lowQualScore : 22222 7777777777777777 1 1 1 111 2222222222222222 111 1111 11 1111 1111111 2 333333333333 11 1 333 11111 1 1 1 11 11 1111 2222222222 11 222222222222 222222 1
lowQualScore : 99999 999 2222222222222222 2 2 2 0 0 0 0 888 6 4444444444444444 77 4 5 5 000 1 4444 3 8 0 7 11 5 8 1 9999 4444444 1 1 1 3 666666666666 1 1 5 44 6 9 6 3 222 7 2 888 55555 5 0 3 6 1 33 66 8 1 0 1 1 1 2 55 0 2 66 11 0000 4 66 888 3 1111111111 11 66 5 4 0 555555555555 0 222222 6 99 3 4
lowQualScore : ..... ... ................ . . . . . . . ... . ................ .. . . . ... . .... . . . . .. . . . .... ....... . . . . ............ . . . .. . . . . ... . . ... ..... . . . . . .. .. . . . . . . . .. . . .. .. .... . .. ... . .......... .. .. . . . ............ . ...... . .. . .
lowQualScore : 00000 555 5555555555555555 5 5 2 0 6 2 2 111 7 7777777777777777 99 7 6 7 000 7 2222 2 0 8 8 00 6 0 0 8888 4444444 2 9 5 4 222222222222 3 3 6 00 7 2 7 0 999 8 2 888 99999 4 0 2 0 2 88 22 0 4 7 3 7 7 1 77 7 0 99 11 6666 5 99 888 6 4444444444 99 11 7 7 2 666666666666 7 888888 7 22 3 2
consensus : NNNNNNNNNNNNNNNNTGTACAATGTAGCCCNNNATTAGTTCANCANGTC-AACTAGANCTATCACTGAAGGTGATNAATACCCCCNNNNNNNNNNNNNNNNNNNNNNNNTCTACCATT-GTATGAAGTTTGATGAAATTCC-ATC-C--AGT---------ACT--TTTCAAGTNA-TGCTC---CGGACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAGA--GTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGAAGTTTGATGAAATTCCATCCG------GTACTTTTCAAGTTATGCTCCGGACAA-GNAAA-----------TATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTC-CTCTCATTATATTCTACCATT-GTATGANGTTTGATGAAATTCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----AAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATGTTCTACCATCGTACGACGTTTGANGAAAT--TCCATC--CAGTAC----TTTTCAAGTNA--TGC---TCCGGACAAG---------GAA--AATT--GCA-ACGGACAGACC------------GACCGACAGACCGACCN-----CAGGGTGACTCCAATATACCC-CC--TC-AAACTTCGTTTGTCGGGGGTATA
Reference ( gi|2 ) : AGGGGGTATGTGTATTTGTAGATTCTAGCTCACAAT--GTTCAGTATATTTAACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATT-GTATGAAGTTTTATTAAATTAT-ATC-C--AAT---------AGT--TTTAAAGTTA-TGCTC---CAGACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAAA--GTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGAAACATGATGAAATTCCATCCG------GTACTTTTCAAGTTATGCTCCGGACAATGGAAA-----------TATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-CTGTACACTGCACTTC-CTGTCATTATATTCTACCATT-GTATGAAGTTTGATGAAATTCCATCCAGTACTTCAAAAGTAATGCTCTGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAATAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGTGA--TGC---TCCGGACAAG---------GAA--AATT--GCA-AAGGACAGACC------------GACCGACAGACCGACCA-----CAGGGTGACTCCAATATACCC-CC--TC-AAACTTCGTTTGTCGGGGGTATA
gi|1 : TGTACAATGTAGCCCCAAATTAATTCAACAAA---AACTAGAGCTATCACTGAAGGTGATGAATACTCCC
gi|12 : cattttaatcattacaaatccttttttgattaaCTTACTAT--GTT-ACTATGTC--ACTAGACCTATCACTAAAGATGATTAATACCCCCccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctacttcaaagggcaataactctgtaattagcaagaatagagttatgtttcctgtacactgcacttcctgtcattatattctaccattgtatgaagtttgatgaaattccatccagtactttaaaagtaatgctccggacaagagaaatatatcaaagggcaataactctgtaattagcaagaatacagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgaagcttgatgaaattccatccggtacttttcaagttatgctccggacaagaaaaaatatcaaagggcaataactctgtaattagcaagaatagagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgacgtttgatgaaattccatccagtacttttcaagtgatgctccggacaaggaaaattgcaacggacagaccgaccaaccgacagaccgacagaccaaccgcagggtgactccaatataccccttcaaactttgtttgtcgggggtata
gi|1 : agggcatatatagattagactcagttgttaggagtTCTACCATT-GTATGAAGTTTGATGAAATTCC-ATC-C--AGT---------ACT--TTAAAAGTAA-TGCTC---CGGACAAGA----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATACA--GTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGAAGCTTGATGAAATTCCATCCG------GTACTTTTCAAGTTATGCTCCGGACAA-GAAAA-----------AATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTC-CTCTCATTATATTCTACCATT-GTATGACGTTTGATGAAATTCCATCCAGTACTTTTCAAGTGATGCTCCGG---ACAAGG----AAAAT
gi|5 : cattttaatcattacaaatccttttttgattaatgtacaatgtagccccaaattaattcaacaaaaactagagctatcactgaaggtgatgaatactcccccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctacttcaaagggcaataactctgtaattagcaagaatagagttatgtttcctgtacactgcacttcctgtcattatatTCTACCATT-GTATGACGTTTGATGAAATTCC-ATC-C--AGT---------ACT--TTTCAAGTTA-TGCTC---CGGACAAGG----AAAATtgcaacggacagaccgaccaaccgacagaccgacagaccaaccgcagggtgactccaatataccccttcaaactttgtttgtcgggggtata
gi|7 : ggtacttttcaagttatgctccggacaagaaaaaatatcaaagggcaataactctgtaattagcaagaatagagttatgtgtcttgtacactgcacttcctctcattatatTCTACCATT-GTATGACGTTTGATGAAATTCC-ATC-C--AGT---------ACT--TTTCAAGTGA-TACTC---TGGACAAGC----AAAATtgcaacggacagaccgaccgacagaccgacctcagggtgactccagtataccccctcaaaacttcgtttgtcgggggtat
gi|4 : cctctcattatatTTTAACATTTGTACGAAGTTTGAAGGAATGAC-CTT-C--TTT---------GGT--TGTCAAGTAA-TCCTCTGGCAAGCAAAGTTCAGAAAGTTAAAAAAGGGAAAGTAGTTTTGTCA-----AAAAACAGACAGTTATGC--CATTGAACACTACAAATCATCTCGTTGTGTTTTACAAGCGTAC---ACAAGAAGGAA--CTATCTGTCTTACGTGACTGTCAAGTTATACTCCGTGC-ATGCAAAGTTCAGAATGTTACAGAAACGGGAAATAATTCTGTtgcaacggacagaccgaccgacagaccgaccacagggtgactccaatataccccctcaaacttcgtttgccgggggtata
