCGTCGATNTCTAGTCTTGATCATNTGCGACGCTTGC-TTTT-CTAAAAGACAAACGTCTTGACA-AGTTTG-CAGA---------AGAAAATAGAAGTNAGATCTGATTGGCTGAAACACACCTCTGCAATGGTATTATATAAAATTATAAAATATTTTATTCGGACGGAAGTCATTGCAGAT---NTGTGTCATA---TAAAAACAATTAATAAGCAANAAATATAGAAATAAACATCCAAACGATAGTC---AGTCTTGATCATNTGCGACGCTTGCTTTTCTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAA-T-T--AA---T-T---ATT--T--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACT-A-C-T-CGGAGATTTCCATA-G--TATTTCAAAAGAG--TATCGTTTGGAT---GT----------TTATT---TCT-AT----A--TT----AT-TTNTATAT-TA-NT--A---AT-------T-TTCTAT--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATA---A-A--T-A-TT-T-T-AN-A-TTTNATTAT-----T---A-CAT---AACCGT-----TG--CAGAGGTGTGTTTGTTT----CAGCCAATCAGATCTTACTTCC-AGATCC---AAACGTTTCTT-CTGCANAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
gi|1 : AAACAAAATCGTTATATACATTGATATTTAGTCTTGATCATCTTCGACGCTTGC-TTTT-TTAAAAGACAAACATCTTAACATAGTTTG-CAGA---------AAAAAATAAAAGTTAGATTTGATTGGCCGAAACACACCTCTG----------ATGTAAAGTTGTGAATTATTTTATTCTGACATAAGTCATTGCAAAT---ATGTGTCATG---TAAAAACAATTAACAAGCAAAAAATATAGAAATATATATTGAAACGATAGTC---AGCCTTGATCATTTGCGACGCTTGCTTTTCTAAAAGACAAACGTCTT-GACGAGTTCGACC-G-AGAATAAAA-T-TAAAA---T-A---GTT--T--AGCG-ATAATCGGATAACG-T-TT-T--G-ACTGGT----TGA--TTCAAACAATCGGAC--A-T-T-CGGAAATTTCCATA-G--TATTTCAGAAAAG--TATCGGTTGGAT---GT----------TTATT---TCT-AT----A--TC----AT-TTATATAT-TA-GT--A---AT-------T-TTCTAT--GACA---A--A-GATTTT--GTAAAAGG-TAACTACCA---TGACATTCCGTCCGA------------------T-T-AC-A-TTTAATTAT-----T---A-CAT---AACCAT-----TG--CAGAAGTGTGTTTGTGT----TAGCCAAACATATCTTACTTCC-AGATTC---AAACGTTTCTT-CTGCACAACTTGTCAAGAGG-TTTATCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACT
gi|10 : ttgaaatgaaagcgtctggatggggggaaAATG-TGTT-T--GTATTTGT----TGA--ATCAAACAATTGGACT-GGC-C-CGGC-ATTCCCAGG-G--TATTTCATCAGAC--TATCGTTT---------------------ATA---TC--AT----G--TT----AT-TAATGTATGCA-TT--G---TG-------T-TTTTA---------------AATC--------AAGA-TA----TCAATTTGAT-TTTTG--CATATACAAA-A--T-A-TT-T-T-AC-A----------------------AT---AACCGTGGTTGTGTTCATATTTGTGTTCGTAT----ACGGCAATCAAATCATAATTTC-TGATTC---TAACTTTTTTTTCTGCACAACAT-CCAAGACGTTTTTTCTTTTAGAATTACC-AAGCGTTGAAGATGATCA
gi|11 : aTGTTTTTTTTAAACAGCCAATCAAATCTTATTT----GATTTTTTAAACATATTTT--TG-ACAAACGGTCATGACG-TGTATCTTTTATAA-AAGC-AA
gi|11 : ttatcttatcatgTTGC-TTTT-ATAAAAGATACACGTCATGAC--CGTTTGTCAAAAATATGTTTAAAAAAT-CAAATAAGATTTGATTGGCTG---------T-----------TTAAAAAAAACAACGACATATTTTATTTAGATTAAAGGCATTGTAAATACATTGTCTAGTATTGTGAAA-----TA--AAACAGGACATACAAAAAGCGAAATCAAAACGACAGacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|11 : ttatcttatcatg-T-TT-T--G-ATTGGT----TGA--AACAAACAGCCGGGC------------GTTTTCCTTACG--TGCCT--ACATAGC-TGTCGTTTTGATTTCGC----------TT-TT---TGT-AT----G--TC----CTGTTTTAT-T-TC-AC--A---A----------TACTA---GACA---A--T-G-TATT---TACAActatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|12 : ttatcttatcatgttgcttttataaaagatacacgtcatgaccgtttgtcaaaaatatgtttaaaaaatcaaataagatttgattggctgtttaaaaaaaacaacgacatattttatttagattaaaggcaAATG-T-CT-T--G-ACAATT----TCT--TTCAAACAATCGGACT-A-CCT-CAACGATTTCTATG-G--TATTTCAACAGAC--TGTCGTTTAGgtatca
gi|12 : aGTCG---TTTAGTCTTGATCATATGCGACACTTAC-TTTT-CTAAAAGAtcttgatcatatgcgacacttacttttctaaaagat
gi|13 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagact---AATCTTGATCATCTGCGATGCTTAA-TTCCTTAAAGACAAATGTCTT-GAAAGGTTCCACCTGCAAAATGAAA-t
gi|14 : ttTTGTCAAGACA-TTTGT-TTTCAGGA-AAGCTAAGCGCCGAGTATCATCAAGATTtcatggatta
gi|15 : aaAAACAAA-----TAAACCCG-CGATTTCTAGTCTTGGTCATTTGCAACGTTTGCTTTTT-CTAACAGAataacggattatacaaattgaat
gi|16 : ATGTCTAGTCTTTATTATCTTCGACGCTTGT-TTTT-CTCATAGACACACGTCTatt
gi|17 : TAGTCTTGATAATTTGTGATACTTGC-TTCTACTGAAACACAAATG
gi|18 : TAGTCTTGATCATCTGC-ACATTCAC-TTTT-CTTAAAGATAGA
gi|2 : GATTTCCATA-GCGTGTGTCAGTAGAC--TATCGTTTATAT---GT----------TTATT---TTTTGT----A--TTT---AT-TTATGT-T-TG-TT--A---ATCATGTTAT-TTATTT--GACA---A--A-CATCTTTAG-ACAAGA-TATCTCCAA---TGAC-TTTTATCGAAATA---A-AATT-G-TT-T-T-A--A-TTT--TTAT-----TTAAA-CAT---AACCGT----------GAAGGTGTGTCTGTCT----CAGCCAATCAGAGCTTTCTGCC-CGATTA---AAAA---TAAT-CTGCATAAAATGCTAAGACG-TGTGTCGTTTAGAA-AAGC-AAGCATAGAAGATGATCAAGAa
gi|2 : ggtgtacatgaat-T-TT-T--G-ATTGGTGGATTGA--TTCAAACGATAGGACA-ATC-T-TGGCGATTTCCATA-----ATTTTAAAAAAAACTGTCG-TAAGAT---A-----------TTATT---TCA-GT----A--TT----CT-TTTTTAAT-TAGAT--A---GTA------T-CTATCT--GACA---A--ATGTTTTT--G-ACAATATTAGCTGCAA---TGAC-TT-CGTCGAAATA---ATA--C-A-TT-T-T-TA-A-TTGTA-TATA----A---A-CAT---AACGGT-----TT--CGGGTGTGTGTTT-TGT----CAGCCAAaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|3 : ggtgtacatgaattcttgatcatcttctatgcttgcttttctaaacgacacacgtcttagcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtAACAAGTAAAGAAATGGACCTTCA---GGTAGTCTGTAGTCTTGATCATATGCGACGCTTGCTTTTCTAAAAGACAAACGTCTC-GACAAGTTCGGCC-A-AGAATAAAA-T-C--AGTT-T-T---ATT--T--AGTGAAAAATCGAATAACGTT-TT-T--G-ATTGGT----TGA--AT-AAACAATCGGACT-ACC-T-CGGACATTTCCATA-T--TATTTCAAAAGAG--TATCGGTTGGAT---GT----------TTATT---TCT-AT----A--TT----AA-TTAC-TAT-TAGAT--A---G--------T-TTCTAT--GACA---A--C-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATA---A-A--T-ATTT-T-T-AA-A-TTTTATTAT-----A---A-CAT---AAGCAT-----TG--CAGAGGTTTGTTTGTTT----CAGAAAA-CAGATCTTTCATCC-AGATCC---AAACATTTCAT-CTGCAG---TTGTCAAGTCG-TTTGTCTTTTAGAA-AAAC-AAGCGTCGCAAATGATCAAGACT
gi|4 : tttcgttctacagactacctAGT----AGTCTTGATCATTTGCGACGTTTGCTTTTCTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAA-A-T--CATTTT-T---ATC--T--AGCG-AAAATCGAATAACG-T-TTAT--G-ATTGAT----TGA--TTCA---AATCGGACT-ACC-T-CGGAGATCTCCATA-G--TGATTCAAAAGCG--TAGCGTTTGGAT---GT----------TTATT---TCT-ATATTCA--TT----AT-TGTTATAG-TA-TT--AG--ATA------T-TTTTGT--GACA---A--A-GATCTT--GCACAAGA-AAACTGCCA---TGAC-TTTCGTCCGAATA---A-A--T-A-TTCT-T-AA-A-TTTTATTAT-----A---A-TAT---AACCAT-----CG--CAGAGGTGTGTTTATTT----CAGCCAATCAGATCTTACTT---------------CGTTTCTT-CTGCAGAACTTGTCAAAACG-TTTGTCCTTTAGAA-AATC-AAGCGTCGCATATTATCAAGACTtttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaC---AGT-TTGATCATATGCGACGCTTGCTTTTCTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAGT-C--AA---T-TTT-ATT--T--AGTG-AATATCG--T-----T-TT-T--G-ATTGGT----CGA--TTCAAACAACCAGACT-A-CCT-CGGAGATTTCCATA-G--TATTTCAAAAGAG--TATCGTTTGGAT---GT----------TTATT---TCT-AT----A--TTGAATAT-TTTTATAT-TA-TT--A---GC-------TATTTTA---GATATTTATTA-GATCTT--GTGCAATA-TAACTGCCA---TGAC-TTCCGTCCGAATA---T-T--T-A-TT-T-T-AAGA-TTTTATTAT-----A---A-CAT---AAACAT-----TG--CAAAGGTGTGTTTGTTT----CAGCCAATCAGATCTTTCTTCC-AAATCC---AAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCGTTTAGAA-AAGC-AAGCGTCGCATAGGATCAAGACTa
