lowQualScore : 111111 1111111111111111111 11111111 333 666666666666666666666666666666666666666 1 1111 444444444444 11 44444444444444444444444 111 2222 2 888888888888888 444444444444444444444444 777777777 5555555555 33333 1 2 1 111 222
lowQualScore : 0 66 5 88 33 2 9 111111 9999999999999999999 1 2 1 2 0 5 3 3 66666666 44 3 6 333 3 4 5 666 3 66 6 77 1 111111111111111111111111111111111111111 1 6 4444 3 0 8 4 6 555555555555 11 33 99999999999999999999999 6 4 666 5555 7 3 999999999999999 6 666666666666666666666666 2 4 666666666 2 4 4 4 4 2 7 3333333333 6 33333 0 0 0 2 3 666 44 4 77 1 99 4 8 5 6 777 777
lowQualScore : . .. . .. .. . . ...... ................... . . . . . . . . ........ .. . . ... . . . ... . .. . .. . ....................................... . . .... . . . . . ............ .. .. ....................... . . ... .... . . ............... . ........................ . . ......... . . . . . . . .......... . ..... . . . . . ... .. . .. . .. . . . . ... ...
lowQualScore : 2 55 4 55 77 7 4 111111 1111111111111111111 6 9 4 7 7 7 8 3 66666666 66 3 7 555 1 1 2 444 6 77 6 99 1 999999999999999999999999999999999999999 4 0 8888 8 8 0 6 4 222222222222 55 88 55555555555555555555555 5 0 000 2222 3 3 000000000000000 7 000000000000000000000000 5 0 000000000 5 0 0 0 0 5 3 7777777777 7 33333 0 0 0 5 0 555 00 0 44 4 33 0 9 0 9 000 000
consensus : GTAGGACAAAACACCTCCC-GGACATAACACCTCACCC--TCATTTTTG-TATAGGCGGACA------AAA---C---------------ACCTCCCA-CGATTTTTACA-AGGCGGACAAAACNC-CTCCCGCAGA--TT--TTA-C-AAGGT-GGACAAAACACC-TCCCGCGAANT---TTACA-AGGTGGACATA--ACACCT-------A--ACA-----CAATAATA-------A-AA--TAACAGTAATGACAAAATAA-TTTTTAATATTTTATTA-AAGATCCGTATTTT--T----TTCATTACGTA--TG---TC--AT--CA-GTGC-----ATGNAAAAGAANAATAC-AATGGATGTACAGTTTGATGCTATTTA-TATTA------CAC-TG-ANATTTTNATTGTTTAC------ACTTNGGTTGTTTTGTAAACAATNAANATGCACAGGTGTNATAGTNGANAGCATCAAACTGTGCATCCNTTGTATTNTTCTTTTNCATGCACTGTCTTGACTT-------CATACATAAT-----TATGTGGATCTTT-AATAA-AGTGTNAAAANTNN-CTTTGTCTTACTGNTATTATAGAAAGGTTTATGTCCGGGAGGCGTTATGTCCACCTTGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAC-AAAAATGAGGGTGAGGTGTTAT---GTCCGGGAGGTGTTTTGTCCGTCACC
Reference ( gi|1 ) : GTAGGGCAAAACACCTCCT-GGACATAACACCTCATCC--TCATTTTTG-TATAGGAGGACA------AAA---C---------------ACCTCCCA-TGATTTTTACA-AGGCGGATAAAACCC-CTCCCGCAAA--TT--TTA-C-AAGA--GGACAAAACACC-TCCCGTGAAAT---TTACA-AGATGGACATA--ATACCT-------A--ATA-----CAATAA-A-------A-AA--TAACAGTAA-GACAAAGTAA-GTTTTAATATTTTATTA-AAGGTCCGTATTTT--T----TTTATTATGTA--TG---CC--AT--CA-GTAC-----ATGCAAAAGAAAAATAC-AATGAATTCACAGTTTGATGCTATTTACTATTA-GTATACACCTGTACATTTTCATTGTATAC------ACTTTGGTTGTTTTGTAAACAATCAATAT-------T-TCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAAT-----TATGTGGATCTTT-AA-AA-AGTGTGAAAAATGT-CTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAC-AAAAATGAGAGTGAGGGGCTAT---GTCCGGACAGTGTTTTGTCCGTCACC
gi|7 : GTAGGGCAAAACACCTCCC-GGATATAACAACTCACCC--TCATTTTTGGTATAGGAGGACA------AAA---C---------------ACCTCCCA-CGACTTTTACA-AGGTGGATAAAACCC-CTCCCGCAAA--TT--TTA-CAAAGA--GGATAAAACACC-TCCCGTGAAAC---TTACA-AGGTGGAC
gi|17 : GTAGGGCAAAACACCTCCC-GGACATAACACCTCACCC--TCATTTTTG-TAT
gi|18 : gtGTAGGGCAAAACACCTCCC-GGTTATAACACCTCACCC--TCATTTTTG-TA
gi|21 : gtGTAGGGCAAAACACCTCCC-GGACATAATAC
gi|14 : agtGTAGGACAAAATCTTCCCC-AGACA-AA-ATCTC--CC--CC----CTG-CTTAG----ACA------TAA---T---------------CTCTCCCA-TGGTTTTTACA-AGGCAGACGAA
gi|2 : agtGGACAAAACACCTCCC-GGACATAAACCCTCACCC--TCATTTTTG-TAT
gi|8 : ctaatacctaacatagtaaaaaaaataactgcaagacaaagtaaagttttaatatgttattaaagatccatatttttttattatgtatgccatcagtgcatgaaaaagaaaaatacaatgaatgcacagtttgatgctatttactatcacacctgtgcattttcattgtttacactttggttgttttgtaaacaatcaatatttcataattgaaaacatcaaactgtacatcttttgtattattcttttgcatgcattgtcttgacttcatacataattatgtggatctttaaaaaagtgtgaacaatgactttgtcttactgatattatagaaaggtttatgtctgggaggcattatgtccactatgtacatttcacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAAAACACCTCCC-GGACATAACCCCTCACCC--TCATTTTTG-TATAGGCGGACA------AAA---C---------------ACCTCCCA-CGAATTTTACA-AGGCGGACAAAACCC-CTCACTCAGA--TT--TTA-C-AAGGC-GGACAAAACACC-TCCCACGAATT---TTACA-AGGCGGACAgtcacc
gi|9 : atGGACAAAACACCTCCC-GTACATAACCCCTCACCC--TCATTTTTG-TATAGGAGGACA------AAA---C---------------ACCTCCCA-CGAATTTTACA-AGGCGGACAAAACCC-CTAACGCAGA--TT--TTA-CAAAGA--GGACAAAACACC-TCCAGCATATT---TTACA-AG
gi|6 : tgacGGACAAAACACCTCCC-GGACATAACACCTCACAC--TCAGTTTTG-TATACGAGGACA------AAAAA-C---------------ACCTCCCA-CGAATTTTACA-AGGCGGACAAAACAC-CTCATGCAGA--TT--TTG-C-AAGG--AGGCCAAACGCT-TCCCACGAATT---TTACATAGA-GGAgag
gi|11 : tgacGGACAAAACAACCCCC-GGACTAAACACCCCCCGC--TCATTTTTG-TATAGGTGGACA------AAA---C---------------ACCCCTAA-TCATTTTTACA-AGGTGGACAAAACAC-CCCCTATGGT--TT--TCA-C-AAGGT-GGACAAAACACC-aaaat
gi|3 : tatgggagccGGACAAAACACCCCCC-GGACTAAACACCCC--CCGATCATTTTTG-TATAGGTGGACATGATAAAAA---TGATGAGGGGTGTTTAACCCCTCA-TCATTTTTACA-AGATGGACAAAACAC-CCACTACGGT--TT--TTA-C-AAGGT-GGACAAAACACC-CCCTAAGGTTT---TTAAA-GGGTGGACAAAACACACCTTATCTAAA--ATACCTCCCAATAATG-------A-GG--TTACAATAATGACAAAAT-A-TTTTTAATG-TTAATTAGGAAGTTTTTATTGT--TGGAATTCCTTAATTAGCTG---TT--AT--CATGTATAACTGATATCATAGAATAAT----ATGAAT-----GGTTATTGCCAATTA-TATTATTTTTACACATAAAGCTTTTAATTG---AC------ATTTc
gi|4 : ggagccCCCCCTCGGACTAAACACCTCCCGC--TCATTTTTG-TATAGGTGGACA------AAA---C---------------ACCCCTCA-TCATTTTTACA-AGGTGGACAAAACAC-CCCC--TAAGGTTT--TTA---AAGGGTGGACAAAACAC---CCCTT--AAC---T---A-A---------A--ACACCT-----------CC-----CAATAATG-------A-GG--TTACAATAATGACAAAATAT-TTTTCAATATTTTA-------------ATTTTTAT----TTTATTACACA--TG---TTTAAT--T---TAC-----ACAGAAAATAAACATTCAAATGGATTTA-AGT
gi|10 : aaacacgcactttttttcataagttaacatgctcaaaataatgagtgtaggacaaccccccccccT-GGACA-AAAACATACTAC--TCAATTGTG-TGTAGGTGGAAA------AAATTAC---------------ACC----A-TG-TTTTAACA-TGATGGACAAATACC-ATCCC--AAA--TTGATTA-C-AAGGT-GGACAAAA-ACC-TCCC
gi|5 : g-GGGCAAAACACCTCACCC--TCATTTTCG-TATcatcaatttagaacaaaaggcacccca
