lowQualScore : 1 11 1 22 666666 1 7777 1111 1111111 1 1 1 1 1 1 77777777777777 2222222 77777777777777777777777777 1111111 33333333 555555555 555 222 77777777 1 1 1 1 55 1 1 1 1
lowQualScore : 2 3 8 66 6 33 3 555555 7 4 4 4 5 6666 777 0000 4 8888888 1 66 0 3 4 4 2 6 5 4 5 7 2 66 1 1 5 6 5 4 8 0 22222222222222 1 6666666 5 88888888888888888888888888 8888888 5 5 9 66 66666666 2 222222222 333 4 4 666 6 11111111 4 4 5 6 5 5 7 6 55 6 6 5 6 7 5 55 88 6 6 2 3 6 6 6 7 6
lowQualScore : . . . .. . .. . ...... . . . . . .... ... .... . ....... . .. . . . . . . . . . . . .. . . . . . . . . .............. . ....... . .......................... ....... . . . .. ........ . ......... ... . . ... . ........ . . . . . . . . .. . . . . . . .. .. . . . . . . . . .
lowQualScore : 5 3 3 77 3 33 2 000000 3 0 1 1 0 9999 888 6666 3 8888888 9 11 9 1 2 4 3 0 0 4 0 0 9 11 9 9 0 0 0 4 6 0 66666666666666 4 0000000 2 88888888888888888888888888 2222222 8 5 2 00 22222222 2 000000000 777 0 0 000 0 00000000 0 0 0 0 0 0 0 0 00 0 0 0 0 0 0 55 55 0 0 5 0 0 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCNCTCCCTTTGG-GTATCTTATTTGTTAATTTTTTACTTAATGAACACT----GAACTATTACATAGNGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCATTT--AAGGTCATCTAGGCCAAAAGC-CCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTT-AAACAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCTCCAA------CTTCTACN------TATGCCCGACCTCTGAATATGTAGAGTAGTCAGGN-ATNTNCAGTNNTGCGATACATGTGTCTNCTGTCNAGAAGTCTACTAGCCTACCGC--------TAAATCGCCTAGC-GATCTGAAGGACGATGACT--CCCNGCTCGCCANAATGACCATTTTTAAAGCAAAAGGATTANTC-AAAACTTNAACTNGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATCGATAACATTTTGGCATATTTTGTTTTACCATGTTTT--TTATCTTCGGAGAATTTAGACCTATTAAACGTGTATATGTTACATGTAAACATACAAGTAAGTATAAGNNTTNAATTCGGGATTAAAACAACGATANAGGCCGNTTTGGAAGGCGAGGTAGAGTTCTATATGTTAAAA
Reference ( gi|1 ) : GCTGTTTTAACAAACAAGTGTGAGACAATTTTGAAGCGATTTCATTGGATGTCAAATGAGGTTAAACATTCTGCGGTCGTTCCCTTTGG-GTTTCTTAAATGATACATTTTTACTTAATGAACACTTAATAAACTATTACATAGTGATTTTACTATTCCACCATGTCGGACGTTTTAAGATTGAACAATGAAAGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATTTCCAATTG------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCATTT--AAGGTCATCTAAGCCAAAGGC-CAAATATGAGGTATGCAGACCGCCATATATATGA-TATGCGTTGTCGTTCCGCCTGCTTACCT--TATTGTTTACCTTATTCTTATATGCATGCCTATTTT-AAACAAACTTACACATAAATATGATATCACTTTGTTGTACGACCAATACT------------CTTCTACA------TATACCCCACCTCTGAATATGTAGAGTAGTCAAGT-ATTTTCAGTGATGCG--ACACGTGTCTACTGTCAAGAAGTCTAATAGCCTACCGC--------TAAATTGCCTAGCTAATCTGAAGAACGATGACTAGGCCTGCTCGCCAAAATGACAA-TTTCAAAGCAAAAGGGCAAAACAAAAACTTAAACTTGCCTGATTCCGGCATTTTCATTGGGGGTTAATAGACCTGATTCAGGAGATATCAAGCTCTGGGATAGAATAATACACAATAAAGAGAAGACGTGTCCACAGTTTTATTGCACACAACTGGACATAATTATTTCGTTCTTATTTTCATAGAACGTGTTCTGTACCACTTTCCCGCCCTCTGTACCGATCACATTTTGCCATTTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACTTATTAAATGTTTATATGTTATATGTTAACATACAAGTACATATAAGGATTGGATTTGGGATTAAAACAACGACAGAGGCCGATTTAGAAGGCGAGGTAAAGCTCTAAATGTCAAAA
gi|15 : TCTGCGGTCTTTTCTTTTTACATTTCATTAATGCTAATTTTTTACTAAATGAACAC-----AAACTATTAC-TAG
gi|13 : CGGTCGCTCCCTTTGG-GTATCTTATTTGTTAAATTTTTACTTAATGAACTCT-----AACTATTAC
gi|16 : ctgtcttaatatccccaatgtaagaagcataacctcttaaatcttttagtaaatattcaacaattaggaaatccTTTGG-GTATCTTATTTGTTAATTTTTTACTTTATG-ACACT-----AACTATTACtaa
gi|4 : TTTTTACTTAATGAACACTAAATGAACTATTACATAGTGATTTT-CTATTCCATCGTGTCGGGCGTTTTGAGAGTGAACAA----ATGTATTTATCTATA---ATACTTTGTC----ATAATGTGTTCATTCAATTTCCAATTA------TTTTGATTTGCACTATATAATGTCT----------CAACTATGCGAATTT--AAGGTAATCTAAGCCAAAAGC-CCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCATTGTCGGTCCAACTGTTCACCT--TATTGTTTACCTTATTGTTATGTGCATGCATAGTTT-GAACAAACTTACACATCAATATGATACCACTTTGTTTTAAGACCATTATTCTCCAA------CTTCTACATAATTTTATGCTCCACCTCTGAATATGTACAGTAGTC----------------TAC--------TGTCT-------AGAAGTCTACTAGCCAACTGC--------TAAATCGCCTACATGATCTGAAGACCGATGACTtaag
gi|14 : CAAAGAGATTGTACTATTCCGCTGTGTTTGGCATTTTTACAGTGAAC----AAAGGTATTTATGTGCATGCATATTT
gi|5 : ataaatatatatactgctaacttaaagtcGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ACACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACATCTTTAAAAGTCTCAACCATGCGCATTT--AATGTCATCTAAGCCAAAAGC-CCAATATGAG------------TCAAATGTAGGA-TATGCGTTGTTGGTCCGCCTGTTTAGCT--TATTG-TTACATTTTTGTAATGTGCATGCATATTTTAAAACAAACTTACACATAAATATGATACCACTTTATTGTAATACCAATA---------------TTCTACC------AATATCCAACCTCGGAATATATAGAGTAGTCAGAA-ATGTTCAGTTTTGCGATACATGTGCCTACTGTCAAG-AGTCTACTAGTCTACTGC--------TATATCGCCGAGCGGATCTGAAGAACGATGCCTAta
gi|3 : TTTACTATTCCACCGTGTTGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTGCA---ATACTTCGTCTTTAAAAATGCA---ATTCAATCTCAAATTA------TTTTGATTTGCACTATGTAACGTCT-----A-----AACCATGCGCATTT--AAGGTCATCTAGGCCAAAAGC-CCAATATAAGTTATACAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTATCT--TATTGTTTATTTTATTGTTATGTGCATGCATATTTT-AAACAAACTTACACATAAATATAATAGCACTTTGTTTTACGACCAATATTCTCCAACCTATGCTTCTACA------TATGCCCGCCCTCTGAATATGTAGAGTATTC-AGTAATTTGCAGTGATGCGATACATGTGTCTTTTGTCTAGAAGTCTTATAG-CTA-CGT--------TAAATTGCCTAGC---------GGATGATAATT--CCCAGCTCGCCAAAATGACCATTTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTAGACTGA
gi|8 : TTTATTATTCCACCGTGGCGGGCGTTTTAAGAGTGAACAA----AGGTATATATCTACA---ATACTTCGTC----ACACTGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTTACGTCTTTAAAAGTCTCAAACATGCGCATTT--AAAGTCATCTAAGCCAAAAGC-CCAATATGAGGTATACAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGC--------------TTGTTTACCTTATTGTTATGTGCATGCATATTTT-AAACAAACGTACACATACATAGGATA