gi|6 : aAAACAACA-TT---AGTCTTGATCATATGCGGCGCTTGCTTTTGTAAAAAACAAACGTTTT-GACAGGTTTGGCC-G-AAAATAAAA-A-T--CA---T-T---TTTATT--AGCG-ATAATCGAATTATG-T-TT-TT-G-ATTGGT----TTA--TTCAAACAA---GACT-A-CCT-TGGACATTTCCTTA-G--TTTTCCAAAAAAA--TATCGTTTTGAT---GT----------TTATT---TCT-AT----A--TTCATGAT-TTTCATAT-TA-TTTGAT--AT-------T-TTCTAT--GACA---A--A-GAC---------------AACTGCCA---TGAT-TTCCGTCCGAACA---A-A--T-A-TT-T-T-TT-AATTTTATTAT-----A---A-CAT---AACCAT-----TG--CAGTGGTGTGTCTGTTT----TAGCCAATCAGATCTCACTTCC-AGATCT---ACACGTTTCTT-CTGCACAACTTGTCAAGGCG-TTTGTATTTTAGAA-AAGC-AAGCGTCGCCTATGATCAAGACTgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|7 : gtgtacattgtactttacaatacgacaaagttaaacgaactttgtata---AGTCTTGATCATGCGCGACACTTGCTTTTCAAAAAAACAAATGTTTC-GACAAGCTCGGCC-G-AGGATAAAT-C-T--CA---T-TTTTATT--T--AACA-AAAATCAAATAACG-T-TT-T--G-ATTGGT----TGAATTTCAAA---TCGGACTTC-C-T-TGGAGGTTTCAATA-G--TATTTCAAAAGAG--TATCGGTTGGAT---GT----------TTATT---TCT-AT----A--TTCATTAT-TTTTATAT-TA-TT--AGATAT-------T-TTCTAT--GACA---A--A-AATCTT--GTACAAGA-AATCTTCCA---TCAC-TTCCGTCCGAATA---A-A--T-A-TT-T-TTAA-A-TTTTATTAT-----T---A-TATTATAGCCAT-----CA--CAGAGGTGTGTTTGTTT----CTGCCA-TTAGATCTTATTTCC-AAATCA---AAGTGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTAGTTTAGAA-AAGC-AAGCATTGCATATGATCAAGACT
gi|8 : t---AGTCTTGATCATATGCGAC-------------------AAACGTCTTTAACGAGTTCGACC-G-AGAATAAAA-G-T--AA---CGT---ATT--TTCAATG-ACAATCTGATAACG-T-TT-TATG-ATTGAC----TGA--ATCAAACAATCGGACT-A-CCT-CGGAAATGTCCTTA-G--TATTTCAACAGAG--TATCGGTTTGAT---GT----------GTATTATATAT-GT----G--TT----AG-TTTTATAT-TA-TT--AC--ATA------T-TTCTAT--GACA---C--A-GATCTT--GTACAAGA-TAATTGCCA---TGAC-TTCTATCCGAATA---A-A--TTG-TT-T-T-AA-A-TTTTATTACATGTAT---AGCAT---AACCAT-----TG--CAGAGGTTTGTTTGTTT----CAGCCAATCAGATCCTACTTCT-AGATTC---AAACATTTCTT-CTGCCCAACGTGTCA----------------AGAA-AAAC-AAGCGTCGCATATGATCAAGAC
gi|9 : ct---AATCTTGATCTTCTGCAATGTTTGCTTTTC------------ATCTT-A--------GACC-A-GGAATAAAA-TGT--AA---T----------------G-GTAACCTAATAAAG-T-TT-TT-G-ATTGGT----TGA--TTCAAACAATTGGACT-A-C-TTCGGAG-------------TATTTTAAAAGAT--TATCATTTAGAT---ATATCTATATATTTAGT---TAT-AT----AGTTT----AT-TTACTTAT-TA-TA--AGATAT-------T-TTCTATCTGACA---A--A-CATCTT--GTTCAAGA-TAACTGCAG---TAAC-TTTGGTGGGAATA---A-A--T-A-TT-CGT-AA-A-TTTTATTAA-----A---A-CAT---ACCCAC-----TG--CAG------GTTTGTT---------------GATTTTACTTCCGAGTTTT---AAATGTTTCTT-CTGCACAACTTGTCAAGATG-TTTGTCTTTTAGAA-AAGC-AAGCTTCTGATATAATCAAGACc
Alignments
lowQualScore : 22222 1 111 1 333333333 11 666666666666666 222 222 2222 11 11 1 11 11111 333333333 11 222 1111111111 2222 444444444444 11111111
lowQualScore : 66666 1 1 5 1 2 6 8 1 1 1 999 5 999999999 66 1 777777777777777 1 1 1 22 1 22 1 666 1 2 111 4444 7 44 1 33 1 0 33 1 44 0 8 55555 1 3 4 4 4 66 5 666666666 77777 5 1 0 3 3 3 22 3 7777 55 3 000 3 1 44 555 3 3 5555555555 666 3 7777 55 6666 2 2 3 55 999999999999 3 99999 666666 3 55 5 3 1 666 3 0 3 55 3 3 3 3 3 3 3 11111111 666 99999 55 4 0 0 4 3 00 3 3
lowQualScore : ..... . . . . . . . . . . ... . ......... .. . ............... . . . .. . .. . ... . . ... .... . .. . .. . . .. . .. . . ..... . . . . . .. . ......... ..... . . . . . . .. . .... .. . ... . . .. ... . . .......... ... . .... .. .... . . . .. ............ . ..... ...... . .. . . . ... . . . .. . . . . . . . ........ ... ..... .. . . . . . .. . .
lowQualScore : 55555 0 0 5 0 5 5 0 0 0 0 555 5 000000000 55 0 555555555555555 0 0 0 00 0 00 0 000 0 5 000 0000 3 00 0 88 0 0 55 0 88 8 0 11111 0 6 4 4 4 00 0 444444444 88888 0 0 9 6 6 6 33 6 7777 00 6 555 6 0 66 666 1 7 9999999999 444 6 7777 00 8888 6 7 6 00 333333333333 6 99999 777777 6 00 6 6 5 444 6 4 6 00 6 6 6 6 6 6 6 22222222 444 11111 00 0 7 7 0 6 77 3 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA---T-T---ATT--T--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACT-A-CCT-CGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATT--AG--AT-------T-TTCTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-T-A-A-ATTTTATTA------T-AACAT---AACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
Reference ( family-1424 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTGCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACANTGTNTCGTGTTGTGAAAACAATTAACAA-GCAANAAA--TANA-GAAATNGANATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA---T-T---ATT--T--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACT-A-C-T-CGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATT--A---AT-------T-TTCTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-T-A-A-ATTTTATTA------T-AACAT---AACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATTCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
gi|1 : AAACAAAATCGTTATATACATTGATATTTAGTCTTGATCATCTTCGACGCTTGC-TTTTTTAAAAGACAAACATCTTAACATAGTTTG-CAGAAA---------AAAATAAAAGTTAGATTTGATTGGCCGAAACACACCTCTG--ATGTAAAGTTGTGAATTATTTTATTCTGACATAAGTCATTGCAAATA---TGTGTCATGT---AAAAACAATTAACAA-GCAAAAAA--TATA-GAAATATATATTGAAAC-GATAGTC----AGCCTTGATCATTTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACGAGTTCGACC-G-AGAATAAAAT-T-AAAA-T-A---GTT--T--AGCG-ATAATCGGATAACG-T-TT-T--G-ACTGGT----TGA--TTCAAACAATCGGAC--A-T-T-CGGAAATTTCCATAG--TATTTCAGAAAAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TC----ATTTATATAT-TAGT--A---AT-------T-TTCTA--T--GACA---A--A-GATTTT--GTAAAAGG-TAACTACCA---TGACATTCCGTCCGA---------------T-T-A-C-ATTTAATTA------T-TACAT---AACCAT-----TG--CAGAAGTGTGTTTGTGTTAGCCAAACATATCTTACTTCC-AGATTCAAACGTTTCTT-CTGCACAACTTGTCAAGAGG-TTTATCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACT
gi|10 : ttgaaatgaaagcgtctggatggggggaaAATG-TGTT-T--GTATTTGT----TGA--ATCAAACAATTGGACT-GGC-C-CGGC-ATTCCCAGGG--TATTTCATCAGAC--TATCGTTT------------------ATA---TC--AT----G--TT----ATTAATGTATGCATT--G---TG-------T-TTTTA-----------------AATC--------AAGA-TA----TCAATTTGAT-TTTTGC----ATAT-A--C-A--------A-A-ATATT-TTA------C-AA--T---AACCGTGGTTGTGTTCATATTTGTGTTCGTATACGGCAATCAAATCATAATTTC-TGATTCTAACTTTTTTTTCTGCACAACAT-CCAAGACGTTTTTTCTTTTAGAATTACC-AAGCGTTGAAGATGATCA
gi|11 : aTTGC-TTTTATAAAAGATACACGTCATGAC--CGTTTGTCAAAAATATGTTTAAAAAAT-CAAATAAGATTTGATTGGCTG---------T---TTAAAAAAAACAACGACATATTTTATTTAGATTAAAGGCATTGTAAATACATTGTCTAGTATTGTGAAA-----TA--AA-ACAGGACA--TACA-AAAAGCGAAATCAAAAC-GACAG
gi|11 : ttatcttatcatgTGTTTGTTTCAACCAATCAAActatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|12 : ttatcttatcatgttgcttttataaaagatacacgtcatgaccgtttgtcaaaaatatgtttaaaaaatcaaataagatttgattggctgtttaaaaaaaacaacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggcAATG-T-CT-T--G-ACAATT----TCT--TTCAAACAATCGGACT-A-CCT-CAACGATTTCTATGG--TATTTCAACAGAC--TGTCGTTTAGagtatca