gi|3 : tttatgtcattgtgcacaacacatcacttaactgtaATGAA-CTTTATTAAACTGTTATCACTAAATGGCTTGAAAAGTACTTTAAAAGTACTGCAC---CATCCAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAGA--GTTATGTTTC-TTGGACACTGCACTTCCTGTCATTATATGCTATCATTGTATGAAGTTTGATGAAATTCCATCCA------GTTCTTTAAAAGTAATGCTCCGGACAAGGGAAA-----------TATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGGACACTGCACTTC-CTCTCATTATATTCTACCATT-GTGTGAAGCTTGATGAAATTCCATCCGGTACTTTTCAAGTTATGCTCCGG---ACAAGG----AAAA-ATATCAAAGAGCAA-CAACTCTGTAATTAGCAAAAAAAG--TGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAACT--TACCTT--CAcaa
gi|18 : ttc-ATC-C--AGT---------ACT--TTAAAAGTAA-TGCTC---CGGACa
gi|5 : T---------ACT--TTTCAAGTTA-TGCTC---CGGACAAGA----AAAA-ATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAGA--GTTATGTGTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATCCA------GTACTTTTCAAGTTATGCTCCGGACAA-GGAAA------------ATTGCAACGGACA
gi|1 : ggTCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAGA--GTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATTGTATGAAGTTTGATGAAATTCCATCCA------GTACTTTAAAAGTAATGCTCCGGACAAGAGAAA-----------TATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATACAGTTATGTTTC-TTGTACACTGCACTTC-CTCTCATTATATTCTACCATT-GTATGAAGCTTGATGAAATTCCATCCGGTACTTTTCAAGTTATGCTCCGG---ACAAGA----AAAA-ATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGTGA--TGC---TCCGGACAAG---------GAA--AATT--GCA-ACGGACAGACCGACCAACCGACAGACCGACAGACCAACCG-----CAGGGTGACTCCAATATACCC-CT--TC-AAACTTTGTTTGTCGGGGGTATAgaccgaccgacagaccgacctcagggtgactccagtataccccctcaaaacttcgtttgtcgggggtat
gi|7 : cattttaatcattacaaatccttttttgattaatgtacaatgtagccccaaattaattcaacaaaaactagagctatcactgaaggtgatgaatactcccccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctactCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATCCA------GTACTTTTCAAGTGATACTCTGGACAA-GCAAA------------ATTGCAACGGACA
gi|9 : TTCCAT-----------ACTTTTCAAGTTATACTTTGAGCAAgaccgaccgacagaccgaccacagggtgactccaatataccccctcaaacttcgtttgccgggggtata
gi|18 : ataccacctcatcgtgctttacaagtttacaaagattcaacaaataatcATCCA------GTACTTTAAAAGTAATGCTCCGGACgacagcaagcagaagggcggaggaaggacagagaaaaggaa
gi|5 : G------GTACTTTTCAAGTTATGCTCCGGACAA-GAAAA-----------AATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTGTC-TTGTACACTGCACTTC-CTCTCATTATATTCTACCATT-GTATGACGTTTGATGAAATTCCATCCAGTACTTTTCAAGTTATGCTCCGG---ACAAGG----AAAAT
gi|15 : TTTTCAAGTTATGCTTCGGAC-ATGCAAA-----------tgcaacggacagaccgaccgacagaccgacctcagggtgactccagtataccccctcaaaacttcgtttgtcgggggtat
gi|4 : agcatacaaagttgaacaaattatcttatttggTTATGT--CATTGTGCACAACACATCACT-TAACTGTATT-TAACATTTGTACGAAGTTTGAAGGAATGACCTTCTTTGGTTGTCAAGTAATCCTCTGGCAAGCAAAGTTCAGAAAGTTAAAAAAGGGAAAGTAGTTTTGTCA-----AAAAACAGACAGTTATG--CCATTGAACACTACAAATCATCTCGTTGTGTTTTACAAGCGTAC-ACA--AGAAGGAACTATCTGTC--T--TACGTGACTGTCAAGTTA--TAC---TCCGTGCATG---------CAA--AGTT--gttaagaaaat
gi|7 : tC-CTCTCATTATATTCTACCATT-GTATGACGTTTGATGAAATTCCATCCAGTACTTTTCAAGTGATACTCTGG---ACAAGC----AAAATcagaatgttacagaaacgggaaataattctgtcaa
gi|18 : ATCCAGTACTTTAAAAGTAATGCTCCGG---ACtgcaacggacagaccgaccgacagaccgaccacagggtgactccaatataccccctcaaacttcgtttgccgggggtata
gi|5 : GTACTTTTCAAGTTATGCTCCGG---ACAAGA----AAAA-ATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTGTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGTTA--TGC---TCCGGACAAG---------GAA--AATT--GCA-ACGGACAGACC------------GACCGACAGACCGACCT-----CAGGGTGACTCCAGTATACCC-CC--TCAAAACTTCGTTTGTCGGGGGTAT
gi|6 : gC-TCGTGTTCTGCACACCACCTCAGTATGCTTTACAAGCGTGCAAAGTCTGAAAGAAT--T--ATCTTCTGTCG----TTTTCAAGTGACATGCATGCCCTGACAAGCAAAGTTCAGAA--AATT--ACA-AA
gi|7 : gacaacatgtataactgaaagttcagaaaaaaaaggaaagtaaaaaaccctccagaagtgtgccCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGTGA--TAC---TCTGGACAAG---------CAA--AATT--GCA-ACGGACAGACC------------GACCGACAGACCGACCA-----CAGGGTGACTCCAATATACCC-CC--TC-AAACTTCGTTTGCCGGGGGTATAaaagga
gi|9 : CTCATCGTGCTTTACAAGTTTACAAAGATTCAACAAATAATCT-TC--CA-TAC----TTTTCAAGTTA--TAC---TTTGAGCAAG---------ACAGCAA----GCAGAAGGGCGGA-G------------GAAGGACAGA
gi|18 : ataccacATC--CAGTAC----TTTAAAAGTAA--TGC---TCCGGACgaaaaggaa
gi|15 : ----TTTTCAAGTTA--TGC---TTCGGACATG---------CAA--AGTT--
gi|11 : agcatacaaagttgaacaaattatcttatttggGACA-----------GAAC-AACTTGGCA-AA---CAGATG------------GATCAACAAACAGGCCATCTGACAGAGTGGTTACAATATACCCAGC--TC-ATACTTTGTTTGCAGGGGaagaaaat
gi|17 : cATT--GCA-ACGGACAGACC------------GACCGACAGACCGAC
gi|13 : ACCGACA------------GACCGACAGACCGACCT-----CAGGGTGACTCCAGTATACCC-CC--TCAAAACTTCGTTTGTCGGGGGTATA
gi|16 : gacagaccaACAGATC------------AACCGACATAC----------------TGATTCTCATTTACCC-CCTATC-AAACTTTGTTTG-CGTGGGTATa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TCAAGGAATTCTCCGTACATGCAAAGCTAAGAAAATTACAAAATATACACACGTAACAGTAATTTCTTCAATACACGTAAATTTACAGTAATTACGTTTGTGTACTACACATTGCATATCATTGTGTTTTACACGTGTACAAAATGCT
Unaligned ( gi|10 ): AGAGGTGTGCCCTTTTGTTTCTGCACACCACATTCCTGTGCTTTACAAGACATATGGTGTTCACATTTCCAAGAATTGTCATGTGTGTTGTGACA
Unaligned ( gi|14 ): CGCCTCTTTGTCCTTTGCAAGTGTGCAAAGTTTAAAATGATTCCAGTTATGCTTTGTACAAGACAGCGAATGGA
Alignments
lowQualScore : 11 22222 222222222222222222222222 1 1 22 22 11 11 11 1 1 1 333333333 22 11 1111 111 111 222222222222 111 1
lowQualScore : 2 4 2 333 88 11 66666 7 1 1 444444444444444444444444 6 5 5 11 33 1 0 2 11 11 0 6 1 1 8 77 3 0 3 0 0 2 0 1 1 0 222222222 11 8 0 1 11 11 6 1 1 1 1 77 0 77 1 4444 000 111 2 555555555555 0 444 5 77 1 2
lowQualScore : . . . ... .. .. ..... . . . ........................ . . . .. .. . . . .. .. . . . . . .. . . . . . . . . . . ......... .. . . . .. .. . . . . . .. . .. . .... ... ... . ............ . ... . .. . .
