lowQualScore : 1 11 11 111 111111111 1 22 2222222 222 3333 333333 11111 1 11 111 1111 1 11 1 33333 3 44444444444444 2222222222222222 1 33333 111 1 1 1 1
lowQualScore : 4 4 4 1 6 6 3 33 0 55 999 4 777777777 5 22 7777777 4 999 5 55 4 0000 3 1 333333 3 88 8 22222 44 99 1 2 5 55 4 0 0 8 22 1 444 4444 0 5 6 77 0 1 6 5 5 77777 5 3 6 11111111111111 0 3 6 8888888888888888 0 77777 1 666 0 0 3 0 5 6 6 1 5 7 5 4
lowQualScore : . . . . . . . .. . .. ... . ......... . .. ....... . ... . .. . .... . . ...... . .. . ..... .. .. . . . .. . . . . .. . ... .... . . . .. . . . . . ..... . . . .............. . . . ................ . ..... . ... . . . . . . . . . . . .
lowQualScore : 8 8 8 0 0 1 3 88 5 99 333 3 888888888 0 00 7777777 4 222 0 55 4 2222 2 0 444444 2 22 0 44444 44 22 0 3 6 88 0 8 8 0 22 0 555 2222 5 5 5 22 4 1 0 9 0 00000 1 0 6 88888888888888 7 0 3 5555555555555555 5 22222 4 666 0 8 0 8 0 6 0 4 8 0 5 0
consensus : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTTA----AAAA-TAACATT-GACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACCA---GGTCTCTGAAAAAA-CTAAGGCTGCAAAT-CTAAATTTGGAGGCTAAAAGTCTC--ACTTCTGCCAGTGACTTAATTACATTT-ATATGTCTCTGCTTCT----GTTAACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATNATGACACAATTCTGAAAAAAGCACTTGAC-----TA--NCGT-GTGGATGATCGACTTCTTGGAAAGAANTGTTCAACTTATCACTTTGGTTAAAAGGTAAACTGGT-AAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGATGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGNCTC
Reference ( gi|1 ) : GATTTACCAATGAACTTACTAACTGCTGGCATCATAATATATTTTTCCACAATGAC-CC--TGTTTCGAAATAATAAATTTGTTTTTCTTTGCA---------AAATGGAGAATTCCTACTTGCGACGCCATTATG----AAAA-TAACA-T-GACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACCC---GGTCTCTGAAAAAAACTCAAGCTGCAAAT-CTAAATTTGGAGGTTAAAAGTCTC--ACTTCTGTCAGTGACTTAATTACATTT-ATTTGTCTCTGCTTCT----GTTAACTTCTGTAAAACAGACATTACATCAAAATGTATAAAATAATGACCTTTGCGCTT-AA-TCAGTTAGAAATCATGACACAATTCTGAAAAAAGCATGTGAC-----TG--ACAT-GTGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAGAGGTAAACTGGTAAAAGAACAATTTTGACATGTATGTAAAATCAAGAAATTCACTAGTTTTACATAAGTGTTTATGTTGTTGATAAACAACATCTGAAATATTGGCACACTTTTTATGAACCCACAAATGACAGTTGATGCACTTCGAAACTCGGTGGATTTTGTTGACCGTCTTGCAGCACAAAGTGCAAATATTTGAGGATGACTC
gi|6 : GATTGACCAATGAGCTCATTAACTACTGGCATCATAATAT--TTTTCCACATTGAC-CC--TGTTTCAAAACAATCAGTTTGATGTTCCTTGAA---------AAATGTAGAATTCGCACATGCGACGCCATTTTA----AAAACTAAAAGT-AACTG
gi|4 : ATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATAG-----------TTCCTTGCA---------AAATGTAGAATTCGCACATACGACGCCATTTTGAA--AAAA-AAACATT-GACAGGT-TTATACTTTTTCACAAACTT-tctcatccaaccaggtctcttaaaaaatgctaaggctacaaatctaaatttggaggttaaaagtctcacttctgttaacttcggtaaaatagaccttacatcgaaatgtataaaatgatgacctttgcgattaaagaagttaaaattatgacacgattgtgaaaaaagcatatgaccatcttgtcacattgggtggtcggcttctcggaaagaactgttctactcatcaggtaaattggtaacaatcttacatatca
gi|3 : ATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATAG-----------TTCCTTGCA---------AAATGTAGAATTCGCACAAACGACGCCATTTTGAAAAAAAA-AAACATT-GACAGGT-TTATACTTTTTCACAAACTT-cggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactagtgcagggctgacagagaca
gi|2 : ATTT-CCAAAGAGCTCATTAACTACTGACAACATAATAAATTTTTC---ATTGAC-CC--CTTTTTGAAATAATCAATTTGTTGTTCTTTGGA---------AAATGTAGAATTTGCACTT---ATGCCATTTTA----AAAA-TAACA-TTGACAGAT-TTAAAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACCATGAGGTCTCTGAAAAAA-CTAAGGCTGCAAAT-CTAAATTTGGAGGTTAAGAGTCTC--ATTTCTGTcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactggtgcagggctgacagagacat
gi|8 : ATCTACCAATGAGCTCATTAATTACTGGCATCATAATATATTTTTCCACATTGAC-CC--CGTTTCGAAA-AATGAATTTGTTATTCCTTGCAGAGTGTAGAAAATGTAGAATCCACACTTGCGATGCCATTTTA----AAAA-TAACA-TTGACTGGT-TTATAACTTTTCACAAACTC-TAAGAAACCGACTCATCCAACCT---GGTCTCGGTAAGAAACTAAGGTTTCAAAT-CTAAATTTTGAGGTT-AAAGTCTC--ttactttggtaaaagaaatcttgctttaaaatgtataaaatgaagacctttgcgattaaagcagtaaaaatcttaacacaattctgaaaaaagcacttgactatcttgtggatgactggcttcttggaaagatatgttcaacttatcactttggttaaaaggtaaactggtaaaagaacagttttgacatgaaagtgtttatgttgttgataaagaacatctgaaatattggcaaagtttttatgaacccaggaacgacagatgatgcacttcagaaccacatggtttttgtttactgtcttgcaacacaaagagcacatatctgcggatgattcagatgttactggtcctgggttgacagagaca
gi|12 : ATTTACCAATGAGCTTACTAACTACTCGCATCATAATATATTTGTCCACATTGAC-TC--TGTTTCGAAAAAATCAATTTGTTATTCCTTGCA---------AAGTGTAGAATTTGCACTTGCGACGCCATTTTA----AAAA-TAACATT-GACTGGA-TT----------ACAAACTTGTATGTAACTGACTTAATCAATC
