lowQualScore : 11111111111111111111111111 333333333333333333333333333 111111111111111111111111111111111111 111111111
lowQualScore : 11 66666666666666666666666666 4444444 1111 1111111 22222222222222 1 22222222222222222222 1111111111111 111111111 1 3333333333333333333333333 11111 1 1 000000000000000000000000000 777777777777777777 8888888888888888888888888 333333333 1 2 11 33 1 2 33333333 999999999999999999999999999999999999 11 1 111111111
lowQualScore : 6 22 77777777777777777777777777 6 1 1 2222222 0 88 44 3333 444 2 6666666 2 1 2 444 33333333333333 2 2 666 88888 3 333 22 33333333333333333333 33 2 7 33 1 6666666666666 4 3 777777777 3 3 3 555 5 777 4 4 4 888 3 4 0 3333333333333333333333333 1 7 1 7 88888 3 0 2 6 6 6 111111111111111111111111111 6 000000000000000000 1111111111111111111111111 6 333333333 0 0 2 6 99 88 7 0 99999999 222222222222222222222222222222222222 3 00 7 222222222 6
lowQualScore : . .. .......................... . . . ....... . .. .. .... ... . ....... . . . ... .............. . . ... ..... . ... .. .................... .. . . .. . ............. . . ......... . . . ... . ... . . . ... . . . ......................... . . . . ..... . . . . . . ........................... . .................. ......................... . ......... . . . . .. .. . . ........ .................................... . .. . ......... .
lowQualScore : 0 00 88888888888888888888888888 0 2 7 7777777 1 66 66 1111 000 5 8888888 5 8 5 444 22222222222222 2 1 999 66666 2 777 99 33333333333333333333 11 2 1 44 4 1111111111111 5 1 777777777 3 3 1 888 2 000 0 0 0 222 7 7 2 5555555555555555555555555 0 3 0 8 66666 2 0 5 0 0 0 000000000000000000000000000 0 000000000000000000 7777777777777777777777777 7 333333333 5 0 5 0 55 00 0 0 88888888 555555555555555555555555555555555555 0 00 0 000000000 0
consensus : TTTATGTTCTATATAACTGTTGGGTCTTTTANCTAAN--AGGCCTCACCTATACATA-ATTTTATGTCCACGA--A--ACGAT-C-CAAC--TGT-ACNT----AGTC-TGA-AAG---AAA-NN-C-A---TGTAA-CTT-GAAGAAATC--AGTGCGA-----TTT---TCTA--C----------------AG--CAA--C-ACGTGTTA--CTTTCTAGANATAA-----GTGTTTAA-AA--A--GG--TC-GTCT-ATA-AAC---AGTTGTAT---T-CGT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANAATNTCGGAACGCACTTTGCTTATTACCGGAAA-TCNGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGTAGCATTAAGGGC-GG-ACGC--TT-AATCGACAAGAACGGCACCTTACGTTCTGACCNTAAAACACGCATTACAGAAGCAGAAAAGAANACGTGTTTCANAACAAAACGTTCATAAAGATANC------TTTATTTATATGATAGCATTTGAATTATCAGTAGTCTAAAAATAATCAGTGCTAAATACTNATAGGNAATGCCTCTTTAACATGCATAAAGTCAACAGCA
Reference ( gi|1 ) : TTTATATTTCATAC---------GTCTTTTAT---AT--AGGCCTCGCCTATACATACATTTTATGTCCACGA--A--ATGAT-C-TAAC--TGT-ACCT----AGTC-TGA-AAG---AAA-CA-C-A---TGTCA-CTT-GAAGAAATC--GGTGCGA-----TAT---TCTA--C----------------GA--CAA--C-ACGTGTTA--CTTTCTGGATATAA-----GTGTTTAA-AA--A--AG--TC-GTCT-ATA-AAC---AATTGTAT---T-CAT-GATTGATTT--TAGTGAAACCA--AT----T-CCG-----GATAGTTTCGGAACGCGCTTCGCTGATTACAGGAAA-TCCGAAAATTTGA------TAT--TGTC-----------GCTCGGGAATTATCGGAT--TTAAGATAGTTGTTGTTGTAGCATTTAGAACGGG-ACGTGATT-AATCGACAACAATAACACTTCACATTCTGACTGTAAAACACGCATTACAGAAGCAG-AAAGAACATATATTTCTGAACAAAGAGTTCTTAAA-ATATT------TTTATTTATATGATAGCATTT--AT----------------AT-ATCGG--------ACTTATAGGAGATGCCTCTATAACAT-----AAG-CAACGGCA
gi|6 : TTTATGTTCTATATAACTGTTGGGTCTTT-ATCTAATTAAGGTCTCACCTATTCAT---TTATATATTCACAA--T--AAGAT-C-CAAC--TAT-ATATTTATAGTC-CAA-GAG---AGA-AT-C-G---TGTCA-CTT-GAATAAATTTGAGTGTGA-----TTT---CCTG--CTTAGTGTAATTTATGTGA---AA--C-AT-TGCTA--CTTTCTAGAAGT-T-----GTGTTTAA-AA--ATTA---TT-GCCT-ATA-
gi|17 : tTTAA---AG--AGACCTCACCTATAAATG-----TATGCCAACGT--A--ATAAT-A-CAGC--TGT-AC----------------AA---AAA-TA-C-A---TGCAA-CTT-GAA-AAATT--AGTGCAA-----TTT---TCTG--C----------------
gi|4 : ttaa--AGGTCACACCCATAAAT-----TTATCTTCACGA--A--ACGATTC-GAAG--TG-----------GGC-TGA-AAG---AAA-AC-C-A---TATAA-ATT-GAATAAGTC--GATGCGC-----TTT---TCTG--C----------------AA--CAC--C-ACGTGTTT--CTTTGTATTTGTAAAACCCGTATTT---TA--A--AGT-TC-GACT-ATC-AAC---AATTATAT---T-CTT-GATTTATTT--CACTGAAACCG--ATAATGT-CAA-----AGTAA--TCCGAATGTACTCTCTTTATTACCGGAAA-Tattatttttctg
gi|9 : gGCCTCACCAATATATACATT-----CCCAAGA--A--GTGAT-T-AAAC--TGTGACGT----TGTC-TGA-AAT---AAA-AT-T-G---TATAA-CTT-GAAAACGTTA-AGTACAATTGTGTAC---TCTA--C----------------AG--TAG--C-ACATGTTA--CATTCT-----------------------A--A--AG---------------AC---AGTTATAT---T-CAT-GGTTGTTTT--TAACATAACCA--TT----T-CCT-----GACAag
gi|10 : ATATATAAATCT-GTGTCCACGAT-A--ACGAT-A--AAC--TGT-GCTT----GGTC-TTA-AAG---AAA-AT-C-A---TGTAG-CTTTGAAGCAATC--AGTGTGA-----TTT---GCTG--A----------------AG--CAA--C-ACTTGTTA--AATT-----TGTCA--------TTAAA-AA--A--AG--TT-GTCC-ATA-AAT---TGTTG-AT---TGCAT-GGTTGTTTT--AAGTAAAA
gi|20 : ACATATATTT-----CCACTA--A--AGTAT---TCAC--AGT-ACAT----AGTC-TGA-AAG---AAA-AT-G-A---CGTAA-CTT-GAAGTAATA--AGTGCGA-----T-T---TCTG--A----------------AA--CAA--C-aat
gi|5 : CATATATGT-ATGATAACGA--A--ATGTT-CGTAA-------AC-------------A-GAA---AAA-TATC-A---TATAG-CAT-GACAAAATC--AATGCGA-----TTT---TCTA--C----------------AG--TTA--C-ATTTGCTG--CTTTCTTGAAATTT-----ATATTTAA-AA--T--GG--TC-TTCT-ATA-ATC---ATTTCTAT---T-CGTAAATTTCTAT--TAGT-AAATAA--TT----T-CCG-----GAAAAATACGAAA-GTCCTTGATTTATTACGAGAAA-
gi|12 : tagttgaagaggactctacATGTCTACAATGATTATGAT-C-CA-T--TTT-ATCC----AGTA-TGA-AGGCTTAAA-TA-T-AAAGTATAAGTTT-TAAGAAATA--AGTGTGA-----TGT---TCTA--C----------------AT--C----------GTTA--CCTTCCAGATATGA-----GGGTATAATAT--A--GG--TT-ATCT-ATA-ACC---AA
gi|13 : TGTCCATGA--A---TGAT-C-CAAA--TGT-A--T----ACACATGA-GAG---AAA----------------------AGAGATC--AGTGAGA-----TA-------A--T----------------GAAACAA--C-ACTTGTTAAACTCT-TGAATTT-------GTGTTTGA-AA--T--TG--TC-GTTA-ATA-AAC---ACTTGTTT---T-CGT-GATTG-TTT--TA
gi|15 : TCC-CAA--A--ATGAT-C-CAAAGATGC-ACTA----AGTT-TAACAAA---AAATCA-C-A---TA--A-TGT-TAAAAAGTC--AGAGCGG-----TTT---TCGG--T----------------AG--TAC--C-ACTAGTTA--CTTTCTAGATACAC-----GTG-TTAA-AA--A--AG--T
gi|24 : --A--ATGAT-C-CAAC--ACT-ATCT----AGTC-TGA-ATG---AAA-CC-T-A---TGTAA-CTT-GAAGAAATC--GGTGCG
gi|3 : g--ACGAT-C-TAGC--TGT-ACAT----AATC-TAA-GAG---AA--CATC-T---TATAA-CGG-AAAGAAAGC--AGTACGA-----TAT---TATATTT----------------G---CAAATC-GCGTATTA--CCTTCTAGAAATAC-----ATG-TTAA-AACGA--TA--TCTGTCT-ATA-AAC---AGTT
gi|8 : ttattactacgatgtAAC--TGC-ACGT----AGTA-TAA-TAC---AAC-TG-C-G---TGTAG-CTA-CAAGAAACC--AGTGACA-----TTC---TCTA--C----------------AT--AAA--CTATG-GTCA--TTTACTTGAAATTA-----GTGTTTGA-AA--C--GA--TC-GTCT-ATATAGC---AGTTGCAT---T-CAT-GGTCGTTTTTATAGTGAACCGA--AT----TCCCGTAACTGACATTGTCGGAACGacaagatacaagtatttgctttttgtataaacagttgtgtacgtgaccggtttaagtaaattcagttcataaaagtctcagaacgcactttgcttaatac