lowQualScore : 5 0 5 000 55 77 00000 3 0 0 000000000000000000000000 0 0 0 00 33 0 7 5 00 00 8 0 4 4 0 00 2 0 2 0 2 5 0 0 0 8 000000000 22 0 8 4 00 44 7 4 4 4 0 99 7 99 7 2222 222 777 5 666666666666 2 666 7 99 4 3
consensus : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTNTCATTATATTCTACCATTGTACGAAGTTTGACGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGGACAA-GGGAAATATATCA-AAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATT-GTATGAAGCTTGATGAAATTCCATCCGGTACTTTTCAAGTTATGCTCCGGACAAG---------GAAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATCGTACGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGT--NATGC---TCCGGACAAGNAAAATTGCAACGGACAGACC------------GACCGACAGACCGACCN--CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
Reference ( family-1343 ) : NNNNNNNNNNNNNNNNTGTACAATGTAGCCCNNNATTAGTTCANCANGTC-AACTAGANCTATCACTGAAGGTGATNAATACCCCCNNNNNNNNNNNNNNNNNNNNNNNNTCTACCATTGTATGAAGTTTGATGAAATTCCATCCAGTACTTTTCAAGTNATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGAAGTTTGATGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGGACAA-GN-AAATATATCA-AAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATT-GTATGANGTTTGATGAAATTCCATCCGGTACTTTTCAAGTNATGCTCCGGACAAG---------GAAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATGTTCTACCATCGTACGACGTTTGANGAAAT--TCCATC--CAGTAC----TTTTCAAGT--NATGC---TCCGGACAAGGAAAATTGCAACGGACAGACC------------GACCGACAGACCGACCN--CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|1 : TGTACAATGTAGCCCCAAATTAATTCAACAAA---AACTAGAGCTATCACTGAAGGTGATGAATACTCCC
gi|1 : cattttaatcattacaaatccttttttgattaaTCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCCTGTACACTGCACTTCCTGTCATTATATTCTACCATTGTATGAAGTTTGATGAA--AT--TCCATCCAGTACTTTAAAAGTAATGCTCCGGACAA-GAGAAATATATCA-AAGGGCAATAACTCTGTAATTAGCAAGAATACAGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATT-GTATGAAGCTTGATGAAATTCCATCCGGTACTTTTCAAGTTATGCTCCGGACAAG---------AAAAA-ATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGT--GATGC---TCCGGACAAGGAAAATTGCAACGGACAGACCGACCAACCGACAGACCGACAGACCAACCG--CAGGGTGACTCCAATATACCC-CTT--C-AAACTTTGTTTGTCGGGGGTATAccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctacttcaaagggcaataactctgtaattagcaagaatagagttatgtttcctgtacactgcacttcctgtcattatattctaccattgtatgaagtttgatgaaattccatccagtactttaaaagtaatgctccggacaagagaaatatatcaaagggcaataactctgtaattagcaagaatacagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgaagcttgatgaaattccatccggtacttttcaagttatgctccggacaagaaaaaatatcaaagggcaataactctgtaattagcaagaatagagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgacgtttgatgaaattccatccagtacttttcaagtgatgctccggacaaggaaaattgcaacggacagaccgaccaaccgacagaccgacagaccaaccgcagggtgactccaatataccccttcaaactttgtttgtcgggggtata
gi|11 : cattttaatcattacaaatccttttttgattaatgtacaatgtagccccaaattaattcaacaaaaactagagctatcactgaaggtgatgaatactcccccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctactAACAGATGGATC------------AACAAACAGGCC-ATCTGACAGAGTGGTTACAATATACCCAGCT--C-ATACTTTGTTTGCAGGGG
gi|12 : cgacagaacaacttggcaTTACTATGTC-A-CTAGACCTATCACTAAAGATGATTAATACCCCC
gi|13 : agggcatatatagattagactcagttgttaggagtcttactatgCAACCGACAGACC----------------GACAGACCGACCT--CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATA
gi|15 : gacagacTACAAAGTTGAACAAATTAT--CTTATTTGGT---TTTCAAGTTATGCTTCGGACAT-GC-AAAa
gi|16 : agcaC------------GACCAACAGATCAACCGA-CATACTGATTCTCATTTACCC-CCTATC-AAACTTTGTTTG-CGTGGGTATgttaagaaaat
gi|17 : gggATTGCAACGGACAGACC------------GACCGACAGACCGAC
gi|18 : ATCCAGTACTTTAAAAGTAATGCTCCGGAC
gi|2 : TGTAGATTCTAGCTCACAAT--GTTCAGTATATTTAACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAATAGTTTTAAAGTTATGCTCCAGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAAAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGAAACATGATGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGGACAATGG-AAATATATCA-AAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATT-GTATGAAGTTTGATGAAATTCCATCCAGTACTTCAAAAGTAATGCTCTGGACAAG---------GGAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAATAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGT--GATGC---TCCGGACAAGGAAAATTGCAAAGGACAGACC------------GACCGACAGACCGACCA--CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|3 : agggggtatgtgtattAGTACTTTAAAAGTACTGCACCATCCAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGGACACTGCACTTCCTGTCATTATATGCTATCATTGTATGAAGTTTGATGAA--AT--TCCATCCAGTTCTTTAAAAGTAATGCTCCGGACAA-GGGAAATATATCA-AAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGGACACTGCACTTCCTCTCATTATATTCTACCATT-GTGTGAAGCTTGATGAAATTCCATCCGGTACTTTTCAAGTTATGCTCCGGACAAG---------GAAAA-ATATCAAAGAGCAA-CAACTCTGTAATTAGCAAAAAAAG--TGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAACT--TACCTT--CA