gi|13 : ATTTACTAATGAACTCATTTACTATAAGCATCATAATATATTATTCCACATTGGC-TCCGTGTTTCGAAGTAATCAATTTG---TTCCTTGCA---------AAATGTATAAT------TTGC-------------------A-TA------GACTGGT-TTGTATATTCTAACAAACTT-TAAG
gi|14 : ATTTACCAATGTGCTCATTTACTACTGTCATCAGAATACATTTTTCCACATTGAC-TCTGTGTTTCGAAATAA
gi|16 : ATTTACCAATGAGATCATTAGCTACTGGCATC---ATGTATTTTTCGGCATTGAC-CC--TATTTTGAAATacgatttctgtgaaaa
gi|18 : ATTTACCAATGAGGTCATTTACTACTGGCACTATAATATATTT
gi|11 : TTTACCAATGAGCTCATTAACTACTGGCATCATAACATACTTTTCCACATTGAC-CT--TATTTCGGAATAATCAATTTGTTATTCCTTGCA---------AAATGTAGGATTAGCACTTGCGACGCCATTTTA----AAAA-CGACATT-GGCTGGT-TTATAACTTTTCAAAAACTT-TAAGAAACTGACTCATCCAAac
gi|17 : TTTACCAATGAGGTCATTTACTACTGGCACTATAATATGTTTTTCCACATTTACTCC--CGT
gi|10 : AATTAGCTCATTTACTACTGGCATCATTATATAGTTTTCAACAGTGAC-TCCGTGTTTAGAAACAATCAATTTGTTGTGCCTTGCA---------AAATGTAGAATTCACACTTGCGACTCCATTTTG----AAAA-TAACATT-GACTGGTCTTACAATGTTTCACAAATTT-TAAGgtt
gi|6 : TTTTAAAAACTA-AAAGTAACTGTCTCATCCAACCA---GG--TCT--------CTTAAA----AAATGCTAA-------GGCTACAAATCTA--AATT-TG-----GA---GGTTAAA----A---GTCTC-ACTTCT----GTTAACTTCGGTAAAATAGACCTTACATCGAAATGTATAAAATGATGACCTTTGCGATTAAA-GAAGTTA-AAATTATGACACGATTGTGAAAAAAGCATATGACCATCTTGTCACAT--TGGGTGGTCGGCTTCTCGGAAAGAACTGTTCTACTCATC------------AGGTAAATTGGT-----AACAATCTT-ACATATggtaagtaaaagcaaaaatacaataa
gi|9 : gattgaccaatgagctcattaactactggcatcataatatttttccacattgaccctgtttcaaaacaatcagtttgatgttccttgaaaaatgtagaattcgcacatgcgacgccaTAACTGACTCATCCAACCA---GGTCTCTGAAAA-------AGCTA----------------AGGCTGCAAATCTCTAACTTTGG--AG-G--TTAA--ACGTTTCATTT----------CT----GCTAACTTCGGTAAAAGAGATCTTACATTAAAATGTAAAAATTGAAGACCTTTGGGATTAAA-GCAGTTA-AAATCATAACACAATTTTG-AAAAAGCACTTGAC-----Tca
gi|5 : CTCTGAAAAAG-CTAAGGCTGCAAAT-CTAAATTTGGAGGCTAAAAGCTTC--ACTTCTGTCAGTGACTTAATTACATTT-ATATGTCTCTGCTTCT----GTTAACTTTAGTAAAACAGATCTTACATCAAAATGTATAAAATGATGACCTTTGCTATCAAA-GAAGTTA-AAATCATGACATAATTTTGAAAAAAGCTTGTGAC-----TA--TCTT-GTGGATGATCTACTTGTTAGAGAGAAACGTT---CT--TCACTTTGATTAAAAGATGAACTGGTCAAAGAATACTTTTGACATGAATGTAAAATCAAAA---TCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACACCCGAAATATTGGCACAGTTTTTATGAACCAACAAACGACAGTTGATGTACTTCAAAACCCGGTGAATTTTGTTGACCGTCTTGCAGCATCATGATCATATATTTTAGGATAACTatcttgtaaga
gi|7 : AGTGTT--ACTTCTGCCAATGACTATATTACATTT-ATATACCTCTGTTTCT----GTTTACTTCGGTAAAACAGATCTTAC-------------AAATGATGACCTTTGTGATTAAA-GCATTTA-AAATAATGGCACAATTCTGAAAAGAGCATGTGAC-----TA--TCTT-GTGGATGATCGACTTTTAGGAAAGAAATGTTCAACTCATCACTTTGGTTATAAGGTAAACTGGTAAAAGAACATGTTTGACATGCATGTAAAACCAAAAAA-TCACTTGTTTTACATAAGCGTATATGTTGTTGATAAAGATCATCTGAAATATTGGCACACTTTTTATGAACTCACAAACGACAGTTGATGCACTTCAGAACCCGGCGGATt
gi|15 : TTCTTCCAGTGACTCAATTACATTT-ATATGTCTCTGGTTCTACACATCCAATTCATTAAAATAAACTGTATATCA
gi|2 : GTCTC-ATTTCT----GTTTACTTTGGTAAAAGAAATCTTGCTTTAAAATGTATAAAATGAAGACCTTTGCGATT-AAAGCAGT-AAAAATCTTAACACAATTCTGAAAAAAGCACTTGAC-----TA--TCTT-GTGGATGACTGGCTTCTTGGAAAGATATGTTCAACTTATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACAGTTTTGACATG-----AAAGT--------------GTTT-------ATGTT------GTTGATAAAGAACATCTGAAATATTGGCAAAGTTTTTATGAACCCAGGAACGACAGATGATGCACTTCAGAACCACATGGTTTTTGTTTACTGTCTTGCAACACAAAGAGCACATATCTGCGGATGATTCcagt
gi|4 : atttccaaagagctcattaactactgacaacataataaatttttcattgacccctttttgaaataatcaatttgttgttctttggaaaatgtagaatttgcacttatgccattttaaaaataacattgacagatttaaaacttttcacaaactttaagtaactgactcatccaaccatgaggtctctgaaaaaactaaggctgcaaatctaaatttggaggttaagaAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATT-AAAGCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGAC-----T---ATGTTGTGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAA----------------AGAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCagatgttactggtcctgggttgacagagaca
gi|3 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacatacgacgccattttgaaaaaaaaacattgacaggtttatactttttcacaAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATT-AAAGCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGAC-----T---ATGTTGTGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAA----------------AGAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCgggtgtaactagtgcagggctgacagagaca
Alignments
lowQualScore : 11 111111111 1111 1111 1 1 11111111111 2 1 111111 3333 22222
lowQualScore : 0 3 22 666666666 1 0 4444 44 0 4 22 4 2222 3 44 1 3 3 2 1 77 2 7 7 7 0 0 4 66666666666 1 1 1 9 5 1 3 1 3 444444 1 4 5 0000 1 33333 999 1 4 1 1
lowQualScore : . . .. ......... . . .... .. . . .. . .... . .. . . . . . .. . . . . . . . ........... . . . . . . . . . ...... . . . .... . ..... ... . . . .