gi|12 : aAACAGACTGTCGTTTAGTCTTGATCATATGCGACACTTACTTTT-CTAAAAGAtcttgatcatatgcgacacttacttttctaaaagat
gi|12 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcTCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACTt
gi|13 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcgttt----AATCTTGATCATCTGCGATGCTTAATTC--CTTAAAGACAAATGTCTT-GAAAGGTTCCACCTGCAAAATGAAAt
gi|14 : ttTTGTCAAGACA-TTTGT-TTTCAGGA-AAGCTAAGCGCCGAGTATCATCAAGATTtcatggatta
gi|15 : aaAAACAAA-----TAAACCCG-CGATTTCTAGTCTTGGTCATTTGCAACGTTTGCTTTTTCTAACAGAataacggattatacaaattgaat
gi|16 : ATGTCTAGTCTTTATTATCTTCGACGCTTGT-TTTTCTCATAGACACACGTCTatt
gi|17 : ----AGTCTTGATAATTTGTGATACTTGCTTCTACTGAAACACAAATG
gi|18 : tTAGTCTTGATCATCTGC-ACATTCAC-TTTTCTTAAAGATAGA
gi|2 : GATTTCCATAGCGTGTGTCAGTAGAC--TATCGTTTATATGT----------TTATT---TTTTGT----A--TTT---ATTTATGT-T-TGTT--A---ATCATGTTAT-TTATT--T--GACA---A--A-CATCTTTAG-ACAAGA-TATCTCCAA---TGAC-TTTTATCGAAATAA-AATT-G-TT-T-T-A-A-TTTTTATTT------A-AACAT---AACC--------G--TGAAGGTGTGTCTGTCTCAGCCAATCAGAGCTTTCTGCC-CGATTAAAAA---TAAT-CTGCATAAAATGCTAAGACG-TGTGTCGTTTAGAA-AAGC-AAGCATAGAAGATGATCAAGAa
gi|2 : ggtgtacatgaat-T-TT-T--G-ATTGGTGGATTGA--TTCAAACGATAGGACA-ATC-T-TGGCGATTTCCATA----ATTTTAAAAAAAACTGTCG-TAAGATA-----------TTATT---TCA-GT----A--TT----CTTTTT-TA---ATT--AG--ATAG-----T-ATCTATCT--GACA---A--ATGTTTTT--G-ACAATATTAGCTGCAA---TGAC-TT-CGTCGAAATAATA--C-A-TT-T-T-T-A-ATTGTA-TA------TAAACAT---AACGGT-----TT--CGGGTGTGTGTTT-TGTCAGCCAAaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|3 : ggtgtacatgaattcttgatcatcttctatgcttgcttttctaaacgacacacgtcttagcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtAACAAG--TAAA-GAAATGGACCTTCA----GGTAGTCTGT-AGTCTTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTC-GACAAGTTCGGCC-A-AGAATAAAAT-C-AGTT-T-T---ATT--T--AGTGAAAAATCGAATAACGTT-TT-T--G-ATTGGT----TGA--AT-AAACAATCGGACT-ACC-T-CGGACATTTCCATAT--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TT----AAT----TAC-TATT--AG--ATAG-----T-TTCTA--T--GACA---A--C-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-ATTT-T-T-A-A-ATTTTATTA------T-AACAT---AAGCAT-----TG--CAGAGGTTTGTTTGTTTCAGAAAA-CAGATCTTTCATCC-AGATCCAAACATTTCAT-CTGC---AGTTGTCAAGTCG-TTTGTCTTTTAGAA-AAAC-AAGCGTCGCAAATGATCAAGACT
gi|4 : tttcgttctacagactacctAGT-----AGTCTTGATCATTTGCGACGTTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAA-T-CATTTT-T---ATC--T--AGCG-AAAATCGAATAACG-T-TTAT--G-ATTGAT----TGA--TTCA---AATCGGACT-ACC-T-CGGAGATCTCCATAG--TGATTCAAAAGCG--TAGCGTTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTGTTATAG-TATT--AG--ATA------T-TTTTG--T--GACA---A--A-GATCTT--GCACAAGA-AAACTGCCA---TGAC-TTTCGTCCGAATAA-A--T-A-TTCT-T-A-A-ATTTTATTA------T-AATAT---AACCAT-----CG--CAGAGGTGTGTTTATTTCAGCCAATCAGATCTTACTT------------CGTTTCTT-CTGCAGAACTTGTCAAAACG-TTTGTCCTTTAGAA-AATC-AAGCGTCGCATATTATCAAGACTtttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaC----AGT-TTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAG-TCAA---T-TTT-ATT--T--AGTG-AATATCG--T-----T-TT-T--G-ATTGGT----CGA--TTCAAACAACCAGACT-A-CCT-CGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TTGAATATTTTTATAT-TATT--A---GC-------TATTTTA-----GATATTTATTA-GATCTT--GTGCAATA-TAACTGCCA---TGAC-TTCCGTCCGAATAT-T--T-A-TT-T-T-A-AGATTTTATTA------T-AACAT---AAACAT-----TG--CAAAGGTGTGTTTGTTTCAGCCAATCAGATCTTTCTTCC-AAATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCGTTTAGAA-AAGC-AAGCGTCGCATAGGATCAAGACTa
gi|6 : aTTTACAATACGACAAAGTTAAACGAACTTTGTAT-AAAAC-AACA-TT----AGTCTTGATCATATGCGGCGCTTGCTTTT-GTAAAAAACAAACGTTTT-GACAGGTTTGGCC-G-AAAATAAAAA-T-CA---T-T---TTTATT--AGCG-ATAATCGAATTATG-T-TT-TT-G-ATTGGT----TTA--TTCAAACAA---GACT-A-CCT-TGGACATTTCCTTAG--TTTTCCAAAAAAA--TATCGTTTTGATGT----------TTATT---TCT-AT----A--TTCATGATTTTCATAT-TATTTGAT--AT-------T-TTCTA--T--GACA---A--A-GAC---------------AACTGCCA---TGAT-TTCCGTCCGAACAA-A--T-A-TT-T-T-TTA-ATTTTATTA------T-AACAT---AACCAT-----TG--CAGTGGTGTGTCTGTTTTAGCCAATCAGATCTCACTTCC-AGATCTACACGTTTCTT-CTGCACAACTTGTCAAGGCG-TTTGTATTTTAGAA-AAGC-AAGCGTCGCCTATGATCAAGACTgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|7 : gtgtacattgtac----AGTCTTGATCATGCGCGACACTTGCTTTT-CAAAAAAACAAATGTTTC-GACAAGCTCGGCC-G-AGGATAAATC-T-CA---T-TTTTATT--T--AACA-AAAATCAAATAACG-T-TT-T--G-ATTGGT----TGAATTTCAAA---TCGGACTTC-C-T-TGGAGGTTTCAATAG--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TTCATTATTTTTATAT-TATT--AGATAT-------T-TTCTA--T--GACA---A--A-AATCTT--GTACAAGA-AATCTTCCA---TCAC-TTCCGTCCGAATAA-A--T-A-TT-T-TTA-A-ATTTTATTA------T-TATATTATAGCCAT-----CA--CAGAGGTGTGTTTGTTTCTGCCA-TTAGATCTTATTTCC-AAATCAAAGTGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTAGTTTAGAA-AAGC-AAGCATTGCATATGATCAAGACT
gi|8 : t----AGTCTTGATCATATGCGAC--------------------AAACGTCTTTAACGAGTTCGACC-G-AGAATAAAAG-T-AA---CGT---ATT--TTCAATG-ACAATCTGATAACG-T-TT-TATG-ATTGAC----TGA--ATCAAACAATCGGACT-A-CCT-CGGAAATGTCCTTAG--TATTTCAACAGAG--TATCGGTTTGATGT----------GTATTATATAT-GT----G--TT----AGTTTTATAT-TATT--AC--ATA------T-TTCTA--T--GACA---C--A-GATCTT--GTACAAGA-TAATTGCCA---TGAC-TTCTATCCGAATAA-A--TTG-TT-T-T-A-A-ATTTTATTACATGTAT-AGCAT---AACCAT-----TG--CAGAGGTTTGTTTGTTTCAGCCAATCAGATCCTACTTCT-AGATTCAAACATTTCTT-CTGCCCAACGTGTCA----------------AGAA-AAAC-AAGCGTCGCATATGATCAAGAC
gi|9 : ct----AATCTTGATCTTCTGCAATGTTTGCTTTT-C------------ATCTT-A--------GACC-A-GGAATAAAATGT-AA---T----------------G-GTAACCTAATAAAG-T-TT-TT-G-ATTGGT----TGA--TTCAAACAATTGGACT-A-C-TTCGGAG------------TATTTTAAAAGAT--TATCATTTAGATATATCTATATATTTAGT---TAT-AT----AGTTT----ATTTACTTAT-TATA--AGATAT-------T-TTCTA--TCTGACA---A--A-CATCTT--GTTCAAGA-TAACTGCAG---TAAC-TTTGGTGGGAATAA-A--T-A-TT-CGT-A-A-ATTTTATTA------A-AACAT---ACCCAC-----TG--CAG------GTTTGTT-----------GATTTTACTTCCGAGTTTTAAATGTTTCTT-CTGCACAACTTGTCAAGATG-TTTGTCTTTTAGAA-AAGC-AAGCTTCTGATATAATCAAGACc
Alignments
lowQualScore : 22222 1 111 1 333333333 11 666666666666666 222 222 2222 1 11 1 11 11111 333333333 11 1111111111 2222 22 11111 11111111
lowQualScore : 66666 1 1 5 1 1 6 8 1 1 1 999 5 999999999 66 1 777777777777777 1 1 1 22 1 22 1 111 1 2 111 4444 7 3 0 1 33 1 0 22 1 44 0 8 55555 1 3 4 4 4 66 5 666666666 77777 1 5 0 3 3 3 22 3 7777 55 1 44 555 3 3 5555555555 666 3 7777 55 3333 0 1 3 99999 55 3 77 22222 666666 3 55 5 3 1 666 3 0 3 55 3 3 3 3 3 3 3 11111111 666 99999 55 4 11 0 4 3 00 3 3
lowQualScore : ..... . . . . . . . . . . ... . ......... .. . ............... . . . .. . .. . ... . . ... .... . . . . .. . . .. . .. . . ..... . . . . . .. . ......... ..... . . . . . . .. . .... .. . .. ... . . .......... ... . .... .. .... . . . ..... .. . .. ..... ...... . .. . . . ... . . . .. . . . . . . . ........ ... ..... .. . .. . . . .. . .
