lowQualScore : 2222 1111111 1 1 1 111111 11111 11 1 1 1111 1 1
lowQualScore : 0000 1111111 3 777 4 0 22 3 44 6 5 5 3 0 44 0 2 2 777 2 88 3 7 444444 5 6 6 2 44444 88 5 5 5 5 7 3 7 7777 5 3 0
lowQualScore : .... ....... . ... . . .. . .. . . . . . .. . . . ... . .. . . ...... . . . . ..... .. . . . . . . . .... . . .
lowQualScore : 2222 8888888 7 000 1 1 33 6 77 6 0 0 4 1 55 2 7 2 888 9 88 9 0 444444 7 6 0 1 33333 44 7 7 7 7 0 0 0 2222 0 8 0
consensus : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCT-CTGCACTA-CCAAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAANAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAACGCA-TTTT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
Reference ( gi|4 ) : GGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCT-CTGCACTA-TCAATATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACATTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAATTTCACAATTCAAACA------TGACAATG-CTGTCAAAGTGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TTTT-T-AAAGAAGAAGATATGAGGATAATTTAAAATTGCCATTATGAGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATG
gi|5 : GGTGTAAG-CCCACCATT--------------ATTCTATA-------GTAAATGATAAAT---GTTTAAAGACTTGTCATTCATAGATCGATCCAAATGAAAGAAGCGAAACTTACATTTTACTGTTTGTCAATCT-CTACACTA-CTAAAATATGATGACAAAA-GTAAAGGGTCATGTGTCATATAAGA--TTTTTTTTCTGCTCAGTGTGTAAACTGTTGACAAAGTAAAAGTAGACTTCCGAAATCATGT---ATTCATACCCAAATTTCAAACCATTAATTTTGTTTTCTAAATCAACAATTCAAACA------TGACAATG-CTGTCAAAATGTTCAAAATACATTCATAATGC-----CATTTAAAT--AAAAAAA-TGAGGATTGGAATAAGGAAAATGCA--TTT-T-AAAGACGAATAAACAAGGATTATTTATAACCGCCGTTATGCGACTACACCGCGGAAGCACTTCCGTTTTCCAATGATGGTACTATG
gi|3 : aGGTGTAACGCCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAC---GTTTGAAGGTTTGTCATTCATAGACAGACCGAAATGAGTGAAGTGAAACTTACAATTTACTGTTTGTCAACCT-CTGCACTACTAAAAATATGATGAGAAAA-GTAG-GGGTCATGTTTCATGTAAGAGA-TTTTTTCCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAAACAAGT---ATTCATACCCCAATTTCCAAGCATC-ATTTTTTTTTCTAAATTCCCAATTCAAACA------TGACGATG-CTTTCAAAATGTTCAAAATACATCAATAATGA-----CATTCAAAT---AAAAAA-TGAGCATTAAAATAAGGAAAACGCATTTTT-T-AAAGAAGAAGAacaat
gi|1 : aataggaataatggtgtccgtagctgtccaggtatgtcttgtaGGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCT-CTGCACTA-TCAAAATATGATGAAAAAA-GTCG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCTAGCATaacagaaatatgcgactatctttccattttccaatgccttatacaatatacgata
gi|14 : tataaggagactttttttttaatttcataattacctcttttttactaagtactatcaatttgaaggaatattgccaagttgcaggcattaaatactgaaacttttgtcaaaatacaactttttacatggtcattatatacaggcgcgagatgttgaccgacatgcaattttgatgtgtgtgactaattttaccaaataaaattttttttttacctaattccattaaaatatttgcaccaaaatagtctcatgatacactgaaaacattatcttaccaaaatacattattcaatacaatgtacatgctaaaaattgcacatttttatcatccaaaataaaaaatcttcaaaaatttgtgatttttcatgaaatttcaatgtagatatgcacatatatgctttatttgaggcataaacttgccaaaatgatgttttttttatgaagcaaatgcctccaatttgtcatttaagactatgagagtgtaaaaaagaagttattttacctacaattaacattttggaaaatcacccccatttcactcaagtctctcttataGGTGT-ATACCCACCATTGATTTTTGTTCTTGATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTAATCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTAACATTTTACTGTTTGTCAACCT-CTACACTA-TCAAAAT
gi|11 : ataatttagtcagcttatagctgacgtcattatgaaagtcagcgttttaGGTGTAAA-CCGACTATTACTTTGTATTCTTTATGTTATA-------GTAAATAA-AGAA---GTGTGCATGCTTGTCATTCACAGAGAGACCCAAATGGAAGAAGTGAAACTTAAATTTTATTAATTGTCAACCT-TTGCACTA-CCAAAATATGATGAGAAAA-GTAG-GG--TATGT
gi|13 : ataaaatatgtcagagatggtaacgcttacGGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAacactgttgacaaatagaaagtagacttccgaaatcatgtataattcatatcccagctttcaagcatcatttttgctaaatgcacaattcaaacatgaacatctttctaaat
gi|12 : gactcatgcatattcattacaaatagcctctataGGTGTAAA-CCCACCGTTAAATTTTGTTCTTTATTATATACAATGAAGTAAATAAAAGAA---GTGTGCATGTTAATCATTCATTGAAGGACCCACATGTATGAAGTAAAGCTAACAGTTTATTGTTTGTCAACCT-CAACACTA-CCAAAATAAGATAAGAAAA-GTAG-TGTTCA-GTGTnnnnnnnnnngagcattaaaaataggaaaatgcatttttaaagaagaagaattgaggattatttacaaccgccattatgcgactaccccacggaagcacttcctttttgcaatggtggcactatgcctataccaatgtatattcatgcgccttaaagtcaatctattgcaaaaacgcaa