lowQualScore : 3 1 77 000000000 2 7 0000 11 7 4 88 0 7777 3 22 0 2 2 5 7 99 0 3 3 3 1 2 6 00000000000 0 0 6 4 0 0 2 0 9 444444 0 4 0 3333 0 77777 333 0 0 0 0
consensus : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAACTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTC--ACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
Reference ( family-1379 ) : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAACTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTC--ACTTCTGCCAGTGACTTAATTACATTTATATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATNATGACACAATTCTGAAAAAAGCACTTGACTANCGTG------TGGATGATCGACTTCTTGGAAAGAANTGTTCAACTTATCACTTTGGTTAAAAGGTAAACTGGT-AAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGATGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGNCTC
gi|1 : GATTTACCAATGAACTTACTAACTGCTGGCATCATAATATATTTTTCCACAATGAC-CC--TGTTTCGAAATAATAAATTTGTTTTTCTTTGCA---------AAATGGAGAATTCCTACTTGCGACGCCATTAT----GAAAA-TAACA-TGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---CGGTCTCTGAAAAAAACTCAAGCTGCAAATCTAAATTTGGAGGTTAAAAGTCTC--ACTTCTGTCAGTGACTTAATTACATTTATTTGTCTCTGCTTCT----GTTA---ACTTCTGTAAAACAGACATTACATCAAAATGTATAAAATAATGACCTTTGCGCTT--AATCAGTTAGAAATCATGACACAATTCTGAAAAAAGCATGTGACTGACATG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAGAGGTAAACTGGTAAAAGAACAATTTTGACATGTATGTAAAATCAAGAAATTCACTAGTTTTACATAAGTGTTTATGTTGTTGATAAACAACATCTGAAATATTGGCACACTTTTTATGAACCCACAAATGACAGTTGATGCACTTCGAAACTCGGTGGATTTTGTTGACCGTCTTGCAGCACAAAGTGCAAATATTTGAGGATGACTC
gi|10 : AATTAGCTCATTTACTACTGGCATCATTATATAGTTTTCAACAGTGAC-TCCGTGTTTAGAAACAATCAATTTGTTGTGCCTTGCA---------AAATGTAGAATTCACACTTGCGACTCCATTTT----GAAAA-TAACATTGACTGGTCTTACAATGTTTCACAAATTT-TAAG
gi|11 : TTTACCAATGAGCTCATTAACTACTGGCATCATAACATACTTTTCCACATTGAC-CT--TATTTCGGAATAATCAATTTGTTATTCCTTGCA---------AAATGTAGGATTAGCACTTGCGACGCCATTTT----AAAAA-CGACATTGGCTGGT-TTATAACTTTTCAAAAACTT-TAAGAAACTGACTCATCCAAggtaagtaaaagcaaaaatacaataa
gi|12 : ATTTACCAATGAGCTTACTAACTACTCGCATCATAATATATTTGTCCACATTGAC-TC--TGTTTCGAAAAAATCAATTTGTTATTCCTTGCA---------AAGTGTAGAATTTGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGA-TT----------ACAAACTTGTATGTAACTGACTTAATCAATC---
gi|13 : ATTTACTAATGAACTCATTTACTATAAGCATCATAATATATTATTCCACATTGGC-TCCGTGTTTCGAAGTAATCAAT---TTGTTCCTTGCA---------AAATGTATAATTTGCA---------------T----AGA------------CTGGT-TTGTATATTCTAACAAACTT-TAAG
gi|14 : ATTTACCAATGTGCTCATTTACTACTGTCATCAGAATACATTTTTCCACATTGAC-TCTGTGTTTCGAAATAAACGATTT
gi|15 : TTCTTCCAGTGACTCAATTACATTTATATGTCTCTGGTTCTACACATCC---AATTCATTAAAATAAACTGTATATCActgtgaaaa
gi|16 : ATTTACCAATGAGATCATTAGCTACTGGCATC---ATGTATTTTTCGGCATTGAC-CC--TATTTTGAAATcagt
gi|17 : TTTACCAATGAGGTCATTTACTACTGGCACTATAATATGTTTTTCCACATTTACTCC--CGT
gi|18 : ATTTACCAATGAGGTCATTTACTACTGGCACTATAATATATTTgtt
gi|2 : ATTT-CCAAAGAGCTCATTAACTACTGACAACATAATAAATTTTTC---ATTGAC-CC--CTTTTTGAAATAATCAATTTGTTGTTCTTTGGA---------AAATGTAGAATTTGCACTT---ATGCCATTTT----AAAAA-TAACATTGACAGAT-TTAAAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACCATGAGGTCTCTG-AAAAAACTAAGGCTGCAAATCTAAATTTGGAGGTTAAGAGTCTC--ATTTCTGac
gi|2 : GTCTC-ATTTCT----GTTT---ACTTTGGTAAAAGAAATCTTGCTTTAAAATGTATAAAATGAAGACCTTTGCGATTAAA-GCAGTAA-AAATCTTAACACAATTCTGAAAAAAGCACTTGACTATCTTG------TGGATGACTGGCTTCTTGGAAAGATATGTTCAACTTATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACAGTTTTGACATG-----AAAGT--------------GTTT---AT----GTT------GTTGATAAAGAACATCTGAAATATTGGCAAAGTTTTTATGAACCCAGGAACGACAGATGATGCACTTCAGAACCACATGGTTTTTGTTTACTGTCTTGCAACACAAAGAGCACATATCTGCGGATGATTCtttactttggtaaaagaaatcttgctttaaaatgtataaaatgaagacctttgcgattaaagcagtaaaaatcttaacacaattctgaaaaaagcacttgactatcttgtggatgactggcttcttggaaagatatgttcaacttatcactttggttaaaaggtaaactggtaaaagaacagttttgacatgaaagtgtttatgttgttgataaagaacatctgaaatattggcaaagtttttatgaacccaggaacgacagatgatgcacttcagaaccacatggtttttgtttactgtcttgcaacacaaagagcacatatctgcggatgattcagatgttactggtcctgggttgacagagaca
gi|3 : atttccaaagagctcattaactactgacaacataataaatttttcattgacccctttttgaaataatcaatttgttgttctttggaaaatgtagaatttgcacttatgccattttaaaaataacattgacagatttaaaacttttcacaaactttaagtaactgactcatccaaccatgaggtctctgaaaaaactaaggctgcaaatctaaatttggaggttaagaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACAAACGACGCCATTTTGAAAAAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-agatgttactggtcctgggttgacagagaca
gi|3 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAA-GCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactggtgcagggctgacagagacat
gi|4 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacaaacgacgccattttgaaaaaaaaaaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACATACGACGCCATTTTGA--AAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-gggtgtaactggtgcagggctgacagagacat
gi|4 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAA-GCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactagtgcagggctgacagagaca
gi|5 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacatacgacgccattttgaaaaaaaaCTCTG-AAAAAGCTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGCTTC--ACTTCTGTCAGTGACTTAATTACATTTATATGTCTCTGCTTCT----GTTA---ACTTTAGTAAAACAGATCTTACATCAAAATGTATAAAATGATGACCTTTGCTATC-AAAGAAGTTA-AAATCATGACATAATTTTGAAAAAAGCTTGTGACTATCTTG------TGGATGATCTACTTGTTAGAGAGAAACGTT---CT--TCACTTTGATTAAAAGATGAACTGGTCAAAGAATACTTTTGACATGAATGTAAAATCAAAA---TCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACACCCGAAATATTGGCACAGTTTTTATGAACCAACAAACGACAGTTGATGTACTTCAAAACCCGGTGAATTTTGTTGACCGTCTTGCAGCATCATGATCATATATTTTAGGATAACTgggtgtaactagtgcagggctgacagagaca
gi|6 : GATTGACCAATGAGCTCATTAACTACTGGCATCATAATAT--TTTTCCACATTGAC-CC--TGTTTCAAAACAATCAGTTTGATGTTCCTTGAA---------AAATGTAGAATTCGCACATGCGACGCCATTTT----AAAAACTAAAAGTAACTGt
gi|6 : TTTTAAAAACTA-AAAGTAACTGTCTCATCCAACC---AGGTCTCTT-AAAAAA-------TGC-----TAA-------GGCTACAAATCTA--AATTTGG--AG-G--TTAA----------AAGTCTC-ACTTCT----GTTA---ACTTCGGTAAAATAGACCTTACATCGAAATGTATAAAATGATGACCTTTGCGATT-AAAGAAGTTA-AAATTATGACACGATTGTGAAAAAAGCATATGACCATCTTGTCACATTGGGTGGTCGGCTTCTCGGAAAGAACTGTTCTACTCATC------------AGGTAAATTGGT-----AACAATCTT-ACATATtctcatccaaccaggtctcttaaaaaatgctaaggctacaaatctaaatttggaggttaaaagtctcacttctgttaacttcggtaaaatagaccttacatcgaaatgtataaaatgatgacctttgcgattaaagaagttaaaattatgacacgattgtgaaaaaagcatatgaccatcttgtcacattgggtggtcggcttctcggaaagaactgttctactcatcaggtaaattggtaacaatcttacatatca
gi|7 : gattgaccaatgagctcattaactactggcatcataatatttttccacattgaccctgtttcaaaacaatcagtttgatgttccttgaaaaatgtagaattcgcacatgcgacgccaAGTGTT--ACTTCTGCCAATGACTATATTACATTTATATACCTCTGTTTCT----GTTT---ACTTCGGTAAAACAGATCTTAC-------------AAATGATGACCTTTGTGATT-AAAGCATTTA-AAATAATGGCACAATTCTGAAAAGAGCATGTGACTATCTTG------TGGATGATCGACTTTTAGGAAAGAAATGTTCAACTCATCACTTTGGTTATAAGGTAAACTGGTAAAAGAACATGTTTGACATGCATGTAAAACCAAAAAA-TCACTTGTTTTACATAAGCGTATATGTTGTTGATAAAGATCATCTGAAATATTGGCACACTTTTTATGAACTCACAAACGACAGTTGATGCACTTCAGAACCCGGCGGATca
gi|8 : ATCTACCAATGAGCTCATTAATTACTGGCATCATAATATATTTTTCCACATTGAC-CC--CGTTTCGAAA-AATGAATTTGTTATTCCTTGCAGAGTGTAGAAAATGTAGAATCCACACTTGCGATGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTC-TAAGAAACCGACTCATCCAACC---TGGTCTCGGTAAGAAACTAAGGTTTCAAATCTAAATTTTGAGGTT-AAAGTCTC--
gi|9 : TAACTGACTCATCCAACC---AGGTCTCTG-AAAAAGCTA---------------------AGGCTGCAAATCTCTAACTTTGG--AG-G--TTAA--ACGTTT-CAT--------TTCT----GCTA---ACTTCGGTAAAAGAGATCTTACATTAAAATGTAAAAATTGAAGACCTTTGGGATT-AAAGCAGTTA-AAATCATAACACAATTTTG-AAAAAGCACTTGACTATCTTG------T
Alignments
lowQualScore : 11 111111111 1111 1111 1 11111111111 1111 111111 1111 22222
lowQualScore : 0 3 22 666666666 1 0 4444 44 4 22 4 2222 6 6 3 6 1 2 7 7 7 11 0 4 66666666666 1 1 6666 5 1 4 444444 1 4 5 2222 1 33333 999 1 1 1 1
lowQualScore : . . .. ......... . . .... .. . .. . .... . . . . . . . . . .. . . ........... . . .... . . . ...... . . . .... . ..... ... . . . .