gi|12 : aAACACCTCACCC--TCATTTTTG-TATAAGCGGACA------AAA---C---------------ACCTCCCA-TGAATTTTACA-AGGCGGACAAAACAC-CTCCCACGAA--TT--TTA-C-AAGGC-GGACAAAACACC-TCCCATGAATT---TTACA-AGGCGGACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaaataacagtaagacaaaaaaagtttaaatattttattaaagatccgtattg
gi|19 : AACACCTCACCC--TCATTTTTG-TAaa
gi|15 : gagtgtagggctaTAGGTGGACAA-----AAA---C---------------AC--CCAA-TGTTTTTAACA-TGGTGGACA
gi|11 : caatttcagGGACT------AAA---C---------------ACCCCCCGCTCATTTTTGTATAGGTGGACAAAACAC-CCCTAATCAT--TT--TTA-C-AAGGT-GGACAAAACACC-CCCTATGGTTT---TCACA-AGGTGGACAAA--ACACCgttccaatttttttactagacaggcaaaaatc
gi|16 : tatgggagccggacaaaacaacccccGGACA------AAA---C---------------CCCCTACA-TTGTTTTTA-A-TAGTGGACAAAACCCACTACAACAA----T--TAA-T-CAGATTGGACAAAACCCC-CCc
gi|20 : gacA------AAA---C---------------ACCTACCG-TGAAATTTACA-AGGTGGACA
gi|10 : -AGGTGGAAAAAATTA-CACC---ATG--TT--TTAAC-ATGAT-GGACA-AATACCATCCC---AAATTGATTACA-AGGTGGACA-A--AAACCT-------t
gi|20 : gtggacaaaaacatactactcaattgtgtgtAAAACACC-TACCGTGAAAT---TTACA-AGGTGGACATccccatcaatttagaacaaaaggcacccca
gi|2 : GTGAAAT---GTACA-TAGTGGACATA--ATGCCT-------CCCAGA-----CA-TAA-ACCTTTCTATAA--TATCAGTAA-GACAAAGTCA-TTGTTCACACTTTTTTA-AAGATCCACATA------------ATTATGTA--TGAAGTC--AAGACA-ATGC-----ATGCAAAAGAATAATAC-AAAAGATGTACAGTTTGATGTT-TTCA--ATTA----------TG-AAATATTGATTGTTTACAAAACAACCAAAG------TGTAAACAATGAAAATGCACAGGTGTGATAGTAAATAGCATCAAACTGTGCATTCATTGTATTTTTCTTTTTCATGCACTG--ATGGC----------ATACATAATAAAAAAATATGGATCTTT-AATAA-CATATTAAAACTTTACTTTGTCTTGCAGTTATT
gi|2 : ctaatacctaacatagtaaaaaaTA--ATACCT-------A--ACA-----TAGTAA-A-------A-AAAATAACTGCAA-GACAAAGTAAAGTTTTAATATGTTATTA-AAGATCCATATTTT--T----TT-ATTATGTA--TG---CC--AT--CA-GTGC-----ATGAAAAAGAAAAATAC-AATGAATGCACAGTTTGATGCTATTTACTATCA------CACCTGTGCATTTTCATTGTTTAC------ACTTTGGTTGTTTTGTAAACAATCAATAT-------T-TCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------CATACATAAT-----TATGTGGATCTTTAAA-AA-AGTGTGAACAATGA-CTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTACATTTCACannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaaaatgagggtgagggtttatgtccgggaggtgttttgtccgtcacc
gi|5 : cTA--ATACCT-------G--ATA-----TAATAA-A-------A-AA--TAACAGTAA-GACAAAAAAA-GTTTAAATATTTTATTA-AAGATCCGTATTannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaaaatgagggtgagggtttatgtccgggaggtgttttgtccgtcacc
gi|13 : agggcaaaacacctcaccctcattttcgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGTCTTGACTTATGATAATATA-ATAAT-----TATGTGGATCTTT-AA-AAAAGTGTGAAAAATGA-CTTTGTCT---TGATATTATAGAAAGGTTTATGT-------ACACTATGTACAg
gi|5 : ATACGGATCTTT-AATAA-AATATTTAAACTTT-TTTTGTCTTACTGTTATTg
gi|8 : agggcaaaacacctcaccctcattttcgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaAGGGGTTATGTCCGGGAGGTGTTTTGTCCAtg
gi|12 : aTGGGAGGTGTTTTGTCCGCCTTGTAAAATTCATGGcaccctcatttttgtataggcggacaaaacacctcccacgaattttacaaggcggacaaaacccctcactcagattttacaaggcggacaaaacacctcccacgaattttacaaggcggaca
gi|20 : aacacctcaccctcatttttgtataagcggacaaaacacctcATGTCCACCTTGTAAATTTCACGGcgaattttacaaggcggacaaaacacctcccatgaattttacaaggcggacaaa
gi|2 : aaaacacctaATAC-AAAAATGAGGGTGAGGGTTTAT---GTCCGGGAGGTGTTTTGTCCGTCACC
gi|7 : ctaatacctaacatagtaaaaaaaataactgcaagacaaagtaaagttttaatatgttattaaagatccatatttttttattatgtatgccatcagtgcatgaaaaagaaaaatacaatgaatgcacagtttgatgctatttactatcacacctgtgcattttcattgtttacactttggttgttttgtaaacaatcaatatttcataattgaaaacatcaaactgtacatcttttgtattattcttttgcatgcattgtcttgacttcatacataattatgtggatctttaaaaaagtgtgaacaatgactttgtcttactgatattatagaaaggtttatgtctgggaggcattatgtccactatgtacatttcacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATACCAAAAATGAGGGTGAGTTGTTAT---ATCCGGGAGGTGTTTTGCCC
gi|8 : gtaATAC-AAAAATGAGGGTGAGGGGTTAT---GTCCGGGAGGTGTTTTGTCCATaggaggacaaaacacctcccacgacttttacaaggtggataaaacccctcccgcaaattttacaaagaggataaaacacctcccgtgaaacttacaaggtggac
gi|9 : ATAC-AAAAATGAGGGTGAGGGGTTAT---GTACGGGAGGTGTTTTGTCCGTCAaggcggacaaaacacctcccacgaattttacaaggcggacaaaacccctcactcagattttacaaggcggacaaaacacctcccacgaattttacaaggcggaca
gi|6 : ATAC-AAAACTGAGTGTGAGGTGTTAT---GTCCGGGAGGTGTTTTGTCCGTCAaggaggacaaaacacctcccacgaattttacaaggcggacaaaacccctaacgcagattttacaaagaggacaaaacacctccagcatattttacaaggag
gi|11 : ATAC-AAAAATGAGCGGGGGGTGTTTA---GTCCGGGGGTTGTTTTGTCCGacgaggacaaaaaacacctcccacgaattttacaaggcggacaaaacacctcatgcagattttgcaaggaggccaaacgcttcccacgaattttacatagaggaaaaat
gi|3 : tatgggagcATAC-AAAAATGA---TCGGGGGGTGTTTAGTCCGGGGGGTGTTTTGTCCGaggtggacaaaacacccctaatcatttttacaaggtggacaaaacaccccctatggttttcacaaggtggacaaaacaccc
gi|5 : ggagcATAC-GAAAATGAGGGTGAGGTGTTTT---GCCCaggtggacatgataaaaatgatgaggggtgtttaacccctcatcatttttacaagatggacaaaacacccactacggtttttacaaggtggacaaaacaccccctaaggtttttaaagggtggacaaaacacaccttatctaaaatacctcccaataatgaggttacaataatgacaaaatatttttaatgttaattaggaagtttttattgttggaattccttaattagctgttatcatgtataactgatatcatagaataatatgaatggttattgccaattatattatttttacacataaagcttttaattgacattt
gi|17 : aATAC-AAAAATGAGGGTGAGGTGTTAT---GTCCGGGAGGTGTTTTGCCCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaaataacagtaagacaaaaaaagtttaaatattttattaaagatccgtattg
gi|18 : gtgtaTAC-AAAAATGAGGGTGAGGTGTTAT---AACCGGGAGGTGTTTTGCCC
Alignments
lowQualScore : 111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 333333333333333333 1 2 11 11 2222222 1 11 222222222222 2 1111 7777777777777777777777777 11 666666666 44444444 2 22 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11
lowQualScore : 9999999 5 2 2 5 888888 2 0000000000000000000 33 3 2 3 4 3 7 333 44 44 6 44 55 1 222222222222222222 0 5 8 1 0 0 33 0 0 11 8 3 6666666 0 44 33 6 999999999999 1 1 0 8888 2 7 2222222222222222222222222 1 55 1 1 1 111111111 1 6 1 1 6 6 77 1 1 6 44444444 6 4 1 1 22 7 1 6 6 33 3 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 77 3
lowQualScore : ....... . . . . ...... . ................... .. . . . . . . ... .. .. . .. .. . .................. . . . . . . .. . . .. . . ....... . .. .. . ............ . . . .... . . ......................... . .. . . . ......... . . . . . . .. . . . ........ . . . . .. . . . . .. . ............................................................................................................................................... .. .