gi|18 : cAC--TAT-TCGT----ACTC-TGA-AAC---AAA--A-CTA---TGCAG-CTT-G-GGAAATC--AGTGCGAAC---T-T---TCTA--C----------------AG--CAA--T-ACTTGTAA--CTTTCTAGAAATCT-----GTGTTT
gi|3 : T-ACCT------TC-T----AG---AAA-TA-C-A---TGTTA---------AAA--------CGA-----TATCTGTCTA--T----------------AA----A--C-A---GTTA--CA----AGATACAA-----GTATTT-----------GCTTT-TTGT-ATA-AAC---AGTTGTGT---A-CGT-GACCGGTTT--AAGTAAATTCA--GT----T-CAT-----AAAAGTCTCAGAACGCACTTTGCTTAATACt
gi|26 : ttattactacgatgtacgatctagctgtacataatctaagagaacatcttataacggaaagaaagcagtacgatattatatttgcaaatcgcgtatT-ACAT----AGTC-TGA-AAG---AAA-CC-T-A---TGTAA-CTT-GAAGAACTC--GG
gi|22 : A-CTT-GAAGAAATC--TGTGCTA-----TTT---TCTA--C----------------AG--CAA--C-AGTTGTTG--CTTTTTAGAGATAA-----TTGTT
gi|27 : A-CTT-GAAGAAATC--GGTGCGA-----TTT---ACTA--C----------------AA--CAA--C-ACG
gi|23 : TT-GAAGAAATC--GGTAGGA-----TTT---TCTA--C----------------AA--CAA--C-ACGTGTTA--CCTTCTAGGAATAA-----GTGTTT
gi|25 : --GGTGCGA-----TTT---TCTA--C----------------AA--CAT--G-TTGTGTTA--CTTTCTAGAAATAA-----GTGTTT
gi|11 : tT---TCTG--C----------------AC--CAA--C-ACTTGTAA--CTTTTTATAAATAT-----GAGTTTAA-AT--A--GA--TT-GTCTAAAA-AACTGAAGCTGCAT---T-CAT-GATTTGTTT--TTGTGAA--CAAGAT----T-CCT-----GAAAAAATCTG-ACACACTTTGAATATTATCGGAAACTCCta
gi|21 : -----GTGTTCCA-AAT-A--GG--TC-GTCT-A-A-AAC---AGTTGTGT---T-CAT-GAATG-TTT--AAGTGAACCTA--AT----A-CCG-----GA
gi|7 : agtA-AAC---AGTTGTATCCTT-CAT-GGT--ATT---------AACTGG-AT---------------ATAGTCTTGG--CGCACTTTGCTTATTTCTGGAAA-TCAGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGT-------------GG-ATG----T-AAACAACAACAATGGCATCTTATGTTCTGA
gi|2 : TTGTAGCATTAAGGGCGGGCGCGTT-TT-AATTGGCAAGAACAACACTTTACAGTATGACCATAAAACACGCATTACAGAAGCAGAAAAGAACACATGTTTCAGAACAAAACGTTCATAAA-ATAGC------TTTATTTATATGATAGCATTTGAATTATCAGTAGTCTAAAAAT-ATCAA--------ACTGATAGATAATGCCTCTTTAACATGCATAAAGTCAACAGCAtaa
gi|16 : tgtcAACTGG-ATGCGATTCAATCGACAAGAA----------CATTCTGACTTTAAAACACGCATTACtttcaataatttacagtcgaacctgtgtaagcggtcacctctactaagcagccacttgtcttaagcagccgcatttgctatttcccattcctaaccgttcagagcaaactgacccgtattaagcaacaacctgtcttaaaagctacttttgcttcgtcccttgactggctgcttaagacaggtttaactgtactatcggccaagtaagcatcgcgtataaacgagtcactgattatctc
gi|19 : ATTACAGAAACAG-AAAAAAGATGTGTTTCATAATAAA-CGTTCATAAAGATATTATTAGCTTTATCTAAAGGAAAGCATTgctttatttatatgatagcatttatataatcagtgctaaatatttataagaaata
gi|16 : ------TTTATTTATATGATAGCATTT--AT----------------ATAATCAGTGCTAAATATTTATAAGAAATatgatgaataatc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GAATACAGTCATATCTGTGTAAGCAGTCACTATTGAGCAGCCATTTGTCAGAAGCAGCCCTATTTGCTATTTCAAGCAACAACCTGTCTTTAAATGCCACTTCTTCTTCCCTTGACTGGCTGCTTACAGA
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 333333333 1 11 2222 33333 11 1111111111111 1111111 5555555555555555555555555555555555555555555555555555555555 222222 11 44444444444 11 2222222222222 5555 11 1 55555555 66666666666666666666666666666666666666666 22222 1
lowQualScore : 777777777 5 33 2222 1 3 3 55555 11 44 2 444 2 555555 2 444 55 444 2 2 22 2 2 55555 22 22 2222222222222 33 2 5 4 2222222 2 0 3 666 555 3 3 555 666 3 888 3 4 55 2 333 9999999999999999999999999999999999999999999999999999999999 5 3 1 999999 88 33333333333 88 77 2 3 1111111111111 5555 2 22 44 0 44 11 7 6 1 11 1 2 22222222 1 66666666666666666666666666666666666666666 1 1 4 66666 5
lowQualScore : ......... . .. .... . . . ..... .. .. . ... . ...... . ... .. ... . . .. . . ..... .. .. ............. .. . . . ....... . . . ... ... . . ... ... . ... . . .. . ... .......................................................... . . . ...... .. ........... .. .. . . ............. .... . .. .. . .. .. . . . .. . . ........ . ......................................... . . . ..... .
lowQualScore : 555555555 5 00 8888 7 5 4 99999 22 22 5 777 5 999999 5 444 33 444 2 1 99 0 2 33333 99 55 2222222222222 11 2 6 3 6666666 4 8 1 777 888 3 1 888 444 6 333 6 5 00 3 333 3333333333333333333333333333333333333333333333333333333333 0 2 0 555555 55 55555555555 00 55 5 0 7777777777777 2222 5 55 55 8 55 77 3 7 0 33 0 3 77777777 0 22222222222222222222222222222222222222222 0 0 0 55555 5
consensus : TTTATGTTCCATACAACTGTTGGGTCTTTTATCTAA--A-AGGCCTCACCTATACATA-A-TCTATGTCCACGA--A--ACGATCCAAC--TGT-A----CGTAGTC-TGAAAG---AAAANCA---TGTAA-CTT-GAAGAAATC--G-GTGCGA-TT-----TTCTGC--A-GC-------------AA--C-ACGTGTTACTTTCTAGAAATAN-----GT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T----------CCG-----G------------------ANA--G---T-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCATT-AGGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACATATGTTTCAGAACAAAGCGTTCATAAA-A------TAGCTTTATTTATATGATAGCATT----TGAATTATC------------AT-ATCGG--------ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
Reference ( family-1410 ) : TTTATGTTCTATATAACTGTTGGGTCTTTTANCTAA--N-AGGCCTCACCTATACATA-ATTTTATGTCCACGA--A--ACGATCCAAC--TGT-A----CNTAGTC-TGAAAG---AAANNCA---TGTAA-CTT-GAAGAAATC--A-GTGCGA-TT-----TTCTAC--A-GC-------------AA--C-ACGTGTTACTTTCTAGANATAA-----GT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T----------CCG-----G------------------ANA--A---T-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGTAGCATTAAGGGC-GGACGC---TTAATCGACAAGAACGGCACCTTACGTTCTGACCNTAAAACACGCATTACAGAAGCAGAAAAGAANACGTGTTTCANAACAAAACGTTCATAAAGA------TANCTTTATTTATATGATAGCATT----TGAATTATCAGTAGTCTAAAAATAATCAGTGCTAAATACTNATAGGNAATGCCTCTTTAACATGCATAAAGTCAACAGCA
gi|1 : TTTATATTTCATAC---------GTCTTTTAT---A--T-AGGCCTCGCCTATACATACATTTTATGTCCACGA--A--ATGATCTAAC--TGT-A----CCTAGTC-TGAAAG---AAACACA---TGTCA-CTT-GAAGAAATC--G-GTGCGA-TA-----TTCTAC--G-AC-------------AA--C-ACGTGTTACTTTCTGGATATAA-----GT-GTTTAA-AA-A-AGT---CGTCT-ATA-AAC---AATTGT---ATT-C--AT-GATTGATTT--TAGTGAAACCA--AT----T----------CCG-----G------------------ATA--G---T-TTCGGAACGCGCTTCGCTGATTACAGGAAATCCGAAAATTTGA------TAT--TGTC-----------GCTCGGGAATTATCGGAT--TTAAGATAGTTGTTGTTGTAGCATTTAGAACGGGACGTGA-TTAATCGACAACAATAACACTTCACATTCTGACTGTAAAACACGCATTACAGAAGCAG-AAAGAACATATATTTCTGAACAAAGAGTTCTTAAA-A------TATTTTTATTTATATGATAGCATT----TA---TAT----------------ATCGG--------ACTTATAGGAGATGCCTCTATAACAT-----AAG-CAACGGCA
gi|10 : ATATATA-AATCTGTGTCCACGAT-A--ACGATA-AAC--TGT-G----CTTGGTC-TTAAAG---AAAATCA---TGTAG-CTTTGAAGCAATC--A-GTGTGA-TT-----TGCTGA--A-GC-------------AA--C-ACTTGTT---------AAATTT-----GTCATTAAA-AA-A-AGT---TGTCC-ATA-AAT---TGTTG----ATTGC--AT-GGTTGTTTT--AAGTAAAA
