lowQualScore : 11111111111111111111111111111 11111111111111111111
lowQualScore : 1 1 222 444444444444 1 11 3333333 11 88888888888888888888888888888 11 1 2222 66666666666666666666666666 1 44 1 4 11 111 1 11111111111111111111 1 2 444444 2 222 2 55555 44444444 1
lowQualScore : 7 8 99 2 7 5 3 6 333 888888888888 6 2 0 33 0 0 1 6 0 7 4 6666666 99 66666666666666666666666666666 2 2 66 1 6 8888 7 1 66666666666666666666666666 5 6 7 66 5 0 00 222 2 7 99999999999999999999 4 6 5 8 4 6 999999 2 2 0 111 0 55 00000 3 4 88888888 0
lowQualScore : . . .. . . . . . ... ............ . . . .. . . . . . . . ....... .. ............................. . . .. . . .... . . .......................... . . . .. . . .. ... . . .................... . . . . . . ...... . . . ... . .. ..... . . ........ .
lowQualScore : 3 3 33 5 0 0 7 7 333 777777777777 5 5 0 33 7 7 0 7 7 3 0 7777777 33 55555555555555555555555555555 5 5 55 0 3 3333 3 0 00000000000000000000000000 3 0 3 00 0 0 00 555 5 0 55555555555555555555 0 0 5 5 0 0 000000 5 5 0 000 0 00 00000 0 0 55555555 5
consensus : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGNAACCTTTTACA---TGTTTACGTTACTCAAACT--A-TCTA-TATGTNTTGTTCGCACC-TTTGGCAAAACACAATAGATTTTTTAACCACGTGACCGACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCATATATTACGTCAATGCTGTGTCTGCAGCCGAAGGTCNANCACTNAGGCCTAATATATACGGTATC----GTTCGGCCTACTC-GACTGA--ATGTGTTAA-CT--ACAG-TTTATGAATTTAAAATGGCGCCAATCCGCCATT-ATTTTCGAAANGNTTAATAAACANTCTTCTCTGAAATTAACATATGAACAGCTGAGTCACTTNACGAAATCAGCGACTTAAATTGCAANTGCATGTATNCATAAATGTNTCTGANGAAACTACTCAGTATGGNNTATTAGAGANTNTACTTCATATACAGAANTTCAATGGTTTCAC
Reference ( gi|1 ) : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTTGATCACCCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAATTCGAGTTTATTATGTGTTGTTCGCACC-TTTAGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTT-AGCGGCA-----------------------GCA--AGAAAGTCCAGTACCCAGGTCTAATATATATGGAATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATAAATTTAAAAC-GCGCCAATCAGCCATTCATTTTTTAAACAATTAATAAACACTCTACTCTGAAAT--------GA--AG------CACTTTACGAAATCAGTGACCTAAAATGCAATTACATGTGTT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATACTGAATTTCAATGATTTCAC
gi|4 : AACTTTTGGCACAGACTACATCTAAT-CTATGTTCTACCAAAGTTTCGAAGGATCTATCAATATCTATGAAGATCGTCTCGTTACTTGTTGAACAACCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAACTGTAGTTTAATAAGTGTTGTTCGCACC-TT-GGCAAAACACAATAGATTGTTTAACCACGTGACAAATGTTGCCTATATATACCACTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTACTCTC--TCTC-AGCGGC
gi|7 : ttgcatcaatacagaagtaatAACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTT
gi|3 : acacgtaactacactgctcatgtcgtgataacgtttcttaaggaactgtattttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAACTATTGGTACAGAACACATATTTTTCTATATTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATTGTCTCGTTACCT
gi|2 : agcccatcatatttagagcatagttacgtaattaagtgattatactaaataatgtaataaaataatatgtttcacgtgttaacaccgggccttgttcgcccagtatgcggcgcacttctgtttatcaatccaggggccatgcgtttgaatccttcattcggtcacaatctcaatggtgattgatatgcggacaatgcgtcttgttgccattcacttctcacatctgattcaaacagctaatctaccaggaccacatgattgaatgggtaggttaaatgattgtctgttagcccttgatgacacaaatttcacacgaaacttttaaaaagcaaaacacgttactacaatgctcatgccgggattacgtttcttaaggaactgtatttttaatttagtttaactcgattgcgaagaaagctcaaatttatactaaccgctatcgagtccgcttgctgtgtacaaccattactgagagttgttttcagagtcatcgggttgagctggtggtcgaacccgcaacctctggcgtgagcggccaacacatctattgttctactgccccgatttttgcatcagtacagaagtaatTCTATCAAAATCTATGAAATTCGTCTCGTTACTTTTTGAACAACCCCTGATATCTTTTACC---TGTATACGTTACTCAA-------------ATGTATTGTTCGCACCTTTTGGCAAAACACAATAGAATTTTTAACCACGTGACCAATGTTGCCTATATATACCCATGTCGTTGCATTTCGCGCTGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTTGTGTCATCGGTGGTGTCATCAGCAGTTTCCATGGTGGGGCGTCTGGTAGATGCTTTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTAAGTAATAAAACAG-------------TTTCTATGAAATATTGATTCATTA----CGGTCTCGAGTGACATATATTACGTCAATGCTGTGTCTGCAGCAAAAGGTTCAGCACTAAGGCCTACAATAGATGGCATC----G-TGGGGCTAC-------------------------ACAGGTTTATGAA-TAAAAATGGCGCCAATCCGCCATT-ATTTTCAAAAAGTTTAATAAACAATCTTCTCTGAAAT--------GAACAGCTGAGTCACTTAACGAAATCAGTGACTT-AATTGCAAATACATGTATT--TAAATGTGTCTGACGAAACTAC---ATATGGACTATTAGAGAATATATTTT--------AACTTCAATGGTTTTACtt
gi|13 : gaatgaTATAAAGGTCATTCCATTACTTTTTTAACAACCCTCATATC--TTTACACCGTGTTCAGGTTACTCAAATTTAATTCTATTCTGTTTTATTCGCACC-a
gi|6 : tTGTCTCGTT---ACC-TTTGGCAAGACACAATATATTTTTTAACCACGTGACCGACGTTGCCTATATATTTCCCTGTCGTTGCATTTCGCACCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAAAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTATGGTGTCATCGATGGTATCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTCCGGTACCTGCAGTCCAGCTCCTGAAGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGAA-----------------------GCA--CGAAAGTCAACTACTTAGGCCTAATATATATGGTATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCTACACAGTTTTATGAATTTAGA
gi|14 : AGGTATAATATATACAGTATCACCAGTTCGACCTA-TCAAACTGACTATGTGTTAA-TT--ACAA-CATATGGGTTTAAA
gi|5 : acgccagtcaatttcatTAAACGATTAATAAACACTCTTCTCTGAAATTAACATATGA--AG------CACTTTACGAAATCAGCGACTTAAA-TGCAATTGCATGTATGCAT--ATGTCTCTGAAGAAA-TACTCAGTA-GGCATAT-----ACTTTACTTCATATACAGAAGTTCAATGATTTCAC
9 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CAAGATATTTTAACAATTTCTACAATACGAAAACTTGTTGTTAAAACATAATTTGTTAATAAAATGTTTATTCTTGTAACCGTGGCTTGGTTAAATTAATTATACTTAGTTTATACTTATTTGTTTTTAGCTCGACTGCGATGAAAGCTCGAAGCTTATATGAACCGCTCTCGAGTTCGCTTCCTGGGTACAACCAATACTAAGTGTTGTTTTATGAGAGGCATCGGGTCGACCGGGGGATCGAACCCGCAACTTCTGGCATCAGCTGCCAACGCTCTATC
Unaligned ( gi|9 ): GTTTTTTTTAAGAGGCATCAGTTGAGCTGGGAATCAAATCTGGAACCTCTTGACATAAGCAGCCAACACTCTATCCACTACACTACTGCCCCGCTACATTGCAAAGGAACCTCAACATTTTTGAGAACTTAAATTTGTTTCAAGAGCAGAGAAGAGAAACTAAACTTGTAACTATTGGTAAC
Unaligned ( gi|10 ): ACAAATCAATATCTTTTACTGAACTTCTCCCTAGACTGTTTCCTGGGTAAAACCAGTACCGAGTATTGTTTTTCGAGTGGCATCGGTTCAAGCTGAGGATCGAACCTGCAACTTCGGGCACGAGCAGCAAATACTCTTGATTTCTGTGATAATATTAAAGATAACAATATAATAAAATT
Unaligned ( gi|11 ): TCGAACTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATGTAATTAGAGATTGTAGGTTTCACGTGCTTCGAATGCAGGGAAGACGATAGTGTTC
Unaligned ( gi|12 ): GAGTTTAATAATTGGTTAATTAGTACACATTTTTTAGCTCAATTGCAAAGAAAGCTCAGATATTATATAAATCGCTCTCGAGTCCGTTTCCTAGGTACAATCAGTTCTGAGTGTTGTATTAA
Unaligned ( gi|15 ): AGAGCTCTCGAGTCGAGTTCGCGCGTACAGCCATACCAAGTTTTGTTTTTGGGAGGTCATAGGGTCAAACCTG
Unaligned ( gi|16 ): TATATTTAATGTGTCGCTCTAAAATCTGTTTCTTGGGTAGAATTAGTTCTGGGTGTTATTAGAG