gi|4 : ttcatgaactttattaaactgttatcactaaatggcttgaaaTTATGT--CATTGTGCACAACACATCACTTAACTGTATT-TAACATTTGTACGAAGTTTGAAGGAATGACCTTCTTTGGTTGTCAAGTAATCCTCTGG-CAAGCAAAGTTCAGAAAGT-TAAAAAAGGGAAAGTAGTTTTGTCA-----AAAAACAGACAGTTATG--CCATTGAACACTACAAATCATCTCGTTGTGTTTTACAAGCGTAC-ACA--AGAAGGAACTATCTGTC--T--TACGTGACTGTCAAGT--TATAC---TCCGTGCATGCAAAGTTa
gi|5 : tGGTACTTTTCAAGTTATGCTCCGGACAAG---------AAAAA-ATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTGTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGT--TATGC---TCCGGACAAGGAAAATTGCAACGGACAGACC------------GACCGACAGACCGACCT--CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATcagaatgttacagaaacgggaaataattctgtcaa
gi|6 : C-TCGTGTTCTGCACACCACCTCAGTATGCTTTACAAGCGTGCAAAGTCTGAAAGAAT--T--ATCTTCTGTCG----TTTTCAAGTGACATGCATGCCCTGACAAGCAAAGTT
gi|7 : gacaacatgtataactgaaagttcagaaaaaaaaggaaagtaaaaaaccctccagaagtgtgccCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAAT--TCCATC--CAGTAC----TTTTCAAGT--GATAC---TCTGGACAAGCAAAATTGCAACGGACAGACC------------GACCGACAGACCGACCA--CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGCCGGGGGTATAcagaaaattacaaaaaagga
gi|9 : CTCATCGTGCTTTACAAGTTTACAAAGATTCAACAA--ATAATCT-TCCA-TACTTTTCAAGTTATACTTTGAGCAA-GA-CAGCA-AGCAGAAGGGC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TCAAGGAATTCTCCGTACATGCAAAGCTAAGAAAATTACAAAATATACACACGTAACAGTAATTTCTTCAATACACGTAAATTTACAGTAATTACGTTTGTGTACTACACATTGCATATCATTGTGTTTTACACGTGTACAAAATGCT
Unaligned ( gi|10 ): AGAGGTGTGCCCTTTTGTTTCTGCACACCACATTCCTGTGCTTTACAAGACATATGGTGTTCACATTTCCAAGAATTGTCATGTGTGTTGTGACA
Unaligned ( gi|14 ): CGCCTCTTTGTCCTTTGCAAGTGTGCAAAGTTTAAAATGATTCCAGTTATGCTTTGTACAAGACAGCGAATGGA
Alignments
lowQualScore : 11 222 1 111 2222 1 11 1 1 1 111 444444 11 111 111 111 222222222222 222222 1
lowQualScore : 1 1 1 22 88 1 444 7 0 3 0 1 3 8 6 33 99 99 3 44 6 4 111 1111 0 3 33 3 0 3 0 6 0 777 0 1 000000 11 444 0 3 3 2 99 000 111 1 1 66 0 555555555555 111111 5 77 1 2
lowQualScore : . . . .. .. . ... . . . . . . . . .. .. .. . .. . . ... .... . . .. . . . . . . ... . . ...... .. ... . . . . .. ... ... . . .. . ............ ...... . .. . .
lowQualScore : 0 0 0 00 55 0 333 3 7 2 0 0 2 0 7 22 22 22 2 77 0 0 777 2222 0 2 88 2 0 5 0 5 0 555 8 4 444444 00 000 2 3 3 5 22 222 777 7 0 99 7 666666666666 000000 7 99 4 3
consensus : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAACGGACAGACC------------GACCGACAGACCGACCG-----CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
Reference ( family-1343 ) : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTTGACGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATCGTACGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAACGGACAGACC------------GACCGACAGACCGACCN-----CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|1 : TGTACAATGTAGCCCCAAATTAATTCAACAAA---AACTAGAGCTATCACTGAAGGTGATGAATACTCCC
gi|1 : cattttaatcattacaaatccttttttgattaaTCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTACTTTAAAAGTAATGCTCCGG---ACAAGA----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAC--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAACGGACAGACCGACCAACCGACAGACCGACAGACCAACCG-----CAGGGTGACTCCAATATACCC-CTT--C-AAACTTTGTTTGTCGGGGGTATAccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctacttcaaagggcaataactctgtaattagcaagaatagagttatgtttcctgtacactgcacttcctgtcattatattctaccattgtatgaagtttgatgaaattccatccagtactttaaaagtaatgctccggacaagagaaatatatcaaagggcaataactctgtaattagcaagaatacagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgaagcttgatgaaattccatccggtacttttcaagttatgctccggacaagaaaaaatatcaaagggcaataactctgtaattagcaagaatagagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgacgtttgatgaaattccatccagtacttttcaagtgatgctccggacaaggaaaattgcaacggacagaccgaccaaccgacagaccgacagaccaaccgcagggtgactccaatataccccttcaaactttgtttgtcgggggtata
gi|11 : cattttaatcattacaaatccttttttgattaatgtacaatgtagccccaaattaattcaacaaaaactagagctatcactgaaggtgatgaatactcccccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctactGACA-GAACAACTTGGCAA---ACAGATG------------GATCAACAAACAGGCCATCTGACAGAGTGGTTACAATATACCCAGCT--C-ATACTTTGTTTGCAGGGG
gi|12 : cTTACTATGTC-A-CTAGACCTATCACTAAAGATGATTAATACCCCC
gi|13 : agggcatatatagattagactcagttgttaggagtcttactatgCAACCGACAGACC----------------GACAGACCGACCT-----CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATA
gi|15 : gacagacTACAAAG-TTGAACAAATTAT--CTTATTTGGT---TTTCAAGTTATGCTTCGG---ACAa
gi|15 : agcaTTTTCAAGT--TATGC---TTCGGACATGCAAAGTT--tgcaaagttaagaaaat
gi|16 : agcatacaaagttgaacaaattatcttatttggC------------GACCAACAGATCAACCGA----CATACTGATTCTCATTTACCC-CCTATC-AAACTTTGTTTG-CGTGGGTATaagaaaat
gi|17 : gggATT--GCAACGGACAGACC------------GACCGACAGACCGAC
gi|18 : ATCCAGTACTTTAAAAGTAATGCTCCGGAC