gi|11 : -----TTCTGC--A-CC-------------AA--C-ACTTGTAACTTTTTATAAATAT-----GA-GTTTAA-AT-A-GAT---TGTCTAAAA-AACTGAAGCTGC---ATT-C--AT-GATTTGTTT--TTGTGAA--CAAGAT----T----------CCT-----G------------------AAA--A---A-ATCTG-ACACACTTTGAATATTATCGGAAAaat
gi|12 : ATGTCTACAATGATTATGATCCA-T--TTT-A----TCCAGTA-TGAAGGCTTAAATATAAAGTATAAGTTT-TAAGAAATA--A-GTGTGA-TG-----TTCTAC--A-TC-----------------------GTTACCTTCCAGATATGA-----GG-GTATAATAT-A-GGT---TATCT-ATA-ACC---Actcc
gi|13 : TGTCCATGA--A---TGATCCAAA--TGT-A----TACA--CATGAGAG---AAA-------------------AGAGATC--A-GTGAGA-TA-------ATGA--A-AC-------------AA--C-ACTTGTTAAACTCTTGA-ATTT-----GT-GTTTGA-AA-T-TGT---CGTTA-ATA-AAC---ACTTGT---TTT-C--GT-GATTGTTTT--a
gi|15 : TCC-CAA--A--ATGATCCAAAGATGC-A----CTAAGTT-TAACAA---AAAATCA---CATAA-TGT-TAAAAAGTC--A-GAGCGG-TT-----TTCGGT--A-GT-------------AC--C-ACTAGTTACTTTCTAGATACAC-----GT-GTTAAA-AA-A-Ga
gi|16 : -GGATGCGATTCAATCGACAAGAACA----------TTCTGACTTTAAAACACGCATTACt
gi|16 : aactCTTTATTTATATGATAGCATT----T--AT----------------ATAATCAGTGCTAAATATTTATAAGAAATgctttatttatatgatagcatttatataatcagtgctaaatatttataagaaata
gi|17 : aactggatgcgattcaatcgacaagaacattctgactttaaaacacgcattacgTTAATTAA--AGAGACCTCACCTATAAATG-----TATGCCAACGT--A--ATAATACAGC--TGT-A----C-----------AA---AAATACA---TGCAA-CTT-GAA-AAATT--A-GTGCAA-TT-----TTCTGC--A-a
gi|18 : AC--TAT-T----CGTACTC-TGAAAC---AAAACTA---TGCAG-CTT-GG-GAAATC--A-GTGCGAACT-----TTCTAC--A-GC-------------AA--T-ACTTGTAACTTTCTAGAAATCT-----GT-GTTTttatttttctg
gi|19 : ATTACAGAAACAGAAAA-AAGATGTGTTTCATAATAAA-CGTTCATAAAGATATTATTAGCTTTATCTAAAGGAAAGCATTATGATGAATAATCt
gi|2 : TTGTAGCATTAAGGGC-GGGCGCGTTTTAATTGGCAAGAACAACACTTTACAGTATGACCATAAAACACGCATTACAGAAGCAGAAAAGAACACATGTTTCAGAACAAAACGTTCATAAA-A------TAGCTTTATTTATATGATAGCATT----TGAATTATCAGTAGTCTAAAAAT-ATCAA--------ACTGATAGATAATGCCTCTTTAACATGCATAAAGTCAACAGCA
gi|20 : tgtcACATA-----TATTTCCACTA--A--AGTATTCA-C--AGT-A----CATAGTC-TGAAAG---AAAATGA---CGTAA-CTT-GAAGTAATA--A-GTGCGA--T-----TTCTGA--A-AC-------------AA--C-tttcaataatttacagtcgaacctgtgtaagcggtcacctctactaagcagccacttgtcttaagcagccgcatttgctatttcccattcctaaccgttcagagcaaactgacccgtattaagcaacaacctgtcttaaaagctacttttgcttcgtcccttgactggctgcttaagacaggtttaactgtactatcggccaagtaagcatcgcgtataaacgagtcactgattatctc
gi|21 : -----GT-GTTCCA-AATA-GGT---CGTCT-A-A-AAC---AGTTGT---GTT-C--AT-GAATG-TTT--AAGTGAACCTA--AT----A----------CCG-----G------------------A
gi|22 : agtA-CTT-GAAGAAATC--T-GTGCTA-TT-----TTCTAC--A-GC-------------AA--C-AGTTGTTGCTTTTTAGAGATAA-----TT-GTT
gi|23 : TT-GAAGAAATC--G-GTAGGA-TT-----TTCTAC--A-AC-------------AA--C-ACGTGTTACCTTCTAGGAATAA-----GT-GTTT
gi|24 : --A--ATGATCCAAC--ACT-A----TCTAGTC-TGAATG---AAACCTA---TGTAA-CTT-GAAGAAATC--G-GTGCG
gi|25 : g-GTGCGA-TT-----TTCTAC--A-AC-------------AT--G-TTGTGTTACTTTCTAGAAATAA-----GT-GTTT
gi|26 : tgT-A----CATAGTC-TGAAAG---AAACCTA---TGTAA-CTT-GAAGAACTC--G-Gta
gi|27 : A-CTT-GAAGAAATC--G-GTGCGA-TT-----TACTAC--A-AC-------------AA--C-ACG
gi|3 : --ACGATCTAGC--TGT-A----CATAATC-TAAGAG---AACATCT---TATAA-CGG-AAAGAAAGC--A-GTACGA-TA-----TTATAT--TTGC-------------AAATC-GCGTATTACCTTCTAGAAATAC-----AT-G-TTAA-AA-C-GATATCTGTCT-ATA-AAC---AGTTACAAGATA-CAAGT-ATTTGCTTT--TTGTATAAACA--GT----TGTGTACGTGACCG-----GTTTAAGTAAATTCAGTTCATA--AAAGT-CTCAGAACGCACTTTGCTTAATAC
gi|4 : ttattactacgatgt-AGGTCACACC----CATA-AATTTATCTTCACGA--A--ACGATTCGA-------A-----GTGGGC-TGAAAG---AAAACCA---TATAA-ATT-GAATAAGTC--G-ATGCGC-TT-----TTCTGC--A-AC-------------AC--C-ACGTGTTTCTTTGTATTTGTAAAACCCGT-ATTT-T-AA-A-GTT---CGACT-ATC-AAC---AATTAT---ATT-C--TT-GATTTATTT--CACTGAAACCG--ATAATGT----------C--------------------------AAA--G---TAATCCGAATGTACTCTCTTTATTACCGGAAAT
gi|5 : gAA--G-AGGACTC---TAC-CATA-----TATGT--ATGAT-A--ACGA---AA---TGT-T----CGTAAAC-AGAAA----AATATCA---TATAG-CAT-GACAAAATC--A-ATGCGA-TT-----TTCTAC--A-GT-------------TA--C-ATTTGCTGCTTTCTTGAAATTT-----AT-ATTTAA-AA-T-GGT---CTTCT-ATA-ATC---ATTTCT---ATT-C--GTAAATTTCTAT--TAGT-AAATAA--TT----T----------CCG-----G------------------AAA--A---A-TACGAAA-GTCCTTGATTTATTACGAGAAAag
gi|6 : tagttgTTTATGTTCTATATAACTGTTGGGTC-TTTATCTAATTA-AGGTCTCACCTATTCAT---TTATATATTCACAA--T--AAGATCCAAC--TAT-ATATTTATAGTC-CAAGAG---AGAATCG---TGTCA-CTT-GAATAAATTTGA-GTGTGA-TT-----TCCTGCTTA-GTGTAATTTATGTGAAA--C-AT-TGCTACTTTCTAGAAGT-T-----GT-GTTTAA-AA-ATTAT---TGCCT-ATA-
gi|7 : tA-AAC---AGTTGT---ATC-C--TT-CAT-GGTAT--TAA---------------------------CTG-----G------------------ATATAG---T-CTTGG--CGCACTTTGCTTATTTCTGGAAATCAGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGT-------------GGATG-----TAAACAACAACAATGGCATCTTATGTTCTGA
gi|8 : CAAC--TGC-A----CGTAGTA-TAATAC---AACTGCG---TGTAG-CTA-CAAGAAACC--A-GTGACA-TT-----CTCTAC--A-TA-------------AA--CTATG-GTCATTTACTTGAAATTA-----GT-GTTTGA-AA-C-GAT---CGTCT-ATATAGC---AGTTGC---ATT-C--AT-GGTCGTTTTTATAGTGAACCGA--AT----TC---------CCGTAACTG------------------ACA--T---T-GTCGGAACGtaa
gi|9 : GCCTCACCAATATATACATTC-----CCAAGA--A--GTGATTAAAC--TGTGA----CGTTGTC-TGAAAT---AAAATTG---TATAA-CTT-GAAAACGTT--AAGTACAA-TTGTGTACTCTAC--A-GT-------------AG--C-ACATGTTACATTCTA-----AA-----G-------------------------------AC---AGTTAT---ATT-C--AT-GGTTGTTTT--TAACATAACCA--TT----T----------CCT-----G------------------ACA--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAATACAGTCATATCTGTGTAAGCAGTCACTATTGAGCAGCCATTTGTCAGAAGCAGCCCTATTTGCTATTTCAAGCAACAACCTGTCTTTAAATGCCACTTCTTCTTCCCTTGACTGGCTGCTTACAGA
Alignments
lowQualScore : 333333333 1 22222 333333333 1111111111111 1111111111 11111 111111 222222 11 44444444444 11 44444444444444 1111 11 1 111 33333333 1 666666666666666666666666666 1111 22222 1
lowQualScore : 777777777 5 3 55555 1 111111111 5 0 7 2 1 555 2 666666 2 1 2 3 2 555 2 2 55555 333 22 3 2222222222222 2 2 5 777777 99 2 0 3 444 1 555 3 3 555 666 3 888 3 4 55 2 333 1111111111 22222 1 000000 5 3 1 999999 88 33333333333 22 77 1 1 00000000000000 5555 1 7 11 0 44 44 3 2 00 0 0 333 3 3 33333333 0 666666666666666666666666666 9999 1 66666 5
lowQualScore : ......... . . ..... . ......... . . . . . ... . ...... . . . . . ... . . ..... ... .. . ............. . . . ...... .. . . . ... . ... . . ... ... . ... . . .. . ... .......... ..... . ...... . . . ...... .. ........... .. .. . . .............. .... . . .. . .. .. . . .. . . ... . . ........ . ........................... .... . ..... .