Unaligned ( gi|17 ): AAGTAACACGACGTAATTACACTGCTCATGCAGAGATTACAATACTAAACTAACTGTATTTT
Unaligned ( gi|18 ): CTGTTCATGAATGACTATGATAACACACGTTTGTGTAT
Alignments
lowQualScore : 1111111111111111111111111111111 1111111111111111111111
lowQualScore : 111 99999999999999999999 11 2222222 1 6666666666666666666666666666666 2222 3333333333333333333333333 222 1 2 1 0000000000000000000000 1 444444 2 2 55555
lowQualScore : 3 4 1 1 33 2 777 66666666666666666666 1 33 2 2 3 3 4 5555555 0 5555555555555555555555555555555 0 1 33 22 2 1 1111 3 7777777777777777777777777 444 3 5 2 0 0 1 1 1 1111111111111111111111 1 0 7 6 1 0 999999 1 1 3 7 3 22 11111 1 1 9999999 1 0
lowQualScore : . . . . .. . ... .................... . .. . . . . . ....... . ............................... . . .. .. . . .... . ......................... ... . . . . . . . . ...................... . . . . . . ...... . . . . . .. ..... . . ....... . .
lowQualScore : 2 0 4 0 00 5 555 00000000000000000000 0 22 0 0 0 2 2 0000000 0 2222222222222222222222222222222 7 0 00 22 0 2 2222 2 5555555555555555555555555 000 2 0 5 0 5 0 0 0 0000000000000000000000 0 7 3 0 0 7 777777 0 0 3 3 7 00 00000 0 0 3333333 0 7
consensus : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAA-TT---G--T---TTA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-----------AA----------GCAG--GAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACA-GTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAA-------ATGA--AG-TGAG-CACTTTACGAAATCAGCGACTTAAA-TGCAATTACATGTATTC-T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
Reference ( family-1297 ) : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGNAACCTTTTACA---TGTTTACGTTACTCAAA-CT---A--T---CTA-T-ATGTNTTGTTCGCACCTTT-GGCAAAACACAATAGATTTTTTAACCACGTGACCGACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCATATATTACGTCAATGCTGTGTCTGCAGCCGAAGGTCNANCACTNAGGCCTAATATATACGGTATC----GTTCGGCCTACT-CGACTGA--ATGTGTTAA-CT--ACA-G-TTTATGAATTTAAAATGGCGCCAATCCGCCATT-ATTTTCGAAANGNTTAATAAACANTCTTCTCTGAAATTAACATATGAACAGCTGAGTCACTTNACGAAATCAGCGACTTAAATTGCAANTGCATGTATNCATAAATGTNTCTGANGAAACTACTCAGTATGGNNTATTAGAGANTNTACTTCATATACAGAANTTCAATGGTTTCAC
gi|1 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTTGATCACCCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAA-TTCGAG--T---TTA-TTATGTGTTGTTCGCACCTTT-AGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTT-AGCGGCA-----------------------GCAA--GAAAGTCCAGTACCCAGGTCTAATATATATGGAATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCT--ACA-GTTTTATAAATTTAAAAC-GCGCCAATCAGCCATTCATTTTTTAAACAATTAATAAACACTCTACTCTGAAA----------------TGAAGCACTTTACGAAATCAGTGACCTAAAATGCAATTACATGTGTTT----ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATACTGAATTTCAATGATTTCAC
gi|13 : TATAAAGGTCATTCCATTACTTTTTTAACAACCCTCATATC--TTTACACCGTGTTCAGGTTACTCAAATTT---AATT---CTATT-CTGTTTTATTCGCACC
gi|14 : tGTCAATTTCATAGGTATAATATATACAGTATCACCAGTTCGACCTATC-AAACTGACTATGTGTTAA-TT--ACA-A-CATATGGGTTTAAA