gi|7 : tcaaacacaacgtcgagacataattgcatgttaatatgccgttgattaatcaaataaagccttataaagtataaggtgaatcacattaatTGTAAT-CT-ACAATTGATGTTTGTTCTTTATTCTATT-------GTAAATAAAAAAAAATGTTTAACTGTTTGT---------------TCAATTGAAAGAAATTAAACTTACATTTTATTGTTTGTCAACCT-CTGCCCTA-ACAAAATATGAAGGGAAAA-GTAG-GGGTCATGTTTCATCGAAGAGATTTTT----TGTTCAGTGTGTACACTGTTGACAAAGTGATAGTAGACCTCAGAA----------ATTCATACACCAATTTCAAAGCGTC-ATTTGTTTTCCTAAATTCGCAAT----ACA--------------------AAAATGTTCAAAATACATAAAAAATGCATATACATTTAAAT-
gi|2 : ttttacaaacaattcaattcacccctatatacaCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAATGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGAAACCTACATTTGACTATTTGTCAATCT-CTGCACTA-TCAAAATATTATGAGAAAAAGTAG-GAGTCATGTGTCATAAAAGAGAATTTCTTTCTGCTAAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTAATACCCTAATTTCCAAGTATAATTTTTTTTTTCTAAATTCATAATTCAAACA------TGACAATG-CTATGAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA--GAGCATCAAAATAAGGAAAATGCA-TTTT-T-AAAGAAGAAAAAACGAGGATTATTTATAACTGCCATTATGCGACTACCCC-TGGAAGCACTTCCTTTTTCCAGTCGTGGTACTATGcttgaattttttattagaccaacccttaccgaaattcctatatccgcatatcaacaatacatgcat
gi|16 : ttcaaccatccaaaataaaaaatcttcaaaattttgtgattttgcatgaaatttcaatgtaaatatgcatattatatgctttacttgccaaaacgtgtttttttatgaaggaaatgtctccaatataccatttaagaatatgagagtttaaaaagagtttattttaccgacaaattttacattttggaaaatcacccccatcttactcaagtctctcttaaTTATTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAAGC--GTCATTCACAGAGACACCCAAATGAAATAAGTG-AGCC----TTTTATT----------CTACTGCACTA-CCAAGATATcctaatacacagatattacagggaaccacagtgcatagtgaacatttattacaaggaactgcggtgcacattgttaatcta
gi|18 : TTTTGTTCTTTATTTTATA-------GTAAATATAAAAA---GTTTGCATGTTTGT-ATT
gi|20 : CTTACAGTTCACTGTTTGTCAACCT-CTGCACTA-
gi|6 : ATTTTACTGTTTGTCAACCT-CTGCACTA-CCAAGATTTGATGGGAA---GTAA-GGGTGATGTGTCATATAAGAGATTTT--TTCTGCTCAGGTTGTATATTGTTGACAAAGTGAAAGAAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTGTTTTTCTAAATTCACAAATGAAACA------TGACAATG-CTTTCAAAATGTTAAAAATACAACAAAAATGA-----CATTCAAATAAAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TTTTAT-AGA-AAAAAGAAACAAGGATTATTTATTAATGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGATGGTACTACG
gi|10 : GTCATGTTTCATCCAAGAGAGTATTTT---G---GGTGTGCGTGTTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTCATACCCAAATTTCCAAACATCGTTAATTTTTCCAAAATGTGCAATTTAAACA------TGACAATGATTTTCAAAATGTTCCAAATACACCAATAAATC-----CATTCAAGT--CACCAAA-TAAGCAATGAGGTAAGGAAAACGGA-TTTC-T-cctttaatggtagatcgagcactaaaaaagaaaatagataaataacttattttaacaaaaaataaaaaaaatatatgatga
gi|19 : ttatagaaagacccatcatcaaagaaggaaaaattgtttgttgacaaagctcgtTATATTAGATGTTTTTT--GTCCAGTGTGTACACTGTTGACAAtttaataataataaacaaggggtagtatgcgtctgtccaaggaaacact
gi|11 : GTATGTACACTGTTGACAAATAGAAAGTAGACTTCCGAAATCATGTATAATTCATATCCCAGCTTTCAAGCATCA----TTTTTGCTAAATGCACAATTCAAACA------TGA
gi|8 : ataaaatatgtcagagatggtaacgcttacggtgtaaaccgactattactttgtattctttatgttatagtaaataaagaagtgtgcatgcttgtcattcacagagagacccaaatggaagaagtgaaacttaaattttattaattgtcaacctttgcactaccaaaatatgatgagaaaagtaggCTTCCGAAATCATGT---ATTCATACCA-AAGTTCCAAGCATGAATTTTTTTT-CTAAATTCACAATTCAAACACGACTCTGACAATG-CTGTCAAAATGTTTAAAATACATCAAAAATGC-----CATTCAAAT-AAAAAAAAATGAGCGTTAAAATAAGGAATATGCA-TTTT-TTAAAGAAGAAGAAACAAGGATTATTTATAGACGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTTCTATGacatctttctaaat
gi|13 : AAN-NNNNNNNN-NGAGCATTAAAAATAGGAAAATGCA-TTTT-T-AAAGAAGAAGAATTGAGGATTATTTACAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGcctgaaataccatacagtaaaacaatgagcgtatgcacacataactttaatttcaaagaattagattatacctttattcaataaagggcgaaaaaatatatataaaaaaaactaaattgtaaaa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): AATGGACTGTGTTTCATTATAAGGAAACTCTTTTTTTCATAATTACCTTTTTTTACTAAGTACTATCAATTTGAAGTAATACTGCCAAGTTGCTGGTATTAAACACTGGAACTATTGTCAAAATACCACTTTTTACATGGTCATTCTAAACAGGCACGAGATGTTTACCAACATGCAATTTTAATGGGTTTGACTAATTTTACCCAAAATTTTTTTTTTACCTAATTCCATTAAATTTTTTACACCAAAACAGTCTCATGACACAATGAAGACATTATCTTACCAAAATACATTATTCAATACAATGTATATGCTAAAAATTTGCACA
Unaligned ( gi|15 ): AAATTTATTATTAACTTAAATCTAGTCAAAAACTTTACACCAATACAGTCTCACGACACAATGAAGATATTTGTTTACCAAATTACACTTTGATCTTTTCAATGATTTAAAAAATATAT
Unaligned ( gi|17 ): TATGCCAATGTATATTCATGCGCCTTAAAGTCAATCTATTGTAAAAATGCAA
Alignments
lowQualScore : 1111111 111111 11111 11
lowQualScore : 55 0000000 2 666 1 3 4 4 2 11 777 1 55 2 3 222222 4 2 1 22222 55 5 2 5 66 5 5 4 0 3 88888 2
lowQualScore : .. ....... . ... . . . . . .. ... . .. . . ...... . . . ..... .. . . . .. . . . . . ..... .