gi|2 : TGTAGATTCTAGCTCACAAT--GTTCAGTATATTTAACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAATAGTTTTAAAGTTATGCTCCAGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAAAGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATT-GTATGAAA-CATGATGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGG---ACAATG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATTGTATG-AAGTTTGATGAAAT-TCCATC---CAGTACTTCAAAAGTAATGCTCTGGACAAGGGAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAATAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAAAGGACAGACC------------GACCGACAGACCGACCA-----CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|3 : agggggtatgtgtattAGTACTTTAAAAGTACTGCACCATCCAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGGACACTGCACTTCCTGTCATTATATGCTATCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTTCTTTAAAAGTAATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGGACACTGCACTTCCTCTCATTATATTCTACCATTGTGTG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAA------ATAT--CAAA---GAGCAACAACTCTGTAATTAGCAAAAAAAGTGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAACTTACCTT--CA
gi|4 : ttcatgaactttattaaactgttatcactaaatggcttgaaaTTATGT--CATTGTGCACAACACATCACTTAACTGTATT-TAACATTTGTACGAAG-TTTGAAGGA--AT--GACCTTCTTTGGTTGTCAAGTAATCCTCTGGCAAGCAAAGTTCAGAAAGTTAAAAAAGGGAAAGTAGTTTTGTCA-----AAAAACAGACAGTTATG--CCATTGAACACTACAAATCATCTCGTTGTGTTTTACAAGCGTACACAAG---AAGGAACTATCTGTCTTACGTGAC-TGTCAAGTTATACTCCGTGCATGCAAAGTTCAGAATGTTACAGAAACGGGAAATAATTCTGTa
gi|5 : tGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTGTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--TATGC---TCCGGACAAGGAAAATT--GCAACGGACAGACC------------GACCGACAGACCGACCT-----CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATcaa
gi|6 : CTCGTGTTCTGCACACCACCTCAGTATGCTTTACAAGCGTGCAAAGTCTGAAAGAATT--ATCTTCTGTCGTTTTCAAGTGACATGCATGCCCTGACAAGCAAAGTT--
gi|7 : gacaacatgtataactgaaagttcagaaaaaaaaggaaagtaaaaaaccctccagaagtgtgccCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATAC---TCTGGACAAGCAAAATT--GCAACGGACAGACC------------GACCGACAGACCGACCA-----CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGCCGGGGGTATAcagaaaattacaaaaaagga
gi|9 : TCATCGTGCTTTACAAGT-TTACAAAGATTCAAC-AA--ATAATCT-TCCA-TACTTTTCAAGTTATACTTTGA---GCAAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TCAAGGAATTCTCCGTACATGCAAAGCTAAGAAAATTACAAAATATACACACGTAACAGTAATTTCTTCAATACACGTAAATTTACAGTAATTACGTTTGTGTACTACACATTGCATATCATTGTGTTTTACACGTGTACAAAATGCT
Unaligned ( gi|10 ): AGAGGTGTGCCCTTTTGTTTCTGCACACCACATTCCTGTGCTTTACAAGACATATGGTGTTCACATTTCCAAGAATTGTCATGTGTGTTGTGACA
Unaligned ( gi|14 ): CGCCTCTTTGTCCTTTGCAAGTGTGCAAAGTTTAAAATGATTCCAGTTATGCTTTGTACAAGACAGCGAATGGA
Alignments
lowQualScore : 11 222 1 111 2222 1 11 1 1 1 111 444444 11 111 111 111 222222222222 11 1
lowQualScore : 1 1 1 22 88 1 444 7 0 3 0 1 3 8 6 4 33 99 99 3 44 6 1 111 1111 0 3 33 3 0 1 2 0 6 0 2 777 0 1 000000 11 444 0 2 99 000 111 1 1 66 5 555555555555 33 5 77 1 2
lowQualScore : . . . .. .. . ... . . . . . . . . . .. .. .. . .. . . ... .... . . .. . . . . . . . . ... . . ...... .. ... . . .. ... ... . . .. . ............ .. . .. . .
lowQualScore : 0 0 0 00 55 0 333 3 7 2 0 0 2 0 7 8 22 22 22 2 77 0 0 777 2222 0 2 88 2 0 0 0 0 5 0 0 555 8 4 444444 00 000 2 5 22 222 777 7 0 99 7 666666666666 11 7 99 4 3
consensus : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
Reference ( family-1343 ) : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|1 : TGTACAATGTAGCCCCAAATTAATTCAACAAA---AACTAGAGCTATCACTGAAGGTGATGAATACTCCC
gi|1 : cattttaatcattacaaatccttttttgattaaTCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTACTTTAAAAGTAATGCTCCGG---ACAAGA----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAC--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAA-CGGACAGACCGACCAACCGACAGACCGACAGACCAACCG-CAGGGTGACTCCAATATACCC-CTT--C-AAACTTTGTTTGTCGGGGGTATAccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctacttcaaagggcaataactctgtaattagcaagaatagagttatgtttcctgtacactgcacttcctgtcattatattctaccattgtatgaagtttgatgaaattccatccagtactttaaaagtaatgctccggacaagagaaatatatcaaagggcaataactctgtaattagcaagaatacagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgaagcttgatgaaattccatccggtacttttcaagttatgctccggacaagaaaaaatatcaaagggcaataactctgtaattagcaagaatagagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgacgtttgatgaaattccatccagtacttttcaagtgatgctccggacaaggaaaattgcaacggacagaccgaccaaccgacagaccgacagaccaaccgcagggtgactccaatataccccttcaaactttgtttgtcgggggtata
gi|11 : cattttaatcattacaaatccttttttgattaatgtacaatgtagccccaaattaattcaacaaaaactagagctatcactgaaggtgatgaatactcccccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctactGACA-GAACAACTTGGCAAACAGATGGATC------------AACAAACAGGCCATCTGACAGAGTGGTTACAATATACCCAGCT--C-ATACTTTGTTTGCAGGGG
gi|12 : cTTACTATGTC-A-CTAGACCTATCACTAAAGATGATTAATACCCCC
gi|13 : agggcatatatagattagactcagttgttaggagtcttactatgCAA-CCGACAGACC----------------GACAGACCGACCT-CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATA
gi|15 : gacagacTACAAAG-TTGAACAAATTAT--CTTATTTGGT---TTTCAAGTTATGCTTCGG---ACAa
gi|15 : agcaTTTTCAAGT--TATGC---TTCGGACATGCAAAGTT--tgcaaagttaagaaaat
gi|16 : agcatacaaagttgaacaaattatcttatttggC------------GACCAACAGATCAACCGACATACTGATTCTCATTTACCC-CCTATC-AAACTTTGTTTG-CGTGGGTATaagaaaat
gi|17 : gggATT--GCAA-CGGACAGACC------------GACCGACAGACCGAC
gi|18 : ATCCAGTACTTTAAAAGTAATGCTCCGGAC
gi|2 : TGTAGATTCTAGCTCACAAT--GTTCAGTATATTTAACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAATAGTTTTAAAGTTATGCTCCAGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAAAGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATT-GTATGAAA-CATGATGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGG---ACAATG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATTGTATG-AAGTTTGATGAAAT-TCCATC---CAGTACTTCAAAAGTAATGCTCTGGACAAGGGAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAATAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAA-AGGACAGACC------------GACCGACAGACCGACCA-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|3 : agggggtatgtgtattAGTACTTTAAAAGTACTGCACCATCCAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGGACACTGCACTTCCTGTCATTATATGCTATCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTTCTTTAAAAGTAATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGGACACTGCACTTCCTCTCATTATATTCTACCATTGTGTG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAA------ATAT--CAAA---GAGCAACAACTCTGTAATTAGCAAAAAAAGTGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAACTTACCTT--CA
gi|4 : ttcatgaactttattaaactgttatcactaaatggcttgaaaTTATGT--CATTGTGCACAACACATCACTTAACTGTATT-TAACATTTGTACGAAG-TTTGAAGGA--AT--GACCTTCTTTGGTTGTCAAGTAATCCTCTGGCAAGCAAAGTTCAGAAAGTTAAAAAAGGGAAAGTAGTTTTGTCA-----AAAAACAGACAGTTATG--CCATTGAACACTACAAATCATCTCGTTGTGTTTTACAAGCGTACACAAG---AAGGAACTATCTGTCTTACGTGAC-TGTCAAGTTATACTCCGTGCATGCAAAGTTCAGAATGTTACAGAAACGGGAAATAATTCTGTa
gi|5 : tGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTGTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--TATGC---TCCGGACAAGGAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCT-CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATcaa
gi|6 : CTCGTGTTCTGCACACCACCTCAGTATGCTTTACAAGCGTGCAAAGTCTGAAAGAATT--ATCTTCTGTCGTTTTCAAGTGACATGCATGCCCTGACAAGCAAAGTT--
gi|7 : gacaacatgtataactgaaagttcagaaaaaaaaggaaagtaaaaaaccctccagaagtgtgccCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATAC---TCTGGACAAGCAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCA-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGCCGGGGGTATAcagaaaattacaaaaaagga
gi|9 : TCATCGTGCTTTACAAGT-TTACAAAGATTCAAC-AA--ATAATCT-TCCA-TACTTTTCAAGTTATACTTTGA---GCAAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TCAAGGAATTCTCCGTACATGCAAAGCTAAGAAAATTACAAAATATACACACGTAACAGTAATTTCTTCAATACACGTAAATTTACAGTAATTACGTTTGTGTACTACACATTGCATATCATTGTGTTTTACACGTGTACAAAATGCT
Unaligned ( gi|10 ): AGAGGTGTGCCCTTTTGTTTCTGCACACCACATTCCTGTGCTTTACAAGACATATGGTGTTCACATTTCCAAGAATTGTCATGTGTGTTGTGACA
Unaligned ( gi|14 ): CGCCTCTTTGTCCTTTGCAAGTGTGCAAAGTTTAAAATGATTCCAGTTATGCTTTGTACAAGACAGCGAATGGA
Alignments
lowQualScore : 11 222 1 111 2222 1 11 1 1 1 111 444444 11 111 111 111 222222222222 11 1
lowQualScore : 1 1 1 22 88 1 444 7 0 3 0 1 3 8 6 4 33 99 99 3 44 6 1 111 1111 0 3 33 3 0 1 2 0 6 0 2 777 0 1 000000 11 444 0 2 99 000 111 1 1 66 5 555555555555 33 5 77 1 2
lowQualScore : . . . .. .. . ... . . . . . . . . . .. .. .. . .. . . ... .... . . .. . . . . . . . . ... . . ...... .. ... . . .. ... ... . . .. . ............ .. . .. . .
lowQualScore : 0 0 0 00 55 0 333 3 7 2 0 0 2 0 7 8 22 22 22 2 77 0 0 777 2222 0 2 88 2 0 0 0 0 5 0 0 555 8 4 444444 00 000 2 5 22 222 777 7 0 99 7 666666666666 11 7 99 4 3
consensus : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
Reference ( family-1343 ) : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|1 : TGTACAATGTAGCCCCAAATTAATTCAACAAA---AACTAGAGCTATCACTGAAGGTGATGAATACTCCC
gi|1 : cattttaatcattacaaatccttttttgattaaTCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTACTTTAAAAGTAATGCTCCGG---ACAAGA----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAC--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAA-CGGACAGACCGACCAACCGACAGACCGACAGACCAACCG-CAGGGTGACTCCAATATACCC-CTT--C-AAACTTTGTTTGTCGGGGGTATAccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctacttcaaagggcaataactctgtaattagcaagaatagagttatgtttcctgtacactgcacttcctgtcattatattctaccattgtatgaagtttgatgaaattccatccagtactttaaaagtaatgctccggacaagagaaatatatcaaagggcaataactctgtaattagcaagaatacagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgaagcttgatgaaattccatccggtacttttcaagttatgctccggacaagaaaaaatatcaaagggcaataactctgtaattagcaagaatagagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgacgtttgatgaaattccatccagtacttttcaagtgatgctccggacaaggaaaattgcaacggacagaccgaccaaccgacagaccgacagaccaaccgcagggtgactccaatataccccttcaaactttgtttgtcgggggtata