lowQualScore : 555555555 5 7 88888 7 444444444 0 1 3 2 4 333 5 888888 5 4 5 4 1 666 2 2 33333 777 99 2 2222222222222 2 2 6 666666 33 4 8 1 888 6 888 3 1 888 444 6 333 6 5 00 3 333 3333333333 55555 0 222222 0 2 0 555555 55 55555555555 00 55 0 0 77777777777777 5555 0 0 00 8 55 33 2 5 88 0 2 000 2 2 22222222 0 333333333333333333333333333 7777 0 55555 5
consensus : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACATA-AT-T-ATGTCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAAC-TTGAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATC------------A-TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
Reference ( family-1410 ) : TTTATGTTCCATACAACTGTTGGGTCTTTTATCTAA--A-AGGCCTCACCTATACATA-ATCT-ATGTCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAAC-TTGAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATANGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATTATC------------A-TATCGG--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
gi|1 : TTTATATTTCATAC---------GTCTTTTATATA------GGCCTCGCCTATACATACATTTTATGTCCACGA-AATGATCTAAC--TGT-A----CCTAGTC-TGAAAGA-AACACATGTCAC-TTGAAGAAATC--GGTGCGA-T-A-----T---TCTAC--GAC-------------AA-C-ACGTGTTACTTTCTG-----GATATAAGT-GTTTAA-AA-A-AGT---CGTCT-ATA-AAC---AATTGT---ATT-C--AT-GATTGATTT--TAGTGAAACCA--AT----T-CCG-----GATA--GT-TTCGGAACGCGCTTCGCTGATTACAGGAAATCCGAAAATTTGA------TAT--TGTC-----------GCTCGGGAATTATCGGAT--TTAAGATAGTTGTTGTTGTAGCATTTA-GAACGGGACGTGA-TTAATCGACAACAATAACACTTCACATTCTGACTGTAAAACACGCATTACAGAAGCAG-AAAGAACAT-ATA-TTTCTGAACAAAGAGTTCTTAAAA-------TA-TTTTTATTTATATGATAGCATT----T--AT----------------A-TATCGG--ACTTATAGGAGATGCCTCTATAACAT-----AAG-CAACGGCA
gi|10 : TATATA-A-ATCT-GTGTCCACGATAACGAT-AAAC--TGT-G----CTTGGTC-TTAAAGA-AAATCATGTAGCTTTGAAGCAATC--AGTGTGA-T-T-----T---GCTGA--AGC-------------AA-C-ACTTGTT--------------AAATTTGTCATTAAA-AA-A-AGT---TGTCC-ATA-AAT---TGTTG----ATTGC--AT-GGTTGTTTT--AAGTAAAA
gi|11 : a-----T---TCTGC--ACC-------------AA-C-ACTTGTAACTTTTTA-----TAAATATGA-GTTTAA-AT-A-GAT---TGTCTAAAA-AACTGAAGCTGC---ATT-C--AT-GATTTGTTT--TTGTGAA--CAAGAT----T-CCT-----GAAA--AA-ATCTG-ACACACTTTGAATATTATCGGAAAaat
gi|12 : ATCCA-----GT-A----TGAAGGC-TTAAATATAAAGTATA-AGT-TTTAAGAAATA--AGTGTGA-T-G-----T---TCTAC--ATC----------------------GTTACCTTCCA-----GATATGAGG-GTATAATAT-A-GGT---TATCT-ATA-ACC---Actcc
gi|13 : atgtctacaatgattatgatccattttTGTCCATGA-A-TGATCCAAA--TGT-A----TACA--CATGAGAGA-AAA---------------GAGATC--AGTGAGA-T-A----------ATGA--AAC-------------AA-C-ACTTGTTAAACTCTT-----GAATT-TGT-GTTTGA-AA-T-TGT---CGTTA-ATA-AAC---ACTTGT---TTT-C--GT-GATTGTTTT--a
gi|15 : TCC-CAA-AATGATCCAAAGATGC-A----CTAAGTT-TAACAAA-AAATCACATAAT-GTTAAAAAGTC--AGAGCGG-T-T-----T---TCGGT--AGT-------------AC-C-ACTAGTTACTTTCTA-----GATACACGT-GTTAAA-AA-A-Ga
gi|16 : -GGATGCGATTCAATCGACAAGAACA----------TTCTGACTTTAAAACACGCATTACt
gi|16 : aactGACAAGAACATTCTGACTTTAAAACA---CG--CAT-----------TACGCTTTATTTATATGATAGCATT----TATATAATC------------AGTGCTAAATATTTATAAGAAATgctttatttatatgatagcatttatataatcagtgctaaatatttataagaaata
gi|17 : aactggatgcgattcaatcTTAATTAA--AGAGACCTCACCTATA---A-ATGT-ATGCCAACGT-AATAATACAGC--TGT-A----C-----------AAA-AATACATGCAAC-TTGAA-AAATT--AGTGCAA-T-T-----T---TCTGC--Aa
gi|18 : AC--TAT-T----CGTACTC-TGAAACA-AAACTATGCAGC-TTGG-GAAATC--AGTGCGAAC-T-----T---TCTAC--AGC-------------AA-T-ACTTGTAACTTTCTA-----GAAATCTGT-GTTTttatttttctg
gi|19 : ATTACAGAAACAGAAAA-AAGAT-GTG-TTTCATAATAAA-CGTTCATAAAGATATTATTA-GCTTTATCTAAAGGAAAGCATTATGATGAATAATC------------t
gi|2 : TTGTAGCA-TTAAGGGC-GGGCGCGTTTTAATTGGCAAGAACAACACTTTACAGTATGACCATAAAACACGCATTACAGAAGCAGAAAAGAACAC-ATG-TTTCAGAACAAAACGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATTATCAGTAGTCTAAAAA-TATCAA--ACTGATAGATAATGCCTCTTTAACATGCATAAAGTCAACAGCA
gi|20 : tgtcACATA----T-ATTTCCACTA-AAGTATTCA-C--AGT-A----CATAGTC-TGAAAGA-AAATGACGTAAC-TTGAAGTAATA--AGTGCGA---T-----T---TCTGA--AAC-------------AA-C-tttcaataatttacagtcgaacctgtgtaagcggtcacctctactaagcagccacttgtcttaagcagccgcatttgctatttcccattcctaaccgttcagagcaaactgacccgtattaagcaacaacctgtcttaaaagctacttttgcttcgtcccttgactggctgcttaagacaggtttaactgtactatcggccaagtaagcatcgcgtataaacgagtcactgattatctc
gi|21 : GT-GTTCCA-AATA-GGT---CGTCT-A-A-AAC---AGTTGT---GTT-C--AT-GAATG-TTT--AAGTGAACCTA--AT----A-CCG-----GA
gi|22 : agtAC-TTGAAGAAATC--TGTGCTA-T-T-----T---TCTAC--AGC-------------AA-C-AGTTGTTGCTTTTTA-----GAGATAATT-GTT
gi|23 : -TTGAAGAAATC--GGTAGGA-T-T-----T---TCTAC--AAC-------------AA-C-ACGTGTTACCTTCTA-----GGAATAAGT-GTTT
gi|24 : -AATGATCCAAC--ACT-A----TCTAGTC-TGAATGA-AACCTATGTAAC-TTGAAGAAATC--GGTGCG
gi|25 : g--GGTGCGA-T-T-----T---TCTAC--AAC-------------AT-G-TTGTGTTACTTTCTA-----GAAATAAGT-GTTT
gi|26 : tT-A----CATAGTC-TGAAAGA-AACCTATGTAAC-TTGAAGAACTC--GGta
gi|27 : AC-TTGAAGAAATC--GGTGCGA-T-T-----T---ACTAC--AAC-------------AA-C-ACG
gi|3 : ACGATCTAGC--TGT-A----CATAATC-TAAGAGA-ACATCTTATAAC-GGAAAGAAAGC--AGTACGA-TAT-----TATATTTGC--A---------------AATC-GCGTATTACCTTCTA-----GAAATACAT-G-TTAA-AA-C-GATATCTGTCT-ATA-AAC---AGTTACAAGATA-CAAGT-ATTTGCTTT--TTGTATAAACA--GT----T-
gi|3 : ttattactacgatgtAAA--GT-CTCAGAACGCACTTTGCTTAATACgtgtacgtgaccggtttaagtaaattcagttcataaaagtctcagaacgcactttgcttaatac
gi|4 : ttattactacgatgtacgatctagctgtacataatctaagagaacatcttataacggaaagaaagcagtacgatattatatttgcaaatcgcgtattaccttctagaaatacatgttaaaacgatatctgtctataaacagttacaagatacaagtatttgctttttgtataaacagttgtgtacgtgaccggtttaagtaaattcagttcata-AGGTCACACCCATA---A-ATTT-ATCTTCACGA-AACGATTCGA-------A-----GTGGGC-TGAAAGA-AAACCATATAAA-TTGAATAAGTC--GATGCGC-T-T-----T---TCTGC--AAC-------------AC-C-ACGTGTTTCTTTGTATTTGTAAAACCCGT-ATTT-T-AA-A-GTT---CGACT-ATC-AAC---AATTAT---ATT-C--TT-GATTTATTT--CACTGAAACCG--ATAATGT-C--------AAA--GTAATCCGAATGTACTCTCTTTATTACCGGAAAT
gi|5 : gAA--G-AGGACTC---TAC-CATA----T-ATGT--ATGATAACGA---AA---TGT-T----CGTAAAC-AGAAA-A-ATATCATATAGC-ATGACAAAATC--AATGCGA-T-T-----T---TCTAC--AGT-------------TA-C-ATTTGCTGCTTTCTT-----GAAATTTAT-ATTTAA-AA-T-GGT---CTTCT-ATA-ATC---ATTTCT---ATT-C--GTAAATTTCTAT--TAGT-AAATAA--TT----T-CCG-----GAAA--AA-TACGAAA-GTCCTTGATTTATTACGAGAAAag
gi|6 : tagttgTTTATGTTCTATATAACTGTTGGGTC-TTTATCTAATTA-AGGTCTCACCTATTCAT--TTAT-ATATTCACAA-TAAGATCCAAC--TAT-ATATTTATAGTC-CAAGAGA-GAATCGTGTCAC-TTGAATAAATTTGAGTGTGA-T-T-----T---CCTGCTTAGTGTAATTTATGTGAAA-C-AT-TGCTACTTTCTA-----GAAGT-TGT-GTTTAA-AA-ATTAT---TGCCT-ATA-
gi|7 : tA-AAC---AGTTGT---ATC-C--TT-CAT-GGTAT--TAA------------------CTG-----GATATAGT-CTTGG--CGCACTTTGCTTATTTCTGGAAATCAGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGT--------------GGATG-----TAAACAACAACAATGGCATCTTATGTTCTGA
gi|8 : CAAC--TGC-A----CGTAGTA-TAATACA-ACTGCGTGTAGC-TACAAGAAACC--AGTGACA-T-T-----C---TCTAC--ATA-------------AA-CTATG-GTCATTTACTT-----GAAATTAGT-GTTTGA-AA-C-GAT---CGTCT-ATATAGC---AGTTGC---ATT-C--AT-GGTCGTTTTTATAGTGAACCGA--AT----TCCCGTAACTGACA--TT-GTCGGAACGtaa
gi|9 : GCCTCACCAATATATA----C-ATTCCCAAGA-AGTGATTAAAC--TGTGA----CGTTGTC-TGAAATA-AAATTGTATAAC-TTGAAAACGTTA-AGTACAA-T-TGTGTAC---TCTAC--AGT-------------AG-C-ACATGTTACATTCT-----------------------AA-A-G----------------AC---AGTTAT---ATT-C--AT-GGTTGTTTT--TAACATAACCA--TT----T-CCT-----GACA--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAATACAGTCATATCTGTGTAAGCAGTCACTATTGAGCAGCCATTTGTCAGAAGCAGCCCTATTTGCTATTTCAAGCAACAACCTGTCTTTAAATGCCACTTCTTCTTCCCTTGACTGGCTGCTTACAGA
Alignments
lowQualScore : 333333333 1 22222 333333 1111111111111 1111111 111111 222222 11 44444444444 11 44444444444444 1111 11 1 111 33333333 1 2222222 888888888888 11 22222 1
lowQualScore : 777777777 5 1 55555 1 4 444444 66 3 6 2 555 2 666666 2 1 2 3 2 555 2 2 55555 333 22 3 2222222222222 2 2 5 777777 66 2 0 3 444 1 555 3 2 555 555 3 666 3 4 44 2 55 99999999 4 2222222 1 000000 5 3 1 999999 88 33333333333 22 77 1 1 00000000000000 5555 1 7 11 0 44 44 3 2 00 0 0 333 3 3 33333333 0 2222222 9 111111111111 0 88 1 66666 5
lowQualScore : ......... . . ..... . . ...... .. . . . ... . ...... . . . . . ... . . ..... ... .. . ............. . . . ...... .. . . . ... . ... . . ... ... . ... . . .. . .. ........ . ....... . ...... . . . ...... .. ........... .. .. . . .............. .... . . .. . .. .. . . .. . . ... . . ........ . ....... . ............ . .. . ..... .