lowQualScore : 44 8888888 5 444 0 6 4 4 0 99 000 6 88 4 4 888888 4 6 0 55555 11 0 0 0 99 0 0 2 1 2 00000 0
consensus : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
Reference ( family-1416 ) : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAANAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAACGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
gi|1 : GGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATC-AAAATATGATGAAAAAA-GTCG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCTAGCAT
gi|10 : tataaggagactttttttttaatttcataattacctcttttttactaagtactatcaatttgaaggaatattgccaagttgcaggcattaaatactgaaacttttgtcaaaatacaactttttacatggtcattatatacaggcgcgagatgttgaccgacatgcaattttgatgtgtgtgactaattttaccaaataaaattttttttttacctaattccattaaaatatttgcaccaaaatagtctcatgatacactgaaaacattatcttaccaaaatacattattcaatacaatgtacatgctaaaaattgcacatttttatcatccaaaataaaaaatcttcaaaaatttgtgatttttcatgaaatttcaatgtagatatgcacatatatgctttatttgaggcataaacttgccaaaatgatgttttttttatgaagcaaatgcctccaatttgtcatttaagactatgagagtgtaaaaaagaagttattttacctacaattaacattttggaaaatcacccccatttcactcaagtctctcttataGTCATGTTTCATCCAAGAGAGTATTTT---G---GGTGTGCGTGTTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTCATACCCAAATTTCCAAACATCGTTAATTTTTCCAAAATGTGCAATTTAAACA------TGACAATGATTTTCAAAATGTTCCAAATACACCAATAAATC-----CATTCAAGT--CACCAAA-TAAGCAATGAGGTAAGGAAAACGGA-TTTCTT-T-TAATAATAATAAACAAGGGGTA---------G----TATGCGTCTG-TCCAAGGAAACACT
gi|11 : ttatagaaagacccatcatcaaagaaggaaaaattgtttgttgacaaagctcgtGGTGTAAA-CCGACTATTACTTTGTATTCTTTATGTTATA-------GTAAATAA-AGAA---GTGTGCATGCTTGTCATTCACAGAGAGACCCAAATGGAAGAAGTGAAACTTAAATTTTATTAATTGTCAACCTTTGCACTACC-AAAATATGATGAGAAAA-GTAG-GG--TATGT
gi|11 : ataaaatatgtcagagatggtaacgcttacGTATGTACACTGTTGACAAATAGAAAGTAGACTTCCGAAATCATGTATAATTCATATCCCAGCTTTCAAGCATCA----TTTTTGCTAAATGCACAATTCAAACA------TGAACAT--CTTTCTAAATacactgttgacaaatagaaagtagacttccgaaatcatgtataattcatatcccagctttcaagcatcatttttgctaaatgcacaattcaaacatgaacatctttctaaat
gi|12 : ataaaatatgtcagagatggtaacgcttacggtgtaaaccgactattactttgtattctttatgttatagtaaataaagaagtgtgcatgcttgtcattcacagagagacccaaatggaagaagtgaaacttaaattttattaattgtcaacctttgcactaccaaaatatgatgagaaaagtaggGGTGTAAA-CCCACCGTTAAATTTTGTTCTTTATTATATACAATGAAGTAAATAAAAGAA---GTGTGCATGTTAATCATTCATTGAAGGACCCACATGTATGAAGTAAAGCTAACAGTTTATTGTTTGTCAACCTCAACACTACC-AAAATAAGATAAGAAAA-GTAG-TGTTCA-GTGT
gi|13 : tcaaacacaacgtcgagacataattgcatgttaatatgccgttgattaatcaaataaagccttataaagtataaggtgaatcacattaatGGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAA
gi|13 : gactcatgcatattcattacaaatagcctctataAAN-NNNNNNNN-NGAGCATTAAAAATAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAATTGAGGATTATTTACAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGnnnnnnnnnngagcattaaaaataggaaaatgcatttttaaagaagaagaattgaggattatttacaaccgccattatgcgactaccccacggaagcacttcctttttgcaatggtggcactatgcctataccaatgtatattcatgcgccttaaagtcaatctattgcaaaaacgcaa
gi|14 : gactcatgcatattcattacaaatagcctctataggtgtaaccccaccattgatttttgttctttattctatagtGGTGTATA-CCCACCATTGATTTTTGTTCTTGATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTAATCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTAACATTTTACTGTTTGTCAACCTCTACACTATC-AAAATcctataccaatgtatattcatgcgccttaaagtcaatctattgcaaaaacgcaa
gi|16 : ataatttagtcagcttatagctgacgtcattatgaaagtcagcgttttaTTATTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAAGC--GTCATTCACAGAGACACCCAAATGAAATAAGTGAGCCTTTTATTCTA--------------CTGCACTACC-AAGATAT
gi|18 : TTTTGTTCTTTATTTTATA-------GTAAATATAAAAA---GTTTGCATGTTTGT-ATT
gi|19 : TATATTAGATGTTTTTT--GTCCAGTGTGTACACTGTTGACAA
gi|2 : CCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAATGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGAAACCTACATTTGACTATTTGTCAATCTCTGCACTATC-AAAATATTATGAGAAAAAGTAG-GAGTCATGTGTCATAAAAGAGAATTTCTTTCTGCTAAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTAATACCCTAATTTCCAAGTATAATTTTTTTTTTCTAAATTCATAATTCAAACA------TGACAATG-CTATGAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA--GAGCATCAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAAAAACGAGGATTATTTATAACTGCCATTATGCGACTACCCC-TGGAAGCACTTCCTTTTTCCAGTCGTGGTACTATG