gi|11 : cattttaatcattacaaatccttttttgattaatgtacaatgtagccccaaattaattcaacaaaaactagagctatcactgaaggtgatgaatactcccccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctactGACA-GAACAACTTGGCAAACAGATGGATC------------AACAAACAGGCCATCTGACAGAGTGGTTACAATATACCCAGCT--C-ATACTTTGTTTGCAGGGG
gi|12 : cTTACTATGTC-A-CTAGACCTATCACTAAAGATGATTAATACCCCC
gi|13 : agggcatatatagattagactcagttgttaggagtcttactatgCAA-CCGACAGACC----------------GACAGACCGACCT-CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATA
gi|15 : gacagacTACAAAG-TTGAACAAATTAT--CTTATTTGGT---TTTCAAGTTATGCTTCGG---ACAa
gi|15 : agcaTTTTCAAGT--TATGC---TTCGGACATGCAAAGTT--tgcaaagttaagaaaat
gi|16 : agcatacaaagttgaacaaattatcttatttggC------------GACCAACAGATCAACCGACATACTGATTCTCATTTACCC-CCTATC-AAACTTTGTTTG-CGTGGGTATaagaaaat
gi|17 : gggATT--GCAA-CGGACAGACC------------GACCGACAGACCGAC
gi|18 : ATCCAGTACTTTAAAAGTAATGCTCCGGAC
gi|2 : TGTAGATTCTAGCTCACAAT--GTTCAGTATATTTAACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAATAGTTTTAAAGTTATGCTCCAGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAAAGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATT-GTATGAAA-CATGATGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGG---ACAATG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATTGTATG-AAGTTTGATGAAAT-TCCATC---CAGTACTTCAAAAGTAATGCTCTGGACAAGGGAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAATAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAA-AGGACAGACC------------GACCGACAGACCGACCA-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|3 : agggggtatgtgtattAGTACTTTAAAAGTACTGCACCATCCAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGGACACTGCACTTCCTGTCATTATATGCTATCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTTCTTTAAAAGTAATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGGACACTGCACTTCCTCTCATTATATTCTACCATTGTGTG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAA------ATAT--CAAA---GAGCAACAACTCTGTAATTAGCAAAAAAAGTGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAACTTACCTT--CA
gi|4 : ttcatgaactttattaaactgttatcactaaatggcttgaaaTTATGT--CATTGTGCACAACACATCACTTAACTGTATT-TAACATTTGTACGAAG-TTTGAAGGA--AT--GACCTTCTTTGGTTGTCAAGTAATCCTCTGGCAAGCAAAGTTCAGAAAGTTAAAAAAGGGAAAGTAGTTTTGTCA-----AAAAACAGACAGTTATG--CCATTGAACACTACAAATCATCTCGTTGTGTTTTACAAGCGTACACAAG---AAGGAACTATCTGTCTTACGTGAC-TGTCAAGTTATACTCCGTGCATGCAAAGTTCAGAATGTTACAGAAACGGGAAATAATTCTGTa
gi|5 : tGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTGTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--TATGC---TCCGGACAAGGAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCT-CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATcaa
gi|6 : CTCGTGTTCTGCACACCACCTCAGTATGCTTTACAAGCGTGCAAAGTCTGAAAGAATT--ATCTTCTGTCGTTTTCAAGTGACATGCATGCCCTGACAAGCAAAGTT--
gi|7 : gacaacatgtataactgaaagttcagaaaaaaaaggaaagtaaaaaaccctccagaagtgtgccCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATAC---TCTGGACAAGCAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCA-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGCCGGGGGTATAcagaaaattacaaaaaagga
gi|9 : TCATCGTGCTTTACAAGT-TTACAAAGATTCAAC-AA--ATAATCT-TCCA-TACTTTTCAAGTTATACTTTGA---GCAAG
blockSeqs : G T C AC . C TTT A T A C C T A G CA TT AA A GG A T CAA TTCA G T AC T A T T C T A A TTA G TTCAGA TA AAC C TT GAC ATG T A TG A . GA A AT A C
blockSeqs : G TC . T . G C . . T TG . . A GG T T . . . T . T . G T . C . A . G T . . A . T . A C . . . GA . . A T
blockSeqs : . . T T . . T TG . . A AG G A . . . . . . . A C . . . G . C . . . C . G . A G . . . T . . . T
blockSeqs : . . . T AG . . C TT A A . A . . . C . T . A G . . . A . . . T
blockSeqs : . C C . . . A . T . . . G . A C . . . T . . . C
blockSeqs : . C . . . A . . . .
blockSeqs : . .
blockSeqCons : ************
originalCons : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
finalCons : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TCAAGGAATTCTCCGTACATGCAAAGCTAAGAAAATTACAAAATATACACACGTAACAGTAATTTCTTCAATACACGTAAATTTACAGTAATTACGTTTGTGTACTACACATTGCATATCATTGTGTTTTACACGTGTACAAAATGCT
Unaligned ( gi|10 ): AGAGGTGTGCCCTTTTGTTTCTGCACACCACATTCCTGTGCTTTACAAGACATATGGTGTTCACATTTCCAAGAATTGTCATGTGTGTTGTGACA
Unaligned ( gi|14 ): CGCCTCTTTGTCCTTTGCAAGTGTGCAAAGTTTAAAATGATTCCAGTTATGCTTTGTACAAGACAGCGAATGGA
Alignments
lowQualScore : 11 222 1 111 2222 1 11 1 1 1 111 444444 11 111 111 111 222222222222 11 1
lowQualScore : 1 1 1 22 88 1 444 7 0 3 0 1 3 8 6 4 33 99 99 3 44 6 1 111 1111 0 3 33 3 0 1 2 0 6 0 2 777 0 1 000000 11 444 0 2 99 000 111 1 1 66 5 555555555555 33 5 77 1 2
lowQualScore : . . . .. .. . ... . . . . . . . . . .. .. .. . .. . . ... .... . . .. . . . . . . . . ... . . ...... .. ... . . .. ... ... . . .. . ............ .. . .. . .