lowQualScore : 55555 0 0 5 0 0 5 0 0 0 0 555 5 000000000 55 0 555555555555555 0 0 0 00 0 00 0 000 0 5 000 0000 3 3 7 0 88 0 0 00 2 88 8 0 11111 0 6 4 4 4 00 0 444444444 88888 0 0 9 6 6 6 33 6 7777 00 0 66 666 1 7 9999999999 444 6 7777 00 2222 3 4 6 11111 00 6 33 66666 777777 6 00 6 6 5 444 6 4 6 00 6 6 6 6 6 6 6 22222222 444 11111 00 0 22 7 0 6 77 3 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA---T-TTT-ATT--T--AGCGANAA-TCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-T-----ATT--AGATA-TTTCTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-T-A-A-ATTTTATTA------T-AACAT---AACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
Reference ( family-1424 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA---T-T---ATT--T--AGCGANAA-TCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-T-----ATT--AGAT--TTTCTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-T-A-A-ATTTTATTA------T-AACAT---AACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
gi|1 : AAACAAAATCGTTATATACATTGATATTTAGTCTTGATCATCTTCGACGCTTGC-TTTTTTAAAAGACAAACATCTTAACATAGTTTG-CAGAAA---------AAAATAAAAGTTAGATTTGATTGGCCGAAACACACCTCTG--ATGTAAAGTTGTGAATTATTTTATTCTGACATAAGTCATTGCAAATA---TGTGTCATGT---AAAAACAATTAACAA-GCAAAAAA--TATA-GAAATATATATTGAAAC-GATAGTC----AGCCTTGATCATTTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACGAGTTCGACC-G-AGAATAAAAT-T-AAAA-T-A---GTT--T--AGCGATAA-TCGGATAACG-T-TT-T--G-ACTGGT----TGA--TTCAAACAATCGGAC-AT-TCGGAAATTTCCATAG--TATTTCAGAAAAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TC----ATTTATATAT-T-----AGT--A-AT--TTTCTA--T--GACA---A--A-GATTTT--GTAAAAGG-TAACTACCA---TGACATTCCGTCCGA---------------T-T-A-C-ATTTAATTA------T-TACAT---AACCAT-----TG--CAGAAGTGTGTTTGTGTTAGCCAAACATATCTTACTTCC-AGATTCAAACGTTTCTT-CTGCACAACTTGTCAAGAGG-TTTATCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACT
gi|10 : ttgaaatgaaagcgtctggatggggggaaAATG-TGTT-T--GTATTTGT----TGA--ATCAAACAATTGGACTGGCCCGGC-ATTCCCAGGG--TATTTCATCAGAC--TATCGTTT------------------ATA---TC--AT----G--TT----ATTAATGTATGC-----ATT--GTGT--TTTT-----------------A-AATC--------AAGA-TA----TCAATTTGAT-TTTTGC----ATAT-A--C-A--------A-A-ATATT-TTA------C-AA--T---AACCGTGGTTGTGTTCATATTTGTGTTCGTATACGGCAATCAAATCATAATTTC-TGATTCTAACTTTTTTTTCTGCACAACAT-CCAAGACGTTTTTTCTTTTAGAATTACC-AAGCGTTGAAGATGATCA
gi|11 : aTTGC-TTTTATAAAAGATACACGTCATGAC--CGTTTGTCAAAAATATGTTTAAAAAAT-CAAATAAGATTTGATTGGCTG-----------T-TTAAAAAAAACAACGACATATTTTATTTAGATTAAAGGCATTGTAAATACATTGTCTAGTATTGTGAAA-----TA--AA-ACAGGACA--TACA-AAAAGCGAAATCAAAAC-GACAG
gi|11 : ttatcttatcatgTGTTTGTTTCAACCAATCAAActatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|12 : ttatcttatcatgttgcttttataaaagatacacgtcatgaccgtttgtcaaaaatatgtttaaaaaatcaaataagatttgattggctgtttaaaaaaaacaacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggcAATG-T-CT-T--G-ACAATT----TCT--TTCAAACAATCGGACTACCTCAACGATTTCTATGG--TATTTCAACAGAC--TGTCGTTTAGagtatca
gi|12 : aAACAGACTGTCGTTTAGTCTTGATCATATGCGACACTTACTTTT-CTAAAAGAtcttgatcatatgcgacacttacttttctaaaagat
gi|12 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcTCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACTt
gi|13 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcgttt----AATCTTGATCATCTGCGATGCTTAATTC--CTTAAAGACAAATGTCTT-GAAAGGTTCCACCTGCAAAATGAAAt
gi|14 : ttTTGTCAAGACA-TTTGT-TTTCAGGA-AAGCTAAGCGCCGAGTATCATCAAGATTtcatggatta
gi|15 : aaAAACAAA-----TAAACCCG-CGATTTCTAGTCTTGGTCATTTGCAACGTTTGCTTTTTCTAACAGAataacggattatacaaattgaat
gi|16 : ATGTCTAGTCTTTATTATCTTCGACGCTTGT-TTTTCTCATAGACACACGTCTatt
gi|17 : ----AGTCTTGATAATTTGTGATACTTGCTTCTACTGAAACACAAATG
gi|18 : tTAGTCTTGATCATCTGC-ACATTCAC-TTTTCTTAAAGATAGA
gi|2 : GATTTCCATAGCGTGTGTCAGTAGAC--TATCGTTTATATGT----------TTATT---TTTTGT----A--TT-----TATTTATGT-TTGTTAATC--ATGT--TATTTA--TTTGACA---A--A-CATCTTTAG-ACAAGA-TATCTCCAA---TGAC-TTTTATCGAAATAA-AATT-G-TT-T-T-A-A-TTTTTATTT------A-AACAT---AACC--------G--TGAAGGTGTGTCTGTCTCAGCCAATCAGAGCTTTCTGCC-CGATTAAAAA---TAAT-CTGCATAAAATGCTAAGACG-TGTGTCGTTTAGAA-AAGC-AAGCATAGAAGATGATCAAGAa
gi|2 : ggtgtacatgaat-T-TT-T--G-ATTGGTGGATTGA--TTCAAACGATAGGACAATCTTGGCGATTTCCATA----ATTTTAAAAAAAACTGTCG-TAAGATA-----------TTATT---TCA-GT----A--TT----CTTTTT-TA--------ATT--AGATAGTATCTATCT--GACA---A--ATGTTTTT--G-ACAATATTAGCTGCAA---TGAC-TT-CGTCGAAATAATA--C-A-TT-T-T-T-A-ATTGTA-TA------TAAACAT---AACGGT-----TT--CGGGTGTGTGTTT-TGTCAGCCAAaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|3 : ggtgtacatgaattcttgatcatcttctatgcttgcttttctaaacgacacacgtcttagcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtACAAG--TAAA-GAAATGGACCTTCA----GGTAGTCTGT-AGTCTTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTC-GACAAGTTCGGCC-A-AGAATAAAAT-C-AG---T-TTT-ATT--T--AGTGAAAAATCGAATAACGTT-TT-T--G-ATTGGT----TGA--AT-AAACAATCGGACTACCTCGGACATTTCCATAT--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TT----AAT----TAC-T-----ATT--AGATAGTTTCTA--T--GACA---A--C-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-ATTT-T-T-A-A-ATTTTATTA------T-AACAT---AAGCAT-----TG--CAGAGGTTTGTTTGTTTCAGAAAA-CAGATCTTTCATCC-AGATCCAAACATTTCAT-CTGC---AGTTGTCAAGTCG-TTTGTCTTTTAGAA-AAAC-AAGCGTCGCAAATGATCAAGACT
gi|4 : tttcgttctacagactacctAGT-----AGTCTTGATCATTTGCGACGTTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAA-T-CATTTT-T---ATC--T--AGCGAAAA-TCGAATAACG-T-TTAT--G-ATTGAT----TGA--TTCA---AATCGGACTACCTCGGAGATCTCCATAG--TGATTCAAAAGCG--TAGCGTTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTGTTATAG-T-----ATT--AGATA-TTTTTG--T--GACA---A--A-GATCTT--GCACAAGA-AAACTGCCA---TGAC-TTTCGTCCGAATAA-A--T-A-TTCT-T-A-A-ATTTTATTA------T-AATAT---AACCAT-----CG--CAGAGGTGTGTTTATTTCAGCCAATCAGATCTTACTT------------CGTTTCTT-CTGCAGAACTTGTCAAAACG-TTTGTCCTTTAGAA-AATC-AAGCGTCGCATATTATCAAGACTttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaC----AGT-TTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAG-TCAA---T-TTT-ATT--T--AGTGAATA-TCG--T-----T-TT-T--G-ATTGGT----CGA--TTCAAACAACCAGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TTGAATATTTTTATAT-T-----ATT--AGCT--ATTTTA-----GATATTTATTA-GATCTT--GTGCAATA-TAACTGCCA---TGAC-TTCCGTCCGAATAT-T--T-A-TT-T-T-A-AGATTTTATTA------T-AACAT---AAACAT-----TG--CAAAGGTGTGTTTGTTTCAGCCAATCAGATCTTTCTTCC-AAATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCGTTTAGAA-AAGC-AAGCGTCGCATAGGATCAAGACTa
gi|6 : aTTTACAATACGACAAAGTTAAACGAACTTTGTAT-AAAAC-AACA-TT----AGTCTTGATCATATGCGGCGCTTGCTTTT-GTAAAAAACAAACGTTTT-GACAGGTTTGGCC-G-AAAATAAAAA-T-CA---T-T---TTTATT--AGCGATAA-TCGAATTATG-T-TT-TT-G-ATTGGT----TTA--TTCAAACAA---GACTACCTTGGACATTTCCTTAG--TTTTCCAAAAAAA--TATCGTTTTGATGT----------TTATT---TCT-AT----A--TTCATGATTTTCATAT-T-----ATTTGATAT--TTTCTA--T--GACA---A--A-GAC---------------AACTGCCA---TGAT-TTCCGTCCGAACAA-A--T-A-TT-T-T-TTA-ATTTTATTA------T-AACAT---AACCAT-----TG--CAGTGGTGTGTCTGTTTTAGCCAATCAGATCTCACTTCC-AGATCTACACGTTTCTT-CTGCACAACTTGTCAAGGCG-TTTGTATTTTAGAA-AAGC-AAGCGTCGCCTATGATCAAGACTgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|7 : gtgtacattgtac----AGTCTTGATCATGCGCGACACTTGCTTTT-CAAAAAAACAAATGTTTC-GACAAGCTCGGCC-G-AGGATAAATC-T-CA---T-TTTTATT--T--AACAAAAA-TCAAATAACG-T-TT-T--G-ATTGGT----TGAATTTCAAA---TCGGACTTCCTTGGAGGTTTCAATAG--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TTCATTATTTTTATAT-T-----ATT--AGATATTTTCTA--T--GACA---A--A-AATCTT--GTACAAGA-AATCTTCCA---TCAC-TTCCGTCCGAATAA-A--T-A-TT-T-TTA-A-ATTTTATTA------T-TATATTATAGCCAT-----CA--CAGAGGTGTGTTTGTTTCTGCCA-TTAGATCTTATTTCC-AAATCAAAGTGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTAGTTTAGAA-AAGC-AAGCATTGCATATGATCAAGACT
gi|8 : t----AGTCTTGATCATATGCGAC--------------------AAACGTCTTTAACGAGTTCGACC-G-AGAATAAAAG-T-AA---CGT---ATT--TTCAATGACAA-TCTGATAACG-T-TT-TATG-ATTGAC----TGA--ATCAAACAATCGGACTACCTCGGAAATGTCCTTAG--TATTTCAACAGAG--TATCGGTTTGATGT----------GTATTATATAT-GT----G--TT----AGTTTTATAT-T-----ATT--ACATA-TTTCTA--T--GACA---C--A-GATCTT--GTACAAGA-TAATTGCCA---TGAC-TTCTATCCGAATAA-A--TTG-TT-T-T-A-A-ATTTTATTACATGTAT-AGCAT---AACCAT-----TG--CAGAGGTTTGTTTGTTTCAGCCAATCAGATCCTACTTCT-AGATTCAAACATTTCTT-CTGCCCAACGTGTCA----------------AGAA-AAAC-AAGCGTCGCATATGATCAAGAC
gi|9 : ct----AATCTTGATCTTCTGCAATGTTTGCTTTT-C------------ATCTT-A--------GACC-A-GGAATAAAATGT-AA---T----------------GGTAA-CCTAATAAAG-T-TT-TT-G-ATTGGT----TGA--TTCAAACAATTGGACTACTTCGGAG------------TATTTTAAAAGAT--TATCATTTAGATATATCTATATATTTAGT---TAT-AT----AGTTT----ATTTACTTAT-T-----ATA--AGATATTTTCTA--TCTGACA---A--A-CATCTT--GTTCAAGA-TAACTGCAG---TAAC-TTTGGTGGGAATAA-A--T-A-TT-CGT-A-A-ATTTTATTA------A-AACAT---ACCCAC-----TG--CAG------GTTTGTT-----------GATTTTACTTCCGAGTTTTAAATGTTTCTT-CTGCACAACTTGTCAAGATG-TTTGTCTTTTAGAA-AAGC-AAGCTTCTGATATAATCAAGACc
Alignments
lowQualScore : 22222 1 111 1 333333333 11 666666666666666 222 222 2222 1 11 1 11 11111 1 11 1111111111 1111 1111 111111 11111111
lowQualScore : 66666 1 1 5 1 1 6 8 1 1 1 999 5 999999999 66 1 777777777777777 1 1 1 22 1 22 1 111 1 2 111 4444 7 3 0 1 33 1 0 22 1 44 0 8 55555 1 3 4 4 4 66 5 0 3 3 66 5 1 0 3 3 3 22 3 7777 55 1 44 555 3 3 5555555555 666 3 5555 55 9999 2 2 3 000000 7 3 7 99999 666666 3 55 5 3 1 666 3 0 3 777777 3 3 3 3 666 11111111 99999 55 4 11 0 4 3 00 3 3
lowQualScore : ..... . . . . . . . . . . ... . ......... .. . ............... . . . .. . .. . ... . . ... .... . . . . .. . . .. . .. . . ..... . . . . . .. . . . . .. . . . . . . .. . .... .. . .. ... . . .......... ... . .... .. .... . . . ...... . . . ..... ...... . .. . . . ... . . . ...... . . . . ... ........ ..... .. . .. . . . .. . .