gi|9 : TTTACTATTCCACCGTGTCGGGCGTTTTTAGAGTTAACAA----AGGTATTTATCTACA---ATACCTCGTC----ACAATGTGTCCATTTAACCTCGAATTA------TTTTGATTTGCACTATATAACATCTTTAAAAGTCTCAAC------------------CATCTGGACCAAAGGCGCAA--ATGATGTATGCAGGTCGCCATCTGTAGGACCAGGCGTTGTCGGTCTGCCTTTTTACCT--TATTG------------TTATGTGCATGCATATTTT-AAACAAACTTACACATAGATATAATACCc
gi|2 : ATTACATCGTGTCGGGCGTTTTAACAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTACACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCATTT--AAAGTCATCTG-GCCAAAAGC-CCAATACGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTACCT--TATTGTTTACTTTACTGATATGTGCATGTATATTTT-AAACAAACTTACACATAAATATAATAGCACTTTGCTTTACGACCAATTTT------------CTCCAACN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAAATCACCTAGC---------GGATGATAATT--CCCTGCTCGCCATAATGACCA-TTTTAAAGCAAAAGGATTATTC-AAAACTTTAACTTGACTGgtt
gi|7 : CATGTCGAACGTTTTAAGTGTGAACGA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTTATTCAATCTCTAATTACTAGAATTTTGTTTTGCACTATGTAACGTCTTTAAAAGTCTCAATCATGCGCATTT--AAAGTTATTTAGGCTAAAAGC-CCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCTTGTTTAGCT--TATTGTTTACCTAATTGTTATGTGCATTCATATTTC-AAACAAACTTACACATAAATATGATACCACTTGGTTTTACGACCAATATT------------CTCCAACT------TCTACnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatacaaaataaaaa
gi|10 : TGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCATTCTTCCATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAATTATGCACATTTTTAAGGCAATCTTGGCCAAAAGC-CCAGTATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTATAACC--TATTGTT------------ATGTGCATGTATATTTT-AAACAAACTTACAAATAAATATGATA
gi|11 : ggGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGGCTCAAGCATGCACATTT--AAGTTCATCTAAGCCAAAAGT-CCAATATGAGGTACGCAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGCCTGTTTACCTTATATTGTTTACCTTATTGTTATGTGCATGCATATTTA-AATCAAACTTACACATAAATCTGATACCc
gi|12 : TGTATCGATAACATTTTGGCATATTTTGTTTTACCATGTTTT--TTATCTTCGGAGAATTTAGACCTATTAAACGTGTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGCTTT
gi|6 : GTAAACATACAAGTAAGTATAAGCCTTCAATTCGGAATTAAAACAACGATATAGGCCGATTTGGAAGGCGAGGTAGAGTTCTATATGTTAAAA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GCGTCTGTACCATAAGTGCGTTTTACAGGCGTGATAAAG
Alignments
lowQualScore : 11 4444444 111 111111 111111 2222222 111111111 333333333 11 2 1 22
lowQualScore : 11 2 33 1 4 0 9999999 111 3 1 8888 777 9999 111111 0 55 4 0 77777 4 6 999999 3333333 5 5 333333333 77 7 33 99 3 2 2 5 8 222222222 11 1 1 3 1 3 1 1 3 2 4 77 2 0 22 1 1 1 4
lowQualScore : .. . .. . . . ....... ... . . .... ... .... ...... . .. . . ..... . . ...... ....... . . ......... .. . .. .. . . . . . ......... .. . . . . . . . . . . .. . . .. . . . .
lowQualScore : 77 5 88 2 0 8 5555555 777 2 0 5555 000 4444 555555 8 55 0 9 88888 0 7 222222 0000000 4 4 444444444 66 6 66 22 8 8 2 4 0 222222222 00 0 0 7 0 3 0 0 0 5 0 55 5 7 00 0 0 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----G--AACT---ATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTAC------ATATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA-GC-GATCTGAAGAACGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
Reference ( family-1339 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCNCTCCCTTTGGGTATCTTATT--TGTTAATTTTTTACTTAATGAACACT----G--AACT---ATTACATAGNGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTAC------NTATGCCCGACCTCTGAATATGTAGAGTAGTCAGGNATNTNCAGTNNTGCGATACATGTGTCTNCTGTCNAGAAGTCTACTAGCCTACCGCTAAATCGCCTA-GC-GATCTGAAGGACGATGACT--CCCNGCTCGCCANAATGACCATTTTTAAAGCAAAAGGATTANTC-AAAACTTNAACTNGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATCGATAACATTTTGGCATATTTTGTTTTACCATGTTTT--TTATCTTCGGAGAATTTAGACCTATTAAACGTGTATATGTTACATGTAAACATACAAGTAAGTATAAGNNTTNAATTCGGGATTAAAACAACGATANAGGCCGNTTTGGAAGGCGAGGTAGAGTTCTATATGTTAAAA
gi|1 : TCTGCGGTCGTTCCCTTTGGGTTTCTTAAA--TGATACATTTTTACTTAATGAACACTTAATA--AACT---ATTACATAGTGATTTTACTATTCCACCATGTCGGACGTTTTAAGATTGAACAATGAAAGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATTTCCAATTG------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAAGCCAAAGGCCAAATATGAGGTATGCAGACCGCCATATATATGA-TATGCGTTGTCGTTCCGCCTGCTTACCT--TATTGTTTACCTTATTCTTATATGCATGCCTATTTTAAA-CAAACTTACACATAAATATGATATCACTTTGTTGTACGACCAATACT-------------CTTCTAC------ATATACCCCACCTCTGAATATGTAGAGTAGTCAAGTATTTTCAGTGATGCG--ACACGTGTCTACTGTCAAGAAGTCTAATAGCCTACCGCTAAATTGCCTA-GCTAATCTGAAGAACGATGACTAGGCCTGCTCGCCAAAATGACAA-TTTCAAAGCAAAAGGGCAAAACAAAAACTTAAACTTGCCTGA
gi|1 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacatTGTACCGATCACATTTTGCCATTTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACTTATTAAATGTTTATATGTTATATGTTAACATACAAGTACATATAAGGATTGGATTTGGGATTAAAACAACGACAGAGGCCGATTTAGAAGGCGAGGTAAAGCTCTAAATGTCAAAAttccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctctgtaccgatcacattttgccatttttcgttttaccatgttttttttatcttcggagaatttagacttattaaatgtttatatgttatatgttaacatacaagtacatataaggattggatttgggattaaaacaacgacagaggccgatttagaaggcgaggtaaagctctaaatgtcaaaa
gi|10 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacattctgcggtcgttccctttgggtttcttaaatgatacatttttacttaatgaacacttaataaactattacatagtgattttactattccaccatgtcggacgttttaagattgaacaatgaaaggtatttatctacaatacttcgtcacaatgtgttcattcaatttccaattgttttgatttgcactatgtaacgtctttaaaagtctcaaccatgcgcatttaaggtcatctaagccaaaggccaaatatgaggtatgcagaccgccatatatatgatatgcgttgtcgttccgcctgcttaccttattgtttaccttattcttatatgcatgcctattttaaacaaacttacacataaatatgatatcactttgttgtacgaccaatactcttctacatataccccacctctgaatatgtagagtagtcaagtattttcagtgatgcgacacgtgtctactgtcaagaagtctaatagcctaccgctaaattgcctagctaatctgaagaacgatgactaggcctgctcgccaaaatgacaatttcaaagcaaaagggcaaaacaaaaacttaaacttgcctgattccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctcGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCATTCTTCCATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAATTATGCACATTTTTAAGGCAATCTTGGCCAAAAGCCCAGTATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTATA-------------ACC-TATTGTTATGTGCATGTATATTTTAAA-CAAACTTACAAATAAATATGATAC