gi|20 : ttcaaccatccaaaataaaaaatcttcaaaattttgtgattttgcatgaaatttcaatgtaaatatgcatattatatgctttacttgccaaaacgtgtttttttatgaaggaaatgtctccaatataccatttaagaatatgagagtttaaaaagagtttattttaccgacaaattttacattttggaaaatcacccccatcttactcaagtctctcttaaCTTACAGTTCACTGTTTGTCAACCTCTGCACTAcctaatacacagatattacagggaaccacagtgcatagtgaacatttattacaaggaactgcggtgcacattgttaatcta
gi|3 : GGTGTAACGCCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAC---GTTTGAAGGTTTGTCATTCATAGACAGACCGAAATGAGTGAAGTGAAACTTACAATTTACTGTTTGTCAACCTCTGCACTACTAAAAATATGATGAGAAAA-GTAG-GGGTCATGTTTCATGTAAGAGA-TTTTTTCCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAAACAAGT---ATTCATACCCCAATTTCCAAGCATC-ATTTTTTTTTCTAAATTCCCAATTCAAACA------TGACGATG-CTTTCAAAATGTTCAAAATACATCAATAATGA-----CATTCAAAT---AAAAAA-TGAGCATTAAAATAAGGAAAACGCATTT--TT-T-AAAGAAGAAGAAAC-AGAA--A--------------TATGCGACTATC-----------TTTCCATTTTCCAATG
gi|4 : aataggaataatggtgtccgtagctgtccaggtatgtcttgtaGGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATC-AATATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACATTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAATTTCACAATTCAAACA------TGACAATG-CTGTCAAAGTGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGATATGAGGATAATTTAAAATTGCCATTATGAGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATGccttatacaatatacgata
gi|5 : GGTGTAAG-CCCACCATT--------------ATTCTATA-------GTAAATGATAAAT---GTTTAAAGACTTGTCATTCATAGATCGATCCAAATGAAAGAAGCGAAACTTACATTTTACTGTTTGTCAATCTCTACACTACT-AAAATATGATGACAAAA-GTAAAGGGTCATGTGTCATATAAGA--TTTTTTTTCTGCTCAGTGTGTAAACTGTTGACAAAGTAAAAGTAGACTTCCGAAATCATGT---ATTCATACCCAAATTTCAAACCATTAATTTTGTTTTCTAAATCAACAATTCAAACA------TGACAATG-CTGTCAAAATGTTCAAAATACATTCATAATGC-----CATTTAAAT--AAAAAAA-TGAGGATTGGAATAAGGAAAATGCA--T--TT-T-AAAGACGAATAAACAAGGATTATTTATAACCGCCGTTATGCGACTACACCGCGGAAGCACTTCCGTTTTCCAATGATGGTACTATG
gi|6 : aATTTTACTGTTTGTCAACCTCTGCACTACC-AAGATTTGATGGGAA---GTAA-GGGTGATGTGTCATATAAGAGATTTT--TTCTGCTCAGGTTGTATATTGTTGACAAAGTGAAAGAAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTGTTTTTCTAAATTCACAAATGAAACA------TGACAATG-CTTTCAAAATGTTAAAAATACAACAAAAATGA-----CATTCAAATAAAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TTAT-AGA-AAAAAGAAACAAGGATTATTTATTAATGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGATGGTACTACGacaat
gi|7 : TGTAAT-CT-ACAATTGATGTTTGTTCTTTATTCTATT-------GTAAATAAAAAAAAATGTTTAACTGTTTGT---------------TCAATTGAAAGAAATTAAACTTACATTTTATTGTTTGTCAACCTCTGCCCTAAC-AAAATATGAAGGGAAAA-GTAG-GGGTCATGTTTCATCGAAGAGATTTTT----TGTTCAGTGTGTACACTGTTGACAAAGTGATAGTAGACCTCAGAA----------ATTCATACACCAATTTCAAAGCGTC-ATTTGTTTTCCTAAATTCGCAAT----ACA--------------------AAAATGTTCAAAATACATAAAAAATGCATATACATTTAAAT-cctttaatggtagatcgagcactaaaaaagaaaatagataaataacttattttaacaaaaaataaaaaaaatatatgatga
gi|8 : ttttacaaacaattcaattcacccctatatacaCTTCCGAAATCATGT---ATTCATACCA-AAGTTCCAAGCATGAATTTTTTTT-CTAAATTCACAATTCAAACACGACTCTGACAATG-CTGTCAAAATGTTTAAAATACATCAAAAATGC-----CATTCAAAT-AAAAAAAAATGAGCGTTAAAATAAGGAATATGCA-TT--TT-TTAAAGAAGAAGAAACAAGGATTATTTATAGACGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTTCTATGcttgaattttttattagaccaacccttaccgaaattcctatatccgcatatcaacaatacatgcat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATGGACTGTGTTTCATTATAAGGAAACTCTTTTTTTCATAATTACCTTTTTTTACTAAGTACTATCAATTTGAAGTAATACTGCCAAGTTGCTGGTATTAAACACTGGAACTATTGTCAAAATACCACTTTTTACATGGTCATTCTAAACAGGCACGAGATGTTTACCAACATGCAATTTTAATGGGTTTGACTAATTTTACCCAAAATTTTTTTTTTACCTAATTCCATTAAATTTTTTACACCAAAACAGTCTCATGACACAATGAAGACATTATCTTACCAAAATACATTATTCAATACAATGTATATGCTAAAAATTTGCACA
Unaligned ( gi|15 ): AAATTTATTATTAACTTAAATCTAGTCAAAAACTTTACACCAATACAGTCTCACGACACAATGAAGATATTTGTTTACCAAATTACACTTTGATCTTTTCAATGATTTAAAAAATATAT
Unaligned ( gi|17 ): TATGCCAATGTATATTCATGCGCCTTAAAGTCAATCTATTGTAAAAATGCAA
Alignments
lowQualScore : 1111111 111111 11111 11
lowQualScore : 55 0000000 2 666 1 3 4 4 2 11 777 1 55 2 3 222222 4 2 0 22222 55 5 5 66 5 5 4 0 3 88888 2
lowQualScore : .. ....... . ... . . . . . .. ... . .. . . ...... . . . ..... .. . . .. . . . . . ..... .