lowQualScore : 55555 0 0 5 0 0 5 0 0 0 0 555 5 000000000 55 0 555555555555555 0 0 0 00 0 00 0 000 0 5 000 0000 3 3 7 0 88 0 0 00 2 88 8 0 11111 0 6 4 4 4 00 0 0 4 4 99 0 0 9 6 6 6 33 6 7777 00 0 66 666 1 7 9999999999 444 6 5555 00 1111 6 7 6 555555 3 6 3 99999 777777 6 00 6 6 5 444 6 4 6 777777 6 6 6 6 444 22222222 11111 00 0 22 7 0 6 77 3 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTA-----GATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
Reference ( family-1424 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTA-----GATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
gi|1 : AAACAAAATCGTTATATACATTGATATTTAGTCTTGATCATCTTCGACGCTTGC-TTTTTTAAAAGACAAACATCTTAACATAGTTTG-CAGAAA---------AAAATAAAAGTTAGATTTGATTGGCCGAAACACACCTCTG--ATGTAAAGTTGTGAATTATTTTATTCTGACATAAGTCATTGCAAATA---TGTGTCATGT---AAAAACAATTAACAA-GCAAAAAA--TATA-GAAATATATATTGAAAC-GATAGTC----AGCCTTGATCATTTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACGAGTTCGACC-G-AGAATAAAAT-T-AA-AATAGTTT--AGCG-ATAATCGGATAACG-T-TT-T--G-ACTGGT----TGA--TTCAAACAATCGGAC-A-TTCGGAAATTTCCATAG--TATTTCAGAAAAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TC----ATTTATATAT-TAGTA------AT--TT-T-CTA--T--GACA---A--A-GATTTT--GTAAAAGG-TAACTACCA---TGACATTCCGTCCGA---------------T-TA-C-ATT---TAATTA------T-TACATAACCAT-----TG--CAGAAGTGTGTTTGTGTTAGCCAAACATATCTTACTTCC-AGATTCAAACGTTTCTT-CTGCACAACTTGTCAAGAGG-TTTATCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACT
gi|10 : ttgaaatgaaagcgtctggatggggggaaAATG-TGTT-T--GTATTTGT----TGA--ATCAAACAATTGGACTGGCCCGGC-ATTCCCAGGG--TATTTCATCAGAC--TATCGTTT------------------ATA---TC--AT----G--TT----ATTAATGTATGCATTG-------TG-TT-T-TTA-----------------AATC--------AAGA-TA----TCAATTTGAT-TTTTGC----ATAT-A--C-A-------A-A-ATA---TT-TTA------C-AA--TAACCGTGGTTGTGTTCATATTTGTGTTCGTATACGGCAATCAAATCATAATTTC-TGATTCTAACTTTTTTTTCTGCACAACAT-CCAAGACGTTTTTTCTTTTAGAATTACC-AAGCGTTGAAGATGATCA
gi|11 : aTTGC-TTTTATAAAAGATACACGTCATGAC--CGTTTGTCAAAAATATGTTTAAAAAAT-CAAATAAGATTTGATTGGCTG---------T---TTAAAAAAAACAACGACATATTTTATTTAGATTAAAGGCATTGTAAATACATTGTCTAGTATTGTGAAA-----TA--AA-ACAGGACA--TACA-AAAAGCGAAATCAAAAC-GACAG
gi|11 : ttatcttatcatgTGTTTGTTTCAACCAATCAAActatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|12 : ttatcttatcatgttgcttttataaaagatacacgtcatgaccgtttgtcaaaaatatgtttaaaaaatcaaataagatttgattggctgtttaaaaaaaacaacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggcAATG-T-CT-T--G-ACAATT----TCT--TTCAAACAATCGGACTACCTCAACGATTTCTATGG--TATTTCAACAGAC--TGTCGTTTAGagtatca
gi|12 : aAACAGACTGTCGTTTAGTCTTGATCATATGCGACACTTACTTTT-CTAAAAGAtcttgatcatatgcgacacttacttttctaaaagat
gi|12 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcTCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACTt
gi|13 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcgttt----AATCTTGATCATCTGCGATGCTTAATTC--CTTAAAGACAAATGTCTT-GAAAGGTTCCACCTGCAAAATGAAAt
gi|14 : ttTTGTCAAGACA-TTTGT-TTTCAGGA-AAGCTAAGCGCCGAGTATCATCAAGATTtcatggatta
gi|15 : aaAAACAAA-----TAAACCCG-CGATTTCTAGTCTTGGTCATTTGCAACGTTTGCTTTTTCTAACAGAataacggattatacaaattgaat
gi|16 : ATGTCTAGTCTTTATTATCTTCGACGCTTGT-TTTTCTCATAGACACACGTCTatt
gi|17 : ----AGTCTTGATAATTTGTGATACTTGCTTCTACTGAAACACAAATG
gi|18 : tTAGTCTTGATCATCTGC-ACATTCAC-TTTTCTTAAAGATAGA
gi|2 : GATTTCCATAGCGTGTGTCAGTAGAC--TATCGTTTATATGT----------TTATT---TTTTGT----A--TTT---ATTTATGT-T-TGTTAATCATGTTA-TT-T-ATT--T--GACA---A--A-CATCTTTAG-ACAAGA-TATCTCCAA---TGAC-TTTTATCGAAATAA-AATT-G-TT-T-TA-A-TTT---TTATTT------A-AACATAACC--------G--TGAAGGTGTGTCTGTCTCAGCCAATCAGAGCTTTCTGCC-CGATTAAAAA---TAAT-CTGCATAAAATGCTAAGACG-TGTGTCGTTTAGAA-AAGC-AAGCATAGAAGATGATCAAGAa
gi|2 : ggtgtacatgaat-T-TT-T--G-ATTGGTGGATTGA--TTCAAACGATAGGACAATCTTGGCGATTTCCATA----ATTTTAAAAAAAACTGTCG-TAAGATA-----------TTATT---TCA-GT----A--TT----CTTTTT-TA---ATTA-----GATA-GTAT-CTATCT--GACA---A--ATGTTTTT--G-ACAATATTAGCTGCAA---TGAC-TT-CGTCGAAATAATA--C-A-TT-T-TT-A-ATT---GTA-TA------TAAACATAACGGT-----TT--CGGGTGTGTGTTT-TGTCAGCCAAaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|3 : ggtgtacatgaattcttgatcatcttctatgcttgcttttctaaacgacacacgtcttagcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtACAAG--TAAA-GAAATGGACCTTCA----GGTAGTCTGT-AGTCTTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTC-GACAAGTTCGGCC-A-AGAATAAAAT-C-AG-TTTTATTT--AGTGAAAAATCGAATAACGTT-TT-T--G-ATTGGT----TGA--AT-AAACAATCGGACTACCTCGGACATTTCCATAT--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TT----AAT----TAC-TATTA-----GATAGTT-T-CTA--T--GACA---A--C-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-ATTT-T-TA-A-ATT---TTATTA------T-AACATAAGCAT-----TG--CAGAGGTTTGTTTGTTTCAGAAAA-CAGATCTTTCATCC-AGATCCAAACATTTCAT-CTGC---AGTTGTCAAGTCG-TTTGTCTTTTAGAA-AAAC-AAGCGTCGCAAATGATCAAGACT
gi|4 : tttcgttctacagactacctAGT-----AGTCTTGATCATTTGCGACGTTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAA-T-CATTTTTATCT--AGCG-AAAATCGAATAACG-T-TTAT--G-ATTGAT----TGA--TTCA---AATCGGACTACCTCGGAGATCTCCATAG--TGATTCAAAAGCG--TAGCGTTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTGTTATAG-TATTA-----GATA-TT-T-TTG--T--GACA---A--A-GATCTT--GCACAAGA-AAACTGCCA---TGAC-TTTCGTCCGAATAA-A--T-A-TTCT-TA-A-ATT---TTATTA------T-AATATAACCAT-----CG--CAGAGGTGTGTTTATTTCAGCCAATCAGATCTTACTT------------CGTTTCTT-CTGCAGAACTTGTCAAAACG-TTTGTCCTTTAGAA-AATC-AAGCGTCGCATATTATCAAGACTttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaC----AGT-TTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAG-TCAA-TTTTATTT--AGTG-AATATCG--T-----T-TT-T--G-ATTGGT----CGA--TTCAAACAACCAGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TTGAATATTTTTATAT-TATTA-----GCTA-TT-T--TA-----GATATTTATTA-GATCTT--GTGCAATA-TAACTGCCA---TGAC-TTCCGTCCGAATAT-T--T-A-TT-T-TA-AGATT---TTATTA------T-AACATAAACAT-----TG--CAAAGGTGTGTTTGTTTCAGCCAATCAGATCTTTCTTCC-AAATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCGTTTAGAA-AAGC-AAGCGTCGCATAGGATCAAGACTa
gi|6 : aTTTACAATACGACAAAGTTAAACGAACTTTGTAT-AAAAC-AACA-TT----AGTCTTGATCATATGCGGCGCTTGCTTTT-GTAAAAAACAAACGTTTT-GACAGGTTTGGCC-G-AAAATAAAAA-T-CA-TTTTTATT--AGCG-ATAATCGAATTATG-T-TT-TT-G-ATTGGT----TTA--TTCAAACAA---GACTACCTTGGACATTTCCTTAG--TTTTCCAAAAAAA--TATCGTTTTGATGT----------TTATT---TCT-AT----A--TTCATGATTTTCATAT-TATTT-----GATA-TT-TTCTA--T--GACA---A--A-GAC---------------AACTGCCA---TGAT-TTCCGTCCGAACAA-A--T-A-TT-T-TTTA-ATT---TTATTA------T-AACATAACCAT-----TG--CAGTGGTGTGTCTGTTTTAGCCAATCAGATCTCACTTCC-AGATCTACACGTTTCTT-CTGCACAACTTGTCAAGGCG-TTTGTATTTTAGAA-AAGC-AAGCGTCGCCTATGATCAAGACTgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|7 : gtgtacattgtac----AGTCTTGATCATGCGCGACACTTGCTTTT-CAAAAAAACAAATGTTTC-GACAAGCTCGGCC-G-AGGATAAATC-T-CATTTTTATTT--AACA-AAAATCAAATAACG-T-TT-T--G-ATTGGT----TGAATTTCA---AATCGGACTTCCTTGGAGGTTTCAATAG--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTTTTATAT-TATTA-----GATATTT-T-CTA--T--GACA---A--A-AATCTT--GTACAAGA-AATCTTCCA---TCAC-TTCCGTCCGAATAA-A--T-ATTT-T-TA-A-ATTTTATTATTA------T-ATTATAGCCAT-----CA--CAGAGGTGTGTTTGTTTCTGCC-ATTAGATCTTATTTCC-AAATCAAAGTGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTAGTTTAGAA-AAGC-AAGCATTGCATATGATCAAGACT
gi|8 : t----AGTCTTGATCATATGCGAC--------------------AAACGTCTTTAACGAGTTCGACC-G-AGAATAAAAG-T-AA-CGT-ATTTTCAATG-ACAATCTGATAACG-T-TT-TATG-ATTGAC----TGA--ATCAAACAATCGGACTACCTCGGAAATGTCCTTAG--TATTTCAACAGAG--TATCGGTTTGATGT----------GTATTATATAT-GT----G--TT----AGTTTTATAT-TATTA-----CATA-TT-T-CTA--T--GACA---C--A-GATCTT--GTACAAGA-TAATTGCCA---TGAC-TTCTATCCGAATAA-A--TTG-TT-T-TA-A-ATT---TTATTACATGTAT-AGCATAACCAT-----TG--CAGAGGTTTGTTTGTTTCAGCCAATCAGATCCTACTTCT-AGATTCAAACATTTCTT-CTGCCCAACGTGTCA----------------AGAA-AAAC-AAGCGTCGCATATGATCAAGAC
gi|9 : ct----AATCTTGATCTTCTGCAATGTTTGCTTTT-C------------ATCTT-A--------GACC-A-GGAATAAAATGT-AA-T------------G-GTAACCTAATAAAG-T-TT-TT-G-ATTGGT----TGA--TTCAAACAATTGGACTACTTCGGAG------------TATTTTAAAAGAT--TATCATTTAGATATATCTATATATTTAGT---TAT-AT----AGTTT----ATTTACTTAT-TATAA-----GATA-TT-TTCTA--TCTGACA---A--A-CATCTT--GTTCAAGA-TAACTGCAG---TAAC-TTTGGTGGGAATAA-A--T-A-TT-CGTA-A-ATT---TTATTA------A-AACATACCCAC-----TG--CAG------GTTTGTT-----------GATTTTACTTCCGAGTTTTAAATGTTTCTT-CTGCACAACTTGTCAAGATG-TTTGTCTTTTAGAA-AAGC-AAGCTTCTGATATAATCAAGACc
Alignments
lowQualScore : 22222 1 111 1 333333333 11 666666666666666 222 222 2222 1 11 1 11 11111 1 11 1111111111 1111 1111 111111 11111111
lowQualScore : 66666 1 1 5 1 1 6 8 1 1 1 999 5 999999999 66 1 777777777777777 1 1 1 22 1 22 1 111 1 2 111 4444 7 3 0 1 33 1 0 22 1 44 0 8 55555 1 3 4 4 4 66 5 0 3 3 66 5 1 0 3 3 3 22 3 7777 55 1 44 555 3 3 5555555555 666 3 5555 55 9999 2 2 3 000000 7 3 7 99999 666666 3 55 5 3 1 666 3 0 3 777777 3 3 3 3 666 11111111 99999 55 4 11 0 4 3 00 3 3
lowQualScore : ..... . . . . . . . . . . ... . ......... .. . ............... . . . .. . .. . ... . . ... .... . . . . .. . . .. . .. . . ..... . . . . . .. . . . . .. . . . . . . .. . .... .. . .. ... . . .......... ... . .... .. .... . . . ...... . . . ..... ...... . .. . . . ... . . . ...... . . . . ... ........ ..... .. . .. . . . .. . .