gi|2 : acgccaGAATGATCTATCAAAATCTATGAAATTCGTCTCGTTACTTTTTGAACAACCCCTGATATCTTTTACC---TGTATACGTTACTCAAA--------------------TGTATTGTTCGCACCTTTTGGCAAAACACAATAGAATTTTTAACCACGTGACCAATGTTGCCTATATATACCCATGTCGTTGCATTTCGCGCTGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTTGTGTCATCGGTGGTGTCATCAGCAGTTTCCATGGTGGGGCGTCTGGTAGATGCTTTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTAAGTAATAAAACAG-------------TTTCTATGAAATATTGATTCATTA----CGGTCTCGAGTGACATATATTACGTCAATGCTGTGTCTGCAGCAAAAGGTTCAGCACTAAGGCCTACAATAGATGGCATC----G-TGGGGCTAC-------------------------ACAGG-TTTATGAA-TAAAAATGGCGCCAATCCGCCATT-ATTTTCAAAAAGTTTAATAAACAATCTTCTCTGAA--------ATGAACAGCTGAGTCACTTAACGAAATCAGTGACTT-AATTGCAAATACATGTATT--TAAATGTGTCTGACGAAACTAC---ATATGGACTATTAGAGAATATATTTT--------AACTTCAATGGTTTTAC
gi|3 : AACTATTGGTACAGAACACATATTTTTCTATATTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATTGTCTCGTTACCTTTa
gi|4 : agcccatcatatttagagcatagttacgtaattaagtgattatactaaataatgtaataaaataatatgtttcacgtgttaacaccgggccttgttcgcccagtatgcggcgcacttctgtttatcaatccaggggccatgcgtttgaatccttcattcggtcacaatctcaatggtgattgatatgcggacaatgcgtcttgttgccattcacttctcacatctgattcaaacagctaatctaccaggaccacatgattgaatgggtaggttaaatgattgtctgttagcccttgatgacacaaatttcacacgaaacttttaaaaagcaaaacacgttactacaatgctcatgccgggattacgtttcttaaggaactgtatttttaatttagtttaactcgattgcgaagaaagctcaaatttatactaaccgctatcgagtccgcttgctgtgtacaaccattactgagagttgttttcagagtcatcgggttgagctggtggtcgaacccgcaacctctggcgtgagcggccaacacatctattgttctactgccccgatttttgcatcagtacagaagtaatAACTTTTGGCACAGACTACATCTAAT-CTATGTTCTACCAAAGTTTCGAAGGATCTATCAATATCTATGAAGATCGTCTCGTTACTTGTTGAACAACCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAA-CT---G--TAGTTTAAT-AAGTGTTGTTCGCACCTT--GGCAAAACACAATAGATTGTTTAACCACGTGACAAATGTTGCCTATATATACCACTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTACTCTC--TCTC-AGCGGC
gi|5 : ttgcatcaatacagaagtaatAAACGATTAATAAACACTCTTCTCTGAAATTAACATATGA--AG------CACTTTACGAAATCAGCGACTTAAA-TGCAATTGCATGTATGCAT--ATGTCTCTGAAGAAA-TACTCAGTA-GGCATAT-----ACTTTACTTCATATACAGAAGTTCAATGATTTCAC
gi|6 : tTGTCTCGTT---ACCTTT-GGCAAGACACAATATATTTTTTAACCACGTGACCGACGTTGCCTATATATTTCCCTGTCGTTGCATTTCGCACCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAAAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTATGGTGTCATCGATGGTATCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTCCGGTACCTGCAGTCCAGCTCCTGAAGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGG-------------AA----------GCA--CGAAAGTCAACTACTTAGGCCTAATATATATGGTATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCTACACA-GTTTTATGAATTTAGAaactttcgaactggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcaattaaagattgtagatttcacgtgcttcgtatacagggaatgtgatgcatgttctttttttagatatcttttattgtcacactcgatccatttacagttatggaaacatgaggttatgtataatacagtagttaacatgacttcagtaaaattaaagaaaatagaaaatgctcatatttttaatttcacacatgcacgcactcacaccatcacagacg
gi|7 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAGATATTTTAACAATTTCTACAATACGAAAACTTGTTGTTAAAACATAATTTGTTAATAAAATGTTTATTCTTGTAACCGTGGCTTGGTTAAATTAATTATACTTAGTTTATACTTATTTGTTTTTAGCTCGACTGCGATGAAAGCTCGAAGCTTATATGAACCGCTCTCGAGTTCGCTTCCTGGGTACAACCAATACTAAGTGTTGTTTTATGAGAGGCATCGGGTCGACCGGGGGATCGAACCCGCAACTTCTGGCATCAGCTGCCAACGCTCTATC
Unaligned ( gi|9 ): GTTTTTTTTAAGAGGCATCAGTTGAGCTGGGAATCAAATCTGGAACCTCTTGACATAAGCAGCCAACACTCTATCCACTACACTACTGCCCCGCTACATTGCAAAGGAACCTCAACATTTTTGAGAACTTAAATTTGTTTCAAGAGCAGAGAAGAGAAACTAAACTTGTAACTATTGGTAAC