gi|11 : gGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGGCTCAAGCATGCACA--TTTAAGTTCATCTAAGCCAAAAGTCCAATATGAGGTACGCAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGCCTGTTTACCTTATATTGTTTACCTTATTGTTATGTGCATGCATATTTAAAT-CAAACTTACACATAAATCTGATACC
gi|12 : TGTATCGATAACATTTTGGCATATTTTGTTTTACCATGTTTT--TTATCTTCGGAGAATTTAGACCTATTAAACGTGTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGCTTT
gi|13 : CGGTCGCTCCCTTTGGGTATCTTATT--TGTTAAATTTTTACTTAATGAACTCT-------AACT---ATTAC
gi|14 : ctgtcttaatatccccaatgtaagaagcataacctcttaaatcttttagtaaatattcaacaattaggaaatccATACT----GCTAACTTAAAGTCCAAAGAGATTGTACTATTCCGCTGTGTTTGGCATTTTTACAGTGAACAA----AGGTATTTATGTGCATGCATATTTtaa
gi|15 : ataaatatatTCTGCGGTCTTTTCTTTTTA-CATTTCATTAATGCTAATTTTTTACTAAATGAACAC-----A--AACT---ATTAC-TAGta
gi|16 : TTTGGGTATCTTATT--TGTTAATTTTTTACTTTATG-ACACT-------AACT---ATTAC
gi|2 : ATTACATCGTGTCGGGCGTTTTAACAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTACACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAAGTCATCT-GGCCAAAAGCCCAATACGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTACCT--TATTGTTTACTTTACTGATATGTGCATGTATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGCTTTACGACCAATTTTCT-CCAA------CNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAAATCACCTA-GC---------GGATGATAATT--CCCTGCTCGCCATAATGACCA-TTTTAAAGCAAAAGGATTATTC-AAAACTTTAACTTGACTGtaag
gi|3 : TTTACTATTCCACCGTGTTGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTGCA---ATACTTCGTCTTTAAAAATGCA---ATTCAATCTCAAATTA------TTTTGATTTGCACTATGTAACGTCT-----A-----AACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATAAGTTATACAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTATCT--TATTGTTTATTTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGTTTTACGACCAATATTCT-CCAACCTATGCTTCTAC------ATATGCCCGCCCTCTGAATATGTAGAGTATTCAGTAATTTGCAGTGATGCGATACATGTGTCTTTTGTCTAGAAGTCTTATAG-CTA-CGTTAAATTGCCTA-GC---------GGATGATAATT--CCCAGCTCGCCAAAATGACCATTTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatacaaaataaaaa
gi|4 : TTTTTACTTAATGAACACTAAATG--AACT---ATTACATAGTGATTTT-CTATTCCATCGTGTCGGGCGTTTTGAGAGTGAACAA----ATGTATTTATCTATA---ATACTTTGTC----ATAATGTGTTCATTCAATTTCCAATTA------TTTTGATTTGCACTATATAATGTCT----------CAACTATGCGAA--TTTAAGGTAATCTAAGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCATTGTCGGTCCAACTGTTCACCT--TATTGTTTACCTTATTGTTATGTGCATGCATAGTTTGAA-CAAACTTACACATCAATATGATACCACTTTGTTTTAAGACCATTATTCT-CCAA------CTTCTACATAATTTTATGCTCCACCTCTGAATATGTACAGTAGTC--------------------TAC---TGTCT-------AGAAGTCTACTAGCCAACTGCTAAATCGCCTACAT-GATCTGAAGACCGATGACT--
gi|5 : GATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ACACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACATCTTTAAAAGTCTCAACCATGCGCA--TTTAATGTCATCTAAGCCAAAAGCCCAATATGAG------------TCAAATGTAGGA-TATGCGTTGTTGGTCCGCCTGTTTAGCT--TATTGTT-ACATTTTTGTAATGTGCATGCATATTTTAAAACAAACTTACACATAAATATGATACCACTTTATTGTAATACCAATATTCTACCAA--------------------TAT--CCAACCTCGGAATATATAGAGTAGTCAGAAATGTTCAGTTTTGCGATACATGTGCCTACTGTCAAG-AGTCTACTAGTCTACTGCTATATCGCCGA-GCGGATCTGAAGAACGATGCCT--
gi|6 : GTAAACATACAAGTAAGTATAAGCCTTCAATTCGGAATTAAAACAACGATATAGGCCGATTTGGAAGGCGAGGTAGAGTTCTATATGTTAAAAa
gi|7 : atatttaatatactattaaccctaCATGTCGAACGTTTTAAGTGTGAACGA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTTATTCAATCTCTAATTACTAGAATTTTGTTTTGCACTATGTAACGTCTTTAAAAGTCTCAATCATGCGCA--TTTAAAGTTATTTAGGCTAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCTTGTTTAGCT--TATTGTTTACCTAATTGTTATGTGCATTCATATTTCAAA-CAAACTTACACATAAATATGATACCACTTGGTTTTACGACCAATATTCT-CCAA------CTTCTAC------tcggctcacgtctgaacagaagaaaactattttcaaagaaaccgtaacccgatgtttatgagatatcgtcttcaagtttaagcttcaaaaacaggtcgaactattgatttagacttaaaaaacaattttgctaatgaataatcacatatttcttaccttttacgtgtttttacgtcaacttactctgaaccggaagttgaacgtatggtacaggcgtctgtaccataagtgcgtttagcaggcatgttt
gi|8 : TTTATTATTCCACCGTGGCGGGCGTTTTAAGAGTGAACAA----AGGTATATATCTACA---ATACTTCGTC----ACACTGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTTACGTCTTTAAAAGTCTCAAACATGCGCA--TTTAAAGTCATCTAAGCCAAAAGCCCAATATGAGGTATACAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGC--------------TTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACGTACACATACATAGGATAC
gi|9 : TTTACTATTCCACCGTGTCGGGCGTTTTTAGAGTTAACAA----AGGTATTTATCTACA---ATACCTCGTC----ACAATGTGTCCATTTAACCTCGAATTA------TTTTGATTTGCACTATATAACATCTTTAAAAGTCTCAAC------------------CATCTGGACCAAAGGCGCAA-ATGATGTATGCAGGTCGCCATCTGTAGGACCAGGCGTTGTCGGTCTGCCT-T-------------TTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAGATATAATACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCGTCTGTACCATAAGTGCGTTTTACAGGCGTGATAAAG
Alignments
lowQualScore : 11 4444444 111 111111 111111 222222 1111 333333333 11 1 1 11
lowQualScore : 2 33 1 1 0 9999999 111 3 8888 777 9999 111111 0 55 4 0 77777 4 6 999999 333333 5 1 0000 333 55 7 66 88 3 2 1 5 8 222222222 11 3 3 1 1 1 88 1 1
lowQualScore : . .. . . . ....... ... . .... ... .... ...... . .. . . ..... . . ...... ...... . . .... ... .. . .. .. . . . . . ......... .. . . . . . .. . .