lowQualScore : 3333333 4 7 7 8 222222 9 2222222222222222222 44 9 9 1 2 3 1 777 66 66 1 22 33 0 666666666666666666 6 8 0 4 4 8 44 8 8 00 6 2 0000000 5 55 88 5 888888888888 0 0 0 8888 5 3 0000000000000000000000000 0 00 0 0 0 000000000 0 0 0 0 0 0 00 0 0 0 00000000 7 7 0 0 00 3 0 0 0 00 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 55 0
consensus : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACC-TCCCACGATTT-TTACAAGGCGGACAAA-ACAC-CTCCCGCG-GATT--TTA--CAAGGCGGACAAAA--CACCTCCCGCGAATTTTACAAGGCGGACATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGGATNC--ACAGTTTGATGCTATTTACTAT-----TACA-C-TGTACA--TTTTCATTGT-TACACTTTGGTTGTTTTGTAAACAATCAATAT-------T-TCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
Reference ( family-1365 ) : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACC-TCCCACGATTT-TTACAAGGCGGACAAA-ACNC-CTCCCGCA-GATT--TTA--CAAGGTGGACAAAA--CACCTCCCGCGAANTTTACAAGGTGGACATAACAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-TTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTCATTACGTA--TGTCATCA-G--TGC-----ATGNAAAAGAANAATAC-AATGGATGT--ACAGTTTGATGCTATTTA-TAT-----TACA-C-TG-ANA--TTTTNATTGTTTACACTTNGGTTGTTTTGTAAACAATNAANATGCACAGGTGTNATAGTNGANAGCATCAAACTGTGCATCCNTTGTATTNTTCTTTTNCATGCACTGTCTTGACTT-------CATACATAATTATGTGGATCTTTAATAAAGTGTNAAAANTNNCTTTGTCTTACTGNTATTATAGAAAGGTTTATGTCCGGGAGGCGTTATGTCCACCTTGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGTGTTATGTCCGGGAGGTGTTTTGTCCGTCACC
gi|1 : GTAGGGCAAAACACCTCCT-------GGACATAACACCTCATC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACC-TCCCATGATTT-TTACAAGGCGGATAAA-ACCC-CTCCCGCA-AATT--TTA--CAAGA-GGACAAAA--CACCTCCCGTGAAATTTACAAGATGGACATAATAC-------CTAA-------TACAATAA-AAAA-TAACAGTAA-GACAAAGTAA-GTTTTAATATTTTATTA--AAGGTCCGTATTTT--T----TTTATTATGTA--TGCCATCA-G--TAC-----ATGCAAAAGAAAAATAC-AATGAATTC--ACAGTTTGATGCTATTTACTATTAGTATACACC-TGTACA--TTTTCATTGTATACACTTTGGTTGTTTTGTAAACAATCAATAT-------T-TCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAA-AAAGTGTGAAAAATGTCTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGAGTGAGGGGCTATGTCCGGACAGTGTTTTGTCCGTCACC
gi|10 : -------GGACA-AAAACAT-ACTACTCAATTGTG-TGTAGGTGGAA------A-AAATTAC---------------ACC-----ATG-TTT-TAACATGATGGACAAATAC-C-ATCCC--A-AATTGATTA--CAAGGTGGACAAAA---ACCTCCC
gi|10 : gtGGAC------A-AA----T---------------ACCATCCCA-AATTGATTACAAGGTGGACAAA-A-AC-CTCCC-CATCAAT--TTA--------GAACAAAAGGCACCCCcatcaatttagaacaaaaggcacccca
gi|11 : gtggacaaaaacatactactcaattgtgtgtaggtggaaaaaattacaccatgttttaacatgatGGACAAAACAACCCCC-------GGACTAAACACCCCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACC-CCTAATCATTT-TTACAAGGTGGACAAA-ACAC-CCCCTATG-GTTT--TCA--CAAGGTGGACAAAA--CACCa
gi|12 : tatgggagccAACACCTCACC-CTCATTTTTG-TATAAGCGGAC------A-AAA---C---------------ACC-TCCCATGAATT-TTACAAGGCGGACAAA-ACAC-CTCCCACG-AATT--TTA--CAAGGCGGACAAAA--CACCTCCCATGAATTTTACAAGGCGGACAc
gi|13 : GTCTTGACTTATGATAATATA-ATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCT---TGATATTATAGAAAGGTTTATGTaa
gi|14 : GTAGGACAAAATCTTCCCC-------AGACA-AA-ATCTC-CC-CCC-----TG-CTTAG----AC------A-TAA---T---------------CTC-TCCCATGGTTT-TTACAAGGCAGACGAA-acactatgtacag
gi|15 : agtTAGGTGGAC------AAAAA---C---------------AC---CCAATGTTTT-TAACATGGTGGACA
gi|16 : caatttcagGACGGAC------A-AAA---C---------------CCC-CTACATTGTTT-TTA-ATAGTGGACAAA-ACCCACTACAACA-A-----TTAATCAGATTGGACAAAA--CCCCCCgttccaatttttttactagacaggcaaaaatc
gi|17 : GTAGGGCAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TAT
gi|18 : gtGTAGGGCAAAACACCTCCC-------GGTTATAACACCTCACC-CTCATTTTTG-TA
gi|19 : gtAACACCTCACC-CTCATTTTTG-TA
gi|2 : gagtgtagggctaTAATAC-------CTAA-------CATAGTAAAAAAAATAACTGCAA-GACAAAGTAAAGTTTTAATATGTTATTA--AAGATCCATATTTT--T----TT-ATTATGTA--TGCCATCA-G--TGC-----ATGAAAAAGAAAAATAC-AATGAATGC--ACAGTTTGATGCTATTTACTAT-----CACA-CCTGTGCA--TTTTCATTGTTTACACTTTGGTTGTTTTGTAAACAATCAATAT-------T-TCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------CATACATAATTATGTGGATCTTTAAAAAAGTGTGAACAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTACATTTCAC
gi|2 : cATACAAAAATGAGGGTGAGGGTTTATGTCCGGGAGGTGTTTTGTCCGTCACCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaaaatgagggtgagggtttatgtccgggaggtgttttgtccgtcacc
gi|20 : ctaatacctaacatagtaaaaaaaataactgcaagacaaagtaaagttttaatatgttattaaagatccatatttttttattatgtatgccatcagtgcatgaaaaagaaaaatacaatgaatgcacagtttgatgctatttactatcacacctgtgcattttcattgtttacactttggttgttttgtaaacaatcaatatttcataattgaaaacatcaaactgtacatcttttgtattattcttttgcatgcattgtcttgacttcatacataattatgtggatctttaaaaaagtgtgaacaatgactttgtcttactgatattatagaaaggtttatgtctgggaggcattatgtccactatgtacatttcacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAA--CACCTACCGTGAAATTTACAAGGTGGACAT
gi|21 : GTAGGGCAAAACACCTCCC-------GGACATAATAC
gi|3 : agtGGACAAAACACCCCCC-------GGACTAAACACCCCCCG-ATCATTTTTG-TATAGGTGGACATGATAA-AAA---TGATGAGGGGTGTTTAACC-CCTCATCATTT-TTACAAGATGGACAAA-ACAC-CCACTACG-GTTT--TTA--CAAGGTGGACAAAA--CACCCCCTAAGGTTTTTAAAGGGTGGACAAAACACACCTTATCTAAAATACCTCCCAATAATGAGG-TTACAATAATGACAAAAT-A-TTTTTAATG-TTAATTAGGAAG-TTTTTATTGT--TGGAATTCCTTAATTAGCTGTTATCATG--TATAACTGATATCATAGAATAATATGAATGGTTATTGCCAATT--ATATTATTT----T-----TACA-C-AT-AAAGCTTTTAATTG---ACATTT
gi|4 : ggagccGTAGGACAACCCCCCCCCCCCCCCTCGGACTAAACACCTCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACC-CCTCATCATTT-TTACAAGGTGGACAAA-ACAC-CCCCTAAG-GTTT--TTA--AAGGGTGGACAAAA--CACCCCTT---AACT----AA---------AACAC-------CT---------CCCAATAATGAGG-TTACAATAATGACAAAATAT-TTTTCAATATTTTA--------------ATTTTTAT----TTTATTACACA--TGT--TTA-ATTTAC-----ACAGAAAATAAACATTCAAATGGATTT--A-AGT