lowQualScore : 555555555 5 0 88888 7 7 111111 11 6 7 5 333 5 888888 5 4 5 4 1 666 2 2 33333 777 99 2 2222222222222 2 2 6 666666 22 4 8 1 888 6 888 1 9 444 888 3 888 3 2 66 6 11 00000000 0 3333333 0 222222 0 2 0 555555 55 55555555555 00 55 0 0 77777777777777 5555 0 0 00 8 55 33 2 5 88 0 2 000 2 2 22222222 0 2222222 8 777777777777 7 33 0 55555 5
consensus : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACATA-A--TT--ATG-TCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAACTT-GAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCAG-----------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
Reference ( family-1410 ) : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACATA-A--TT--ATG-TCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAACTT-GAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCA------------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
gi|1 : TTTATATTTCATAC---------GTCTTTTATATA------GGCCTCGCCTATACATACA--TTTTATG-TCCACGA-AATGATCTAAC--TGT-A----CCTAGTC-TGAAAGA-AACACATGTCACTT-GAAGAAATC--GGTGCGA-T-A-----T---TCTAC--GAC-------------AA-C-ACGTGTTACTTTCTG-----GATATAAGT-GTTTAA-AA-A-AGT---CGTCT-ATA-AAC---AATTGT---ATT-C--AT-GATTGATTT--TAGTGAAACCA--AT----T-CCG-----GATA--GT-TTCGGAACGCGCTTCGCTGATTACAGGAAATCCGAAAATTTGA------TAT--TGTC-----------GCTCGGGAATTATCGGAT--TTAAGATAGTTGTTGTTGTAGCATTTA-GAACGGGACGTGA-TTAATCGACAACAATAACACTTCACATTCTGACTGTAAAACACGCATTACAGAAGCAG-AAAGAACAT-ATA-TTTCTGAACAAAGAGTTCTTAAAA-------TA-TTTTTATTTATATGATAGCATT----T--AT----A------------TATCGG--ACTTATAGGAGATGCCTCTATAACAT-----AAG-CAACGGCA
gi|10 : ATATATA-AATCT--GTG-TCCACGATAACGATA-AAC--TGT-G----CTTGGTC-TTAAAGA-AAATCATGTAGCTTTGAAGCAATC--AGTGTGA-T-T-----T---GCTGA--AGC-------------AA-C-ACTTGTT--------------AAATTTGTCATTAAA-AA-A-AGT---TGTCC-ATA-AAT---TGTTG----ATTGC--AT-GGTTGTTTT--AAGTAAAA
gi|11 : -----T---TCTGC--ACC-------------AA-C-ACTTGTAACTTTTTA-----TAAATATGA-GTTTAA-AT-A-GAT---TGTCTAAAA-AACTGAAGCTGC---ATT-C--AT-GATTTGTTT--TTGTGAA--CAAGAT----T-CCT-----GAAA--AA-ATCTG-ACACACTTTGAATATTATCGGAAAaat
gi|12 : CTACA-ATG-A--TT--ATGATCCATT----TTATCCA-----GT-A----TGAAGGC-TTAAATATAAAGTATA-AGTTT-TAAGAAATA--AGTGTGA-T-G-----T---TCTAC--ATC----------------------GTTACCTTCCA-----GATATGAGG-GTATAATAT-A-GGT---TATCT-ATA-ACC---Actcc
gi|13 : atgtTG-TCCATGA-A-TGATCCAAA--TGT-A----TACA--CATGAGAGA-AAA---------------GAGATC--AGTGAGA-T-A----------ATGA--AAC-------------AA-C-ACTTGTTAAACTCTT-----GAA-TTTGT-GTTTGA-AA-T-TGT---CGTTA-ATA-AAC---ACTTGT---TTT-C--GT-GATTGTTTT--a
gi|15 : -TCC-CAA-AATGATCCAAAGATGC-A----CTAAGTT-TAACAAA-AAATCACATAATGT-TAAAAAGTC--AGAGCGG-T-T-----T---TCGGT--AGT-------------AC-C-ACTAGTTACTTTCTA-----GATACACGT-GTTAAA-AA-A-Ga
gi|16 : -GGATGCGATTCAATCGACAAGAACA----------TTCTGACTTTAAAACACGCATTACt
gi|16 : aactGACAAGAACATTCTGACTTTAAAACA---CG--CAT-----------TACGCTTTATTTATATGATAGCATT----TATATAATCAG-----------TGCTAAATATTTATAAGAAATgctttatttatatgatagcatttatataatcagtgctaaatatttataagaaata
gi|17 : aactggatgcgattcaatcTTAATTAA--AGAGACCTCACCTATAAATG-----T--ATG-CCAACGT-AATAATACAGC--TGT-A----C-----------AAA-AATACATGCAACTT-GAA-AAATT--AGTGCAA-T-T-----T---TCTGC--Aa
gi|18 : AC--TAT-T----CGTACTC-TGAAACA-AAACTATGCAGCTT-GG-GAAATC--AGTGCGAAC-T-----T---TCTAC--AGC-------------AA-T-ACTTGTAACTTTCTA-----GAAATCTGT-GTTTttatttttctg
gi|19 : ATTACAGAAACAGAAAA-AAGAT-GTG-TTTCATAATAAA-CGTTCATAAAGATATTATTA-GCTTTATCTAAAGGAAAGCATTATGATGAATAATCt
gi|2 : TTGTAGCA-TTAAGGGC-GGGCGCGTTTTAATTGGCAAGAACAACACTTTACAGTATGACCATAAAACACGCATTACAGAAGCAGAAAAGAACAC-ATG-TTTCAGAACAAAACGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATTATCAGTAGTCTAAAAATATCAA--ACTGATAGATAATGCCTCTTTAACATGCATAAAGTCAACAGCA
gi|20 : tgtcACATA-----T--ATT-TCCACTA-AAGTATTCA-C--AGT-A----CATAGTC-TGAAAGA-AAATGACGTAACTT-GAAGTAATA--AGTGCGA---T-----T---TCTGA--AAC-------------AA-C-tttcaataatttacagtcgaacctgtgtaagcggtcacctctactaagcagccacttgtcttaagcagccgcatttgctatttcccattcctaaccgttcagagcaaactgacccgtattaagcaacaacctgtcttaaaagctacttttgcttcgtcccttgactggctgcttaagacaggtttaactgtactatcggccaagtaagcatcgcgtataaacgagtcactgattatctc
gi|21 : GT-GTTCCA-AATA-GGT---CGTCT-A-A-AAC---AGTTGT---GTT-C--AT-GAATG-TTT--AAGTGAACCTA--AT----A-CCG-----GA
gi|22 : agtACTT-GAAGAAATC--TGTGCTA-T-T-----T---TCTAC--AGC-------------AA-C-AGTTGTTGCTTTTTA-----GAGATAATT-GTT
gi|23 : TT-GAAGAAATC--GGTAGGA-T-T-----T---TCTAC--AAC-------------AA-C-ACGTGTTACCTTCTA-----GGAATAAGT-GTTT
gi|24 : -AATGATCCAAC--ACT-A----TCTAGTC-TGAATGA-AACCTATGTAACTT-GAAGAAATC--GGTGCG
gi|25 : g--GGTGCGA-T-T-----T---TCTAC--AAC-------------AT-G-TTGTGTTACTTTCTA-----GAAATAAGT-GTTT
gi|26 : tT-A----CATAGTC-TGAAAGA-AACCTATGTAACTT-GAAGAACTC--GGta
gi|27 : ACTT-GAAGAAATC--GGTGCGA-T-T-----T---ACTAC--AAC-------------AA-C-ACG
gi|3 : ACGATCTAGC--TGT-A----CATAATC-TAAGAGA-ACATCTTATAACGG-AAAGAAAGC--AGTACGA-TAT-----TATATTTGC--A---------------AATC-GCGTATTACCTTCTA-----GAAATACAT-G-TTAA-AA-C-GATATCTGTCT-ATA-AAC---AGTTACAAGATA-CAAGT-ATTTGCTTT--TTGTATAAACA--GT----T-
gi|3 : ttattactacgatgtT-ATA-AAC---AGTTGT---GTA-C--GT-GACCGGTTT--AAGTAAATTCA--GT----T-CAT-----AAAA--GT-CTCAGAACGCACTTTGCTTAATACgtgtacgtgaccggtttaagtaaattcagttcataaaagtctcagaacgcactttgcttaatac
gi|4 : ttattactacgatgtacgatctagctgtacataatctaagagaacatcttataacggaaagaaagcagtacgatattatatttgcaaatcgcgtattaccttctagaaatacatgttaaaacgatatctgtctataaacagttacaagatacaagtatttgctttttg-AGGTCACACCCATAAAT-----TT--ATC-TTCACGA-AACGATTCGA-------A-----GTGGGC-TGAAAGA-AAACCATATAAATT-GAATAAGTC--GATGCGC-T-T-----T---TCTGC--AAC-------------AC-C-ACGTGTTTCTTTGTATTTGTAAAACCCGT-ATTT-T-AA-A-GTT---CGACT-ATC-AAC---AATTAT---ATT-C--TT-GATTTATTT--CACTGAAACCG--ATAATGT-C--------AAA--GTAATCCGAATGTACTCTCTTTATTACCGGAAAT
gi|5 : gAA--G-AGGACTC---TAC-CATA-----T--ATG-T--ATGATAACGA---AA---TGT-T----CGTAAAC-AGAAA-A-ATATCATATAGCAT-GACAAAATC--AATGCGA-T-T-----T---TCTAC--AGT-------------TA-C-ATTTGCTGCTTTCTT-----GAAATTTAT-ATTTAA-AA-T-GGT---CTTCT-ATA-ATC---ATTTCT---ATT-C--GTAAATTTCTAT--TAGT-AAATAA--TT----T-CCG-----GAAA--AA-TACGAAA-GTCCTTGATTTATTACGAGAAAag
gi|6 : tagttgTTTATGTTCTATATAACTGTTGGGTC-TTTATCTAATTA-AGGTCTCACCTATTCATT-T--AT--ATA-TTCACAA-TAAGATCCAAC--TAT-ATATTTATAGTC-CAAGAGA-GAATCGTGTCACTT-GAATAAATTTGAGTGTGA-T-T-----T---CCTGCTTAGTGTAATTTATGTGAAA-C-AT-TGCTACTTTCTA-----GAAGT-TGT-GTTTAA-AA-ATTAT---TGCCT-ATA-
gi|7 : tA-AAC---AGTTGT---ATC-C--TT-CAT-GGTAT--TAA------------------CTG-----GATATAGT-CTTGG--CGCACTTTGCTTATTTCTGGAAATCAGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGT--------------GGATG-----TAAACAACAACAATGGCATCTTATGTTCTGA
gi|8 : CAAC--TGC-A----CGTAGTA-TAATACA-ACTGCGTGTAGCTA-CAAGAAACC--AGTGACA-T-T-----C---TCTAC--ATA-------------AA-CTATG-GTCATTTACTT-----GAAATTAGT-GTTTGA-AA-C-GAT---CGTCT-ATATAGC---AGTTGC---ATT-C--AT-GGTCGTTTTTATAGTGAACCGA--AT----TCCCGTAACTGACA--TT-GTCGGAACGtaa
gi|9 : GCCTCACCAATATATACA--TT------CCCAAGA-AGTGATTAAAC--TGTGA----CGTTGTC-TGAAATA-AAATTGTATAACTT-GAAAACGTTA-AGTACAA-T-TGTGTAC---TCTAC--AGT-------------AG-C-ACATGTTACATTCT-----------------------AA-A-G----------------AC---AGTTAT---ATT-C--AT-GGTTGTTTT--TAACATAACCA--TT----T-CCT-----GACA--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAATACAGTCATATCTGTGTAAGCAGTCACTATTGAGCAGCCATTTGTCAGAAGCAGCCCTATTTGCTATTTCAAGCAACAACCTGTCTTTAAATGCCACTTCTTCTTCCCTTGACTGGCTGCTTACAGA
Alignments
lowQualScore : 333333333 1 22222 333333 1111111111111 1111111 111111 222222 11 44444444444 11 44444444444444 1111 11 1 111 33333333 1 2222222 66666666666 11 22222 1
lowQualScore : 777777777 5 1 55555 1 4 444444 66 3 6 2 555 2 666666 2 1 2 3 2 555 2 2 55555 333 22 3 2222222222222 2 2 5 777777 66 2 0 3 444 1 555 3 2 555 555 3 666 3 4 44 2 55 99999999 4 2222222 1 000000 5 3 1 999999 88 33333333333 22 77 1 1 00000000000000 5555 1 7 11 0 44 44 3 2 00 0 0 333 3 3 33333333 0 2222222 3 33333333333 0 88 1 66666 5
lowQualScore : ......... . . ..... . . ...... .. . . . ... . ...... . . . . . ... . . ..... ... .. . ............. . . . ...... .. . . . ... . ... . . ... ... . ... . . .. . .. ........ . ....... . ...... . . . ...... .. ........... .. .. . . .............. .... . . .. . .. .. . . .. . . ... . . ........ . ....... . ........... . .. . ..... .