Unaligned ( gi|10 ): ACAAATCAATATCTTTTACTGAACTTCTCCCTAGACTGTTTCCTGGGTAAAACCAGTACCGAGTATTGTTTTTCGAGTGGCATCGGTTCAAGCTGAGGATCGAACCTGCAACTTCGGGCACGAGCAGCAAATACTCTTGATTTCTGTGATAATATTAAAGATAACAATATAATAAAATT
Unaligned ( gi|11 ): TCGAACTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATGTAATTAGAGATTGTAGGTTTCACGTGCTTCGAATGCAGGGAAGACGATAGTGTTC
Unaligned ( gi|12 ): GAGTTTAATAATTGGTTAATTAGTACACATTTTTTAGCTCAATTGCAAAGAAAGCTCAGATATTATATAAATCGCTCTCGAGTCCGTTTCCTAGGTACAATCAGTTCTGAGTGTTGTATTAA
Unaligned ( gi|15 ): AGAGCTCTCGAGTCGAGTTCGCGCGTACAGCCATACCAAGTTTTGTTTTTGGGAGGTCATAGGGTCAAACCTG
Unaligned ( gi|16 ): TATATTTAATGTGTCGCTCTAAAATCTGTTTCTTGGGTAGAATTAGTTCTGGGTGTTATTAGAG
Unaligned ( gi|17 ): AAGTAACACGACGTAATTACACTGCTCATGCAGAGATTACAATACTAAACTAACTGTATTTT
Unaligned ( gi|18 ): CTGTTCATGAATGACTATGATAACACACGTTTGTGTAT
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 111 888888888888888888 11 2222222 1 2222222222222222222222222 11 2222 11 11111 1 1 2 7777777777 1 1 44444 1 1 33333 2222222
lowQualScore : 3 1 1 1 22 2 777 111111111111111111 1 33 1 3 0 5555555 0 9999999999999999999999999 3 33 1 1 22 2 1 1111 3 55 22 0 33 99999 9 3 5 1 5 1 3 6666666666 3 0 3 66666 3 7 3 33333 8888888 1
lowQualScore : . . . . .. . ... .................. . .. . . . ....... . ......................... . .. . . .. . . .... . .. .. . .. ..... . . . . . . . .......... . . . ..... . . . ..... ....... .
lowQualScore : 2 0 4 0 22 5 555 222222222222222222 0 22 0 2 8 0000000 0 5555555555555555555555555 7 88 0 0 55 0 2 2222 2 88 88 8 88 88888 2 2 0 0 0 0 7 7777777777 3 7 3 00000 3 3 3 33333 3333333 0
consensus : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATTCG-GT---T-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGC------------AA----------GCANGAAA--GTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTG-AAATGA---G-TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
Reference ( family-1297 ) : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT---GT---T-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-----------AA----------GCAGGAAA--GTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAAATGA--AG-TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATTC-T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
gi|1 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTTGATCACCCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAATTCGAGT---T-TA-TTATGTGTTGTTCGCACCTTT-AGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTT-AGCGGC-------------A----------GCAAGAAA--GTCCAGTACCCAGGTCTAATATATATGGAATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATAAATTTAAAAC-GCGCCAATCAGCCATTCATTTTTTAAACAATTAATAAACACTCTACTCTG-AAATGA----------AG-CACTTTACGAAATCAGTGACCTAAAATGCAATTACATGTGTT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATACTGAATTTCAATGATTTCAC
gi|13 : TATAAAGGTCATTCCATTACTTTTTTAACAACCCTCATATC--TTTACACCGTGTTCAGGTTACTCAAATTTA-AT---TCTATT-CTGTTTTATTCGCACC
gi|14 : tA--GTCAATTTCATAGGTATAATATATACAGTATCACCAGTTCGACCTA-TCAAACTGACTATGTGTTAA-TT--ACAA-CATATGGGTTTAAA