gi|5 : aaacacgcactttttttcataagttaacatgctcaaaataatgagt-------GGGCAAAACACCTCACC-CTCATTTTCG-TAT
gi|5 : aTAATAC-------CTGA-------TATAATAA-AAAA-TAACAGTAA-GACAAAAAAA-GTTTAAATATTTTATTA--AAGATCCGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaaataacagtaagacaaaaaaagtttaaatattttattaaagatccgtattg
gi|6 : agggcaaaacacctcaccctcattttcgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAAAACACCTCCC-------GGACATAACACCTCACA-CTCAGTTTTG-TATACGAGGAC------A-AAAAA-C---------------ACC-TCCCACGAATT-TTACAAGGCGGACAAA-ACAC-CTCATGCA-GATT--TTG--CAAGGAGG-CCAAA--CGCTTCCCACGAATTTTACAg
gi|7 : tgacGTAGGGCAAAACACCTCCC-------GGATATAACAACTCACC-CTCATTTTTGGTATAGGAGGAC------A-AAA---C---------------ACC-TCCCACGACTT-TTACAAGGTGGATAAA-ACCC-CTCCCGCA-AATT--TTA--CAAAGAGGATAAAA--CACCTCCCGTGAAACTTACAAGGTGGACtagaggaaaaat
gi|8 : GGACAAAACACCTCCC-------GGACATAACCCCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACC-TCCCACGAATT-TTACAAGGCGGACAAA-ACCC-CTCACTCA-GATT--TTA--CAAGGCGGACAAAA--CACCTCCCACGAATTTTACAAGGCGGACA
gi|9 : atGGACAAAACACCTCCC-------GTACATAACCCCTCACC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACC-TCCCACGAATT-TTACAAGGCGGACAAA-ACCC-CTAACGCA-GATT--TTA--CAAAGAGGACAAAA--CACCTCCAGCATATTTTACAAGG
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 333333333333333333 1 2 11 2222222 11 1111 22222 1 11 3333333333 11 3333 4444444 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 9999999 5 2 2 7 999999 3 3333333333333333333 0 0 0 1 3 4444 666 55 7 2 2 4 5 222222222222222222 0 5 8 1 0 0 8 0 0 11 8 3 6666666 7 44 33 6 7777 55555 1 9 33 11 2 7 7 8888888888 88 3333 3333333 6 7 7 6 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2
lowQualScore : ....... . . . . ...... . ................... . . . . . .... ... .. . . . . . .................. . . . . . . . . . .. . . ....... . .. .. . .... ..... . . .. .. . . . .......... .. .... ....... . . . . . ............................................................................................................................................... . .
lowQualScore : 3333333 4 7 7 1 666666 3 9999999999999999999 8 7 9 9 6 5555 444 00 2 7 3 2 7 666666666666666666 6 8 0 4 4 8 0 8 8 00 6 2 0000000 0 55 88 5 8888 00000 0 0 88 22 5 3 3 3333333333 33 0000 3333333 7 3 3 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5
consensus : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACA--TTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
Reference ( family-1365 ) : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATNCACAGTTTGATGCTATTTACTATTA-----CAC-TGTACA--TTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
gi|1 : GTAGGGCAAAACACCTCCT-------GGACATAACACCTCATC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCATGATTTTTACAAGGCGGATAAAACCCC-TCCCGCAAA---TT--TTACAAGA-GGACAAAACACCTCCCGTGAAATTTACAAGATGGAC-ATAATAC-------CTAA-------TACAATAA-AAAA-TAACAGTAA-GACAAAGTAA-GTTTTAATATTTTATTA--AAGGTCCGTATTTT--T----TTTATTATGTA--TGCCATCA-G--TAC-----ATGCAAAAGAAAAATAC-AATGA--ATTCACAGTTTGATGCTATTTACTATTAGTATACACCTGTACA--TTTTCATTGTAT-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTT-AAAAAGTGTGAAAAATGTCTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGAGTGAGGGGCTATGTCCGGACAGTGTTTTGTCCGTCACC
gi|10 : -------GGACA-AAAACAT-ACTACTCAATTGTG-TGTAGGTGGAA------A-AAATTAC---------------ACC----ATG-TTTTAACATGATGGACAAA-TACCATCCCA--AA---TTGATTACAAGGTGGACAAAA-ACCTCCC
gi|11 : gtGGACAAAACAACCCCC-------GGACTAAACACCCCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTAATCATTTTTACAAGGTGGACAAAACACC-CCCTATGGT---TT--TCACAAGGTGGACAAAACACCcatcaatttagaacaaaaggcacccca
gi|12 : tatgggagccAACACCTCACC-CTCATTTTTG-TATAAGCGGAC------A-AAA---C---------------ACCTCCCATGAATTTTACAAGGCGGACAAAACACC-TCCCACGAA---TT--TTACAAGGCGGACAAAACACCTCCCATGAATTTTACAAGGCGGAC-Ac
gi|13 : GTCTTGACTTATGATAATATA-ATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCT---TGATATTATAGAAAGGTTTATGT-------ACACTATGTACAaa
gi|14 : GTAGGACAAAATCTTCCCC-------AGACA-AA-ATCTC-CC-CCC-----TG-CTTAG----AC------A-TAA---T---------------CTCTCCCATGGTTTTTACAAGGCAGACGAAg
gi|15 : agtTAGGTGGAC------AAAAA---C---------------AC--CCAATGTTTTTAACATGGTGGACAG-----T-TCC----AATTTTT--TTACTAGACAGGCAAAA
gi|17 : caatttcagGTAGGGCAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATatc
gi|18 : gtGTAGGGCAAAACACCTCCC-------GGTTATAACACCTCACC-CTCATTTTTG-TA
gi|19 : gtAACACCTCACC-CTCATTTTTG-TA
gi|2 : gagtgtagggctaTAATAC-------CTAA-------CATAGTAAAAAAAATAACTGCAA-GACAAAGTAAAGTTTTAATATGTTATTA--AAGATCCATATTTT--T----TT-ATTATGTA--TGCCATCA-G--TGC-----ATGAAAAAGAAAAATAC-AATGA--ATGCACAGTTTGATGCTATTTACTATCA-----CACCTGTGCA--TTTTCATTGT-TTACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------CATACATAATTATGTGGATCTTTAAAAAAGTGTGAACAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTACATTTCAC
gi|2 : cATACAAAAATGAGGGTGAGGGTTTATGTCCGGGAGGTGTTTTGTCCGTCACCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaaaatgagggtgagggtttatgtccgggaggtgttttgtccgtcacc
gi|20 : ctaatacctaacatagtaaaaaaaataactgcaagacaaagtaaagttttaatatgttattaaagatccatatttttttattatgtatgccatcagtgcatgaaaaagaaaaatacaatgaatgcacagtttgatgctatttactatcacacctgtgcattttcattgtttacactttggttgttttgtaaacaatcaatatttcataattgaaaacatcaaactgtacatcttttgtattattcttttgcatgcattgtcttgacttcatacataattatgtggatctttaaaaaagtgtgaacaatgactttgtcttactgatattatagaaaggtttatgtctgggaggcattatgtccactatgtacatttcacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACACCTACCGTGAAATTTACAAGGTGGAC-AT