lowQualScore : 3 1 77 000000000 2 7 0000 11 4 88 0 7777 7 7 2 7 7 0 3 3 3 22 2 6 00000000000 0 0 0000 0 4 5 444444 3 0 0 1111 0 77777 333 0 0 0 4
consensus : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
Reference ( family-1379 ) : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
gi|1 : GATTTACCAATGAACTTACTAACTGCTGGCATCATAATATATTTTTCCACAATGAC-CC--TGTTTCGAAATAATAAATTTGTTTTTCTTTGCA---------AAATGGAGAATTCCTACTTGCGACGCCATTAT----GAAAA-TAACAT-GACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---CGGTCTCTG-AAAAAAACTCAAGCTGCAAATCTAAATTTGGAGGTTAAAAGTCTCACTTCTGTCAGTGACTTAATTACATTTATTTGTCTCTGCTTCT----GTTA---ACTTCTGTAAAACAGACATTACATCAAAATGTATAAAATAATGACCTTTGCGCTTAA--TCAGTTAGAAATCATGACACAATTCTGAAAAAAGCATGTGACTGACATG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAGAGGTAAACTGGTAAAAGAACAATTTTGACATGTATGTAAAATCAAGAAATTCACTAGTTTTACATAAGTGTTTATGTTGTTGATAAACAACATCTGAAATATTGGCACACTTTTTATGAACCCACAAATGACAGTTGATGCACTTCGAAACTCGGTGGATTTTGTTGACCGTCTTGCAGCACAAAGTGCAAATATTTGAGGATGACTC
gi|10 : AATTAGCTCATTTACTACTGGCATCATTATATAGTTTTCAACAGTGAC-TCCGTGTTTAGAAACAATCAATTTGTTGTGCCTTGCA---------AAATGTAGAATTCACACTTGCGACTCCATTTT----GAAAA-TAACATTGACTGGTCTTACAATGTTTCACAAATTT-TAAG
gi|11 : TTTACCAATGAGCTCATTAACTACTGGCATCATAACATACTTTTCCACATTGAC-CT--TATTTCGGAATAATCAATTTGTTATTCCTTGCA---------AAATGTAGGATTAGCACTTGCGACGCCATTTT----AAAAA-CGACATTGGCTGGT-TTATAACTTTTCAAAAACTT-TAAGAAACTGACTCATCCAAggtaagtaaaagcaaaaatacaataa
gi|12 : ATTTACCAATGAGCTTACTAACTACTCGCATCATAATATATTTGTCCACATTGAC-TC--TGTTTCGAAAAAATCAATTTGTTATTCCTTGCA---------AAGTGTAGAATTTGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGA-TT----------ACAAACTTGTATGTAACTGACTTAATCAATC---
gi|13 : ATTTACTAATGAACTCATTTACTATAAGCATCATAATATATTATTCCACATTGGC-TCCGTGTTTCGAAGTAATCAAT---TTGTTCCTTGCA---------AAATGTATAATTTGCA---------------T----AGA------------CTGGT-TTGTATATTCTAACAAACTT-TAAG
gi|14 : ATTTACCAATGTGCTCATTTACTACTGTCATCAGAATACATTTTTCCACATTGAC-TCTGTGTTTCGAAATAAACGATTT
gi|15 : TTCTTCCAGTGACTCAATTACATTTATATGTCTCTGGTTCTACACATCC---AATTCATTAAAATAAACTGTATATCActgtgaaaa
gi|16 : ATTTACCAATGAGATCATTAGCTACTGGCATC---ATGTATTTTTCGGCATTGAC-CC--TATTTTGAAATcagt
gi|17 : TTTACCAATGAGGTCATTTACTACTGGCACTATAATATGTTTTTCCACATTTACTCC--CGT
gi|18 : ATTTACCAATGAGGTCATTTACTACTGGCACTATAATATATTTgtt
gi|2 : ATTT-CCAAAGAGCTCATTAACTACTGACAACATAATAAATTTTTC---ATTGAC-CC--CTTTTTGAAATAATCAATTTGTTGTTCTTTGGA---------AAATGTAGAATTTGCACTT---ATGCCATTTT----AAAAA-TAACATTGACAGAT-TTAAAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACCATGAGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGTTAAGAGTCTCATTTCTGac
gi|2 : GTCTC-ATTTCT----GTTT---ACTTTGGTAAAAGAAATCTTGCTTTAAAATGTATAAAATGAAGACCTTTGCGATTAAA-GCAGTAA-AAATCTTAACACAATTCTGAAAAAAGCACTTGACTATCTTG------TGGATGACTGGCTTCTTGGAAAGATATGTTCAACTTATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACAGTTTTGACATG-----AAAGT--------------GTTT---AT----GTT------GTTGATAAAGAACATCTGAAATATTGGCAAAGTTTTTATGAACCCAGGAACGACAGATGATGCACTTCAGAACCACATGGTTTTTGTTTACTGTCTTGCAACACAAAGAGCACATATCTGCGGATGATTCtttactttggtaaaagaaatcttgctttaaaatgtataaaatgaagacctttgcgattaaagcagtaaaaatcttaacacaattctgaaaaaagcacttgactatcttgtggatgactggcttcttggaaagatatgttcaacttatcactttggttaaaaggtaaactggtaaaagaacagttttgacatgaaagtgtttatgttgttgataaagaacatctgaaatattggcaaagtttttatgaacccaggaacgacagatgatgcacttcagaaccacatggtttttgtttactgtcttgcaacacaaagagcacatatctgcggatgattcagatgttactggtcctgggttgacagagaca
gi|3 : atttccaaagagctcattaactactgacaacataataaatttttcattgacccctttttgaaataatcaatttgttgttctttggaaaatgtagaatttgcacttatgccattttaaaaataacattgacagatttaaaacttttcacaaactttaagtaactgactcatccaaccatgaggtctctgaaaaaactaaggctgcaaatctaaatttggaggttaagaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACAAACGACGCCATTTTGAAAAAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-agatgttactggtcctgggttgacagagaca
gi|3 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAA-GCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactggtgcagggctgacagagacat
gi|4 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacaaacgacgccattttgaaaaaaaaaaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACATACGACGCCATTTTGA--AAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-gggtgtaactggtgcagggctgacagagacat
gi|4 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAA-GCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactagtgcagggctgacagagaca
gi|5 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacatacgacgccattttgaaaaaaaaCTCTG-AAAAAG-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGCTTCACTTCTGTCAGTGACTTAATTACATTTATATGTCTCTGCTTCT----GTTA---ACTTTAGTAAAACAGATCTTACATCAAAATGTATAAAATGATGACCTTTGCTATC-AAAGAAGTTA-AAATCATGACATAATTTTGAAAAAAGCTTGTGACTATCTTG------TGGATGATCTACTTGTTAGAGAGAAACGTT---CT--TCACTTTGATTAAAAGATGAACTGGTCAAAGAATACTTTTGACATGAATGTAAAATCAAAA---TCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACACCCGAAATATTGGCACAGTTTTTATGAACCAACAAACGACAGTTGATGTACTTCAAAACCCGGTGAATTTTGTTGACCGTCTTGCAGCATCATGATCATATATTTTAGGATAACTgggtgtaactagtgcagggctgacagagaca