lowQualScore : 55555 0 0 5 0 0 5 0 0 0 0 555 5 000000000 55 0 555555555555555 0 0 0 00 0 00 0 000 0 5 000 0000 3 3 7 0 88 0 0 00 2 88 8 0 11111 0 6 4 4 4 00 0 0 4 4 99 0 0 9 6 6 6 33 6 7777 00 0 66 666 1 7 9999999999 444 6 5555 00 1111 6 7 6 555555 3 6 3 99999 777777 6 00 6 6 5 444 6 4 6 777777 6 6 6 6 444 22222222 11111 00 0 22 7 0 6 77 3 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTA-----GATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
Reference ( family-1424 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTA-----GATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
gi|1 : AAACAAAATCGTTATATACATTGATATTTAGTCTTGATCATCTTCGACGCTTGC-TTTTTTAAAAGACAAACATCTTAACATAGTTTG-CAGAAA---------AAAATAAAAGTTAGATTTGATTGGCCGAAACACACCTCTG--ATGTAAAGTTGTGAATTATTTTATTCTGACATAAGTCATTGCAAATA---TGTGTCATGT---AAAAACAATTAACAA-GCAAAAAA--TATA-GAAATATATATTGAAAC-GATAGTC----AGCCTTGATCATTTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACGAGTTCGACC-G-AGAATAAAAT-T-AA-AATAGTTT--AGCG-ATAATCGGATAACG-T-TT-T--G-ACTGGT----TGA--TTCAAACAATCGGAC-A-TTCGGAAATTTCCATAG--TATTTCAGAAAAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TC----ATTTATATAT-TAGTA------AT--TT-T-CTA--T--GACA---A--A-GATTTT--GTAAAAGG-TAACTACCA---TGACATTCCGTCCGA---------------T-TA-C-ATT---TAATTA------T-TACATAACCAT-----TG--CAGAAGTGTGTTTGTGTTAGCCAAACATATCTTACTTCC-AGATTCAAACGTTTCTT-CTGCACAACTTGTCAAGAGG-TTTATCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACT
gi|10 : ttgaaatgaaagcgtctggatggggggaaAATG-TGTT-T--GTATTTGT----TGA--ATCAAACAATTGGACTGGCCCGGC-ATTCCCAGGG--TATTTCATCAGAC--TATCGTTT------------------ATA---TC--AT----G--TT----ATTAATGTATGCATTG-------TG-TT-T-TTA-----------------AATC--------AAGA-TA----TCAATTTGAT-TTTTGC----ATAT-A--C-A-------A-A-ATA---TT-TTA------C-AA--TAACCGTGGTTGTGTTCATATTTGTGTTCGTATACGGCAATCAAATCATAATTTC-TGATTCTAACTTTTTTTTCTGCACAACAT-CCAAGACGTTTTTTCTTTTAGAATTACC-AAGCGTTGAAGATGATCA
gi|11 : aTTGC-TTTTATAAAAGATACACGTCATGAC--CGTTTGTCAAAAATATGTTTAAAAAAT-CAAATAAGATTTGATTGGCTG---------T---TTAAAAAAAACAACGACATATTTTATTTAGATTAAAGGCATTGTAAATACATTGTCTAGTATTGTGAAA-----TA--AA-ACAGGACA--TACA-AAAAGCGAAATCAAAAC-GACAG
gi|11 : ttatcttatcatgTGTTTGTTTCAACCAATCAAActatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|12 : ttatcttatcatgttgcttttataaaagatacacgtcatgaccgtttgtcaaaaatatgtttaaaaaatcaaataagatttgattggctgtttaaaaaaaacaacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggcAATG-T-CT-T--G-ACAATT----TCT--TTCAAACAATCGGACTACCTCAACGATTTCTATGG--TATTTCAACAGAC--TGTCGTTTAGagtatca
gi|12 : aAACAGACTGTCGTTTAGTCTTGATCATATGCGACACTTACTTTT-CTAAAAGAtcttgatcatatgcgacacttacttttctaaaagat
gi|12 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcTCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACTt
gi|13 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcgttt----AATCTTGATCATCTGCGATGCTTAATTC--CTTAAAGACAAATGTCTT-GAAAGGTTCCACCTGCAAAATGAAAt
gi|14 : ttTTGTCAAGACA-TTTGT-TTTCAGGA-AAGCTAAGCGCCGAGTATCATCAAGATTtcatggatta
gi|15 : aaAAACAAA-----TAAACCCG-CGATTTCTAGTCTTGGTCATTTGCAACGTTTGCTTTTTCTAACAGAataacggattatacaaattgaat
gi|16 : ATGTCTAGTCTTTATTATCTTCGACGCTTGT-TTTTCTCATAGACACACGTCTatt
gi|17 : ----AGTCTTGATAATTTGTGATACTTGCTTCTACTGAAACACAAATG
gi|18 : tTAGTCTTGATCATCTGC-ACATTCAC-TTTTCTTAAAGATAGA
gi|2 : GATTTCCATAGCGTGTGTCAGTAGAC--TATCGTTTATATGT----------TTATT---TTTTGT----A--TTT---ATTTATGT-T-TGTTAATCATGTTA-TT-T-ATT--T--GACA---A--A-CATCTTTAG-ACAAGA-TATCTCCAA---TGAC-TTTTATCGAAATAA-AATT-G-TT-T-TA-A-TTT---TTATTT------A-AACATAACC--------G--TGAAGGTGTGTCTGTCTCAGCCAATCAGAGCTTTCTGCC-CGATTAAAAA---TAAT-CTGCATAAAATGCTAAGACG-TGTGTCGTTTAGAA-AAGC-AAGCATAGAAGATGATCAAGAa
gi|2 : ggtgtacatgaat-T-TT-T--G-ATTGGTGGATTGA--TTCAAACGATAGGACAATCTTGGCGATTTCCATA----ATTTTAAAAAAAACTGTCG-TAAGATA-----------TTATT---TCA-GT----A--TT----CTTTTT-TA---ATTA-----GATA-GTAT-CTATCT--GACA---A--ATGTTTTT--G-ACAATATTAGCTGCAA---TGAC-TT-CGTCGAAATAATA--C-A-TT-T-TT-A-ATT---GTA-TA------TAAACATAACGGT-----TT--CGGGTGTGTGTTT-TGTCAGCCAAaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|3 : ggtgtacatgaattcttgatcatcttctatgcttgcttttctaaacgacacacgtcttagcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtACAAG--TAAA-GAAATGGACCTTCA----GGTAGTCTGT-AGTCTTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTC-GACAAGTTCGGCC-A-AGAATAAAAT-C-AG-TTTTATTT--AGTGAAAAATCGAATAACGTT-TT-T--G-ATTGGT----TGA--AT-AAACAATCGGACTACCTCGGACATTTCCATAT--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TT----AAT----TAC-TATTA-----GATAGTT-T-CTA--T--GACA---A--C-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-ATTT-T-TA-A-ATT---TTATTA------T-AACATAAGCAT-----TG--CAGAGGTTTGTTTGTTTCAGAAAA-CAGATCTTTCATCC-AGATCCAAACATTTCAT-CTGC---AGTTGTCAAGTCG-TTTGTCTTTTAGAA-AAAC-AAGCGTCGCAAATGATCAAGACT
gi|4 : tttcgttctacagactacctAGT-----AGTCTTGATCATTTGCGACGTTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAA-T-CATTTTTATCT--AGCG-AAAATCGAATAACG-T-TTAT--G-ATTGAT----TGA--TTCA---AATCGGACTACCTCGGAGATCTCCATAG--TGATTCAAAAGCG--TAGCGTTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTGTTATAG-TATTA-----GATA-TT-T-TTG--T--GACA---A--A-GATCTT--GCACAAGA-AAACTGCCA---TGAC-TTTCGTCCGAATAA-A--T-A-TTCT-TA-A-ATT---TTATTA------T-AATATAACCAT-----CG--CAGAGGTGTGTTTATTTCAGCCAATCAGATCTTACTT------------CGTTTCTT-CTGCAGAACTTGTCAAAACG-TTTGTCCTTTAGAA-AATC-AAGCGTCGCATATTATCAAGACTttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaC----AGT-TTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAG-TCAA-TTTTATTT--AGTG-AATATCG--T-----T-TT-T--G-ATTGGT----CGA--TTCAAACAACCAGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TTGAATATTTTTATAT-TATTA-----GCTA-TT-T--TA-----GATATTTATTA-GATCTT--GTGCAATA-TAACTGCCA---TGAC-TTCCGTCCGAATAT-T--T-A-TT-T-TA-AGATT---TTATTA------T-AACATAAACAT-----TG--CAAAGGTGTGTTTGTTTCAGCCAATCAGATCTTTCTTCC-AAATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCGTTTAGAA-AAGC-AAGCGTCGCATAGGATCAAGACTa
gi|6 : aTTTACAATACGACAAAGTTAAACGAACTTTGTAT-AAAAC-AACA-TT----AGTCTTGATCATATGCGGCGCTTGCTTTT-GTAAAAAACAAACGTTTT-GACAGGTTTGGCC-G-AAAATAAAAA-T-CA-TTTTTATT--AGCG-ATAATCGAATTATG-T-TT-TT-G-ATTGGT----TTA--TTCAAACAA---GACTACCTTGGACATTTCCTTAG--TTTTCCAAAAAAA--TATCGTTTTGATGT----------TTATT---TCT-AT----A--TTCATGATTTTCATAT-TATTT-----GATA-TT-TTCTA--T--GACA---A--A-GAC---------------AACTGCCA---TGAT-TTCCGTCCGAACAA-A--T-A-TT-T-TTTA-ATT---TTATTA------T-AACATAACCAT-----TG--CAGTGGTGTGTCTGTTTTAGCCAATCAGATCTCACTTCC-AGATCTACACGTTTCTT-CTGCACAACTTGTCAAGGCG-TTTGTATTTTAGAA-AAGC-AAGCGTCGCCTATGATCAAGACTgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|7 : gtgtacattgtac----AGTCTTGATCATGCGCGACACTTGCTTTT-CAAAAAAACAAATGTTTC-GACAAGCTCGGCC-G-AGGATAAATC-T-CATTTTTATTT--AACA-AAAATCAAATAACG-T-TT-T--G-ATTGGT----TGAATTTCA---AATCGGACTTCCTTGGAGGTTTCAATAG--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTTTTATAT-TATTA-----GATATTT-T-CTA--T--GACA---A--A-AATCTT--GTACAAGA-AATCTTCCA---TCAC-TTCCGTCCGAATAA-A--T-ATTT-T-TA-A-ATTTTATTATTA------T-ATTATAGCCAT-----CA--CAGAGGTGTGTTTGTTTCTGCC-ATTAGATCTTATTTCC-AAATCAAAGTGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTAGTTTAGAA-AAGC-AAGCATTGCATATGATCAAGACT