gi|21 : GTAGGGCAAAACACCTCCC-------GGACATAATAC
gi|3 : agtGGACAAAACACCCCCC-------GGACTAAACACCCCCCG-ATCATTTTTG-TATAGGTGGACATGATAA-AAA---TGATGAGGGGTGTTTAACCCCTCATCATTTTTACAAGATGGACAAAACACC-CACTACGGT---TT--TTACAAGGTGGACAAAACACCCCCTAAGGTTTTTAAAGGGTGGAC-AAAACACACCTTATCTAAAATACCTCCCAATAATGAGG-TTACAATAATGACAAAAT-A-TTTTTAATG-TTAATTAGGAAG-TTTTTATTGT--TGGAATTCCTTAATTAGCTGTTATCATG--TATAACTGATATCATAGAATAATATGAATGGTTATTGCCAATT--ATATTATTT----TTA-----CAC--ATAAAGCTTTTAATTG----ACATTT
gi|4 : ggagccGTAGGACAACCCCCCCCCCCCCCCTCGGACTAAACACCTCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTCATCATTTTTACAAGGTGGACAAAACACC-CCCTAAGGT---TT--TTAAAGGGTGGACAAAACACCCC---------TTA--------ACTAAAACAC-------CT---------CCCAATAATGAGG-TTACAATAATGACAAAATAT-TTTTCAATATTTTA--------------ATTTTTAT----TTTATTACACA--TGT--TTA-ATTTAC-----ACAGAAAATAAACATTCAAATGG--ATTTA-AGT
gi|5 : aaacacgcactttttttcataagttaacatgctcaaaataatgagt-------GGGCAAAACACCTCACC-CTCATTTTCG-TAT
gi|5 : aTAATAC-------CTGA-------TATAATAA-AAAA-TAACAGTAA-GACAAAAAAA-GTTTAAATATTTTATTA--AAGATCCGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaaataacagtaagacaaaaaaagtttaaatattttattaaagatccgtattg
gi|6 : agggcaaaacacctcaccctcattttcgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAAAACACCTCCC-------GGACATAACACCTCACA-CTCAGTTTTG-TATACGAGGAC------A-AAAAA-C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACACC-TCATGCAGA---TT--TTGCAAGGAGG-CCAAACGCTTCCCACGAATTTTACATAGAGGAg
gi|7 : tgacGTAGGGCAAAACACCTCCC-------GGATATAACAACTCACC-CTCATTTTTGGTATAGGAGGAC------A-AAA---C---------------ACCTCCCACGACTTTTACAAGGTGGATAAAACCCC-TCCCGCAAA---TT--TTACAAAGAGGATAAAACACCTCCCGTGAAACTTACAAGGTGGAC-aaaat
gi|8 : GGACAAAACACCTCCC-------GGACATAACCCCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TCACTCAGA---TT--TTACAAGGCGGACAAAACACCTCCCACGAATTTTACAAGGCGGAC-A
gi|9 : atGGACAAAACACCTCCC-------GTACATAACCCCTCACC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TAACGCAGA---TT--TTACAAAGAGGACAAAACACCTCCAGCATATTTTACAAGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GACGGACAAAACCCCCTACATTGTTTTTAATAGTGGACAAAACCCACTACAACAATTAATCAGATTGGACAAAACCCCCC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 333333333333333333 1 2 11 2222222 11 1111 22222 1 11 33333 3333 4444444 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 9999999 5 2 2 2 999999 3 3333333333333333333 0 0 0 1 3 4444 666 55 7 2 2 4 5 222222222222222222 0 5 8 1 0 0 8 0 0 11 8 3 6666666 7 44 33 6 7777 55555 1 9 33 0 2 7 7 33333 3333 3333333 6 7 7 6 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2
lowQualScore : ....... . . . . ...... . ................... . . . . . .... ... .. . . . . . .................. . . . . . . . . . .. . . ....... . .. .. . .... ..... . . .. . . . . ..... .... ....... . . . . . ............................................................................................................................................... . .
lowQualScore : 3333333 4 7 7 2 666666 3 9999999999999999999 8 7 9 9 6 5555 444 00 2 7 3 2 7 666666666666666666 6 8 0 4 4 8 0 8 8 00 6 2 0000000 0 55 88 5 8888 00000 0 0 88 2 5 3 3 33333 0000 3333333 7 3 3 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5
consensus : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
Reference ( family-1365 ) : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
gi|1 : GTAGGGCAAAACACCTCCT-------GGACATAACACCTCATC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCATGATTTTTACAAGGCGGATAAAACCCC-TCCCGCAAA---TT--TTACAAGA-GGACAAAACACCTCCCGTGAAATTTACAAGATGGAC-ATAATAC-------CTAA-------TACAATAA-AAAA-TAACAGTAA-GACAAAGTAA-GTTTTAATATTTTATTA--AAGGTCCGTATTTT--T----TTTATTATGTA--TGCCATCA-G--TAC-----ATGCAAAAGAAAAATAC-AATGA--ATTCACAGTTTGATGCTATTTACTATTAGTATACACCTGTACATTTTCATTGTAT-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTT-AAAAAGTGTGAAAAATGTCTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGAGTGAGGGGCTATGTCCGGACAGTGTTTTGTCCGTCACC
gi|10 : -------GGACA-AAAACAT-ACTACTCAATTGTG-TGTAGGTGGAA------A-AAATTAC---------------ACC----ATG-TTTTAACATGATGGACAAA-TACCATCCCA--AA---TTGATTACAAGGTGGACAAAA-ACCTCCC
gi|11 : gtGGACAAAACAACCCCC-------GGACTAAACACCCCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTAATCATTTTTACAAGGTGGACAAAACACC-CCCTATGGT---TT--TCACAAGGTGGACAAAACACCcatcaatttagaacaaaaggcacccca
gi|12 : tatgggagccAACACCTCACC-CTCATTTTTG-TATAAGCGGAC------A-AAA---C---------------ACCTCCCATGAATTTTACAAGGCGGACAAAACACC-TCCCACGAA---TT--TTACAAGGCGGACAAAACACCTCCCATGAATTTTACAAGGCGGAC-Ac
gi|13 : GTCTTGACTTATGATAATATA-ATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCT---TGATATTATAGAAAGGTTTATGT-------ACACTATGTACAaa
gi|14 : GTAGGACAAAATCTTCCCC-------AGACA-AA-ATCTC-CC-CCC-----TG-CTTAG----AC------A-TAA---T---------------CTCTCCCATGGTTTTTACAAGGCAGACGAAg
gi|15 : agtTAGGTGGAC------AAAAA---C---------------AC--CCAATGTTTTTAACATGGTGGACAG-----T-TCC----AATTTTT--TTACTAGACAGGCAAAA
gi|17 : caatttcagGTAGGGCAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATatc
gi|18 : gtGTAGGGCAAAACACCTCCC-------GGTTATAACACCTCACC-CTCATTTTTG-TA
gi|19 : gtAACACCTCACC-CTCATTTTTG-TA
gi|2 : gagtgtagggctaTAATAC-------CTAA-------CATAGTAAAAAAAATAACTGCAA-GACAAAGTAAAGTTTTAATATGTTATTA--AAGATCCATATTTT--T----TT-ATTATGTA--TGCCATCA-G--TGC-----ATGAAAAAGAAAAATAC-AATGA--ATGCACAGTTTGATGCTATTTACTATCA-----CACCTGTGCATTTTCATTGT-TTACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------CATACATAATTATGTGGATCTTTAAAAAAGTGTGAACAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTACATTTCAC
gi|2 : cATACAAAAATGAGGGTGAGGGTTTATGTCCGGGAGGTGTTTTGTCCGTCACCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaaaatgagggtgagggtttatgtccgggaggtgttttgtccgtcacc
gi|20 : ctaatacctaacatagtaaaaaaaataactgcaagacaaagtaaagttttaatatgttattaaagatccatatttttttattatgtatgccatcagtgcatgaaaaagaaaaatacaatgaatgcacagtttgatgctatttactatcacacctgtgcattttcattgtttacactttggttgttttgtaaacaatcaatatttcataattgaaaacatcaaactgtacatcttttgtattattcttttgcatgcattgtcttgacttcatacataattatgtggatctttaaaaaagtgtgaacaatgactttgtcttactgatattatagaaaggtttatgtctgggaggcattatgtccactatgtacatttcacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACACCTACCGTGAAATTTACAAGGTGGAC-AT
gi|21 : GTAGGGCAAAACACCTCCC-------GGACATAATAC
gi|3 : agtGGACAAAACACCCCCC-------GGACTAAACACCCCCCG-ATCATTTTTG-TATAGGTGGACATGATAA-AAA---TGATGAGGGGTGTTTAACCCCTCATCATTTTTACAAGATGGACAAAACACC-CACTACGGT---TT--TTACAAGGTGGACAAAACACCCCCTAAGGTTTTTAAAGGGTGGAC-AAAACACACCTTATCTAAAATACCTCCCAATAATGAGG-TTACAATAATGACAAAAT-A-TTTTTAATG-TTAATTAGGAAG-TTTTTATTGT--TGGAATTCCTTAATTAGCTGTTATCATG--TATAACTGATATCATAGAATAATATGAATGGTTATTGCCAATT--ATATTATTT----TTA-----CACATAAAGCTTTTAATTG----ACATTT
gi|4 : ggagccGTAGGACAACCCCCCCCCCCCCCCTCGGACTAAACACCTCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTCATCATTTTTACAAGGTGGACAAAACACC-CCCTAAGGT---TT--TTAAAGGGTGGACAAAACACCCC---------TTA--------ACTAAAACAC-------CT---------CCCAATAATGAGG-TTACAATAATGACAAAATAT-TTTTCAATATTTTA--------------ATTTTTAT----TTTATTACACA--TGT--TTA-ATTTAC-----ACAGAAAATAAACATTCAAATGG--ATTTA-AGT
gi|5 : aaacacgcactttttttcataagttaacatgctcaaaataatgagt-------GGGCAAAACACCTCACC-CTCATTTTCG-TAT
gi|5 : aTAATAC-------CTGA-------TATAATAA-AAAA-TAACAGTAA-GACAAAAAAA-GTTTAAATATTTTATTA--AAGATCCGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaaataacagtaagacaaaaaaagtttaaatattttattaaagatccgtattg
gi|6 : agggcaaaacacctcaccctcattttcgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAAAACACCTCCC-------GGACATAACACCTCACA-CTCAGTTTTG-TATACGAGGAC------A-AAAAA-C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACACC-TCATGCAGA---TT--TTGCAAGGAGG-CCAAACGCTTCCCACGAATTTTACATAGAGGAg
gi|7 : tgacGTAGGGCAAAACACCTCCC-------GGATATAACAACTCACC-CTCATTTTTGGTATAGGAGGAC------A-AAA---C---------------ACCTCCCACGACTTTTACAAGGTGGATAAAACCCC-TCCCGCAAA---TT--TTACAAAGAGGATAAAACACCTCCCGTGAAACTTACAAGGTGGAC-aaaat
gi|8 : GGACAAAACACCTCCC-------GGACATAACCCCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TCACTCAGA---TT--TTACAAGGCGGACAAAACACCTCCCACGAATTTTACAAGGCGGAC-A
gi|9 : atGGACAAAACACCTCCC-------GTACATAACCCCTCACC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TAACGCAGA---TT--TTACAAAGAGGACAAAACACCTCCAGCATATTTTACAAGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GACGGACAAAACCCCCTACATTGTTTTTAATAGTGGACAAAACCCACTACAACAATTAATCAGATTGGACAAAACCCCCC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 333333333333333333 1 2 11 2222222 11 1111 22222 1 11 33333 3333 4444444 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 9999999 5 2 2 2 999999 3 3333333333333333333 0 0 0 1 3 4444 666 55 7 2 2 4 5 222222222222222222 0 5 8 1 0 0 8 0 0 11 8 3 6666666 7 44 33 6 7777 55555 1 9 33 0 2 7 7 33333 3333 3333333 6 7 7 6 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2
lowQualScore : ....... . . . . ...... . ................... . . . . . .... ... .. . . . . . .................. . . . . . . . . . .. . . ....... . .. .. . .... ..... . . .. . . . . ..... .... ....... . . . . . ............................................................................................................................................... . .
lowQualScore : 3333333 4 7 7 2 666666 3 9999999999999999999 8 7 9 9 6 5555 444 00 2 7 3 2 7 666666666666666666 6 8 0 4 4 8 0 8 8 00 6 2 0000000 0 55 88 5 8888 00000 0 0 88 2 5 3 3 33333 0000 3333333 7 3 3 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5
consensus : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
Reference ( family-1365 ) : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
gi|1 : GTAGGGCAAAACACCTCCT-------GGACATAACACCTCATC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCATGATTTTTACAAGGCGGATAAAACCCC-TCCCGCAAA---TT--TTACAAGA-GGACAAAACACCTCCCGTGAAATTTACAAGATGGAC-ATAATAC-------CTAA-------TACAATAA-AAAA-TAACAGTAA-GACAAAGTAA-GTTTTAATATTTTATTA--AAGGTCCGTATTTT--T----TTTATTATGTA--TGCCATCA-G--TAC-----ATGCAAAAGAAAAATAC-AATGA--ATTCACAGTTTGATGCTATTTACTATTAGTATACACCTGTACATTTTCATTGTAT-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTT-AAAAAGTGTGAAAAATGTCTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGAGTGAGGGGCTATGTCCGGACAGTGTTTTGTCCGTCACC
gi|10 : -------GGACA-AAAACAT-ACTACTCAATTGTG-TGTAGGTGGAA------A-AAATTAC---------------ACC----ATG-TTTTAACATGATGGACAAA-TACCATCCCA--AA---TTGATTACAAGGTGGACAAAA-ACCTCCC
gi|11 : gtGGACAAAACAACCCCC-------GGACTAAACACCCCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTAATCATTTTTACAAGGTGGACAAAACACC-CCCTATGGT---TT--TCACAAGGTGGACAAAACACCcatcaatttagaacaaaaggcacccca
gi|12 : tatgggagccAACACCTCACC-CTCATTTTTG-TATAAGCGGAC------A-AAA---C---------------ACCTCCCATGAATTTTACAAGGCGGACAAAACACC-TCCCACGAA---TT--TTACAAGGCGGACAAAACACCTCCCATGAATTTTACAAGGCGGAC-Ac
gi|13 : GTCTTGACTTATGATAATATA-ATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCT---TGATATTATAGAAAGGTTTATGT-------ACACTATGTACAaa