gi|2 : acgccGAATGATCTATCAAAATCTATGAAATTCGTCTCGTTACTTTTTGAACAACCCCTGATATCTTTTACC---TGTATACGTTACTCAAAT------------------GTATTGTTCGCACCTTTTGGCAAAACACAATAGAATTTTTAACCACGTGACCAATGTTGCCTATATATACCCATGTCGTTGCATTTCGCGCTGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTTGTGTCATCGGTGGTGTCATCAGCAGTTTCCATGGTGGGGCGTCTGGTAGATGCTTTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTAAGTAATAAAACAG-------------TTTCTATGAAATATTGATTCATTA----CGGTCTCGAGTGACATATATTACGTCAATGCTGTGTCTGCAGCAAAAGGTTCAGCACTAAGGCCTACAATAGATGGCATC----G-TGGGGCTAC-------------------------ACAGGTTTATGAA-TAAAAATGGCGCCAATCCGCCATT-ATTTTCAAAAAGTTTAATAAACAATCTTCTCTG-AAATGAACAGCTG---AGTCACTTAACGAAATCAGTGACTT-AATTGCAAATACATGTATT--TAAATGTGTCTGACGAAACTAC---ATATGGACTATTAGAGAATATATTTT--------AACTTCAATGGTTTTAC
gi|3 : AACTATTGGTACAGAACACATATTTTTCTATATTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATTGTCTCGTTACCTTTa
gi|4 : agcccatcatatttagagcatagttacgtaattaagtgattatactaaataatgtaataaaataatatgtttcacgtgttaacaccgggccttgttcgcccagtatgcggcgcacttctgtttatcaatccaggggccatgcgtttgaatccttcattcggtcacaatctcaatggtgattgatatgcggacaatgcgtcttgttgccattcacttctcacatctgattcaaacagctaatctaccaggaccacatgattgaatgggtaggttaaatgattgtctgttagcccttgatgacacaaatttcacacgaaacttttaaaaagcaaaacacgttactacaatgctcatgccgggattacgtttcttaaggaactgtatttttaatttagtttaactcgattgcgaagaaagctcaaatttatactaaccgctatcgagtccgcttgctgtgtacaaccattactgagagttgttttcagagtcatcgggttgagctggtggtcgaacccgcaacctctggcgtgagcggccaacacatctattgttctactgccccgatttttgcatcagtacagaagtaatAACTTTTGGCACAGACTACATCTAAT-CTATGTTCTACCAAAGTTTCGAAGGATCTATCAATATCTATGAAGATCGTCTCGTTACTTGTTGAACAACCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAACT---GTAGTT-TAAT-AAGTGTTGTTCGCACCTT--GGCAAAACACAATAGATTGTTTAACCACGTGACAAATGTTGCCTATATATACCACTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTACTCTC--TCTC-AGCGGC
gi|5 : ttgcatcaatacagaagtaatAAACGATTAATAAACACTCTTCTCTGAAATTAA--CA-TATGAAG-CACTTTACGAAATCAGCGACTT-AAATGCAATTGCATGTATGCAT--ATGTCTCTGAAGAAA-TACTCAGTA-GGCATAT-----ACTTTACTTCATATACAGAAGTTCAATGATTTCAC
gi|6 : tTGTCTCGTT---ACCTTT-GGCAAGACACAATATATTTTTTAACCACGTGACCGACGTTGCCTATATATTTCCCTGTCGTTGCATTTCGCACCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAAAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTATGGTGTCATCGATGGTATCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTCCGGTACCTGCAGTCCAGCTCCTGAAGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGG-------------AA----------GCACGAAA--GTCAACTACTTAGGCCTAATATATATGGTATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCTACACAGTTTTATGAATTTAGAaactttcgaactggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcaattaaagattgtagatttcacgtgcttcgtatacagggaatgtgatgcatgttctttttttagatatcttttattgtcacactcgatccatttacagttatggaaacatgaggttatgtataatacagtagttaacatgacttcagtaaaattaaagaaaatagaaaatgctcatatttttaatttcacacatgcacgcactcacaccatcacagacg
gi|7 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAGATATTTTAACAATTTCTACAATACGAAAACTTGTTGTTAAAACATAATTTGTTAATAAAATGTTTATTCTTGTAACCGTGGCTTGGTTAAATTAATTATACTTAGTTTATACTTATTTGTTTTTAGCTCGACTGCGATGAAAGCTCGAAGCTTATATGAACCGCTCTCGAGTTCGCTTCCTGGGTACAACCAATACTAAGTGTTGTTTTATGAGAGGCATCGGGTCGACCGGGGGATCGAACCCGCAACTTCTGGCATCAGCTGCCAACGCTCTATC