lowQualScore : 44 8888888 5 444 0 6 4 4 0 99 000 6 88 4 4 888888 4 6 8 55555 11 0 0 99 0 0 2 1 2 00000 0
consensus : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
Reference ( family-1416 ) : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
gi|1 : GGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATC-AAAATATGATGAAAAAA-GTCG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCTAGCAT
gi|10 : tataaggagactttttttttaatttcataattacctcttttttactaagtactatcaatttgaaggaatattgccaagttgcaggcattaaatactgaaacttttgtcaaaatacaactttttacatggtcattatatacaggcgcgagatgttgaccgacatgcaattttgatgtgtgtgactaattttaccaaataaaattttttttttacctaattccattaaaatatttgcaccaaaatagtctcatgatacactgaaaacattatcttaccaaaatacattattcaatacaatgtacatgctaaaaattgcacatttttatcatccaaaataaaaaatcttcaaaaatttgtgatttttcatgaaatttcaatgtagatatgcacatatatgctttatttgaggcataaacttgccaaaatgatgttttttttatgaagcaaatgcctccaatttgtcatttaagactatgagagtgtaaaaaagaagttattttacctacaattaacattttggaaaatcacccccatttcactcaagtctctcttataGTCATGTTTCATCCAAGAGAGTATTTT---G---GGTGTGCGTGTTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTCATACCCAAATTTCCAAACATCGTTAATTTTTCCAAAATGTGCAATTTAAACA------TGACAATGATTTTCAAAATGTTCCAAATACACCAATAAATC-----CATTCAAGT--CACCAAA-TAAGCAATGAGGTAAGGAAAACGGA-TTTCTT-T-TAATAATAATAAACAAGGGGTA---------G----TATGCGTCTG-TCCAAGGAAACACT
gi|11 : ttatagaaagacccatcatcaaagaaggaaaaattgtttgttgacaaagctcgtGGTGTAAA-CCGACTATTACTTTGTATTCTTTATGTTATA-------GTAAATAA-AGAA---GTGTGCATGCTTGTCATTCACAGAGAGACCCAAATGGAAGAAGTGAAACTTAAATTTTATTAATTGTCAACCTTTGCACTACC-AAAATATGATGAGAAAA-GTAG-GG--TATGT
gi|11 : ataaaatatgtcagagatggtaacgcttacGTATGTACACTGTTGACAAATAGAAAGTAGACTTCCGAAATCATGTATAATTCATATCCCAGCTTTCAAGCATCA----TTTTTGCTAAATGCACAATTCAAACA------TGAACAT--CTTTCTAAATacactgttgacaaatagaaagtagacttccgaaatcatgtataattcatatcccagctttcaagcatcatttttgctaaatgcacaattcaaacatgaacatctttctaaat
gi|12 : ataaaatatgtcagagatggtaacgcttacggtgtaaaccgactattactttgtattctttatgttatagtaaataaagaagtgtgcatgcttgtcattcacagagagacccaaatggaagaagtgaaacttaaattttattaattgtcaacctttgcactaccaaaatatgatgagaaaagtaggGGTGTAAA-CCCACCGTTAAATTTTGTTCTTTATTATATACAATGAAGTAAATAAAAGAA---GTGTGCATGTTAATCATTCATTGAAGGACCCACATGTATGAAGTAAAGCTAACAGTTTATTGTTTGTCAACCTCAACACTACC-AAAATAAGATAAGAAAA-GTAG-TGTTCA-GTGT
gi|13 : tcaaacacaacgtcgagacataattgcatgttaatatgccgttgattaatcaaataaagccttataaagtataaggtgaatcacattaatGGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAA
gi|13 : gactcatgcatattcattacaaatagcctctataAAN-NNNNNNNN-NGAGCATTAAAAATAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAATTGAGGATTATTTACAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGnnnnnnnnnngagcattaaaaataggaaaatgcatttttaaagaagaagaattgaggattatttacaaccgccattatgcgactaccccacggaagcacttcctttttgcaatggtggcactatgcctataccaatgtatattcatgcgccttaaagtcaatctattgcaaaaacgcaa
gi|14 : gactcatgcatattcattacaaatagcctctataggtgtaaccccaccattgatttttgttctttattctatagtGGTGTATA-CCCACCATTGATTTTTGTTCTTGATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTAATCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTAACATTTTACTGTTTGTCAACCTCTACACTATC-AAAATcctataccaatgtatattcatgcgccttaaagtcaatctattgcaaaaacgcaa
gi|16 : ataatttagtcagcttatagctgacgtcattatgaaagtcagcgttttaTTATTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAAGC--GTCATTCACAGAGACACCCAAATGAAATAAGTGAGCCTTTTATTCTA--------------CTGCACTACC-AAGATAT
gi|18 : TTTTGTTCTTTATTTTATA-------GTAAATATAAAAA---GTTTGCATGTTTGT-ATT
gi|19 : TATATTAGATGTTTTTT--GTCCAGTGTGTACACTGTTGACAA
gi|2 : CCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAATGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGAAACCTACATTTGACTATTTGTCAATCTCTGCACTATC-AAAATATTATGAGAAAAAGTAG-GAGTCATGTGTCATAAAAGAGAATTTCTTTCTGCTAAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTAATACCCTAATTTCCAAGTATAATTTTTTTTTTCTAAATTCATAATTCAAACA------TGACAATG-CTATGAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA--GAGCATCAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAAAAACGAGGATTATTTATAACTGCCATTATGCGACTACCCC-TGGAAGCACTTCCTTTTTCCAGTCGTGGTACTATG
gi|20 : ttcaaccatccaaaataaaaaatcttcaaaattttgtgattttgcatgaaatttcaatgtaaatatgcatattatatgctttacttgccaaaacgtgtttttttatgaaggaaatgtctccaatataccatttaagaatatgagagtttaaaaagagtttattttaccgacaaattttacattttggaaaatcacccccatcttactcaagtctctcttaaCTTACAGTTCACTGTTTGTCAACCTCTGCACTAcctaatacacagatattacagggaaccacagtgcatagtgaacatttattacaaggaactgcggtgcacattgttaatcta