gi|14 : GTAGGACAAAATCTTCCCC-------AGACA-AA-ATCTC-CC-CCC-----TG-CTTAG----AC------A-TAA---T---------------CTCTCCCATGGTTTTTACAAGGCAGACGAAg
gi|15 : agtTAGGTGGAC------AAAAA---C---------------AC--CCAATGTTTTTAACATGGTGGACAG-----T-TCC----AATTTTT--TTACTAGACAGGCAAAA
gi|17 : caatttcagGTAGGGCAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATatc
gi|18 : gtGTAGGGCAAAACACCTCCC-------GGTTATAACACCTCACC-CTCATTTTTG-TA
gi|19 : gtAACACCTCACC-CTCATTTTTG-TA
gi|2 : gagtgtagggctaTAATAC-------CTAA-------CATAGTAAAAAAAATAACTGCAA-GACAAAGTAAAGTTTTAATATGTTATTA--AAGATCCATATTTT--T----TT-ATTATGTA--TGCCATCA-G--TGC-----ATGAAAAAGAAAAATAC-AATGA--ATGCACAGTTTGATGCTATTTACTATCA-----CACCTGTGCATTTTCATTGT-TTACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------CATACATAATTATGTGGATCTTTAAAAAAGTGTGAACAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTACATTTCAC
gi|2 : cATACAAAAATGAGGGTGAGGGTTTATGTCCGGGAGGTGTTTTGTCCGTCACCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaaaatgagggtgagggtttatgtccgggaggtgttttgtccgtcacc
gi|20 : ctaatacctaacatagtaaaaaaaataactgcaagacaaagtaaagttttaatatgttattaaagatccatatttttttattatgtatgccatcagtgcatgaaaaagaaaaatacaatgaatgcacagtttgatgctatttactatcacacctgtgcattttcattgtttacactttggttgttttgtaaacaatcaatatttcataattgaaaacatcaaactgtacatcttttgtattattcttttgcatgcattgtcttgacttcatacataattatgtggatctttaaaaaagtgtgaacaatgactttgtcttactgatattatagaaaggtttatgtctgggaggcattatgtccactatgtacatttcacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACACCTACCGTGAAATTTACAAGGTGGAC-AT
gi|21 : GTAGGGCAAAACACCTCCC-------GGACATAATAC
gi|3 : agtGGACAAAACACCCCCC-------GGACTAAACACCCCCCG-ATCATTTTTG-TATAGGTGGACATGATAA-AAA---TGATGAGGGGTGTTTAACCCCTCATCATTTTTACAAGATGGACAAAACACC-CACTACGGT---TT--TTACAAGGTGGACAAAACACCCCCTAAGGTTTTTAAAGGGTGGAC-AAAACACACCTTATCTAAAATACCTCCCAATAATGAGG-TTACAATAATGACAAAAT-A-TTTTTAATG-TTAATTAGGAAG-TTTTTATTGT--TGGAATTCCTTAATTAGCTGTTATCATG--TATAACTGATATCATAGAATAATATGAATGGTTATTGCCAATT--ATATTATTT----TTA-----CACATAAAGCTTTTAATTG----ACATTT
gi|4 : ggagccGTAGGACAACCCCCCCCCCCCCCCTCGGACTAAACACCTCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTCATCATTTTTACAAGGTGGACAAAACACC-CCCTAAGGT---TT--TTAAAGGGTGGACAAAACACCCC---------TTA--------ACTAAAACAC-------CT---------CCCAATAATGAGG-TTACAATAATGACAAAATAT-TTTTCAATATTTTA--------------ATTTTTAT----TTTATTACACA--TGT--TTA-ATTTAC-----ACAGAAAATAAACATTCAAATGG--ATTTA-AGT
gi|5 : aaacacgcactttttttcataagttaacatgctcaaaataatgagt-------GGGCAAAACACCTCACC-CTCATTTTCG-TAT
gi|5 : aTAATAC-------CTGA-------TATAATAA-AAAA-TAACAGTAA-GACAAAAAAA-GTTTAAATATTTTATTA--AAGATCCGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaaataacagtaagacaaaaaaagtttaaatattttattaaagatccgtattg
gi|6 : agggcaaaacacctcaccctcattttcgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAAAACACCTCCC-------GGACATAACACCTCACA-CTCAGTTTTG-TATACGAGGAC------A-AAAAA-C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACACC-TCATGCAGA---TT--TTGCAAGGAGG-CCAAACGCTTCCCACGAATTTTACATAGAGGAg
gi|7 : tgacGTAGGGCAAAACACCTCCC-------GGATATAACAACTCACC-CTCATTTTTGGTATAGGAGGAC------A-AAA---C---------------ACCTCCCACGACTTTTACAAGGTGGATAAAACCCC-TCCCGCAAA---TT--TTACAAAGAGGATAAAACACCTCCCGTGAAACTTACAAGGTGGAC-aaaat
gi|8 : GGACAAAACACCTCCC-------GGACATAACCCCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TCACTCAGA---TT--TTACAAGGCGGACAAAACACCTCCCACGAATTTTACAAGGCGGAC-A
gi|9 : atGGACAAAACACCTCCC-------GTACATAACCCCTCACC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TAACGCAGA---TT--TTACAAAGAGGACAAAACACCTCCAGCATATTTTACAAGG
blockSeqs : CCCCCTC A A G T ATGATA A TGATGAGGGGTGTTTA A A TATG TTT GA T T T C T ACCTTATCTAAAATACCT A A A T A GG A A TGGAA C TG GC C ATT AACTG A G TT C T A . TTT ATGATAA C A T C C T A
blockSeqs : . T . . T . . TTAC A . CACG . . T T A T . CTAA T . T T . . A T TAT T AT . T TG . T A . C . . . . . . A . .
blockSeqs : . T . . C . . AAC A . TACG . . C A T T . CTGA T . T . . . . G T . CA . . G . G . . .
blockSeqs : . T . . T . . C A . TAAG . . C C T A . CT . . A . . . . .
blockSeqs : . A . . T . . C A . TGCA . . T T A T .
blockSeqs : . A . . T . . T A . CGCA . . T C T C .
blockSeqs : . A . . A . . C C . CTCA . . A C T .
blockSeqs : . T . . A . . C C . CGCA . . A . .
blockSeqs : . T . . C . . C C . CA . . C
blockSeqs : . T . . A . . C . . . . . A
blockSeqs : . T . . . . . C
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . .
blockSeqCons :
originalCons : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
finalCons : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GACGGACAAAACCCCCTACATTGTTTTTAATAGTGGACAAAACCCACTACAACAATTAATCAGATTGGACAAAACCCCCC
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222 333333333333333333 1 2 11 2222222 11 1111 22222 1 11 33333 3333 4444444 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 9999999 5 2 2 2 999999 3 3333333333333333333 0 0 0 1 3 4444 666 55 7 2 2 4 5 222222222222222222 0 5 8 1 0 0 8 0 0 11 8 3 6666666 7 44 33 6 7777 55555 1 9 33 0 2 7 7 33333 3333 3333333 6 7 7 6 1 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1 2
lowQualScore : ....... . . . . ...... . ................... . . . . . .... ... .. . . . . . .................. . . . . . . . . . .. . . ....... . .. .. . .... ..... . . .. . . . . ..... .... ....... . . . . . ............................................................................................................................................... . .