Unaligned ( gi|9 ): GTTTTTTTTAAGAGGCATCAGTTGAGCTGGGAATCAAATCTGGAACCTCTTGACATAAGCAGCCAACACTCTATCCACTACACTACTGCCCCGCTACATTGCAAAGGAACCTCAACATTTTTGAGAACTTAAATTTGTTTCAAGAGCAGAGAAGAGAAACTAAACTTGTAACTATTGGTAAC
Unaligned ( gi|10 ): ACAAATCAATATCTTTTACTGAACTTCTCCCTAGACTGTTTCCTGGGTAAAACCAGTACCGAGTATTGTTTTTCGAGTGGCATCGGTTCAAGCTGAGGATCGAACCTGCAACTTCGGGCACGAGCAGCAAATACTCTTGATTTCTGTGATAATATTAAAGATAACAATATAATAAAATT
Unaligned ( gi|11 ): TCGAACTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATGTAATTAGAGATTGTAGGTTTCACGTGCTTCGAATGCAGGGAAGACGATAGTGTTC
Unaligned ( gi|12 ): GAGTTTAATAATTGGTTAATTAGTACACATTTTTTAGCTCAATTGCAAAGAAAGCTCAGATATTATATAAATCGCTCTCGAGTCCGTTTCCTAGGTACAATCAGTTCTGAGTGTTGTATTAA
Unaligned ( gi|15 ): AGAGCTCTCGAGTCGAGTTCGCGCGTACAGCCATACCAAGTTTTGTTTTTGGGAGGTCATAGGGTCAAACCTG
Unaligned ( gi|16 ): TATATTTAATGTGTCGCTCTAAAATCTGTTTCTTGGGTAGAATTAGTTCTGGGTGTTATTAGAG
Unaligned ( gi|17 ): AAGTAACACGACGTAATTACACTGCTCATGCAGAGATTACAATACTAAACTAACTGTATTTT
Unaligned ( gi|18 ): CTGTTCATGAATGACTATGATAACACACGTTTGTGTAT
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 6666666666666666 11 2222222 1 444444444444444444444444444 2222 11 11111 1 1 77777777777 1 22222 1 1 33333 2222222
lowQualScore : 3 1 1 1 22 2 777 1111111111111111 1 33 1 3 0 5555555 0 333333333333333333333333333 77 1 1 22 2 1 1111 3 55 22 0 33 99999 9 3 5 1 5 1 99999999999 0 3 77777 3 7 3 33333 8888888 1
lowQualScore : . . . . .. . ... ................ . .. . . . ....... . ........................... .. . . .. . . .... . .. .. . .. ..... . . . . . . ........... . . ..... . . . ..... ....... .
lowQualScore : 2 0 4 0 22 5 555 0000000000000000 0 22 0 2 8 0000000 0 222222222222222222222222222 77 0 0 55 0 2 2222 2 88 88 8 88 88888 2 2 0 0 0 0 00000000000 7 3 77777 3 3 3 33333 3333333 0
consensus : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-TA-GTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TGA-G-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
Reference ( family-1297 ) : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-CG-GTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCANGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAG----TGA-G-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
gi|1 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTTGATCACCCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAATT-CGAGTT-TA-TTATGTGTTGTTCGCACCTTT-AGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTT-AGCGGC--------------------------AGCAAGAAAGTCCAGTACCCAGGTCTAATATATATGGAATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATAAATTTAAAAC-GCGCCAATCAGCCATTCATTTTTTAAACAATTAATAAACACTCTACTCTGAAATGA-------A-G-CACTTTACGAAATCAGTGACCTAAAATGCAATTACATGTGTT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATACTGAATTTCAATGATTTCAC
gi|13 : TATAAAGGTCATTCCATTACTTTTTTAACAACCCTCATATC--TTTACACCGTGTTCAGGTTACTCAAATT-TA-ATTCTATT-CTGTTTTATTCGCACC
gi|14 : tAGTCAATTTCATAGGTATAATATATACAGTATCACCAGTTCGACCTA-TCAAACTGACTATGTGTTAA-TT--ACAA-CATATGGGTTTAAA