gi|6 : GATTGACCAATGAGCTCATTAACTACTGGCATCATAATAT--TTTTCCACATTGAC-CC--TGTTTCAAAACAATCAGTTTGATGTTCCTTGAA---------AAATGTAGAATTCGCACATGCGACGCCATTTT----AAAAACTAAAAGTAACTGt
gi|6 : TTTTAAAAACTA-AAAGTAACTGTCTCATCCAACC---AGGTCTCTT-AAAAAA--------TGC-----TAA-------GGCTACAAATCTAAATTTGG--AG-G--TTAA----------AAGTCTC-ACTTCT----GTTA---ACTTCGGTAAAATAGACCTTACATCGAAATGTATAAAATGATGACCTTTGCGATT-AAAGAAGTTA-AAATTATGACACGATTGTGAAAAAAGCATATGACCATCTTGTCACATTGGGTGGTCGGCTTCTCGGAAAGAACTGTTCTACTCATC------------AGGTAAATTGGT-----AACAATCTT-ACATATtctcatccaaccaggtctcttaaaaaatgctaaggctacaaatctaaatttggaggttaaaagtctcacttctgttaacttcggtaaaatagaccttacatcgaaatgtataaaatgatgacctttgcgattaaagaagttaaaattatgacacgattgtgaaaaaagcatatgaccatcttgtcacattgggtggtcggcttctcggaaagaactgttctactcatcaggtaaattggtaacaatcttacatatca
gi|7 : gattgaccaatgagctcattaactactggcatcataatatttttccacattgaccctgtttcaaaacaatcagtttgatgttccttgaaaaatgtagaattcgcacatgcgacgccaAGTGTTACTTCTGCCAATGACTATATTACATTTATATACCTCTGTTTCT----GTTT---ACTTCGGTAAAACAGATCTTAC-------------AAATGATGACCTTTGTGATT-AAAGCATTTA-AAATAATGGCACAATTCTGAAAAGAGCATGTGACTATCTTG------TGGATGATCGACTTTTAGGAAAGAAATGTTCAACTCATCACTTTGGTTATAAGGTAAACTGGTAAAAGAACATGTTTGACATGCATGTAAAACCAAAAAA-TCACTTGTTTTACATAAGCGTATATGTTGTTGATAAAGATCATCTGAAATATTGGCACACTTTTTATGAACTCACAAACGACAGTTGATGCACTTCAGAACCCGGCGGATca
gi|8 : ATCTACCAATGAGCTCATTAATTACTGGCATCATAATATATTTTTCCACATTGAC-CC--CGTTTCGAAA-AATGAATTTGTTATTCCTTGCAGAGTGTAGAAAATGTAGAATCCACACTTGCGATGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTC-TAAGAAACCGACTCATCCAACC---TGGTCTCGGTAAGAAA-CTAAGGTTTCAAATCTAAATTTTGAGGTT-AAAGTCTC
gi|9 : TAACTGACTCATCCAACC---AGGTCTCTG-AAAAAG-CTAAGGCTGCA------AATCT-----CTAA--------CTTTGG--AG-G--TTAA--ACGTTT-CAT--------TTCT----GCTA---ACTTCGGTAAAAGAGATCTTACATTAAAATGTAAAAATTGAAGACCTTTGGGATT-AAAGCAGTTA-AAATCATAACACAATTTTG-AAAAAGCACTTGACTATCTTG------T
Alignments
lowQualScore : 11 111111111 1111 1111 1 11111111111 1111 111111 1111 22222
lowQualScore : 0 3 22 666666666 1 0 4444 44 4 22 4 2222 6 6 3 6 1 2 7 7 7 11 0 4 66666666666 1 1 6666 5 1 4 444444 1 4 5 2222 1 33333 999 1 1 1 1
lowQualScore : . . .. ......... . . .... .. . .. . .... . . . . . . . . . .. . . ........... . . .... . . . ...... . . . .... . ..... ... . . . .
lowQualScore : 3 1 77 000000000 2 7 0000 11 4 88 0 7777 7 7 2 7 7 0 3 3 3 22 2 6 00000000000 0 0 0000 0 4 5 444444 3 0 0 1111 0 77777 333 0 0 0 4
consensus : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
Reference ( family-1379 ) : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
gi|1 : GATTTACCAATGAACTTACTAACTGCTGGCATCATAATATATTTTTCCACAATGAC-CC--TGTTTCGAAATAATAAATTTGTTTTTCTTTGCA---------AAATGGAGAATTCCTACTTGCGACGCCATTAT----GAAAA-TAACAT-GACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---CGGTCTCTG-AAAAAAACTCAAGCTGCAAATCTAAATTTGGAGGTTAAAAGTCTCACTTCTGTCAGTGACTTAATTACATTTATTTGTCTCTGCTTCT----GTTA---ACTTCTGTAAAACAGACATTACATCAAAATGTATAAAATAATGACCTTTGCGCTTAA--TCAGTTAGAAATCATGACACAATTCTGAAAAAAGCATGTGACTGACATG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAGAGGTAAACTGGTAAAAGAACAATTTTGACATGTATGTAAAATCAAGAAATTCACTAGTTTTACATAAGTGTTTATGTTGTTGATAAACAACATCTGAAATATTGGCACACTTTTTATGAACCCACAAATGACAGTTGATGCACTTCGAAACTCGGTGGATTTTGTTGACCGTCTTGCAGCACAAAGTGCAAATATTTGAGGATGACTC
gi|10 : AATTAGCTCATTTACTACTGGCATCATTATATAGTTTTCAACAGTGAC-TCCGTGTTTAGAAACAATCAATTTGTTGTGCCTTGCA---------AAATGTAGAATTCACACTTGCGACTCCATTTT----GAAAA-TAACATTGACTGGTCTTACAATGTTTCACAAATTT-TAAG
gi|11 : TTTACCAATGAGCTCATTAACTACTGGCATCATAACATACTTTTCCACATTGAC-CT--TATTTCGGAATAATCAATTTGTTATTCCTTGCA---------AAATGTAGGATTAGCACTTGCGACGCCATTTT----AAAAA-CGACATTGGCTGGT-TTATAACTTTTCAAAAACTT-TAAGAAACTGACTCATCCAAggtaagtaaaagcaaaaatacaataa
gi|12 : ATTTACCAATGAGCTTACTAACTACTCGCATCATAATATATTTGTCCACATTGAC-TC--TGTTTCGAAAAAATCAATTTGTTATTCCTTGCA---------AAGTGTAGAATTTGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGA-TT----------ACAAACTTGTATGTAACTGACTTAATCAATC---
gi|13 : ATTTACTAATGAACTCATTTACTATAAGCATCATAATATATTATTCCACATTGGC-TCCGTGTTTCGAAGTAATCAAT---TTGTTCCTTGCA---------AAATGTATAATTTGCA---------------T----AGA------------CTGGT-TTGTATATTCTAACAAACTT-TAAG
gi|14 : ATTTACCAATGTGCTCATTTACTACTGTCATCAGAATACATTTTTCCACATTGAC-TCTGTGTTTCGAAATAAACGATTT
gi|15 : TTCTTCCAGTGACTCAATTACATTTATATGTCTCTGGTTCTACACATCC---AATTCATTAAAATAAACTGTATATCActgtgaaaa
gi|16 : ATTTACCAATGAGATCATTAGCTACTGGCATC---ATGTATTTTTCGGCATTGAC-CC--TATTTTGAAATcagt
gi|17 : TTTACCAATGAGGTCATTTACTACTGGCACTATAATATGTTTTTCCACATTTACTCC--CGT
gi|18 : ATTTACCAATGAGGTCATTTACTACTGGCACTATAATATATTTgtt
gi|2 : ATTT-CCAAAGAGCTCATTAACTACTGACAACATAATAAATTTTTC---ATTGAC-CC--CTTTTTGAAATAATCAATTTGTTGTTCTTTGGA---------AAATGTAGAATTTGCACTT---ATGCCATTTT----AAAAA-TAACATTGACAGAT-TTAAAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACCATGAGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGTTAAGAGTCTCATTTCTGac
gi|2 : GTCTC-ATTTCT----GTTT---ACTTTGGTAAAAGAAATCTTGCTTTAAAATGTATAAAATGAAGACCTTTGCGATTAAA-GCAGTAA-AAATCTTAACACAATTCTGAAAAAAGCACTTGACTATCTTG------TGGATGACTGGCTTCTTGGAAAGATATGTTCAACTTATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACAGTTTTGACATG-----AAAGT--------------GTTT---AT----GTT------GTTGATAAAGAACATCTGAAATATTGGCAAAGTTTTTATGAACCCAGGAACGACAGATGATGCACTTCAGAACCACATGGTTTTTGTTTACTGTCTTGCAACACAAAGAGCACATATCTGCGGATGATTCtttactttggtaaaagaaatcttgctttaaaatgtataaaatgaagacctttgcgattaaagcagtaaaaatcttaacacaattctgaaaaaagcacttgactatcttgtggatgactggcttcttggaaagatatgttcaacttatcactttggttaaaaggtaaactggtaaaagaacagttttgacatgaaagtgtttatgttgttgataaagaacatctgaaatattggcaaagtttttatgaacccaggaacgacagatgatgcacttcagaaccacatggtttttgtttactgtcttgcaacacaaagagcacatatctgcggatgattcagatgttactggtcctgggttgacagagaca
gi|3 : atttccaaagagctcattaactactgacaacataataaatttttcattgacccctttttgaaataatcaatttgttgttctttggaaaatgtagaatttgcacttatgccattttaaaaataacattgacagatttaaaacttttcacaaactttaagtaactgactcatccaaccatgaggtctctgaaaaaactaaggctgcaaatctaaatttggaggttaagaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACAAACGACGCCATTTTGAAAAAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-agatgttactggtcctgggttgacagagaca
gi|3 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAA-GCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactggtgcagggctgacagagacat
gi|4 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacaaacgacgccattttgaaaaaaaaaaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACATACGACGCCATTTTGA--AAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-gggtgtaactggtgcagggctgacagagacat
gi|4 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAA-GCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactagtgcagggctgacagagaca
gi|5 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacatacgacgccattttgaaaaaaaaCTCTG-AAAAAG-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGCTTCACTTCTGTCAGTGACTTAATTACATTTATATGTCTCTGCTTCT----GTTA---ACTTTAGTAAAACAGATCTTACATCAAAATGTATAAAATGATGACCTTTGCTATC-AAAGAAGTTA-AAATCATGACATAATTTTGAAAAAAGCTTGTGACTATCTTG------TGGATGATCTACTTGTTAGAGAGAAACGTT---CT--TCACTTTGATTAAAAGATGAACTGGTCAAAGAATACTTTTGACATGAATGTAAAATCAAAA---TCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACACCCGAAATATTGGCACAGTTTTTATGAACCAACAAACGACAGTTGATGTACTTCAAAACCCGGTGAATTTTGTTGACCGTCTTGCAGCATCATGATCATATATTTTAGGATAACTgggtgtaactagtgcagggctgacagagaca
gi|6 : GATTGACCAATGAGCTCATTAACTACTGGCATCATAATAT--TTTTCCACATTGAC-CC--TGTTTCAAAACAATCAGTTTGATGTTCCTTGAA---------AAATGTAGAATTCGCACATGCGACGCCATTTT----AAAAACTAAAAGTAACTGt
gi|6 : TTTTAAAAACTA-AAAGTAACTGTCTCATCCAACC---AGGTCTCTT-AAAAAA--------TGC-----TAA-------GGCTACAAATCTAAATTTGG--AG-G--TTAA----------AAGTCTC-ACTTCT----GTTA---ACTTCGGTAAAATAGACCTTACATCGAAATGTATAAAATGATGACCTTTGCGATT-AAAGAAGTTA-AAATTATGACACGATTGTGAAAAAAGCATATGACCATCTTGTCACATTGGGTGGTCGGCTTCTCGGAAAGAACTGTTCTACTCATC------------AGGTAAATTGGT-----AACAATCTT-ACATATtctcatccaaccaggtctcttaaaaaatgctaaggctacaaatctaaatttggaggttaaaagtctcacttctgttaacttcggtaaaatagaccttacatcgaaatgtataaaatgatgacctttgcgattaaagaagttaaaattatgacacgattgtgaaaaaagcatatgaccatcttgtcacattgggtggtcggcttctcggaaagaactgttctactcatcaggtaaattggtaacaatcttacatatca
gi|7 : gattgaccaatgagctcattaactactggcatcataatatttttccacattgaccctgtttcaaaacaatcagtttgatgttccttgaaaaatgtagaattcgcacatgcgacgccaAGTGTTACTTCTGCCAATGACTATATTACATTTATATACCTCTGTTTCT----GTTT---ACTTCGGTAAAACAGATCTTAC-------------AAATGATGACCTTTGTGATT-AAAGCATTTA-AAATAATGGCACAATTCTGAAAAGAGCATGTGACTATCTTG------TGGATGATCGACTTTTAGGAAAGAAATGTTCAACTCATCACTTTGGTTATAAGGTAAACTGGTAAAAGAACATGTTTGACATGCATGTAAAACCAAAAAA-TCACTTGTTTTACATAAGCGTATATGTTGTTGATAAAGATCATCTGAAATATTGGCACACTTTTTATGAACTCACAAACGACAGTTGATGCACTTCAGAACCCGGCGGATca
gi|8 : ATCTACCAATGAGCTCATTAATTACTGGCATCATAATATATTTTTCCACATTGAC-CC--CGTTTCGAAA-AATGAATTTGTTATTCCTTGCAGAGTGTAGAAAATGTAGAATCCACACTTGCGATGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTC-TAAGAAACCGACTCATCCAACC---TGGTCTCGGTAAGAAA-CTAAGGTTTCAAATCTAAATTTTGAGGTT-AAAGTCTC
gi|9 : TAACTGACTCATCCAACC---AGGTCTCTG-AAAAAG-CTAAGGCTGCA------AATCT-----CTAA--------CTTTGG--AG-G--TTAA--ACGTTT-CAT--------TTCT----GCTA---ACTTCGGTAAAAGAGATCTTACATTAAAATGTAAAAATTGAAGACCTTTGGGATT-AAAGCAGTTA-AAATCATAACACAATTTTG-AAAAAGCACTTGACTATCTTG------T
blockSeqs : T CG GAGTGTAGA T GAAA CT C AT G ATGA T . A G G C T A T AT T ACACATCC T A AAA . C T TCACAT A T A AAAA G AATGT AAT G A T A
blockSeqs : . CG . T GA T . AC . A . . A G A T T A T AC T TCACAA G A AAA . G T . C T A CAAA T CATGT AAT G A C T
blockSeqs : . TG . T . C . TA . T . . A T A C T A T AC T TCACAA G A AAA . G T . C T A AAAA T T AA G A C T
blockSeqs : . . . T . T . AC . A . . . . A . . . . AT T GTTT G T AAA . C G . A C A . C T . T T A A
blockSeqs : . . . A . T . CT . . . . . . . . . . AT T GTTA C T AAA . T A . C C . . A . . . T A
blockSeqs : . . . A . A . CT . C . GTTA T T AAA . A G . A . . . T
blockSeqs : . . . A . A . AC . . . GTTT C A AAA . C T .