lowQualScore : 3333333 4 7 7 2 666666 3 9999999999999999999 8 7 9 9 6 5555 444 00 2 7 3 2 7 666666666666666666 6 8 0 4 4 8 0 8 8 00 6 2 0000000 0 55 88 5 8888 00000 0 0 88 2 5 3 3 33333 0000 3333333 7 3 3 7 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 5
consensus : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
Reference ( family-1365 ) : GTAGGACAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATAGGNGGAC------A-AAA---C---------------ACCTCCCACGATTTTTACAAGGCGGACAAAACACC-TCCCGCGGA---TT--TTACAAGGCGGACAAAACACCTCCCGCGAATTTTACAAGGCGGAC-ATAATAC-------CTAA-------CACAATAATAAAA-TAACAGTAATGACAAAATAA-GTTTTAATATTTTATTA--AAGATCCGTATTTT--T----TTTATTACGTA--TGCCATCA-G--TAC-----ATGNAAAAGAAAAATACGAATGG--ATTCACAGTTTGATGCTATTTACTATTA-----CACCTGTACATTTTCATTGT-T-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTANATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGGGTGAGGGNCTATGTCCGGGCGGTGTTTTGTCCGTCACC
gi|1 : GTAGGGCAAAACACCTCCT-------GGACATAACACCTCATC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCATGATTTTTACAAGGCGGATAAAACCCC-TCCCGCAAA---TT--TTACAAGA-GGACAAAACACCTCCCGTGAAATTTACAAGATGGAC-ATAATAC-------CTAA-------TACAATAA-AAAA-TAACAGTAA-GACAAAGTAA-GTTTTAATATTTTATTA--AAGGTCCGTATTTT--T----TTTATTATGTA--TGCCATCA-G--TAC-----ATGCAAAAGAAAAATAC-AATGA--ATTCACAGTTTGATGCTATTTACTATTAGTATACACCTGTACATTTTCATTGTAT-ACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------TATACATAATTATGTGGATCTTT-AAAAAGTGTGAAAAATGTCTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTAAATTTCACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACAAAAATGAGAGTGAGGGGCTATGTCCGGACAGTGTTTTGTCCGTCACC
gi|10 : -------GGACA-AAAACAT-ACTACTCAATTGTG-TGTAGGTGGAA------A-AAATTAC---------------ACC----ATG-TTTTAACATGATGGACAAA-TACCATCCCA--AA---TTGATTACAAGGTGGACAAAA-ACCTCCC
gi|11 : gtGGACAAAACAACCCCC-------GGACTAAACACCCCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTAATCATTTTTACAAGGTGGACAAAACACC-CCCTATGGT---TT--TCACAAGGTGGACAAAACACCcatcaatttagaacaaaaggcacccca
gi|12 : tatgggagccAACACCTCACC-CTCATTTTTG-TATAAGCGGAC------A-AAA---C---------------ACCTCCCATGAATTTTACAAGGCGGACAAAACACC-TCCCACGAA---TT--TTACAAGGCGGACAAAACACCTCCCATGAATTTTACAAGGCGGAC-Ac
gi|13 : GTCTTGACTTATGATAATATA-ATAATTATGTGGATCTTTAAAAAAGTGTGAAAAATGACTTTGTCT---TGATATTATAGAAAGGTTTATGT-------ACACTATGTACAaa
gi|14 : GTAGGACAAAATCTTCCCC-------AGACA-AA-ATCTC-CC-CCC-----TG-CTTAG----AC------A-TAA---T---------------CTCTCCCATGGTTTTTACAAGGCAGACGAAg
gi|15 : agtTAGGTGGAC------AAAAA---C---------------AC--CCAATGTTTTTAACATGGTGGACAG-----T-TCC----AATTTTT--TTACTAGACAGGCAAAA
gi|17 : caatttcagGTAGGGCAAAACACCTCCC-------GGACATAACACCTCACC-CTCATTTTTG-TATatc
gi|18 : gtGTAGGGCAAAACACCTCCC-------GGTTATAACACCTCACC-CTCATTTTTG-TA
gi|19 : gtAACACCTCACC-CTCATTTTTG-TA
gi|2 : gagtgtagggctaTAATAC-------CTAA-------CATAGTAAAAAAAATAACTGCAA-GACAAAGTAAAGTTTTAATATGTTATTA--AAGATCCATATTTT--T----TT-ATTATGTA--TGCCATCA-G--TGC-----ATGAAAAAGAAAAATAC-AATGA--ATGCACAGTTTGATGCTATTTACTATCA-----CACCTGTGCATTTTCATTGT-TTACACTTTGGTTGTTTTGTAAACAATCAATATTTCATAATTGAAAACATCAAACTGTACATCTTTTGTATTATTCTTTTGCATGCATTGTCTTGACTT-------CATACATAATTATGTGGATCTTTAAAAAAGTGTGAACAATGACTTTGTCTTACTGATATTATAGAAAGGTTTATGTCTGGGAGGCATTATGTCCACTATGTACATTTCAC
gi|2 : cATACAAAAATGAGGGTGAGGGTTTATGTCCGGGAGGTGTTTTGTCCGTCACCannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatacaaaaatgagggtgagggtttatgtccgggaggtgttttgtccgtcacc
gi|20 : ctaatacctaacatagtaaaaaaaataactgcaagacaaagtaaagttttaatatgttattaaagatccatatttttttattatgtatgccatcagtgcatgaaaaagaaaaatacaatgaatgcacagtttgatgctatttactatcacacctgtgcattttcattgtttacactttggttgttttgtaaacaatcaatatttcataattgaaaacatcaaactgtacatcttttgtattattcttttgcatgcattgtcttgacttcatacataattatgtggatctttaaaaaagtgtgaacaatgactttgtcttactgatattatagaaaggtttatgtctgggaggcattatgtccactatgtacatttcacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAAACACCTACCGTGAAATTTACAAGGTGGAC-AT
gi|21 : GTAGGGCAAAACACCTCCC-------GGACATAATAC
gi|3 : agtGGACAAAACACCCCCC-------GGACTAAACACCCCCCG-ATCATTTTTG-TATAGGTGGACATGATAA-AAA---TGATGAGGGGTGTTTAACCCCTCATCATTTTTACAAGATGGACAAAACACC-CACTACGGT---TT--TTACAAGGTGGACAAAACACCCCCTAAGGTTTTTAAAGGGTGGAC-AAAACACACCTTATCTAAAATACCTCCCAATAATGAGG-TTACAATAATGACAAAAT-A-TTTTTAATG-TTAATTAGGAAG-TTTTTATTGT--TGGAATTCCTTAATTAGCTGTTATCATG--TATAACTGATATCATAGAATAATATGAATGGTTATTGCCAATT--ATATTATTT----TTA-----CACATAAAGCTTTTAATTG----ACATTT
gi|4 : ggagccGTAGGACAACCCCCCCCCCCCCCCTCGGACTAAACACCTCCCG-CTCATTTTTG-TATAGGTGGAC------A-AAA---C---------------ACCCCTCATCATTTTTACAAGGTGGACAAAACACC-CCCTAAGGT---TT--TTAAAGGGTGGACAAAACACCCC---------TTA--------ACTAAAACAC-------CT---------CCCAATAATGAGG-TTACAATAATGACAAAATAT-TTTTCAATATTTTA--------------ATTTTTAT----TTTATTACACA--TGT--TTA-ATTTAC-----ACAGAAAATAAACATTCAAATGG--ATTTA-AGT
gi|5 : aaacacgcactttttttcataagttaacatgctcaaaataatgagt-------GGGCAAAACACCTCACC-CTCATTTTCG-TAT
gi|5 : aTAATAC-------CTGA-------TATAATAA-AAAA-TAACAGTAA-GACAAAAAAA-GTTTAAATATTTTATTA--AAGATCCGTATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaatacctgatataataaaaaataacagtaagacaaaaaaagtttaaatattttattaaagatccgtattg
gi|6 : agggcaaaacacctcaccctcattttcgtatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnGGACAAAACACCTCCC-------GGACATAACACCTCACA-CTCAGTTTTG-TATACGAGGAC------A-AAAAA-C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACACC-TCATGCAGA---TT--TTGCAAGGAGG-CCAAACGCTTCCCACGAATTTTACATAGAGGAg
gi|7 : tgacGTAGGGCAAAACACCTCCC-------GGATATAACAACTCACC-CTCATTTTTGGTATAGGAGGAC------A-AAA---C---------------ACCTCCCACGACTTTTACAAGGTGGATAAAACCCC-TCCCGCAAA---TT--TTACAAAGAGGATAAAACACCTCCCGTGAAACTTACAAGGTGGAC-aaaat
gi|8 : GGACAAAACACCTCCC-------GGACATAACCCCTCACC-CTCATTTTTG-TATAGGCGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TCACTCAGA---TT--TTACAAGGCGGACAAAACACCTCCCACGAATTTTACAAGGCGGAC-A
gi|9 : atGGACAAAACACCTCCC-------GTACATAACCCCTCACC-CTCATTTTTG-TATAGGAGGAC------A-AAA---C---------------ACCTCCCACGAATTTTACAAGGCGGACAAAACCCC-TAACGCAGA---TT--TTACAAAGAGGACAAAACACCTCCAGCATATTTTACAAGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GACGGACAAAACCCCCTACATTGTTTTTAATAGTGGACAAAACCCACTACAACAATTAATCAGATTGGACAAAACCCCCC