lowQualScore : 555555555 5 0 88888 7 7 111111 11 6 7 5 333 5 888888 5 4 5 4 1 666 2 2 33333 777 99 2 2222222222222 2 2 6 666666 22 4 8 1 888 6 888 1 9 444 888 3 888 3 2 66 6 11 00000000 0 3333333 0 222222 0 2 0 555555 55 55555555555 00 55 0 0 77777777777777 5555 0 0 00 8 55 33 2 5 88 0 2 000 2 2 22222222 0 2222222 2 33333333333 7 33 0 55555 5
consensus : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACATA-A--TT--ATG-TCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAACTT-GAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCAG-----------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
Reference ( family-1410 ) : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACATA-A--TT--ATG-TCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAACTT-GAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCAG-----------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
gi|1 : TTTATATTTCATAC---------GTCTTTTATATA------GGCCTCGCCTATACATACA--TTTTATG-TCCACGA-AATGATCTAAC--TGT-A----CCTAGTC-TGAAAGA-AACACATGTCACTT-GAAGAAATC--GGTGCGA-T-A-----T---TCTAC--GAC-------------AA-C-ACGTGTTACTTTCTG-----GATATAAGT-GTTTAA-AA-A-AGT---CGTCT-ATA-AAC---AATTGT---ATT-C--AT-GATTGATTT--TAGTGAAACCA--AT----T-CCG-----GATA--GT-TTCGGAACGCGCTTCGCTGATTACAGGAAATCCGAAAATTTGA------TAT--TGTC-----------GCTCGGGAATTATCGGAT--TTAAGATAGTTGTTGTTGTAGCATTTA-GAACGGGACGTGA-TTAATCGACAACAATAACACTTCACATTCTGACTGTAAAACACGCATTACAGAAGCAG-AAAGAACAT-ATA-TTTCTGAACAAAGAGTTCTTAAAA-------TA-TTTTTATTTATATGATAGCATT----T--ATA----------------TATCGG--ACTTATAGGAGATGCCTCTATAACAT-----AAG-CAACGGCA
gi|10 : ATATATA-AATCT--GTG-TCCACGATAACGATA-AAC--TGT-G----CTTGGTC-TTAAAGA-AAATCATGTAGCTTTGAAGCAATC--AGTGTGA-T-T-----T---GCTGA--AGC-------------AA-C-ACTTGTT--------------AAATTTGTCATTAAA-AA-A-AGT---TGTCC-ATA-AAT---TGTTG----ATTGC--AT-GGTTGTTTT--AAGTAAAA
gi|11 : -----T---TCTGC--ACC-------------AA-C-ACTTGTAACTTTTTA-----TAAATATGA-GTTTAA-AT-A-GAT---TGTCTAAAA-AACTGAAGCTGC---ATT-C--AT-GATTTGTTT--TTGTGAA--CAAGAT----T-CCT-----GAAA--AA-ATCTG-ACACACTTTGAATATTATCGGAAAaat
gi|12 : CTACA-ATG-A--TT--ATGATCCATT----TTATCCA-----GT-A----TGAAGGC-TTAAATATAAAGTATA-AGTTT-TAAGAAATA--AGTGTGA-T-G-----T---TCTAC--ATC----------------------GTTACCTTCCA-----GATATGAGG-GTATAATAT-A-GGT---TATCT-ATA-ACC---Actcc
gi|13 : atgtTG-TCCATGA-A-TGATCCAAA--TGT-A----TACA--CATGAGAGA-AAA---------------GAGATC--AGTGAGA-T-A----------ATGA--AAC-------------AA-C-ACTTGTTAAACTCTT-----GAA-TTTGT-GTTTGA-AA-T-TGT---CGTTA-ATA-AAC---ACTTGT---TTT-C--GT-GATTGTTTT--a
gi|15 : -TCC-CAA-AATGATCCAAAGATGC-A----CTAAGTT-TAACAAA-AAATCACATAATGT-TAAAAAGTC--AGAGCGG-T-T-----T---TCGGT--AGT-------------AC-C-ACTAGTTACTTTCTA-----GATACACGT-GTTAAA-AA-A-Ga
gi|16 : -GGATGCGATTCAATCGACAAGAACA----------TTCTGACTTTAAAACACGCATTACt
gi|16 : aactGACAAGAACATTCTGACTTTAAAACA---CG--CAT-----------TACGCTTTATTTATATGATAGCATT----TATATAATCAG-----------TGCTAAATATTTATAAGAAATgctttatttatatgatagcatttatataatcagtgctaaatatttataagaaata
gi|17 : aactggatgcgattcaatcTTAATTAA--AGAGACCTCACCTATAAATG-----T--ATG-CCAACGT-AATAATACAGC--TGT-A----C-----------AAA-AATACATGCAACTT-GAA-AAATT--AGTGCAA-T-T-----T---TCTGC--Aa
gi|18 : AC--TAT-T----CGTACTC-TGAAACA-AAACTATGCAGCTT-GG-GAAATC--AGTGCGAAC-T-----T---TCTAC--AGC-------------AA-T-ACTTGTAACTTTCTA-----GAAATCTGT-GTTTttatttttctg
gi|19 : ATTACAGAAACAGAAAA-AAGAT-GTG-TTTCATAATAAA-CGTTCATAAAGATATTATTA-GCTTTATCTAAAGGAAAGCATTATGATGAATAATCt
gi|2 : TTGTAGCA-TTAAGGGC-GGGCGCGTTTTAATTGGCAAGAACAACACTTTACAGTATGACCATAAAACACGCATTACAGAAGCAGAAAAGAACAC-ATG-TTTCAGAACAAAACGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATTATCAGTAGTCTAAAAATATCAA--ACTGATAGATAATGCCTCTTTAACATGCATAAAGTCAACAGCA
gi|20 : tgtcACATA-----T--ATT-TCCACTA-AAGTATTCA-C--AGT-A----CATAGTC-TGAAAGA-AAATGACGTAACTT-GAAGTAATA--AGTGCGA---T-----T---TCTGA--AAC-------------AA-C-tttcaataatttacagtcgaacctgtgtaagcggtcacctctactaagcagccacttgtcttaagcagccgcatttgctatttcccattcctaaccgttcagagcaaactgacccgtattaagcaacaacctgtcttaaaagctacttttgcttcgtcccttgactggctgcttaagacaggtttaactgtactatcggccaagtaagcatcgcgtataaacgagtcactgattatctc
gi|21 : GT-GTTCCA-AATA-GGT---CGTCT-A-A-AAC---AGTTGT---GTT-C--AT-GAATG-TTT--AAGTGAACCTA--AT----A-CCG-----GA
gi|22 : agtACTT-GAAGAAATC--TGTGCTA-T-T-----T---TCTAC--AGC-------------AA-C-AGTTGTTGCTTTTTA-----GAGATAATT-GTT
gi|23 : TT-GAAGAAATC--GGTAGGA-T-T-----T---TCTAC--AAC-------------AA-C-ACGTGTTACCTTCTA-----GGAATAAGT-GTTT
gi|24 : -AATGATCCAAC--ACT-A----TCTAGTC-TGAATGA-AACCTATGTAACTT-GAAGAAATC--GGTGCG
gi|25 : g--GGTGCGA-T-T-----T---TCTAC--AAC-------------AT-G-TTGTGTTACTTTCTA-----GAAATAAGT-GTTT
gi|26 : tT-A----CATAGTC-TGAAAGA-AACCTATGTAACTT-GAAGAACTC--GGta
gi|27 : ACTT-GAAGAAATC--GGTGCGA-T-T-----T---ACTAC--AAC-------------AA-C-ACG
gi|3 : ACGATCTAGC--TGT-A----CATAATC-TAAGAGA-ACATCTTATAACGG-AAAGAAAGC--AGTACGA-TAT-----TATATTTGC--A---------------AATC-GCGTATTACCTTCTA-----GAAATACAT-G-TTAA-AA-C-GATATCTGTCT-ATA-AAC---AGTTACAAGATA-CAAGT-ATTTGCTTT--TTGTATAAACA--GT----T-
gi|3 : ttattactacgatgtT-ATA-AAC---AGTTGT---GTA-C--GT-GACCGGTTT--AAGTAAATTCA--GT----T-CAT-----AAAA--GT-CTCAGAACGCACTTTGCTTAATACgtgtacgtgaccggtttaagtaaattcagttcataaaagtctcagaacgcactttgcttaatac