lowQualScore : 5 88 2 0 8 5555555 777 2 5555 000 4444 555555 8 55 0 9 88888 0 7 222222 000000 4 0 0000 000 22 6 44 44 0 8 0 4 0 222222222 00 3 3 0 0 0 55 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----G--AACT---ATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA-GC-GATCTGAAGAACGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
Reference ( family-1339 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----G--AACT---ATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA-GC-GATCTGAAGAACGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
gi|1 : TCTGCGGTCGTTCCCTTTGGGTTTCTTAAA--TGATACATTTTTACTTAATGAACACTTAATA--AACT---ATTACATAGTGATTTTACTATTCCACCATGTCGGACGTTTTAAGATTGAACAATGAAAGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATTTCCAATTG------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAAGCCAAAGGCCAAATATGAGGTATGCAGACCGCCATATATATGA-TATGCGTTGTCGTTCCGCCTGCTTACCT--TATTGTTTACCTTATTCTTATATGCATGCCTATTTTAAA-CAAACTTACACATAAATATGATATCACTTTGTTGTACGACCAATACT-------------CTTCTACA------TATACCCCACCTCTGAATATGTAGAGTAGTCAAGTATTTTCAGTGATGCG--ACACGTGTCTACTGTCAAGAAGTCTAATAGCCTACCGCTAAATTGCCTA-GCTAATCTGAAGAACGATGACTAGGCCTGCTCGCCAAAATGACAA-TTTCAAAGCAAAAGGGCAAAACAAAAACTTAAACTTGCCTGA
gi|1 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacatTGTACCGATCACATTTTGCCATTTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACTTATTAAATGTTTATATGTTATATGTTAACATACAAGTACATATAAGGATTGGATTTGGGATTAAAACAACGACAGAGGCCGATTTAGAAGGCGAGGTAAAGCTCTAAATGTCAAAAttccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctctgtaccgatcacattttgccatttttcgttttaccatgttttttttatcttcggagaatttagacttattaaatgtttatatgttatatgttaacatacaagtacatataaggattggatttgggattaaaacaacgacagaggccgatttagaaggcgaggtaaagctctaaatgtcaaaa
gi|10 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacattctgcggtcgttccctttgggtttcttaaatgatacatttttacttaatgaacacttaataaactattacatagtgattttactattccaccatgtcggacgttttaagattgaacaatgaaaggtatttatctacaatacttcgtcacaatgtgttcattcaatttccaattgttttgatttgcactatgtaacgtctttaaaagtctcaaccatgcgcatttaaggtcatctaagccaaaggccaaatatgaggtatgcagaccgccatatatatgatatgcgttgtcgttccgcctgcttaccttattgtttaccttattcttatatgcatgcctattttaaacaaacttacacataaatatgatatcactttgttgtacgaccaatactcttctacatataccccacctctgaatatgtagagtagtcaagtattttcagtgatgcgacacgtgtctactgtcaagaagtctaatagcctaccgctaaattgcctagctaatctgaagaacgatgactaggcctgctcgccaaaatgacaatttcaaagcaaaagggcaaaacaaaaacttaaacttgcctgattccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctcGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCATTCTTCCATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAATTATGCACATTTTTAAGGCAATCTTGGCCAAAAGCCCAGTATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTATA-------------ACC-TATTGTTATGTGCATGTATATTTTAAA-CAAACTTACAAATAAATATGATAC
gi|11 : gGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGGCTCAAGCATGCACA--TTTAAGTTCATCTAAGCCAAAAGTCCAATATGAGGTACGCAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGCCTGTTTACCTTATATTGTTTACCTTATTGTTATGTGCATGCATATTTAAAT-CAAACTTACACATAAATCTGATACC
gi|12 : TGTATCGATAACATTTTGGCATATTTTGTTTTACCATGTTTT--TTATCTTCGGAGAATTTAGACCTATTAAACGTGTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGCTTT
gi|13 : CGGTCGCTCCCTTTGGGTATCTTATT--TGTTAAATTTTTACTTAATGAACTCT-------AACT---ATTAC
gi|14 : ctgtcttaatatccccaatgtaagaagcataacctcttaaatcttttagtaaatattcaacaattaggaaatccATACT----GCTAACTTAAAGTCCAAAGAGATTGTACTATTCCGCTGTGTTTGGCATTTTTACAGTGAACAA----AGGTATTTATGTGCATGCATATTTtaa
gi|15 : ataaatatatTCTGCGGTCTTTTCTTTTTA-CATTTCATTAATGCTAATTTTTTACTAAATGAACAC-----A--AACT---ATTAC-TAGta
gi|16 : TTTGGGTATCTTATT--TGTTAATTTTTTACTTTATG-ACACT-------AACT---ATTAC
gi|2 : ATTACATCGTGTCGGGCGTTTTAACAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTACACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAAGTCATCT-GGCCAAAAGCCCAATACGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTACCT--TATTGTTTACTTTACTGATATGTGCATGTATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGCTTTACGACCAATTTTCT-CCAA------CNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAAATCACCTA-GC---------GGATGATAATT--CCCTGCTCGCCATAATGACCA-TTTTAAAGCAAAAGGATTATTC-AAAACTTTAACTTGACTGtaag