gi|3 : GGTGTAACGCCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAC---GTTTGAAGGTTTGTCATTCATAGACAGACCGAAATGAGTGAAGTGAAACTTACAATTTACTGTTTGTCAACCTCTGCACTACTAAAAATATGATGAGAAAA-GTAG-GGGTCATGTTTCATGTAAGAGA-TTTTTTCCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAAACAAGT---ATTCATACCCCAATTTCCAAGCATC-ATTTTTTTTTCTAAATTCCCAATTCAAACA------TGACGATG-CTTTCAAAATGTTCAAAATACATCAATAATGA-----CATTCAAAT---AAAAAA-TGAGCATTAAAATAAGGAAAACGCATTT--TT-T-AAAGAAGAAGAAAC-AGAA--A--------------TATGCGACTATC-----------TTTCCATTTTCCAATG
gi|4 : aataggaataatggtgtccgtagctgtccaggtatgtcttgtaGGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATC-AATATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACATTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAATTTCACAATTCAAACA------TGACAATG-CTGTCAAAGTGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGATATGAGGATAATTTAAAATTGCCATTATGAGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATGccttatacaatatacgata
gi|5 : GGTGTAAG-CCCACCATT--------------ATTCTATA-------GTAAATGATAAAT---GTTTAAAGACTTGTCATTCATAGATCGATCCAAATGAAAGAAGCGAAACTTACATTTTACTGTTTGTCAATCTCTACACTACT-AAAATATGATGACAAAA-GTAAAGGGTCATGTGTCATATAAGA--TTTTTTTTCTGCTCAGTGTGTAAACTGTTGACAAAGTAAAAGTAGACTTCCGAAATCATGT---ATTCATACCCAAATTTCAAACCATTAATTTTGTTTTCTAAATCAACAATTCAAACA------TGACAATG-CTGTCAAAATGTTCAAAATACATTCATAATGC-----CATTTAAAT--AAAAAAA-TGAGGATTGGAATAAGGAAAATGCA--T--TT-T-AAAGACGAATAAACAAGGATTATTTATAACCGCCGTTATGCGACTACACCGCGGAAGCACTTCCGTTTTCCAATGATGGTACTATG
gi|6 : aATTTTACTGTTTGTCAACCTCTGCACTACC-AAGATTTGATGGGAA---GTAA-GGGTGATGTGTCATATAAGAGATTTT--TTCTGCTCAGGTTGTATATTGTTGACAAAGTGAAAGAAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTGTTTTTCTAAATTCACAAATGAAACA------TGACAATG-CTTTCAAAATGTTAAAAATACAACAAAAATGA-----CATTCAAATAAAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TTAT-AGA-AAAAAGAAACAAGGATTATTTATTAATGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGATGGTACTACGacaat
gi|7 : TGTAAT-CT-ACAATTGATGTTTGTTCTTTATTCTATT-------GTAAATAAAAAAAAATGTTTAACTGTTTGT---------------TCAATTGAAAGAAATTAAACTTACATTTTATTGTTTGTCAACCTCTGCCCTAAC-AAAATATGAAGGGAAAA-GTAG-GGGTCATGTTTCATCGAAGAGATTTTT----TGTTCAGTGTGTACACTGTTGACAAAGTGATAGTAGACCTCAGAA----------ATTCATACACCAATTTCAAAGCGTC-ATTTGTTTTCCTAAATTCGCAAT----ACA--------------------AAAATGTTCAAAATACATAAAAAATGCATATACATTTAAAT-cctttaatggtagatcgagcactaaaaaagaaaatagataaataacttattttaacaaaaaataaaaaaaatatatgatga
gi|8 : ttttacaaacaattcaattcacccctatatacaCTTCCGAAATCATGT---ATTCATACCA-AAGTTCCAAGCATGAATTTTTTTT-CTAAATTCACAATTCAAACACGACTCTGACAATG-CTGTCAAAATGTTTAAAATACATCAAAAATGC-----CATTCAAAT-AAAAAAAAATGAGCGTTAAAATAAGGAATATGCA-TT--TT-TTAAAGAAGAAGAAACAAGGATTATTTATAGACGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTTCTATGcttgaattttttattagaccaacccttaccgaaattcctatatccgcatatcaacaatacatgcat
blockSeqs : CG CAATGAA A AAT T A A A G TC ATA A AT G A CGACTC . T ATATA AA A T . A T G T CAACC A
blockSeqs : A . T . T . . . T CC . C AA T A . . A . N . . . . . G T TAACT A
blockSeqs : A . T . G . . . A TC . T AA T C . . T . A . . . . . G T AAATT G
blockSeqs : C . A . A . . . T TC . C AA T A . . G . A . . . . . A T TAACC A
blockSeqs : A . T . T . . . T TC . C AA T A . . G . A . . . . . A T TTAAT A
blockSeqs : T . T . T . . . T T . A A T A . . T . . . . . . . A T TAGAC .
blockSeqs : G . T . G . . . T . . C A C G . . G . . . . . . . . . . .
blockSeqs : T . T . G . . . . . . C A . A . . .
blockSeqs : . A . G . . .
blockSeqs : . . . T .
blockSeqs : .
blockSeqCons : A* ** TAACC
originalCons : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
finalCons : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAATAATGC-----CATTCAAATA-AAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATGGACTGTGTTTCATTATAAGGAAACTCTTTTTTTCATAATTACCTTTTTTTACTAAGTACTATCAATTTGAAGTAATACTGCCAAGTTGCTGGTATTAAACACTGGAACTATTGTCAAAATACCACTTTTTACATGGTCATTCTAAACAGGCACGAGATGTTTACCAACATGCAATTTTAATGGGTTTGACTAATTTTACCCAAAATTTTTTTTTTACCTAATTCCATTAAATTTTTTACACCAAAACAGTCTCATGACACAATGAAGACATTATCTTACCAAAATACATTATTCAATACAATGTATATGCTAAAAATTTGCACA
Unaligned ( gi|15 ): AAATTTATTATTAACTTAAATCTAGTCAAAAACTTTACACCAATACAGTCTCACGACACAATGAAGATATTTGTTTACCAAATTACACTTTGATCTTTTCAATGATTTAAAAAATATAT
Unaligned ( gi|17 ): TATGCCAATGTATATTCATGCGCCTTAAAGTCAATCTATTGTAAAAATGCAA
Alignments
lowQualScore : 1111111 111111 11111 11
lowQualScore : 55 0000000 2 666 1 3 4 4 2 11 777 1 55 2 3 222222 4 2 0 22222 55 5 5 66 5 5 4 0 3 88888 2
lowQualScore : .. ....... . ... . . . . . .. ... . .. . . ...... . . . ..... .. . . .. . . . . . ..... .