blockSeqs : . . . T . T . . . . GCTA G
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqs : . .
blockSeqs : . .
blockSeqCons : AAA*
originalCons : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
finalCons : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAA-CTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAA-GCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
Alignments
lowQualScore : 11 111111111 1111 1111 1 1 11111111111 111111 1111 22222
lowQualScore : 0 3 22 666666666 1 0 4444 44 0 4 22 4 2222 3 3 6 1 2 7 7 7 11 0 4 66666666666 1 1 5 1 4 444444 1 4 5 2222 1 33333 999 1 1 1 1
lowQualScore : . . .. ......... . . .... .. . . .. . .... . . . . . . . . .. . . ........... . . . . . ...... . . . .... . ..... ... . . . .
lowQualScore : 3 1 77 000000000 2 7 0000 11 7 4 88 0 7777 3 2 7 7 0 3 3 3 22 2 6 00000000000 0 0 0 4 5 444444 3 0 0 1111 0 77777 333 0 0 0 4
consensus : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAACTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
Reference ( family-1379 ) : GATTTACCAATGAGCTCATTAACTACTGGCATCATAATATATTTTTCCACATTGAC-CC--TGTTTCGAAATAATCAATTTGTTGTTCCTTGCA---------AAATGTAGAATTCGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---AGGTCTCTG-AAAAAACTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGTCTCACTTCTGCCAGTGACTTAATTACATTTACATGTCTCTGCTTCT----GTTA---ACTTCGGTAAAANAGATCTTACATCAAAATGTATAAAATGANGACCTTTGCGATTAAAGCAGTTA-AAATCATGACACAATTCTGAAAAAAGCACGTGACTATCTTG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACANTCTTGACATGTATGTAAAATCAAGAAATTCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAACGACAGNTGATGCACTTCGAAACCCGGTGGNTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGACTC
gi|1 : GATTTACCAATGAACTTACTAACTGCTGGCATCATAATATATTTTTCCACAATGAC-CC--TGTTTCGAAATAATAAATTTGTTTTTCTTTGCA---------AAATGGAGAATTCCTACTTGCGACGCCATTAT----GAAAA-TAACA-TGACTGGT-TTATAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACC---CGGTCTCTGAAAAAAACTCAAGCTGCAAATCTAAATTTGGAGGTTAAAAGTCTCACTTCTGTCAGTGACTTAATTACATTTATTTGTCTCTGCTTCT----GTTA---ACTTCTGTAAAACAGACATTACATCAAAATGTATAAAATAATGACCTTTGCGCTT-AATCAGTTAGAAATCATGACACAATTCTGAAAAAAGCATGTGACTGACATG------TGGATGATCGGCTTCTTGGAAAGAAATGTTCAACTCATCACTTTGGTTAAGAGGTAAACTGGTAAAAGAACAATTTTGACATGTATGTAAAATCAAGAAATTCACTAGTTTTACATAAGTGTTTATGTTGTTGATAAACAACATCTGAAATATTGGCACACTTTTTATGAACCCACAAATGACAGTTGATGCACTTCGAAACTCGGTGGATTTTGTTGACCGTCTTGCAGCACAAAGTGCAAATATTTGAGGATGACTC
gi|10 : AATTAGCTCATTTACTACTGGCATCATTATATAGTTTTCAACAGTGAC-TCCGTGTTTAGAAACAATCAATTTGTTGTGCCTTGCA---------AAATGTAGAATTCACACTTGCGACTCCATTTT----GAAAA-TAACATTGACTGGTCTTACAATGTTTCACAAATTT-TAAG
gi|11 : TTTACCAATGAGCTCATTAACTACTGGCATCATAACATACTTTTCCACATTGAC-CT--TATTTCGGAATAATCAATTTGTTATTCCTTGCA---------AAATGTAGGATTAGCACTTGCGACGCCATTTT----AAAAA-CGACATTGGCTGGT-TTATAACTTTTCAAAAACTT-TAAGAAACTGACTCATCCAAggtaagtaaaagcaaaaatacaataa
gi|12 : ATTTACCAATGAGCTTACTAACTACTCGCATCATAATATATTTGTCCACATTGAC-TC--TGTTTCGAAAAAATCAATTTGTTATTCCTTGCA---------AAGTGTAGAATTTGCACTTGCGACGCCATTTT----AAAAA-TAACATTGACTGGA-TT----------ACAAACTTGTATGTAACTGACTTAATCAATC---
gi|13 : ATTTACTAATGAACTCATTTACTATAAGCATCATAATATATTATTCCACATTGGC-TCCGTGTTTCGAAGTAATCAAT---TTGTTCCTTGCA---------AAATGTATAATTTGCA---------------T----AGA------------CTGGT-TTGTATATTCTAACAAACTT-TAAG
gi|14 : ATTTACCAATGTGCTCATTTACTACTGTCATCAGAATACATTTTTCCACATTGAC-TCTGTGTTTCGAAATAAACGATTT
gi|15 : TTCTTCCAGTGACTCAATTACATTTATATGTCTCTGGTTCTACACATCC---AATTCATTAAAATAAACTGTATATCActgtgaaaa
gi|16 : ATTTACCAATGAGATCATTAGCTACTGGCATC---ATGTATTTTTCGGCATTGAC-CC--TATTTTGAAATcagt
gi|17 : TTTACCAATGAGGTCATTTACTACTGGCACTATAATATGTTTTTCCACATTTACTCC--CGT
gi|18 : ATTTACCAATGAGGTCATTTACTACTGGCACTATAATATATTTgtt
gi|2 : ATTT-CCAAAGAGCTCATTAACTACTGACAACATAATAAATTTTTC---ATTGAC-CC--CTTTTTGAAATAATCAATTTGTTGTTCTTTGGA---------AAATGTAGAATTTGCACTT---ATGCCATTTT----AAAAA-TAACATTGACAGAT-TTAAAACTTTTCACAAACTT-TAAGTAACTGACTCATCCAACCATGAGGTCTCTG-AAAAAACTAAGGCTGCAAATCTAAATTTGGAGGTTAAGAGTCTCATTTCTGac
gi|2 : GTCTC-ATTTCT----GTTT---ACTTTGGTAAAAGAAATCTTGCTTTAAAATGTATAAAATGAAGACCTTTGCGATTAAAGCAGTAA-AAATCTTAACACAATTCTGAAAAAAGCACTTGACTATCTTG------TGGATGACTGGCTTCTTGGAAAGATATGTTCAACTTATCACTTTGGTTAAAAGGTAAACTGGTAAAAGAACAGTTTTGACATG-----AAAGT--------------GTTT---AT----GTT------GTTGATAAAGAACATCTGAAATATTGGCAAAGTTTTTATGAACCCAGGAACGACAGATGATGCACTTCAGAACCACATGGTTTTTGTTTACTGTCTTGCAACACAAAGAGCACATATCTGCGGATGATTCtttactttggtaaaagaaatcttgctttaaaatgtataaaatgaagacctttgcgattaaagcagtaaaaatcttaacacaattctgaaaaaagcacttgactatcttgtggatgactggcttcttggaaagatatgttcaacttatcactttggttaaaaggtaaactggtaaaagaacagttttgacatgaaagtgtttatgttgttgataaagaacatctgaaatattggcaaagtttttatgaacccaggaacgacagatgatgcacttcagaaccacatggtttttgtttactgtcttgcaacacaaagagcacatatctgcggatgattcagatgttactggtcctgggttgacagagaca