gi|3 : TTTACTATTCCACCGTGTTGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTGCA---ATACTTCGTCTTTAAAAATGCA---ATTCAATCTCAAATTA------TTTTGATTTGCACTATGTAACGTCT-----A-----AACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATAAGTTATACAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTATCT--TATTGTTTATTTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGTTTTACGACCAATATTCT-CCAACCTATGCTTCTACA------TATGCCCGCCCTCTGAATATGTAGAGTATTCAGTAATTTGCAGTGATGCGATACATGTGTCTTTTGTCTAGAAGTCTTATAG-CTA-CGTTAAATTGCCTA-GC---------GGATGATAATT--CCCAGCTCGCCAAAATGACCATTTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatacaaaataaaaa
gi|4 : TTTTTACTTAATGAACACTAAATG--AACT---ATTACATAGTGATTTT-CTATTCCATCGTGTCGGGCGTTTTGAGAGTGAACAA----ATGTATTTATCTATA---ATACTTTGTC----ATAATGTGTTCATTCAATTTCCAATTA------TTTTGATTTGCACTATATAATGTCT----------CAACTATGCGAA--TTTAAGGTAATCTAAGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCATTGTCGGTCCAACTGTTCACCT--TATTGTTTACCTTATTGTTATGTGCATGCATAGTTTGAA-CAAACTTACACATCAATATGATACCACTTTGTTTTAAGACCATTATTCT-CCAA------CTTCTACATAATTTTATGCTCCACCTCTGAATATGTACAGTAGTC--------------------TAC---TGTCT-------AGAAGTCTACTAGCCAACTGCTAAATCGCCTACAT-GATCTGAAGACCGATGACT--
gi|5 : GATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ACACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACATCTTTAAAAGTCTCAACCATGCGCA--TTTAATGTCATCTAAGCCAAAAGCCCAATATGAG------------TCAAATGTAGGA-TATGCGTTGTTGGTCCGCCTGTTTAGCT--TATTGTT-ACATTTTTGTAATGTGCATGCATATTTTAAAACAAACTTACACATAAATATGATACCACTTTATTGTAATACCAATATTCTACCAA--------------------TAT--CCAACCTCGGAATATATAGAGTAGTCAGAAATGTTCAGTTTTGCGATACATGTGCCTACTGTCAAG-AGTCTACTAGTCTACTGCTATATCGCCGA-GCGGATCTGAAGAACGATGCCT--
gi|6 : GTAAACATACAAGTAAGTATAAGCCTTCAATTCGGAATTAAAACAACGATATAGGCCGATTTGGAAGGCGAGGTAGAGTTCTATATGTTAAAAa
gi|7 : atatttaatatactattaaccctaCATGTCGAACGTTTTAAGTGTGAACGA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTTATTCAATCTCTAATTACTAGAATTTTGTTTTGCACTATGTAACGTCTTTAAAAGTCTCAATCATGCGCA--TTTAAAGTTATTTAGGCTAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCTTGTTTAGCT--TATTGTTTACCTAATTGTTATGTGCATTCATATTTCAAA-CAAACTTACACATAAATATGATACCACTTGGTTTTACGACCAATATTCT-CCAA------CTTCTACtcggctcacgtctgaacagaagaaaactattttcaaagaaaccgtaacccgatgtttatgagatatcgtcttcaagtttaagcttcaaaaacaggtcgaactattgatttagacttaaaaaacaattttgctaatgaataatcacatatttcttaccttttacgtgtttttacgtcaacttactctgaaccggaagttgaacgtatggtacaggcgtctgtaccataagtgcgtttagcaggcatgttt
gi|8 : TTTATTATTCCACCGTGGCGGGCGTTTTAAGAGTGAACAA----AGGTATATATCTACA---ATACTTCGTC----ACACTGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTTACGTCTTTAAAAGTCTCAAACATGCGCA--TTTAAAGTCATCTAAGCCAAAAGCCCAATATGAGGTATACAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGC--------------TTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACGTACACATACATAGGATAC
gi|9 : TTTACTATTCCACCGTGTCGGGCGTTTTTAGAGTTAACAA----AGGTATTTATCTACA---ATACCTCGTC----ACAATGTGTCCATTTAACCTCGAATTA------TTTTGATTTGCACTATATAACATCTTTAAAAGTCTCAAC------------------CATCTGGACCAAAGGCGCAA-ATGATGTATGCAGGTCGCCATCTGTAGGACCAGGCGTTGTCGGTCTGCCT-T-------------TTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAGATATAATACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCGTCTGTACCATAAGTGCGTTTTACAGGCGTGATAAAG
Alignments
lowQualScore : 11 4444444 111 111111 111111 222222 1111 333333333 11 1 1 11
lowQualScore : 2 33 1 1 0 9999999 111 3 8888 777 9999 111111 0 55 4 0 77777 4 6 999999 333333 5 1 0000 333 55 7 66 88 3 2 1 5 8 222222222 11 3 3 1 1 1 88 1 1
lowQualScore : . .. . . . ....... ... . .... ... .... ...... . .. . . ..... . . ...... ...... . . .... ... .. . .. .. . . . . . ......... .. . . . . . .. . .