gi|4 : ttattactacgatgtacgatctagctgtacataatctaagagaacatcttataacggaaagaaagcagtacgatattatatttgcaaatcgcgtattaccttctagaaatacatgttaaaacgatatctgtctataaacagttacaagatacaagtatttgctttttg-AGGTCACACCCATAAAT-----TT--ATC-TTCACGA-AACGATTCGA-------A-----GTGGGC-TGAAAGA-AAACCATATAAATT-GAATAAGTC--GATGCGC-T-T-----T---TCTGC--AAC-------------AC-C-ACGTGTTTCTTTGTATTTGTAAAACCCGT-ATTT-T-AA-A-GTT---CGACT-ATC-AAC---AATTAT---ATT-C--TT-GATTTATTT--CACTGAAACCG--ATAATGT-C--------AAA--GTAATCCGAATGTACTCTCTTTATTACCGGAAAT
gi|5 : gAA--G-AGGACTC---TAC-CATA-----T--ATG-T--ATGATAACGA---AA---TGT-T----CGTAAAC-AGAAA-A-ATATCATATAGCAT-GACAAAATC--AATGCGA-T-T-----T---TCTAC--AGT-------------TA-C-ATTTGCTGCTTTCTT-----GAAATTTAT-ATTTAA-AA-T-GGT---CTTCT-ATA-ATC---ATTTCT---ATT-C--GTAAATTTCTAT--TAGT-AAATAA--TT----T-CCG-----GAAA--AA-TACGAAA-GTCCTTGATTTATTACGAGAAAag
gi|6 : tagttgTTTATGTTCTATATAACTGTTGGGTC-TTTATCTAATTA-AGGTCTCACCTATTCATT-T--AT--ATA-TTCACAA-TAAGATCCAAC--TAT-ATATTTATAGTC-CAAGAGA-GAATCGTGTCACTT-GAATAAATTTGAGTGTGA-T-T-----T---CCTGCTTAGTGTAATTTATGTGAAA-C-AT-TGCTACTTTCTA-----GAAGT-TGT-GTTTAA-AA-ATTAT---TGCCT-ATA-
gi|7 : tA-AAC---AGTTGT---ATC-C--TT-CAT-GGTAT--TAA------------------CTG-----GATATAGT-CTTGG--CGCACTTTGCTTATTTCTGGAAATCAGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGT--------------GGATG-----TAAACAACAACAATGGCATCTTATGTTCTGA
gi|8 : CAAC--TGC-A----CGTAGTA-TAATACA-ACTGCGTGTAGCTA-CAAGAAACC--AGTGACA-T-T-----C---TCTAC--ATA-------------AA-CTATG-GTCATTTACTT-----GAAATTAGT-GTTTGA-AA-C-GAT---CGTCT-ATATAGC---AGTTGC---ATT-C--AT-GGTCGTTTTTATAGTGAACCGA--AT----TCCCGTAACTGACA--TT-GTCGGAACGtaa
gi|9 : GCCTCACCAATATATACA--TT------CCCAAGA-AGTGATTAAAC--TGTGA----CGTTGTC-TGAAATA-AAATTGTATAACTT-GAAAACGTTA-AGTACAA-T-TGTGTAC---TCTAC--AGT-------------AG-C-ACATGTTACATTCT-----------------------AA-A-G----------------AC---AGTTAT---ATT-C--AT-GGTTGTTTT--TAACATAACCA--TT----T-CCT-----GACA--
blockSeqs : AACTGTTGG . T ATTA A T AAATC . A T C AGA G TATTTA A G T T T TGA A A GTGTA ATA TT G GTAATTTATGTGA T T T ATTTGT TT C T TA G ATC A T TGA AAG G AAG A T TA A CC ATAATG C CGTAACT A TAGTC A C A AAGTGT TA TCTGTATAACG AT GG C T AGCATTAAGGGC CGAT G A CT CA TT A G TC A AAA T A GATATTAT C ATGATGA A TAGTCTAAAAA AT T GCATA T
blockSeqs : C AAG A A ACAT . . T T C . CT . T . G . AA . . . . . C . . . T A AT . . AT A . . . . . . A . G . G AA AGAT . CT A GTAA A C . CGTT G G TC TG CA A G G . AA T A A . TAT A . .
blockSeqs : AG A C GAT . . . T A . TG . G . T . A . . . . . T . . . T A GA . . A G . . . . . . A . T . G TT AT . CG A AAA A G . C . . . A . A . . . . . . TGA A
blockSeqs : A A TTA . . . T C . TA . A . A . A . . . . . A . . . T T TT . . A G . . . . . . G . C . A AC GT . AT A GTC A T
blockSeqs : . C G . . . T C . CT . A . C . A . . . . . G . . . T A AC . . A G . . . . . . A . G . A AT GT . CG T AAT .
blockSeqs : C A . . . G C . CG . C . T . A . . . . . G . . . T A CT . . T A . . . . . . G . A . G CC TT . TG C TTG .
blockSeqs : T T . . . T C . CA . G . C . A . . . . . A . . . G A AA . . A T . . . . . . T . C . G AC AT . CT C
blockSeqs : . A . . . C C . TC . G . C . A . . . . . G . . . G A AA . . C G . . . . . . G . G . A . TT . .
blockSeqs : . . C C . CA . G . T . A . . . . . A . . . G A AA . . A A . . . . . . T . T . . . . .
blockSeqs : . . C C . CA . G . C . T . . . . . A . . . G A AC . . T A . . . . . . A . T . .
blockSeqs : . A C . CG . G . T . G . . . . . A . . . G T CC . . C . . . . . . . A . . .
blockSeqs : T . . CG . G . T . G . . . . . A . . . T A TT . . A . . .
blockSeqs : . . CG . C . G . G . . . . . G . . . G T TA . .
blockSeqs : . . C . T . T . G . . . . . G . . . A . T .
blockSeqs : . G . . . . . G . . . . . T . . . . . . .
blockSeqs : . A . . . . . G . . . . .
blockSeqs : . G . . . . . . . . .
blockSeqs : . A . . .
blockSeqs : A
blockSeqCons : A***** **
originalCons : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACATA-A--TT--ATG-TCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAACTT-GAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCAG-----------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
finalCons : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACATA-----T--ATG-TCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAACTT-GAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCAG-----------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAATACAGTCATATCTGTGTAAGCAGTCACTATTGAGCAGCCATTTGTCAGAAGCAGCCCTATTTGCTATTTCAAGCAACAACCTGTCTTTAAATGCCACTTCTTCTTCCCTTGACTGGCTGCTTACAGA
Alignments
lowQualScore : 333333333 1 22222 11111 1111111111111 1111111 111111 222222 11 44444444444 11 44444444444444 1111 11 1 111 33333333 1 2222222 66666666666 11 22222 1
lowQualScore : 777777777 5 1 55555 1 11 66 22222 0 7 2 1 555 2 666666 2 1 2 3 2 555 2 2 55555 333 22 3 2222222222222 2 2 5 777777 66 2 0 3 444 1 555 3 2 555 555 3 666 3 4 44 2 55 99999999 4 2222222 1 000000 5 3 1 999999 88 33333333333 22 77 1 1 00000000000000 5555 1 7 11 0 44 44 3 2 00 0 0 333 3 3 33333333 0 2222222 3 33333333333 0 88 1 66666 5
lowQualScore : ......... . . ..... . .. .. ..... . . . . ... . ...... . . . . . ... . . ..... ... .. . ............. . . . ...... .. . . . ... . ... . . ... ... . ... . . .. . .. ........ . ....... . ...... . . . ...... .. ........... .. .. . . .............. .... . . .. . .. .. . . .. . . ... . . ........ . ....... . ........... . .. . ..... .