gi|3 : atttccaaagagctcattaactactgacaacataataaatttttcattgacccctttttgaaataatcaatttgttgttctttggaaaatgtagaatttgcacttatgccattttaaaaataacattgacagatttaaaacttttcacaaactttaagtaactgactcatccaaccatgaggtctctgaaaaaactaaggctgcaaatctaaatttggaggttaagaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACAAACGACGCCATTTTGAAAAAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-agatgttactggtcctgggttgacagagaca
gi|3 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAAGCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactggtgcagggctgacagagacat
gi|4 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacaaacgacgccattttgaaaaaaaaaaATTAACCAATGAGATCATTAACTACTGACATTACAATTTATATTTCCACATTGAC-CC--TGTTTCGAAATA-----------GTTCCTTGCA---------AAATGTAGAATTCGCACATACGACGCCATTTTGA--AAAAA-AAACATTGACAGGT-TTATACTTTTTCACAAACTT-gggtgtaactggtgcagggctgacagagacat
gi|4 : ACATTGACAGGTTTATACTTTT-----TCACAAACTTCGGTGAATGAAGTCTTACATTAAAATATATAAAATGAAGACCTTTGCGATTAAAGCAGTTA-AAATGATAACTCAATTCTGAAAAAAGCACTTGACTATGTTG------TGGATGATCGACTTCTTGGAAAGAACTTTTCAACTTATCACTTTGGTTAAA----------------GAACATTCTTGACATGT----AAAATCAAGAAATTCACTGATTTTACATAAGCGTTTATGTTGTTGATAAAGAACATCTGAAATATTGGCACACTTTTTATGAACCCACGAATGACAGATGATGCACTTCGAAACCCAGTGGCTTTTGTTGACCGTCTTGCAGCACAAAGAGCACATATTTGAGGATGTCTCcggtgaatgaagtcttacattaaaatatataaaatgaagacctttgcgattaaagcagttaaaatgataactcaattctgaaaaaagcacttgactatgttgtggatgatcgacttcttggaaagaacttttcaacttatcactttggttaaagaacattcttgacatgtaaaatcaagaaattcactgattttacataagcgtttatgttgttgataaagaacatctgaaatattggcacactttttatgaacccacgaatgacagatgatgcacttcgaaacccagtggcttttgttgaccgtcttgcagcacaaagagcacatatttgaggatgtctcgggtgtaactagtgcagggctgacagagaca
gi|5 : attaaccaatgagatcattaactactgacattacaatttatatttccacattgaccctgtttcgaaatagttccttgcaaaatgtagaattcgcacatacgacgccattttgaaaaaaaaCTCTG-AAAAAGCTAAGGCTGCAAATCTAAATTTGGAGGCTAAAAGCTTCACTTCTGTCAGTGACTTAATTACATTTATATGTCTCTGCTTCT----GTTA---ACTTTAGTAAAACAGATCTTACATCAAAATGTATAAAATGATGACCTTTGCTATCAAAGAAGTTA-AAATCATGACATAATTTTGAAAAAAGCTTGTGACTATCTTG------TGGATGATCTACTTGTTAGAGAGAAACGTT---CT--TCACTTTGATTAAAAGATGAACTGGTCAAAGAATACTTTTGACATGAATGTAAAATCAAAA---TCACTGGTTTTACATAAGCGTTTATGTTGTTGATAAAGAACACCCGAAATATTGGCACAGTTTTTATGAACCAACAAACGACAGTTGATGTACTTCAAAACCCGGTGAATTTTGTTGACCGTCTTGCAGCATCATGATCATATATTTTAGGATAACTgggtgtaactagtgcagggctgacagagaca
gi|6 : GATTGACCAATGAGCTCATTAACTACTGGCATCATAATAT--TTTTCCACATTGAC-CC--TGTTTCAAAACAATCAGTTTGATGTTCCTTGAA---------AAATGTAGAATTCGCACATGCGACGCCATTTT----AAAAACTAAAAGTAACTGt
gi|6 : TTTTAAAAACTA-AAAGTAACTGTCTCATCCAACC---AGGTCTCTT-AAAAAA-------TGC-----TAA-------GGCTACAAATCTAAATTTGG--AG-G--TTAA----------AAGTCTC-ACTTCT----GTTA---ACTTCGGTAAAATAGACCTTACATCGAAATGTATAAAATGATGACCTTTGCGATTAAAGAAGTTA-AAATTATGACACGATTGTGAAAAAAGCATATGACCATCTTGTCACATTGGGTGGTCGGCTTCTCGGAAAGAACTGTTCTACTCATC------------AGGTAAATTGGT-----AACAATCTT-ACATATtctcatccaaccaggtctcttaaaaaatgctaaggctacaaatctaaatttggaggttaaaagtctcacttctgttaacttcggtaaaatagaccttacatcgaaatgtataaaatgatgacctttgcgattaaagaagttaaaattatgacacgattgtgaaaaaagcatatgaccatcttgtcacattgggtggtcggcttctcggaaagaactgttctactcatcaggtaaattggtaacaatcttacatatca
gi|7 : gattgaccaatgagctcattaactactggcatcataatatttttccacattgaccctgtttcaaaacaatcagtttgatgttccttgaaaaatgtagaattcgcacatgcgacgccaAGTGTTACTTCTGCCAATGACTATATTACATTTATATACCTCTGTTTCT----GTTT---ACTTCGGTAAAACAGATCTTAC-------------AAATGATGACCTTTGTGATTAAAGCATTTA-AAATAATGGCACAATTCTGAAAAGAGCATGTGACTATCTTG------TGGATGATCGACTTTTAGGAAAGAAATGTTCAACTCATCACTTTGGTTATAAGGTAAACTGGTAAAAGAACATGTTTGACATGCATGTAAAACCAAAAAA-TCACTTGTTTTACATAAGCGTATATGTTGTTGATAAAGATCATCTGAAATATTGGCACACTTTTTATGAACTCACAAACGACAGTTGATGCACTTCAGAACCCGGCGGATca
gi|8 : ATCTACCAATGAGCTCATTAATTACTGGCATCATAATATATTTTTCCACATTGAC-CC--CGTTTCGAAA-AATGAATTTGTTATTCCTTGCAGAGTGTAGAAAATGTAGAATCCACACTTGCGATGCCATTTT----AAAAA-TAACATTGACTGGT-TTATAACTTTTCACAAACTC-TAAGAAACCGACTCATCCAACC---TGGTCTCGGTAAGAAACTAAGGTTTCAAATCTAAATTTTGAGGTT-AAAGTCTC
gi|9 : TAACTGACTCATCCAACC---AGGTCTCTG-AAAAAGCTAAGGCTGCA------AATCT-----CTAA--------CTTTGG--AG-G--TTAA--ACGTTT-CAT--------TTCT----GCTA---ACTTCGGTAAAAGAGATCTTACATTAAAATGTAAAAATTGAAGACCTTTGGGATTAAAGCAGTTA-AAATCATAACACAATTTTG-AAAAAGCACTTGACTATCTTG------T