lowQualScore : 5 88 2 0 8 5555555 777 2 5555 000 4444 555555 8 55 0 9 88888 0 7 222222 000000 4 0 0000 000 22 6 44 44 0 8 0 4 0 222222222 00 3 3 0 0 0 55 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----G--AACT---ATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA-GC-GATCTGAAGAACGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
Reference ( family-1339 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----G--AACT---ATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA-GC-GATCTGAAGAACGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
gi|1 : TCTGCGGTCGTTCCCTTTGGGTTTCTTAAA--TGATACATTTTTACTTAATGAACACTTAATA--AACT---ATTACATAGTGATTTTACTATTCCACCATGTCGGACGTTTTAAGATTGAACAATGAAAGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATTTCCAATTG------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAAGCCAAAGGCCAAATATGAGGTATGCAGACCGCCATATATATGA-TATGCGTTGTCGTTCCGCCTGCTTACCT--TATTGTTTACCTTATTCTTATATGCATGCCTATTTTAAA-CAAACTTACACATAAATATGATATCACTTTGTTGTACGACCAATACT-------------CTTCTACA------TATACCCCACCTCTGAATATGTAGAGTAGTCAAGTATTTTCAGTGATGCG--ACACGTGTCTACTGTCAAGAAGTCTAATAGCCTACCGCTAAATTGCCTA-GCTAATCTGAAGAACGATGACTAGGCCTGCTCGCCAAAATGACAA-TTTCAAAGCAAAAGGGCAAAACAAAAACTTAAACTTGCCTGA
gi|1 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacatTGTACCGATCACATTTTGCCATTTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACTTATTAAATGTTTATATGTTATATGTTAACATACAAGTACATATAAGGATTGGATTTGGGATTAAAACAACGACAGAGGCCGATTTAGAAGGCGAGGTAAAGCTCTAAATGTCAAAAttccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctctgtaccgatcacattttgccatttttcgttttaccatgttttttttatcttcggagaatttagacttattaaatgtttatatgttatatgttaacatacaagtacatataaggattggatttgggattaaaacaacgacagaggccgatttagaaggcgaggtaaagctctaaatgtcaaaa
gi|10 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacattctgcggtcgttccctttgggtttcttaaatgatacatttttacttaatgaacacttaataaactattacatagtgattttactattccaccatgtcggacgttttaagattgaacaatgaaaggtatttatctacaatacttcgtcacaatgtgttcattcaatttccaattgttttgatttgcactatgtaacgtctttaaaagtctcaaccatgcgcatttaaggtcatctaagccaaaggccaaatatgaggtatgcagaccgccatatatatgatatgcgttgtcgttccgcctgcttaccttattgtttaccttattcttatatgcatgcctattttaaacaaacttacacataaatatgatatcactttgttgtacgaccaatactcttctacatataccccacctctgaatatgtagagtagtcaagtattttcagtgatgcgacacgtgtctactgtcaagaagtctaatagcctaccgctaaattgcctagctaatctgaagaacgatgactaggcctgctcgccaaaatgacaatttcaaagcaaaagggcaaaacaaaaacttaaacttgcctgattccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctcGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCATTCTTCCATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAATTATGCACATTTTTAAGGCAATCTTGGCCAAAAGCCCAGTATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTATA-------------ACC-TATTGTTATGTGCATGTATATTTTAAA-CAAACTTACAAATAAATATGATAC
gi|11 : gGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGGCTCAAGCATGCACA--TTTAAGTTCATCTAAGCCAAAAGTCCAATATGAGGTACGCAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGCCTGTTTACCTTATATTGTTTACCTTATTGTTATGTGCATGCATATTTAAAT-CAAACTTACACATAAATCTGATACC
gi|12 : TGTATCGATAACATTTTGGCATATTTTGTTTTACCATGTTTT--TTATCTTCGGAGAATTTAGACCTATTAAACGTGTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGCTTT
gi|13 : CGGTCGCTCCCTTTGGGTATCTTATT--TGTTAAATTTTTACTTAATGAACTCT-------AACT---ATTAC
gi|14 : ctgtcttaatatccccaatgtaagaagcataacctcttaaatcttttagtaaatattcaacaattaggaaatccATACT----GCTAACTTAAAGTCCAAAGAGATTGTACTATTCCGCTGTGTTTGGCATTTTTACAGTGAACAA----AGGTATTTATGTGCATGCATATTTtaa
gi|15 : ataaatatatTCTGCGGTCTTTTCTTTTTA-CATTTCATTAATGCTAATTTTTTACTAAATGAACAC-----A--AACT---ATTAC-TAGta
gi|16 : TTTGGGTATCTTATT--TGTTAATTTTTTACTTTATG-ACACT-------AACT---ATTAC
gi|2 : ATTACATCGTGTCGGGCGTTTTAACAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTACACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAAGTCATCT-GGCCAAAAGCCCAATACGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTACCT--TATTGTTTACTTTACTGATATGTGCATGTATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGCTTTACGACCAATTTTCT-CCAA------CNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAAATCACCTA-GC---------GGATGATAATT--CCCTGCTCGCCATAATGACCA-TTTTAAAGCAAAAGGATTATTC-AAAACTTTAACTTGACTGtaag
gi|3 : TTTACTATTCCACCGTGTTGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTGCA---ATACTTCGTCTTTAAAAATGCA---ATTCAATCTCAAATTA------TTTTGATTTGCACTATGTAACGTCT-----A-----AACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATAAGTTATACAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTATCT--TATTGTTTATTTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGTTTTACGACCAATATTCT-CCAACCTATGCTTCTACA------TATGCCCGCCCTCTGAATATGTAGAGTATTCAGTAATTTGCAGTGATGCGATACATGTGTCTTTTGTCTAGAAGTCTTATAG-CTA-CGTTAAATTGCCTA-GC---------GGATGATAATT--CCCAGCTCGCCAAAATGACCATTTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatacaaaataaaaa
gi|4 : TTTTTACTTAATGAACACTAAATG--AACT---ATTACATAGTGATTTT-CTATTCCATCGTGTCGGGCGTTTTGAGAGTGAACAA----ATGTATTTATCTATA---ATACTTTGTC----ATAATGTGTTCATTCAATTTCCAATTA------TTTTGATTTGCACTATATAATGTCT----------CAACTATGCGAA--TTTAAGGTAATCTAAGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCATTGTCGGTCCAACTGTTCACCT--TATTGTTTACCTTATTGTTATGTGCATGCATAGTTTGAA-CAAACTTACACATCAATATGATACCACTTTGTTTTAAGACCATTATTCT-CCAA------CTTCTACATAATTTTATGCTCCACCTCTGAATATGTACAGTAGTC--------------------TAC---TGTCT-------AGAAGTCTACTAGCCAACTGCTAAATCGCCTACAT-GATCTGAAGACCGATGACT--
gi|5 : GATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ACACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACATCTTTAAAAGTCTCAACCATGCGCA--TTTAATGTCATCTAAGCCAAAAGCCCAATATGAG------------TCAAATGTAGGA-TATGCGTTGTTGGTCCGCCTGTTTAGCT--TATTGTT-ACATTTTTGTAATGTGCATGCATATTTTAAAACAAACTTACACATAAATATGATACCACTTTATTGTAATACCAATATTCTACCAA--------------------TAT--CCAACCTCGGAATATATAGAGTAGTCAGAAATGTTCAGTTTTGCGATACATGTGCCTACTGTCAAG-AGTCTACTAGTCTACTGCTATATCGCCGA-GCGGATCTGAAGAACGATGCCT--
gi|6 : GTAAACATACAAGTAAGTATAAGCCTTCAATTCGGAATTAAAACAACGATATAGGCCGATTTGGAAGGCGAGGTAGAGTTCTATATGTTAAAAa
gi|7 : atatttaatatactattaaccctaCATGTCGAACGTTTTAAGTGTGAACGA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTTATTCAATCTCTAATTACTAGAATTTTGTTTTGCACTATGTAACGTCTTTAAAAGTCTCAATCATGCGCA--TTTAAAGTTATTTAGGCTAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCTTGTTTAGCT--TATTGTTTACCTAATTGTTATGTGCATTCATATTTCAAA-CAAACTTACACATAAATATGATACCACTTGGTTTTACGACCAATATTCT-CCAA------CTTCTACtcggctcacgtctgaacagaagaaaactattttcaaagaaaccgtaacccgatgtttatgagatatcgtcttcaagtttaagcttcaaaaacaggtcgaactattgatttagacttaaaaaacaattttgctaatgaataatcacatatttcttaccttttacgtgtttttacgtcaacttactctgaaccggaagttgaacgtatggtacaggcgtctgtaccataagtgcgtttagcaggcatgttt
gi|8 : TTTATTATTCCACCGTGGCGGGCGTTTTAAGAGTGAACAA----AGGTATATATCTACA---ATACTTCGTC----ACACTGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTTACGTCTTTAAAAGTCTCAAACATGCGCA--TTTAAAGTCATCTAAGCCAAAAGCCCAATATGAGGTATACAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGC--------------TTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACGTACACATACATAGGATAC
gi|9 : TTTACTATTCCACCGTGTCGGGCGTTTTTAGAGTTAACAA----AGGTATTTATCTACA---ATACCTCGTC----ACAATGTGTCCATTTAACCTCGAATTA------TTTTGATTTGCACTATATAACATCTTTAAAAGTCTCAAC------------------CATCTGGACCAAAGGCGCAA-ATGATGTATGCAGGTCGCCATCTGTAGGACCAGGCGTTGTCGGTCTGCCT-T-------------TTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAGATATAATACC
blockSeqs : G AA T A AAATG TAA A . TGC TTTA CTAGAA TT C CCTTA A A CCTATG TAATTT N N NNNN NNN NN N NN NN N N N N C GGATCTGAA . T . A G A . G T
blockSeqs : G . C T GCT . A . . . . . . CCT . . . . G G AGTA TTG GA A AT TT T A A C . GATCTGAA . . .