lowQualScore : 555555555 5 0 88888 7 88 99 55555 1 3 2 4 333 5 888888 5 4 5 4 1 666 2 2 33333 777 99 2 2222222222222 2 2 6 666666 22 4 8 1 888 6 888 1 9 444 888 3 888 3 2 66 6 11 00000000 0 3333333 0 222222 0 2 0 555555 55 55555555555 00 55 0 0 77777777777777 5555 0 0 00 8 55 33 2 5 88 0 2 000 2 2 22222222 0 2222222 2 33333333333 7 33 0 55555 5
consensus : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACA--TA-----TATGTCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAAC-TTGAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCAG-----------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
Reference ( family-1410 ) : TTTATGTTCCATACAACTGTTGGGTCTTTTATNTAA--A-AGGCCTCACCTATACA--TA-----TATGTCCACGA-AACGATCCAAC--TGT-A----CGTAGTC-TGAAAGA-AAANCATGTAAC-TTGAAGAAATC--GGTGCGA-T-T-----T---TCTGC--AGC-------------AA-C-ACGTGTTACTTTCTA-----GAAATNNGT-GTTTAA-AA-A-GGT---CGTCT-ATA-AAC---AGTTGT---ATT-C--GT-GATTGNTTT--TAGTGAAACCA--AT----T-CCG-----GANA--GT-NTCGGAACGCACTTTGCTTATTACCGGAAATCNGAAGACTTGAAAGTGTTATTATGTCTCTGTATAACGGCTCGGGAATNNTCGGATGGTTNANACGGTTGTTGTTGTAGCA-TTA-GGGC-GGACGCGATTTAATCGACAANAACAACACTTTACGTTCTGACCGTAAAACACGCATTACAGAAGCAGAAAAGAACAT-ATG-TTTCAGAACAAAGCGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATAATCAG-----------TATCGA--ACTTATAGGAAATGCCTCTNTAACATGCATAAAGTCAACGGCA
gi|1 : TTTATATTTCATAC---------GTCTTTTATATA------GGCCTCGCCTATACA--TACATTTTATGTCCACGA-AATGATCTAAC--TGT-A----CCTAGTC-TGAAAGA-AACACATGTCAC-TTGAAGAAATC--GGTGCGA-T-A-----T---TCTAC--GAC-------------AA-C-ACGTGTTACTTTCTG-----GATATAAGT-GTTTAA-AA-A-AGT---CGTCT-ATA-AAC---AATTGT---ATT-C--AT-GATTGATTT--TAGTGAAACCA--AT----T-CCG-----GATA--GT-TTCGGAACGCGCTTCGCTGATTACAGGAAATCCGAAAATTTGA------TAT--TGTC-----------GCTCGGGAATTATCGGAT--TTAAGATAGTTGTTGTTGTAGCATTTA-GAACGGGACGTGA-TTAATCGACAACAATAACACTTCACATTCTGACTGTAAAACACGCATTACAGAAGCAG-AAAGAACAT-ATA-TTTCTGAACAAAGAGTTCTTAAAA-------TA-TTTTTATTTATATGATAGCATT----T--ATA----------------TATCGG--ACTTATAGGAGATGCCTCTATAACAT-----AAG-CAACGGCA
gi|10 : TATAAA--TC-----TGTGTCCACGATAACGAT-AAAC--TGT-G----CTTGGTC-TTAAAGA-AAATCATGTAGCTTTGAAGCAATC--AGTGTGA-T-T-----T---GCTGA--AGC-------------AA-C-ACTTGTT--------------AAATTTGTCATTAAA-AA-A-AGT---TGTCC-ATA-AAT---TGTTG----ATTGC--AT-GGTTGTTTT--AAGTAAAA
gi|11 : ata-----T---TCTGC--ACC-------------AA-C-ACTTGTAACTTTTTA-----TAAATATGA-GTTTAA-AT-A-GAT---TGTCTAAAA-AACTGAAGCTGC---ATT-C--AT-GATTTGTTT--TTGTGAA--CAAGAT----T-CCT-----GAAA--AA-ATCTG-ACACACTTTGAATATTATCGGAAAaat
gi|12 : ATCCA-----GT-A----TGAAGGC-TTAAATATAAAGTATA-AGT-TTTAAGAAATA--AGTGTGA-T-G-----T---TCTAC--ATC----------------------GTTACCTTCCA-----GATATGAGG-GTATAATAT-A-GGT---TATCT-ATA-ACC---Actcc
gi|13 : atgtctacaatgattatgatccattttTGTCCATGA-A-TGATCCAAA--TGT-A----TACA--CATGAGAGA-AAA---------------GAGATC--AGTGAGA-T-A----------ATGA--AAC-------------AA-C-ACTTGTTAAACTCTT-----GAA-TTTGT-GTTTGA-AA-T-TGT---CGTTA-ATA-AAC---ACTTGT---TTT-C--GT-GATTGTTTT--a
gi|15 : TCC-CAA-AATGATCCAAAGATGC-A----CTAAGTT-TAACAAA-AAATCACATAAT-GTTAAAAAGTC--AGAGCGG-T-T-----T---TCGGT--AGT-------------AC-C-ACTAGTTACTTTCTA-----GATACACGT-GTTAAA-AA-A-Ga
gi|16 : -GGATGCGATTCAATCGACAAGAACA----------TTCTGACTTTAAAACACGCATTACt
gi|16 : aactGACAAGAACATTCTGACTTTAAAACA---CG--CAT-----------TACGCTTTATTTATATGATAGCATT----TATATAATCAG-----------TGCTAAATATTTATAAGAAATgctttatttatatgatagcatttatataatcagtgctaaatatttataagaaata
gi|17 : aactggatgcgattcaatcTTAATTAA--AGAGACCTCACCTATAAA--TG-----TATGCCAACGT-AATAATACAGC--TGT-A----C-----------AAA-AATACATGCAAC-TTGAA-AAATT--AGTGCAA-T-T-----T---TCTGC--Aa
gi|18 : AC--TAT-T----CGTACTC-TGAAACA-AAACTATGCAGC-TTGG-GAAATC--AGTGCGAAC-T-----T---TCTAC--AGC-------------AA-T-ACTTGTAACTTTCTA-----GAAATCTGT-GTTTttatttttctg
gi|19 : ATTACAGAAACAGAAAA-AAGAT-GTG-TTTCATAATAAA-CGTTCATAAAGATATTATTA-GCTTTATCTAAAGGAAAGCATTATGATGAATAATCt
gi|2 : TTGTAGCA-TTAAGGGC-GGGCGCGTTTTAATTGGCAAGAACAACACTTTACAGTATGACCATAAAACACGCATTACAGAAGCAGAAAAGAACAC-ATG-TTTCAGAACAAAACGTTCATAAAA-------TA-GCTTTATTTATATGATAGCATT----TGAATTATCAGTAGTCTAAAAATATCAA--ACTGATAGATAATGCCTCTTTAACATGCATAAAGTCAACAGCA
gi|20 : tgtcACA--TA-----TATTTCCACTA-AAGTATTCA-C--AGT-A----CATAGTC-TGAAAGA-AAATGACGTAAC-TTGAAGTAATA--AGTGCGA---T-----T---TCTGA--AAC-------------AA-C-tttcaataatttacagtcgaacctgtgtaagcggtcacctctactaagcagccacttgtcttaagcagccgcatttgctatttcccattcctaaccgttcagagcaaactgacccgtattaagcaacaacctgtcttaaaagctacttttgcttcgtcccttgactggctgcttaagacaggtttaactgtactatcggccaagtaagcatcgcgtataaacgagtcactgattatctc
gi|21 : GT-GTTCCA-AATA-GGT---CGTCT-A-A-AAC---AGTTGT---GTT-C--AT-GAATG-TTT--AAGTGAACCTA--AT----A-CCG-----GA
gi|22 : agtAC-TTGAAGAAATC--TGTGCTA-T-T-----T---TCTAC--AGC-------------AA-C-AGTTGTTGCTTTTTA-----GAGATAATT-GTT
gi|23 : -TTGAAGAAATC--GGTAGGA-T-T-----T---TCTAC--AAC-------------AA-C-ACGTGTTACCTTCTA-----GGAATAAGT-GTTT
gi|24 : -AATGATCCAAC--ACT-A----TCTAGTC-TGAATGA-AACCTATGTAAC-TTGAAGAAATC--GGTGCG
gi|25 : g--GGTGCGA-T-T-----T---TCTAC--AAC-------------AT-G-TTGTGTTACTTTCTA-----GAAATAAGT-GTTT
gi|26 : tT-A----CATAGTC-TGAAAGA-AACCTATGTAAC-TTGAAGAACTC--GGta
gi|27 : AC-TTGAAGAAATC--GGTGCGA-T-T-----T---ACTAC--AAC-------------AA-C-ACG
gi|3 : ACGATCTAGC--TGT-A----CATAATC-TAAGAGA-ACATCTTATAAC-GGAAAGAAAGC--AGTACGA-TAT-----TATATTTGC--A---------------AATC-GCGTATTACCTTCTA-----GAAATACAT-G-TTAA-AA-C-GATATCTGTCT-ATA-AAC---AGTTACAAGATA-CAAGT-ATTTGCTTT--TTGTATAAACA--GT----T-
gi|3 : ttattactacgatgtT-ATA-AAC---AGTTGT---GTA-C--GT-GACCGGTTT--AAGTAAATTCA--GT----T-CAT-----AAAA--GT-CTCAGAACGCACTTTGCTTAATACgtgtacgtgaccggtttaagtaaattcagttcataaaagtctcagaacgcactttgcttaatac
gi|4 : ttattactacgatgtacgatctagctgtacataatctaagagaacatcttataacggaaagaaagcagtacgatattatatttgcaaatcgcgtattaccttctagaaatacatgttaaaacgatatctgtctataaacagttacaagatacaagtatttgctttttg-AGGTCACACCCATAAA--TT-----TATCTTCACGA-AACGATTCGA-------A-----GTGGGC-TGAAAGA-AAACCATATAAA-TTGAATAAGTC--GATGCGC-T-T-----T---TCTGC--AAC-------------AC-C-ACGTGTTTCTTTGTATTTGTAAAACCCGT-ATTT-T-AA-A-GTT---CGACT-ATC-AAC---AATTAT---ATT-C--TT-GATTTATTT--CACTGAAACCG--ATAATGT-C--------AAA--GTAATCCGAATGTACTCTCTTTATTACCGGAAAT
gi|5 : gAA--G-AGGACTC---TAC-CA--TA-----TATGT--ATGATAACGA---AA---TGT-T----CGTAAAC-AGAAA-A-ATATCATATAGC-ATGACAAAATC--AATGCGA-T-T-----T---TCTAC--AGT-------------TA-C-ATTTGCTGCTTTCTT-----GAAATTTAT-ATTTAA-AA-T-GGT---CTTCT-ATA-ATC---ATTTCT---ATT-C--GTAAATTTCTAT--TAGT-AAATAA--TT----T-CCG-----GAAA--AA-TACGAAA-GTCCTTGATTTATTACGAGAAAag
gi|6 : tagttgTTTATGTTCTATATAACTGTTGGGTC-TTTATCTAATTA-AGGTCTCACCTATTCATTTA-----TATATTCACAA-TAAGATCCAAC--TAT-ATATTTATAGTC-CAAGAGA-GAATCGTGTCAC-TTGAATAAATTTGAGTGTGA-T-T-----T---CCTGCTTAGTGTAATTTATGTGAAA-C-AT-TGCTACTTTCTA-----GAAGT-TGT-GTTTAA-AA-ATTAT---TGCCT-ATA-
gi|7 : tA-AAC---AGTTGT---ATC-C--TT-CAT-GGTAT--TAA------------------CTG-----GATATAGT-CTTGG--CGCACTTTGCTTATTTCTGGAAATCAGAAGACTTAAAAGTGTTATTATGTCTCTGTATAACGACTCGAGAATATTCAAATGGTTCATACGGTTGTTGTTGT--------------GGATG-----TAAACAACAACAATGGCATCTTATGTTCTGA
gi|8 : CAAC--TGC-A----CGTAGTA-TAATACA-ACTGCGTGTAGC-TACAAGAAACC--AGTGACA-T-T-----C---TCTAC--ATA-------------AA-CTATG-GTCATTTACTT-----GAAATTAGT-GTTTGA-AA-C-GAT---CGTCT-ATATAGC---AGTTGC---ATT-C--AT-GGTCGTTTTTATAGTGAACCGA--AT----TCCCGTAACTGACA--TT-GTCGGAACGtaa
gi|9 : GCCTCACCAATATA--TA-----CATTCCCAAGA-AGTGATTAAAC--TGTGA----CGTTGTC-TGAAATA-AAATTGTATAAC-TTGAAAACGTTA-AGTACAA-T-TGTGTAC---TCTAC--AGT-------------AG-C-ACATGTTACATTCT-----------------------AA-A-G----------------AC---AGTTAT---ATT-C--AT-GGTTGTTTT--TAACATAACCA--TT----T-CCT-----GACA--
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GAATACAGTCATATCTGTGTAAGCAGTCACTATTGAGCAGCCATTTGTCAGAAGCAGCCCTATTTGCTATTTCAAGCAACAACCTGTCTTTAAATGCCACTTCTTCTTCCCTTGACTGGCTGCTTACAGA