lowQualScore : 44 8888888 5 444 0 6 4 4 0 99 000 6 88 4 4 888888 4 6 8 55555 11 0 0 99 0 0 2 1 2 00000 0
consensus : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
Reference ( family-1416 ) : GGTGTAAN-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAANGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTTACATTTTACTGTTTGTCAACCTCTGCACTACC-AAAATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAAATTCGCAATTCAAACA------TGACAATG-CTNTCAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAAACGAGGATTATTTATAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTACTATG
gi|1 : GGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATC-AAAATATGATGAAAAAA-GTCG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACACTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCTAGCAT
gi|10 : tataaggagactttttttttaatttcataattacctcttttttactaagtactatcaatttgaaggaatattgccaagttgcaggcattaaatactgaaacttttgtcaaaatacaactttttacatggtcattatatacaggcgcgagatgttgaccgacatgcaattttgatgtgtgtgactaattttaccaaataaaattttttttttacctaattccattaaaatatttgcaccaaaatagtctcatgatacactgaaaacattatcttaccaaaatacattattcaatacaatgtacatgctaaaaattgcacatttttatcatccaaaataaaaaatcttcaaaaatttgtgatttttcatgaaatttcaatgtagatatgcacatatatgctttatttgaggcataaacttgccaaaatgatgttttttttatgaagcaaatgcctccaatttgtcatttaagactatgagagtgtaaaaaagaagttattttacctacaattaacattttggaaaatcacccccatttcactcaagtctctcttataGTCATGTTTCATCCAAGAGAGTATTTT---G---GGTGTGCGTGTTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTCATACCCAAATTTCCAAACATCGTTAATTTTTCCAAAATGTGCAATTTAAACA------TGACAATGATTTTCAAAATGTTCCAAATACACCAATAAATC-----CATTCAAGT--CACCAAA-TAAGCAATGAGGTAAGGAAAACGGA-TTTCTT-T-TAATAATAATAAACAAGGGGTA---------G----TATGCGTCTG-TCCAAGGAAACACT
gi|11 : ttatagaaagacccatcatcaaagaaggaaaaattgtttgttgacaaagctcgtGGTGTAAA-CCGACTATTACTTTGTATTCTTTATGTTATA-------GTAAATAA-AGAA---GTGTGCATGCTTGTCATTCACAGAGAGACCCAAATGGAAGAAGTGAAACTTAAATTTTATTAATTGTCAACCTTTGCACTACC-AAAATATGATGAGAAAA-GTAG-GG--TATGT
gi|11 : ataaaatatgtcagagatggtaacgcttacGTATGTACACTGTTGACAAATAGAAAGTAGACTTCCGAAATCATGTATAATTCATATCCCAGCTTTCAAGCATCA----TTTTTGCTAAATGCACAATTCAAACA------TGAACAT--CTTTCTAAATacactgttgacaaatagaaagtagacttccgaaatcatgtataattcatatcccagctttcaagcatcatttttgctaaatgcacaattcaaacatgaacatctttctaaat
gi|12 : ataaaatatgtcagagatggtaacgcttacggtgtaaaccgactattactttgtattctttatgttatagtaaataaagaagtgtgcatgcttgtcattcacagagagacccaaatggaagaagtgaaacttaaattttattaattgtcaacctttgcactaccaaaatatgatgagaaaagtaggGGTGTAAA-CCCACCGTTAAATTTTGTTCTTTATTATATACAATGAAGTAAATAAAAGAA---GTGTGCATGTTAATCATTCATTGAAGGACCCACATGTATGAAGTAAAGCTAACAGTTTATTGTTTGTCAACCTCAACACTACC-AAAATAAGATAAGAAAA-GTAG-TGTTCA-GTGT
gi|13 : tcaaacacaacgtcgagacataattgcatgttaatatgccgttgattaatcaaataaagccttataaagtataaggtgaatcacattaatGGTGTAAC-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAA
gi|13 : gactcatgcatattcattacaaatagcctctataAAN-NNNNNNNN-NGAGCATTAAAAATAGGAAAATGCA-TT--TT-T-AAAGAAGAAGAATTGAGGATTATTTACAACCGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGCACTATGnnnnnnnnnngagcattaaaaataggaaaatgcatttttaaagaagaagaattgaggattatttacaaccgccattatgcgactaccccacggaagcacttcctttttgcaatggtggcactatgcctataccaatgtatattcatgcgccttaaagtcaatctattgcaaaaacgcaa
gi|14 : gactcatgcatattcattacaaatagcctctataggtgtaaccccaccattgatttttgttctttattctatagtGGTGTATA-CCCACCATTGATTTTTGTTCTTGATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTAATCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACTAACATTTTACTGTTTGTCAACCTCTACACTATC-AAAATcctataccaatgtatattcatgcgccttaaagtcaatctattgcaaaaacgcaa
gi|16 : ataatttagtcagcttatagctgacgtcattatgaaagtcagcgttttaTTATTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAAGC--GTCATTCACAGAGACACCCAAATGAAATAAGTGAGCCTTTTATTCTA--------------CTGCACTACC-AAGATAT
gi|18 : TTTTGTTCTTTATTTTATA-------GTAAATATAAAAA---GTTTGCATGTTTGT-ATT
gi|19 : TATATTAGATGTTTTTT--GTCCAGTGTGTACACTGTTGACAA
gi|2 : CCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAATGCTTGTCATTCATAGAGAATCCCAAATGAAAGAAGTGAAACCTACATTTGACTATTTGTCAATCTCTGCACTATC-AAAATATTATGAGAAAAAGTAG-GAGTCATGTGTCATAAAAGAGAATTTCTTTCTGCTAAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTTCGAAATCATGT---ATTAATACCCTAATTTCCAAGTATAATTTTTTTTTTCTAAATTCATAATTCAAACA------TGACAATG-CTATGAAAATGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA--GAGCATCAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAAAAACGAGGATTATTTATAACTGCCATTATGCGACTACCCC-TGGAAGCACTTCCTTTTTCCAGTCGTGGTACTATG