blockSeqs : . . T T A . . . . . . . . TCT . . . . G C AGAA GTT TT A AT AC A A C T . . .
blockSeqs : . . . . . . . . CCT . . . . . A . . . . . . . . C . . . .
blockSeqs : . . . . . . . . GCT . . .
blockSeqs : . . . . . . GCT .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : A****** **** ********* **
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----G--AACT---ATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA-GC-GATCTGAAGAACGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACTA------AACT---ATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA-GC---------GAACGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCGTCTGTACCATAAGTGCGTTTTACAGGCGTGATAAAG
Alignments
lowQualScore : 11 222222 1111 111111 111111 222222 1111 77777777777777777 111 11 1 1 11
lowQualScore : 2 33 1 1 0 888888 7777 3 8888 777 9999 111111 0 55 4 0 77777 4 6 999999 333333 5 1 0000 333 55 7 66 88 3 2 1 5 55555555555555555 444 11 3 3 1 1 1 88 1 1
lowQualScore : . .. . . . ...... .... . .... ... .... ...... . .. . . ..... . . ...... ...... . . .... ... .. . .. .. . . . . ................. ... .. . . . . . .. . .
lowQualScore : 5 88 2 0 8 444444 0000 2 5555 000 4444 555555 8 55 0 9 88888 0 7 222222 000000 4 0 0000 000 22 6 44 44 0 8 0 4 22222222222222222 000 00 3 3 0 0 0 55 0 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----AAA----CTATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA---G---C--ATCTGAAGAA---CGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
Reference ( family-1339 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCGGTCGTTCCCTTTGGGTATCTTATT--TGTTAANTTTTTACTTAATGAACACT----AAA----CTATTACATAGTGATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTTTACCT--TATTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATGATACCACTTTGTTTTACGACCAATATTCT-CCAA------CTTCTACA------TATGCCCNACCTCTGAATATGTAGAGTAGTCAGNAATTTTCAGTGATGCGATACACGTGTCTACTGTCAAGAAGTCTANTAGCCTACCGCTAAATCGCCTA---G---C---------GAA---CGATGACT--CCCTGCTCGCCAAAATGACCA-TTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTTGACTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTACCGATNACATTTTGNCATNTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACCTATTAAACGTNTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGATTTGGAAGGCGAGGTAGAGCTCTANATGTCAAAA
gi|1 : TCTGCGGTCGTTCCCTTTGGGTTTCTTAAA--TGATACATTTTTACTTAATGAACACTTAATAAA----CTATTACATAGTGATTTTACTATTCCACCATGTCGGACGTTTTAAGATTGAACAATGAAAGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATTTCCAATTG------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAGGTCATCTAAGCCAAAGGCCAAATATGAGGTATGCAGACCGCCATATATATGA-TATGCGTTGTCGTTCCGCCTGCTTACCT--TATTGTTTACCTTATTCTTATATGCATGCCTATTTTAAA-CAAACTTACACATAAATATGATATCACTTTGTTGTACGACCAATACT-------------CTTCTACA------TATACCCCACCTCTGAATATGTAGAGTAGTCAAGTATTTTCAGTGATGCG--ACACGTGTCTACTGTCAAGAAGTCTAATAGCCTACCGCTAAATTGCCTA---G---CTAATCTGAAGAA---CGATGACTAGGCCTGCTCGCCAAAATGACAA-TTTCAAAGCAAAAGGGCAAAACAAAAACTTAAACTTGCCTGA
gi|1 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacatTGTACCGATCACATTTTGCCATTTTTCGTTTTACCATGTTTTTTTTATCTTCGGAGAATTTAGACTTATTAAATGTTTATATGTTATATGTTAACATACAAGTACATATAAGGATTGGATTTGGGATTAAAACAACGACAGAGGCCGATTTAGAAGGCGAGGTAAAGCTCTAAATGTCAAAAttccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctctgtaccgatcacattttgccatttttcgttttaccatgttttttttatcttcggagaatttagacttattaaatgtttatatgttatatgttaacatacaagtacatataaggattggatttgggattaaaacaacgacagaggccgatttagaaggcgaggtaaagctctaaatgtcaaaa
gi|10 : gctgttttaacaaacaagtgtgagacaattttgaagcgatttcattggatgtcaaatgaggttaaacattctgcggtcgttccctttgggtttcttaaatgatacatttttacttaatgaacacttaataaactattacatagtgattttactattccaccatgtcggacgttttaagattgaacaatgaaaggtatttatctacaatacttcgtcacaatgtgttcattcaatttccaattgttttgatttgcactatgtaacgtctttaaaagtctcaaccatgcgcatttaaggtcatctaagccaaaggccaaatatgaggtatgcagaccgccatatatatgatatgcgttgtcgttccgcctgcttaccttattgtttaccttattcttatatgcatgcctattttaaacaaacttacacataaatatgatatcactttgttgtacgaccaatactcttctacatataccccacctctgaatatgtagagtagtcaagtattttcagtgatgcgacacgtgtctactgtcaagaagtctaatagcctaccgctaaattgcctagctaatctgaagaacgatgactaggcctgctcgccaaaatgacaatttcaaagcaaaagggcaaaacaaaaacttaaacttgcctgattccggcattttcattgggggttaatagacctgattcaggagatatcaagctctgggatagaataatacacaataaagagaagacgtgtccacagttttattgcacacaactggacataattatttcgttcttattttcatagaacgtgttctgtaccactttcccgccctcGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCATTCTTCCATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGTCTCAATTATGCACATTTTTAAGGCAATCTTGGCCAAAAGCCCAGTATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCCTGTATA-------------ACC-TATTGTTATGTGCATGTATATTTTAAA-CAAACTTACAAATAAATATGATAC