gi|8 : t----AGTCTTGATCATATGCGAC--------------------AAACGTCTTTAACGAGTTCGACC-G-AGAATAAAAG-T-AA-CGT-ATTTTCAATG-ACAATCTGATAACG-T-TT-TATG-ATTGAC----TGA--ATCAAACAATCGGACTACCTCGGAAATGTCCTTAG--TATTTCAACAGAG--TATCGGTTTGATGT----------GTATTATATAT-GT----G--TT----AGTTTTATAT-TATTA-----CATA-TT-T-CTA--T--GACA---C--A-GATCTT--GTACAAGA-TAATTGCCA---TGAC-TTCTATCCGAATAA-A--TTG-TT-T-TA-A-ATT---TTATTACATGTAT-AGCATAACCAT-----TG--CAGAGGTTTGTTTGTTTCAGCCAATCAGATCCTACTTCT-AGATTCAAACATTTCTT-CTGCCCAACGTGTCA----------------AGAA-AAAC-AAGCGTCGCATATGATCAAGAC
gi|9 : ct----AATCTTGATCTTCTGCAATGTTTGCTTTT-C------------ATCTT-A--------GACC-A-GGAATAAAATGT-AA-T------------G-GTAACCTAATAAAG-T-TT-TT-G-ATTGGT----TGA--TTCAAACAATTGGACTACTTCGGAG------------TATTTTAAAAGAT--TATCATTTAGATATATCTATATATTTAGT---TAT-AT----AGTTT----ATTTACTTAT-TATAA-----GATA-TT-TTCTA--TCTGACA---A--A-CATCTT--GTTCAAGA-TAACTGCAG---TAAC-TTTGGTGGGAATAA-A--T-A-TT-CGTA-A-ATT---TTATTA------A-AACATACCCAC-----TG--CAG------GTTTGTT-----------GATTTTACTTCCGAGTTTTAAATGTTTCTT-CTGCACAACTTGTCAAGATG-TTTGTCTTTTAGAA-AAGC-AAGCTTCTGATATAATCAAGACc
blockSeqs : . A C . T G A T A A C C T TATGTTTAA C A TTT A A A CA A TA G CAT C A TGT . A T G GT C C CG A CA A CGTTT A A T T C TG C T T T TC A A T G A AT T GGAT AT G CG AAC T A ATCTATATAT ATA T ATTC GT GAAT A G G ATCATG G A T TCT TTTATT T TA T T T ATT . T ATTG C G T G TTA CATGTAT GGTTG TT G TC T T T T
blockSeqs : G T G . A C C . . C . A . GG C TC . CTGT C . . . . T . T T T . . A . . . T . . . G . C T A . . . ATTC . CATG A G . G T . T TCT A . . C . G . . . TAT . . . . . TA . . . TA . . . .
blockSeqs : G . . C T G C . A . TT T A . C T . . . . A . . T T . . A . . . T . . . G . C T A . . . . . T T A . G . . . T A . . T . A . . . TAT . . . . . C . . . CC . . . .
blockSeqs : . T A . T A . . . . G . . T T . . T . . . . . . . C . C G G . . . . . . T A . G . . . T A . . T . A . . . TTG . . . . . A . . . CC . . . .
blockSeqs : . T . . . . A . . T T . . A . . . . . . . G . G T G . . . . . . T A . G . . . T A . . T . A . . . CA . . . . . T . . . CT . . . .
blockSeqs : A . . . . C . . G . . . C . . . . . . . G . G T G . . . . . . T A . G . . . T A . . T . A . . . CA . . . . . T . . . CA . . . .
blockSeqs : A . . . . G . . . . . . T . . . . . . . C . G T T . . . . . . T A . G . . . T A . . . . T . . . TA . . . . . T . . . TC . . . .
blockSeqs : G . . . . . . . . . . . G . A G G . . . . . . T T . C . . . T C . . . . A . . . TA . . . . . T . . . TT . . . .
blockSeqs : A . . . . . . . . A . G G T . . . . . . A . . G . . . . A . . . . A . . . TA . . . . . T . . . . . . . .
blockSeqs : C . . . . . . . . G . G T A . . . . . . . . . . . . . . . . . . . . . . . TA . . . . . A . . . . .
blockSeqs : . . T . . . .
blockSeqCons : G***** TA****
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTA-----GATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTAG-----ATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-ATA----TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
Alignments
lowQualScore : 22222 1 111 1 333333333 11 666666666666666 222 222 2222 1 11 1 11 11111 1 11 1111111111 1111 1111 111111 11111111
lowQualScore : 66666 1 1 5 1 1 6 8 1 1 1 999 5 999999999 66 1 777777777777777 1 1 1 22 1 22 1 111 1 2 111 4444 7 3 0 1 33 1 0 22 1 44 0 8 55555 1 3 4 4 4 66 5 0 3 3 66 5 1 0 3 3 3 22 3 7777 55 1 44 555 3 3 5555555555 666 3 5555 55 9999 2 2 3 000000 7 3 7 99999 666666 3 55 5 3 1 666 3 0 3 777777 3 3 3 3 666 11111111 99999 55 4 11 0 4 3 00 3 3
lowQualScore : ..... . . . . . . . . . . ... . ......... .. . ............... . . . .. . .. . ... . . ... .... . . . . .. . . .. . .. . . ..... . . . . . .. . . . . .. . . . . . . .. . .... .. . .. ... . . .......... ... . .... .. .... . . . ...... . . . ..... ...... . .. . . . ... . . . ...... . . . . ... ........ ..... .. . .. . . . .. . .
lowQualScore : 55555 0 0 5 0 0 5 0 0 0 0 555 5 000000000 55 0 555555555555555 0 0 0 00 0 00 0 000 0 5 000 0000 3 3 7 0 88 0 0 00 2 88 8 0 11111 0 6 4 4 4 00 0 0 4 4 99 0 0 9 6 6 6 33 6 7777 00 0 66 666 1 7 9999999999 444 6 5555 00 1111 6 7 6 555555 3 6 3 99999 777777 6 00 6 6 5 444 6 4 6 777777 6 6 6 6 444 22222222 11111 00 0 22 7 0 6 77 3 3
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTA-----GATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
Reference ( family-1424 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACAAAATCGTTANACNCGTCGATNTCTAGTCTTGATCATCTNCGACGCTTGC-TTTTCTAAAAGACANACGTCTTGACATNGTTTGTCAGAAATATGTTTAAAAAATANAAGTNAGATTTGATTGGCCGAAACACACCTCTGTTANGNAAAGCNGCGANNTATTTTATTCNGACNNAAGNCATTGCAAATACATTGTNTCGTGTTGTGAAAACAATTAACAA-ACGANAAA--TANA-GAAATNNATATCGAAAC-GACAGTC----AGTCTTGATCATNTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAN-T-AA-TTTTATTT--AGCG-ANAATCGAATAACG-T-TT-T--G-ATTGGT----TGA--TTCAAACAATCGGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TT----ATTTTTATAT-TATTA-----GATA-TT-T-CTA--T--GACA---A--A-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-A-TT-T-TA-A-ATT---TTATTA------T-AACATAACCAT-----TG--CAGAGGTGTGTTTGTTTCAGCCAATCAGATCTTACTTCC-AGATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCTTTTAGAA-AAGC-AAGCGTCGCATATGATCAAGACT
gi|1 : AAACAAAATCGTTATATACATTGATATTTAGTCTTGATCATCTTCGACGCTTGC-TTTTTTAAAAGACAAACATCTTAACATAGTTTG-CAGAAA---------AAAATAAAAGTTAGATTTGATTGGCCGAAACACACCTCTG--ATGTAAAGTTGTGAATTATTTTATTCTGACATAAGTCATTGCAAATA---TGTGTCATGT---AAAAACAATTAACAA-GCAAAAAA--TATA-GAAATATATATTGAAAC-GATAGTC----AGCCTTGATCATTTGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACGAGTTCGACC-G-AGAATAAAAT-T-AA-AATAGTTT--AGCG-ATAATCGGATAACG-T-TT-T--G-ACTGGT----TGA--TTCAAACAATCGGAC-A-TTCGGAAATTTCCATAG--TATTTCAGAAAAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TC----ATTTATATAT-TAGTA------AT--TT-T-CTA--T--GACA---A--A-GATTTT--GTAAAAGG-TAACTACCA---TGACATTCCGTCCGA---------------T-TA-C-ATT---TAATTA------T-TACATAACCAT-----TG--CAGAAGTGTGTTTGTGTTAGCCAAACATATCTTACTTCC-AGATTCAAACGTTTCTT-CTGCACAACTTGTCAAGAGG-TTTATCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACT
gi|10 : ttgaaatgaaagcgtctggatggggggaaAATG-TGTT-T--GTATTTGT----TGA--ATCAAACAATTGGACTGGCCCGGC-ATTCCCAGGG--TATTTCATCAGAC--TATCGTTT------------------ATA---TC--AT----G--TT----ATTAATGTATGCATTG-------TG-TT-T-TTA-----------------AATC--------AAGA-TA----TCAATTTGAT-TTTTGC----ATAT-A--C-A-------A-A-ATA---TT-TTA------C-AA--TAACCGTGGTTGTGTTCATATTTGTGTTCGTATACGGCAATCAAATCATAATTTC-TGATTCTAACTTTTTTTTCTGCACAACAT-CCAAGACGTTTTTTCTTTTAGAATTACC-AAGCGTTGAAGATGATCA