gi|20 : ttcaaccatccaaaataaaaaatcttcaaaattttgtgattttgcatgaaatttcaatgtaaatatgcatattatatgctttacttgccaaaacgtgtttttttatgaaggaaatgtctccaatataccatttaagaatatgagagtttaaaaagagtttattttaccgacaaattttacattttggaaaatcacccccatcttactcaagtctctcttaaCTTACAGTTCACTGTTTGTCAACCTCTGCACTAcctaatacacagatattacagggaaccacagtgcatagtgaacatttattacaaggaactgcggtgcacattgttaatcta
gi|3 : GGTGTAACGCCCACCATTGATTTTTGTTCTTTATTCTATA-------GTCAATAATAAAC---GTTTGAAGGTTTGTCATTCATAGACAGACCGAAATGAGTGAAGTGAAACTTACAATTTACTGTTTGTCAACCTCTGCACTACTAAAAATATGATGAGAAAA-GTAG-GGGTCATGTTTCATGTAAGAGA-TTTTTTCCTGCTCAGTGTGTACACTGTTGACAAAGTGAAAGTAGACTTCCGAAAACAAGT---ATTCATACCCCAATTTCCAAGCATC-ATTTTTTTTTCTAAATTCCCAATTCAAACA------TGACGATG-CTTTCAAAATGTTCAAAATACATCAATAATGA-----CATTCAAAT---AAAAAA-TGAGCATTAAAATAAGGAAAACGCATTT--TT-T-AAAGAAGAAGAAAC-AGAA--A--------------TATGCGACTATC-----------TTTCCATTTTCCAATG
gi|4 : aataggaataatggtgtccgtagctgtccaggtatgtcttgtaGGTGTCAT-CCCACCATTGATTTTTGTTCTTTATTCTATA-------GTAAATAATAAAA---GTTTGAAGGCTTGTCATTCATAGAGAGACCCAAATGAAAGAAGTGAAACCTACATTTTACTGTTTGTCAACCTCTGCACTATC-AATATATGATGAGAAAA-GTAG-GGGTCATGTGTCATATAAGAGATTTTTTTTCTGCTCAGTGTGTACATTGGTGACAAAGTGAAAGTAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTTTTTTTCTAATTTCACAATTCAAACA------TGACAATG-CTGTCAAAGTGTTCAAAATACATCAATAATGC-----CATTCAAAT-AAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TT-T-AAAGAAGAAGATATGAGGATAATTTAAAATTGCCATTATGAGACTACCCCACGGAAGCACTTCCTTTTTGCAATGGTGGTACTATGccttatacaatatacgata
gi|5 : GGTGTAAG-CCCACCATT--------------ATTCTATA-------GTAAATGATAAAT---GTTTAAAGACTTGTCATTCATAGATCGATCCAAATGAAAGAAGCGAAACTTACATTTTACTGTTTGTCAATCTCTACACTACT-AAAATATGATGACAAAA-GTAAAGGGTCATGTGTCATATAAGA--TTTTTTTTCTGCTCAGTGTGTAAACTGTTGACAAAGTAAAAGTAGACTTCCGAAATCATGT---ATTCATACCCAAATTTCAAACCATTAATTTTGTTTTCTAAATCAACAATTCAAACA------TGACAATG-CTGTCAAAATGTTCAAAATACATTCATAATGC-----CATTTAAAT--AAAAAAA-TGAGGATTGGAATAAGGAAAATGCA--T--TT-T-AAAGACGAATAAACAAGGATTATTTATAACCGCCGTTATGCGACTACACCGCGGAAGCACTTCCGTTTTCCAATGATGGTACTATG
gi|6 : aATTTTACTGTTTGTCAACCTCTGCACTACC-AAGATTTGATGGGAA---GTAA-GGGTGATGTGTCATATAAGAGATTTT--TTCTGCTCAGGTTGTATATTGTTGACAAAGTGAAAGAAGACTTCCGAAATCATGT---ATTCATACCCCAATTTCCAAGCATCAATTTGTTTTTCTAAATTCACAAATGAAACA------TGACAATG-CTTTCAAAATGTTAAAAATACAACAAAAATGA-----CATTCAAATAAAAAAAAA-TGAGCATTAAAATAAGGAAAATGCA-TT--TTAT-AGA-AAAAAGAAACAAGGATTATTTATTAATGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGATGGTACTACGacaat
gi|7 : TGTAAT-CT-ACAATTGATGTTTGTTCTTTATTCTATT-------GTAAATAAAAAAAAATGTTTAACTGTTTGT---------------TCAATTGAAAGAAATTAAACTTACATTTTATTGTTTGTCAACCTCTGCCCTAAC-AAAATATGAAGGGAAAA-GTAG-GGGTCATGTTTCATCGAAGAGATTTTT----TGTTCAGTGTGTACACTGTTGACAAAGTGATAGTAGACCTCAGAA----------ATTCATACACCAATTTCAAAGCGTC-ATTTGTTTTCCTAAATTCGCAAT----ACA--------------------AAAATGTTCAAAATACATAAAAAATGCATATACATTTAAAT-cctttaatggtagatcgagcactaaaaaagaaaatagataaataacttattttaacaaaaaataaaaaaaatatatgatga
gi|8 : ttttacaaacaattcaattcacccctatatacaCTTCCGAAATCATGT---ATTCATACCA-AAGTTCCAAGCATGAATTTTTTTT-CTAAATTCACAATTCAAACACGACTCTGACAATG-CTGTCAAAATGTTTAAAATACATCAAAAATGC-----CATTCAAAT-AAAAAAAAATGAGCGTTAAAATAAGGAATATGCA-TT--TT-TTAAAGAAGAAGAAACAAGGATTATTTATAGACGCCATTATGCGACTACCCCACGGAAGCACTTCCTTTTTCCAATGGTGGTTCTATGcttgaattttttattagaccaacccttaccgaaattcctatatccgcatatcaacaatacatgcat
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): AATGGACTGTGTTTCATTATAAGGAAACTCTTTTTTTCATAATTACCTTTTTTTACTAAGTACTATCAATTTGAAGTAATACTGCCAAGTTGCTGGTATTAAACACTGGAACTATTGTCAAAATACCACTTTTTACATGGTCATTCTAAACAGGCACGAGATGTTTACCAACATGCAATTTTAATGGGTTTGACTAATTTTACCCAAAATTTTTTTTTTACCTAATTCCATTAAATTTTTTACACCAAAACAGTCTCATGACACAATGAAGACATTATCTTACCAAAATACATTATTCAATACAATGTATATGCTAAAAATTTGCACA
Unaligned ( gi|15 ): AAATTTATTATTAACTTAAATCTAGTCAAAAACTTTACACCAATACAGTCTCACGACACAATGAAGATATTTGTTTACCAAATTACACTTTGATCTTTTCAATGATTTAAAAAATATAT
Unaligned ( gi|17 ): TATGCCAATGTATATTCATGCGCCTTAAAGTCAATCTATTGTAAAAATGCAA