gi|11 : gGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACGTCTTTAAAAGGCTCAAGCATGCACA--TTTAAGTTCATCTAAGCCAAAAGTCCAATATGAGGTACGCAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGCCTGTTTACCTTATATTGTTTACCTTATTGTTATGTGCATGCATATTTAAAT-CAAACTTACACATAAATCTGATACC
gi|12 : TGTATCGATAACATTTTGGCATATTTTGTTTTACCATGTTTT--TTATCTTCGGAGAATTTAGACCTATTAAACGTGTATATGTTACATGTAAACATACAAGTAAATATAAGGATTGAATTCGGGATTAAAACAACGATAGAGGCCGCTTT
gi|13 : CGGTCGCTCCCTTTGGGTATCTTATT--TGTTAAATTTTTACTTAATGAACTCT-----AA----CTATTAC
gi|14 : ctgtcttaatatccccaatgtaagaagcataacctcttaaatcttttagtaaatattcaacaattaggaaatccCAAAGAGATTGTACTATTCCGCTGTGTTTGGCATTTTTACAGTGAACAA----AGGTATTTATGTGCATGCATATTTtaa
gi|15 : ataaatatatatactgctaacttaaagtcTCTGCGGTCTTTTCTTTTTA-CATTTCATTAATGCTAATTTTTTACTAAATGAACAC-----AAA----CTATTAC-TAGta
gi|16 : TTTGGGTATCTTATT--TGTTAATTTTTTACTTTATG-ACACT-----AA----CTATTAC
gi|2 : ATTACATCGTGTCGGGCGTTTTAACAGTGAACAA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTACACTATGTAACGTCTTTAAAAGTCTCAACCATGCGCA--TTTAAAGTCATCT-GGCCAAAAGCCCAATACGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTACCT--TATTGTTTACTTTACTGATATGTGCATGTATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGCTTTACGACCAATTTTCT-CCAA------CNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAAATCACCTA---G---C---------GGA---TGATAATT--CCCTGCTCGCCATAATGACCA-TTTTAAAGCAAAAGGATTATTC-AAAACTTTAACTTGACTGtaag
gi|3 : TTTACTATTCCACCGTGTTGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTGCA---ATACTTCGTCTTTAAAAATGCA---ATTCAATCTCAAATTA------TTTTGATTTGCACTATGTAACGTCT-----A-----AACCATGCGCA--TTTAAGGTCATCTAGGCCAAAAGCCCAATATAAGTTATACAGACCGCCATATGTAGGA-TATGCGTCGTCGGTCCGCCTGTTTATCT--TATTGTTTATTTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAAATATAATAGCACTTTGTTTTACGACCAATATTCT-CCAACCTATGCTTCTACA------TATGCCCGCCCTCTGAATATGTAGAGTATTCAGTAATTTGCAGTGATGCGATACATGTGTCTTTTGTCTAGAAGTCTTATAG-CTA-CGTTAAATTGCCTA---G---C---------GGA---TGATAATT--CCCAGCTCGCCAAAATGACCATTTTTAAAGCAAAAGGATTAATC-AAAACTTAAACTAGACTGAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgatacaaaataaaaa
gi|4 : TTTTTACTTAATGAACACT----AAATGAACTATTACATAGTGATTTT-CTATTCCATCGTGTCGGGCGTTTTGAGAGTGAACAA----ATGTATTTATCTATA---ATACTTTGTC----ATAATGTGTTCATTCAATTTCCAATTA------TTTTGATTTGCACTATATAATGTCT----------CAACTATGCGAA--TTTAAGGTAATCTAAGCCAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCATTGTCGGTCCAACTGTTCACCT--TATTGTTTACCTTATTGTTATGTGCATGCATAGTTTGAA-CAAACTTACACATCAATATGATACCACTTTGTTTTAAGACCATTATTCT-CCAA------CTTCTACATAATTTTATGCTCCACCTCTGAATATGTACAGTAGTC--------------------TAC---TGTCT-------AGAAGTCTACTAGCCAACTGCTAAATCGCCTACATGATCT---------GAAGACCGATGACT--
gi|5 : GATTTTACTATTCCACCGTGTCGGGCGTTTTAAGAGTGAACAA----AGGTATTTATCTACA---ACACTTCGTC----ACAATGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTAACATCTTTAAAAGTCTCAACCATGCGCA--TTTAATGTCATCTAAGCCAAAAGCCCAATATGAG------------TCAAATGTAGGA-TATGCGTTGTTGGTCCGCCTGTTTAGCT--TATTGTT-ACATTTTTGTAATGTGCATGCATATTTTAAAACAAACTTACACATAAATATGATACCACTTTATTGTAATACCAATATTCTACCAA--------------------TAT--CCAACCTCGGAATATATAGAGTAGTCAGAAATGTTCAGTTTTGCGATACATGTGCCTACTGTCAAG-AGTCTACTAGTCTACTGCTATATCGCCGA---G---CGGATCTGAAGAA---CGATGCCT--
gi|6 : GTAAACATACAAGTAAGTATAAGCCTTCAATTCGGAATTAAAACAACGATATAGGCCGATTTGGAAGGCGAGGTAGAGTTCTATATGTTAAAAa
gi|7 : atatttaatatactattaaccctaCATGTCGAACGTTTTAAGTGTGAACGA----AGGTATTTATCTACA---ATACTTCGTC----ACAATGTGTTTATTCAATCTCTAATTACTAGAATTTTGTTTTGCACTATGTAACGTCTTTAAAAGTCTCAATCATGCGCA--TTTAAAGTTATTTAGGCTAAAAGCCCAATATGAGGTATGCAGACCGCCATATGTAGGA-TATGCGTTGTCGGTCCGCTTGTTTAGCT--TATTGTTTACCTAATTGTTATGTGCATTCATATTTCAAA-CAAACTTACACATAAATATGATACCACTTGGTTTTACGACCAATATTCT-CCAA------CTTCTACtcggctcacgtctgaacagaagaaaactattttcaaagaaaccgtaacccgatgtttatgagatatcgtcttcaagtttaagcttcaaaaacaggtcgaactattgatttagacttaaaaaacaattttgctaatgaataatcacatatttcttaccttttacgtgtttttacgtcaacttactctgaaccggaagttgaacgtatggtacaggcgtctgtaccataagtgcgtttagcaggcatgttt
gi|8 : TTTATTATTCCACCGTGGCGGGCGTTTTAAGAGTGAACAA----AGGTATATATCTACA---ATACTTCGTC----ACACTGTGTTCATTCAATCTCCAATTA------TTTTGATTTGCACTATGTTACGTCTTTAAAAGTCTCAAACATGCGCA--TTTAAAGTCATCTAAGCCAAAAGCCCAATATGAGGTATACAGACCGCCATATGTAGGA-TATGCGTTGTCTGTCCGC--------------TTGTTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACGTACACATACATAGGATAC
gi|9 : TTTACTATTCCACCGTGTCGGGCGTTTTTAGAGTTAACAA----AGGTATTTATCTACA---ATACCTCGTC----ACAATGTGTCCATTTAACCTCGAATTA------TTTTGATTTGCACTATATAACATCTTTAAAAGTCTCAAC------------------CATCTGGACCAAAGGCGCAA-ATGATGTATGCAGGTCGCCATCTGTAGGACCAGGCGTTGTCGGTCTGCCT-T-------------TTTACCTTATTGTTATGTGCATGCATATTTTAAA-CAAACTTACACATAGATATAATACC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GCGTCTGTACCATAAGTGCGTTTTACAGGCGTGATAAAG