gi|11 : aTTGC-TTTTATAAAAGATACACGTCATGAC--CGTTTGTCAAAAATATGTTTAAAAAAT-CAAATAAGATTTGATTGGCTG---------T---TTAAAAAAAACAACGACATATTTTATTTAGATTAAAGGCATTGTAAATACATTGTCTAGTATTGTGAAA-----TA--AA-ACAGGACA--TACA-AAAAGCGAAATCAAAAC-GACAG
gi|11 : ttatcttatcatgTGTTTGTTTCAACCAATCAAActatgtaggcacgtaaggaaaacgcccggctgtttgtttcaaccaatcaaaagtatca
gi|12 : ttatcttatcatgttgcttttataaaagatacacgtcatgaccgtttgtcaaaaatatgtttaaaaaatcaaataagatttgattggctgtttaaaaaaaacaacgacatattttatttagattaaaggcattgtaaatacattgtctagtattgtgaaataaaacaggacatacaaaaagcgaaatcaaaacgacagctatgtaggcacgtaaggaaaacgcccggcAATG-T-CT-T--G-ACAATT----TCT--TTCAAACAATCGGACTACCTCAACGATTTCTATGG--TATTTCAACAGAC--TGTCGTTTAGagtatca
gi|12 : aAACAGACTGTCGTTTAGTCTTGATCATATGCGACACTTACTTTT-CTAAAAGAtcttgatcatatgcgacacttacttttctaaaagat
gi|12 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcTCTTTTAGAA-AAGT-AAGTGTCGCATATGATCAAGACTt
gi|13 : aaatgtcttgacaatttctttcaaacaatcggactacctcaacgatttctatggtatttcaacagactgtcgttt----AATCTTGATCATCTGCGATGCTTAATTC--CTTAAAGACAAATGTCTT-GAAAGGTTCCACCTGCAAAATGAAAt
gi|14 : ttTTGTCAAGACA-TTTGT-TTTCAGGA-AAGCTAAGCGCCGAGTATCATCAAGATTtcatggatta
gi|15 : aaAAACAAA-----TAAACCCG-CGATTTCTAGTCTTGGTCATTTGCAACGTTTGCTTTTTCTAACAGAataacggattatacaaattgaat
gi|16 : ATGTCTAGTCTTTATTATCTTCGACGCTTGT-TTTTCTCATAGACACACGTCTatt
gi|17 : ----AGTCTTGATAATTTGTGATACTTGCTTCTACTGAAACACAAATG
gi|18 : tTAGTCTTGATCATCTGC-ACATTCAC-TTTTCTTAAAGATAGA
gi|2 : GATTTCCATAGCGTGTGTCAGTAGAC--TATCGTTTATATGT----------TTATT---TTTTGT----A--TTT---ATTTATGT-T-TGTTAATCATGTTA-TT-T-ATT--T--GACA---A--A-CATCTTTAG-ACAAGA-TATCTCCAA---TGAC-TTTTATCGAAATAA-AATT-G-TT-T-TA-A-TTT---TTATTT------A-AACATAACC--------G--TGAAGGTGTGTCTGTCTCAGCCAATCAGAGCTTTCTGCC-CGATTAAAAA---TAAT-CTGCATAAAATGCTAAGACG-TGTGTCGTTTAGAA-AAGC-AAGCATAGAAGATGATCAAGAa
gi|2 : ggtgtacatgaat-T-TT-T--G-ATTGGTGGATTGA--TTCAAACGATAGGACAATCTTGGCGATTTCCATA----ATTTTAAAAAAAACTGTCG-TAAGATA-----------TTATT---TCA-GT----A--TT----CTTTTT-TA---ATTA-----GATA-GTAT-CTATCT--GACA---A--ATGTTTTT--G-ACAATATTAGCTGCAA---TGAC-TT-CGTCGAAATAATA--C-A-TT-T-TT-A-ATT---GTA-TA------TAAACATAACGGT-----TT--CGGGTGTGTGTTT-TGTCAGCCAAaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtttttgattggtggattgattcaaacgataggacaatcttggcgatttccataattttaaaaaaaactgtcgtaagatattatttcagtattcttttttaattagatagtatctatctgacaaatgtttttgacaatattagctgcaatgacttcgtcgaaataatacatttttaattgtatataaacataacggtttcgggtgtgtgttttgtcagccaa
gi|3 : ggtgtacatgaattcttgatcatcttctatgcttgcttttctaaacgacacacgtcttagcattttatgcagattatttttaatcgggcagaaagctctgattggctgagacagacacaccttcacggttatgtttaaataaaaattaaaacaattttatttcgataaaagtcattggagatatcttgtctaaagatgtttgtcaaataaataacatgattaacaaacataaataaatacaaaaaataaacatataaacgatagtctactgacacacgctatggaaatcaaccaatcagaaacttttatcagtataccgtttcggggttctgcttaagtACAAG--TAAA-GAAATGGACCTTCA----GGTAGTCTGT-AGTCTTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTC-GACAAGTTCGGCC-A-AGAATAAAAT-C-AG-TTTTATTT--AGTGAAAAATCGAATAACGTT-TT-T--G-ATTGGT----TGA--AT-AAACAATCGGACTACCTCGGACATTTCCATAT--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-AT----A--TT----AAT----TAC-TATTA-----GATAGTT-T-CTA--T--GACA---A--C-GATCTT--GTACAAGA-TAACTGCCA---TGAC-TTCCGTCCGAATAA-A--T-ATTT-T-TA-A-ATT---TTATTA------T-AACATAAGCAT-----TG--CAGAGGTTTGTTTGTTTCAGAAAA-CAGATCTTTCATCC-AGATCCAAACATTTCAT-CTGC---AGTTGTCAAGTCG-TTTGTCTTTTAGAA-AAAC-AAGCGTCGCAAATGATCAAGACT
gi|4 : tttcgttctacagactacctAGT-----AGTCTTGATCATTTGCGACGTTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAA-T-CATTTTTATCT--AGCG-AAAATCGAATAACG-T-TTAT--G-ATTGAT----TGA--TTCA---AATCGGACTACCTCGGAGATCTCCATAG--TGATTCAAAAGCG--TAGCGTTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTGTTATAG-TATTA-----GATA-TT-T-TTG--T--GACA---A--A-GATCTT--GCACAAGA-AAACTGCCA---TGAC-TTTCGTCCGAATAA-A--T-A-TTCT-TA-A-ATT---TTATTA------T-AATATAACCAT-----CG--CAGAGGTGTGTTTATTTCAGCCAATCAGATCTTACTT------------CGTTTCTT-CTGCAGAACTTGTCAAAACG-TTTGTCCTTTAGAA-AATC-AAGCGTCGCATATTATCAAGACTttttcaaccaatcagaatcctcgtctcaatggcggtagatgacatacac
gi|5 : tagttcacatcaaacaaatcaattgaatagtacgatagtcgctcacgtgccaggtcaattagtaatagttagtgttcattaC----AGT-TTGATCATATGCGACGCTTGCTTTT-CTAAAAGACAAACGTCTT-GACAAGTTCGGCC-G-AGAATAAAAG-TCAA-TTTTATTT--AGTG-AATATCG--T-----T-TT-T--G-ATTGGT----CGA--TTCAAACAACCAGACTACCTCGGAGATTTCCATAG--TATTTCAAAAGAG--TATCGTTTGGATGT----------TTATT---TCT-AT----A--TTGAATATTTTTATAT-TATTA-----GCTA-TT-T--TA-----GATATTTATTA-GATCTT--GTGCAATA-TAACTGCCA---TGAC-TTCCGTCCGAATAT-T--T-A-TT-T-TA-AGATT---TTATTA------T-AACATAAACAT-----TG--CAAAGGTGTGTTTGTTTCAGCCAATCAGATCTTTCTTCC-AAATCCAAACGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTCGTTTAGAA-AAGC-AAGCGTCGCATAGGATCAAGACTa
gi|6 : aTTTACAATACGACAAAGTTAAACGAACTTTGTAT-AAAAC-AACA-TT----AGTCTTGATCATATGCGGCGCTTGCTTTT-GTAAAAAACAAACGTTTT-GACAGGTTTGGCC-G-AAAATAAAAA-T-CA-TTTTTATT--AGCG-ATAATCGAATTATG-T-TT-TT-G-ATTGGT----TTA--TTCAAACAA---GACTACCTTGGACATTTCCTTAG--TTTTCCAAAAAAA--TATCGTTTTGATGT----------TTATT---TCT-AT----A--TTCATGATTTTCATAT-TATTT-----GATA-TT-TTCTA--T--GACA---A--A-GAC---------------AACTGCCA---TGAT-TTCCGTCCGAACAA-A--T-A-TT-T-TTTA-ATT---TTATTA------T-AACATAACCAT-----TG--CAGTGGTGTGTCTGTTTTAGCCAATCAGATCTCACTTCC-AGATCTACACGTTTCTT-CTGCACAACTTGTCAAGGCG-TTTGTATTTTAGAA-AAGC-AAGCGTCGCCTATGATCAAGACTgacagataaacaaatattacctttgtgatatagtagtatacattgtatatgtttctgatgcatgcacta
gi|7 : gtgtacattgtac----AGTCTTGATCATGCGCGACACTTGCTTTT-CAAAAAAACAAATGTTTC-GACAAGCTCGGCC-G-AGGATAAATC-T-CATTTTTATTT--AACA-AAAATCAAATAACG-T-TT-T--G-ATTGGT----TGAATTTCA---AATCGGACTTCCTTGGAGGTTTCAATAG--TATTTCAAAAGAG--TATCGGTTGGATGT----------TTATT---TCT-ATATTCA--TT----ATTTTTATAT-TATTA-----GATATTT-T-CTA--T--GACA---A--A-AATCTT--GTACAAGA-AATCTTCCA---TCAC-TTCCGTCCGAATAA-A--T-ATTT-T-TA-A-ATTTTATTATTA------T-ATTATAGCCAT-----CA--CAGAGGTGTGTTTGTTTCTGCC-ATTAGATCTTATTTCC-AAATCAAAGTGTTTCTT-CTGCACAACTTGTCAAGACG-TTTGTAGTTTAGAA-AAGC-AAGCATTGCATATGATCAAGACT
gi|8 : t----AGTCTTGATCATATGCGAC--------------------AAACGTCTTTAACGAGTTCGACC-G-AGAATAAAAG-T-AA-CGT-ATTTTCAATG-ACAATCTGATAACG-T-TT-TATG-ATTGAC----TGA--ATCAAACAATCGGACTACCTCGGAAATGTCCTTAG--TATTTCAACAGAG--TATCGGTTTGATGT----------GTATTATATAT-GT----G--TT----AGTTTTATAT-TATTA-----CATA-TT-T-CTA--T--GACA---C--A-GATCTT--GTACAAGA-TAATTGCCA---TGAC-TTCTATCCGAATAA-A--TTG-TT-T-TA-A-ATT---TTATTACATGTAT-AGCATAACCAT-----TG--CAGAGGTTTGTTTGTTTCAGCCAATCAGATCCTACTTCT-AGATTCAAACATTTCTT-CTGCCCAACGTGTCA----------------AGAA-AAAC-AAGCGTCGCATATGATCAAGAC
gi|9 : ct----AATCTTGATCTTCTGCAATGTTTGCTTTT-C------------ATCTT-A--------GACC-A-GGAATAAAATGT-AA-T------------G-GTAACCTAATAAAG-T-TT-TT-G-ATTGGT----TGA--TTCAAACAATTGGACTACTTCGGAG------------TATTTTAAAAGAT--TATCATTTAGATATATCTATATATTTAGT---TAT-AT----AGTTT----ATTTACTTAT-TATAA-----GATA-TT-TTCTA--TCTGACA---A--A-CATCTT--GTTCAAGA-TAACTGCAG---TAAC-TTTGGTGGGAATAA-A--T-A-TT-CGTA-A-ATT---TTATTA------A-AACATACCCAC-----TG--CAG------GTTTGTT-----------GATTTTACTTCCGAGTTTTAAATGTTTCTT-CTGCACAACTTGTCAAGATG-TTTGTCTTTTAGAA-AAGC-AAGCTTCTGATATAATCAAGACc