lowQualScore : 0 0 0 00 55 0 333 3 7 2 0 0 2 0 7 8 22 22 22 2 77 0 0 777 2222 0 2 88 2 0 0 0 0 5 0 0 555 8 4 444444 00 000 2 5 22 222 777 7 0 99 7 666666666666 11 7 99 4 3
consensus : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
Reference ( family-1343 ) : NNNNNNNNNNNNNNNNTGTANANTNTAGCCCNNAATTAGTTCANTATATC-AACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAGTACTTTAAAAGTAATGCTCCGGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGTACACTGCACTTCCTNTCATTATATTCTACCATT-GTACGAAG-TTCGACGAA--AT--TCCATCCGGTACTTTTCAAGTNATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGNACACTGCACTTCCTCTCATTATATTCTACCATTGTACG-AAGCTTGATGAAAT-TCCGTC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--NATGC---TCCGGACAAGNAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCG-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|1 : TGTACAATGTAGCCCCAAATTAATTCAACAAA---AACTAGAGCTATCACTGAAGGTGATGAATACTCCC
gi|1 : cattttaatcattacaaatccttttttgattaaTCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTACTTTAAAAGTAATGCTCCGG---ACAAGA----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAC--AGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAA-CGGACAGACCGACCAACCGACAGACCGACAGACCAACCG-CAGGGTGACTCCAATATACCC-CTT--C-AAACTTTGTTTGTCGGGGGTATAccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctacttcaaagggcaataactctgtaattagcaagaatagagttatgtttcctgtacactgcacttcctgtcattatattctaccattgtatgaagtttgatgaaattccatccagtactttaaaagtaatgctccggacaagagaaatatatcaaagggcaataactctgtaattagcaagaatacagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgaagcttgatgaaattccatccggtacttttcaagttatgctccggacaagaaaaaatatcaaagggcaataactctgtaattagcaagaatagagttatgtttcttgtacactgcacttcctctcattatattctaccattgtatgacgtttgatgaaattccatccagtacttttcaagtgatgctccggacaaggaaaattgcaacggacagaccgaccaaccgacagaccgacagaccaaccgcagggtgactccaatataccccttcaaactttgtttgtcgggggtata
gi|11 : cattttaatcattacaaatccttttttgattaatgtacaatgtagccccaaattaattcaacaaaaactagagctatcactgaaggtgatgaatactcccccccccctccccagaataccgcctttacgaggtgtaggttgttgtaccaaaagacgaaagccgtaatatcgagtaagaaacaataagtctttgctactGACA-GAACAACTTGGCAAACAGATGGATC------------AACAAACAGGCCATCTGACAGAGTGGTTACAATATACCCAGCT--C-ATACTTTGTTTGCAGGGG
gi|12 : cTTACTATGTC-A-CTAGACCTATCACTAAAGATGATTAATACCCCC
gi|13 : agggcatatatagattagactcagttgttaggagtcttactatgCAA-CCGACAGACC----------------GACAGACCGACCT-CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATA
gi|15 : gacagacTACAAAG-TTGAACAAATTAT--CTTATTTGGT---TTTCAAGTTATGCTTCGG---ACAa
gi|15 : agcaTTTTCAAGT--TATGC---TTCGGACATGCAAAGTT--tgcaaagttaagaaaat
gi|16 : agcatacaaagttgaacaaattatcttatttggC------------GACCAACAGATCAACCGACATACTGATTCTCATTTACCC-CCTATC-AAACTTTGTTTG-CGTGGGTATaagaaaat
gi|17 : gggATT--GCAA-CGGACAGACC------------GACCGACAGACCGAC
gi|18 : ATCCAGTACTTTAAAAGTAATGCTCCGGAC
gi|2 : TGTAGATTCTAGCTCACAAT--GTTCAGTATATTTAACTAGAGCTATCACTGAAGGTGATGAATACCCCCAAACGCCGCCATGACAGAAAATGGTTTACCATTGTATGAAGTTTTATTAAATTATATCCAATAGTTTTAAAGTTATGCTCCAGACAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAAAGTTATGTTTC-TTGTACACTGCACTTCCTCTCATTATATTCTACCATT-GTATGAAA-CATGATGAA--AT--TCCATCCGGTACTTTTCAAGTTATGCTCCGG---ACAATG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-CTGTACACTGCACTTCCTGTCATTATATTCTACCATTGTATG-AAGTTTGATGAAAT-TCCATC---CAGTACTTCAAAAGTAATGCTCTGGACAAGGGAAAT-----ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAATAATAGAGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATGC---TCCGGACAAGGAAAATT--GCAA-AGGACAGACC------------GACCGACAGACCGACCA-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGTCGGGGGTATA
gi|3 : agggggtatgtgtattAGTACTTTAAAAGTACTGCACCATCCAAGGGAAATATATCAAAGGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTTTC-TTGGACACTGCACTTCCTGTCATTATATGCTATCATT-GTATGAAG-TTTGATGAA--AT--TCCATCCAGTTCTTTAAAAGTAATGCTCCGG---ACAAGG----GAAATATATCAAAGGGCAA-TAACTCTGTAATTAGCAAGAATAG--AGTTATGTTTC-TTGGACACTGCACTTCCTCTCATTATATTCTACCATTGTGTG-AAGCTTGATGAAAT-TCCATC---CGGTACTTTTCAAGTTATGCTCCGGACAAGGAAAA------ATAT--CAAA---GAGCAACAACTCTGTAATTAGCAAAAAAAGTGTTATGTTTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAACTTACCTT--CA
gi|4 : ttcatgaactttattaaactgttatcactaaatggcttgaaaTTATGT--CATTGTGCACAACACATCACTTAACTGTATT-TAACATTTGTACGAAG-TTTGAAGGA--AT--GACCTTCTTTGGTTGTCAAGTAATCCTCTGGCAAGCAAAGTTCAGAAAGTTAAAAAAGGGAAAGTAGTTTTGTCA-----AAAAACAGACAGTTATG--CCATTGAACACTACAAATCATCTCGTTGTGTTTTACAAGCGTACACAAG---AAGGAACTATCTGTCTTACGTGAC-TGTCAAGTTATACTCCGTGCATGCAAAGTTCAGAATGTTACAGAAACGGGAAATAATTCTGTa
gi|5 : tGGTACTTTTCAAGTTATGCTCCGGACAAGAAAAA------ATAT--CAAA---GGGCAATAACTCTGTAATTAGCAAGAATAGAGTTATGTGTCTTGTACACTGCACTTCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--TATGC---TCCGGACAAGGAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCT-CAGGGTGACTCCAGTATACCC-CCT--CAAAACTTCGTTTGTCGGGGGTATcaa
gi|6 : CTCGTGTTCTGCACACCACCTCAGTATGCTTTACAAGCGTGCAAAGTCTGAAAGAATT--ATCTTCTGTCGTTTTCAAGTGACATGCATGCCCTGACAAGCAAAGTT--
gi|7 : gacaacatgtataactgaaagttcagaaaaaaaaggaaagtaaaaaaccctccagaagtgtgccCCTCTCATTATATTCTACCATTGTATGACGTTTGATGAAATTCCATC--CAGTACTTTTCAAGT--GATAC---TCTGGACAAGCAAAATT--GCAA-CGGACAGACC------------GACCGACAGACCGACCA-CAGGGTGACTCCAATATACCC-CCT--C-AAACTTCGTTTGCCGGGGGTATAcagaaaattacaaaaaagga
gi|9 : TCATCGTGCTTTACAAGT-TTACAAAGATTCAAC-AA--ATAATCT-TCCA-TACTTTTCAAGTTATACTTTGA---GCAAG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TCAAGGAATTCTCCGTACATGCAAAGCTAAGAAAATTACAAAATATACACACGTAACAGTAATTTCTTCAATACACGTAAATTTACAGTAATTACGTTTGTGTACTACACATTGCATATCATTGTGTTTTACACGTGTACAAAATGCT
Unaligned ( gi|10 ): AGAGGTGTGCCCTTTTGTTTCTGCACACCACATTCCTGTGCTTTACAAGACATATGGTGTTCACATTTCCAAGAATTGTCATGTGTGTTGTGACA
Unaligned ( gi|14 ): CGCCTCTTTGTCCTTTGCAAGTGTGCAAAGTTTAAAATGATTCCAGTTATGCTTTGTACAAGACAGCGAATGGA