gi|2 : acgccGAATGATCTATCAAAATCTATGAAATTCGTCTCGTTACTTTTTGAACAACCCCTGATATCTTTTACC---TGTATACGTTACTCAAAT----------------GTATTGTTCGCACCTTTTGGCAAAACACAATAGAATTTTTAACCACGTGACCAATGTTGCCTATATATACCCATGTCGTTGCATTTCGCGCTGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTTGTGTCATCGGTGGTGTCATCAGCAGTTTCCATGGTGGGGCGTCTGGTAGATGCTTTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTAAGTAATAAAACAG-------------TTTCTATGAAATATTGATTCATTA----CGGTCTCGAGTGACATATATTACGTCAATGCTGTGTCTGCAGCAA-AAGGTTCAGCACTAAGGCCTACAATAGATGGCATC----G-TGGGGCTAC-------------------------ACAGGTTTATGAA-TAAAAATGGCGCCAATCCGCCATT-ATTTTCAAAAAGTTTAATAAACAATCTTCTCTGAAATGAACAGCTGA-GTCACTTAACGAAATCAGTGACTT-AATTGCAAATACATGTATT--TAAATGTGTCTGACGAAACTAC---ATATGGACTATTAGAGAATATATTTT--------AACTTCAATGGTTTTAC
gi|3 : AACTATTGGTACAGAACACATATTTTTCTATATTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATTGTCTCGTTACCTTTa
gi|4 : agcccatcatatttagagcatagttacgtaattaagtgattatactaaataatgtaataaaataatatgtttcacgtgttaacaccgggccttgttcgcccagtatgcggcgcacttctgtttatcaatccaggggccatgcgtttgaatccttcattcggtcacaatctcaatggtgattgatatgcggacaatgcgtcttgttgccattcacttctcacatctgattcaaacagctaatctaccaggaccacatgattgaatgggtaggttaaatgattgtctgttagcccttgatgacacaaatttcacacgaaacttttaaaaagcaaaacacgttactacaatgctcatgccgggattacgtttcttaaggaactgtatttttaatttagtttaactcgattgcgaagaaagctcaaatttatactaaccgctatcgagtccgcttgctgtgtacaaccattactgagagttgttttcagagtcatcgggttgagctggtggtcgaacccgcaacctctggcgtgagcggccaacacatctattgttctactgccccgatttttgcatcagtacagaagtaatAACTTTTGGCACAGACTACATCTAAT-CTATGTTCTACCAAAGTTTCGAAGGATCTATCAATATCTATGAAGATCGTCTCGTTACTTGTTGAACAACCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAACTGTA-GTT-TAAT-AAGTGTTGTTCGCACCTT--GGCAAAACACAATAGATTGTTTAACCACGTGACAAATGTTGCCTATATATACCACTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTACTCTC--TCTC-AGCGGC
gi|5 : ttgcatcaatacagaagtaatAAACGATTAATAAACACTCTTCTCTGAAATTAACATATGAAG-CACTTTACGAAATCAGCGACTT-AAATGCAATTGCATGTATGCAT--ATGTCTCTGAAGAAA-TACTCAGTA-GGCATAT-----ACTTTACTTCATATACAGAAGTTCAATGATTTCAC
gi|6 : tTGTCTCGTT---ACCTTT-GGCAAGACACAATATATTTTTTAACCACGTGACCGACGTTGCCTATATATTTCCCTGTCGTTGCATTTCGCACCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAAAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTATGGTGTCATCGATGGTATCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTCCGGTACCTGCAGTCCAGCTCCTGAAGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGG-A-------------------------AGCACGAAAGTCAACTACTTAGGCCTAATATATATGGTATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCTACACAGTTTTATGAATTTAGAaactttcgaactggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcaattaaagattgtagatttcacgtgcttcgtatacagggaatgtgatgcatgttctttttttagatatcttttattgtcacactcgatccatttacagttatggaaacatgaggttatgtataatacagtagttaacatgacttcagtaaaattaaagaaaatagaaaatgctcatatttttaatttcacacatgcacgcactcacaccatcacagacg
gi|7 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAGATATTTTAACAATTTCTACAATACGAAAACTTGTTGTTAAAACATAATTTGTTAATAAAATGTTTATTCTTGTAACCGTGGCTTGGTTAAATTAATTATACTTAGTTTATACTTATTTGTTTTTAGCTCGACTGCGATGAAAGCTCGAAGCTTATATGAACCGCTCTCGAGTTCGCTTCCTGGGTACAACCAATACTAAGTGTTGTTTTATGAGAGGCATCGGGTCGACCGGGGGATCGAACCCGCAACTTCTGGCATCAGCTGCCAACGCTCTATC
Unaligned ( gi|9 ): GTTTTTTTTAAGAGGCATCAGTTGAGCTGGGAATCAAATCTGGAACCTCTTGACATAAGCAGCCAACACTCTATCCACTACACTACTGCCCCGCTACATTGCAAAGGAACCTCAACATTTTTGAGAACTTAAATTTGTTTCAAGAGCAGAGAAGAGAAACTAAACTTGTAACTATTGGTAAC
Unaligned ( gi|10 ): ACAAATCAATATCTTTTACTGAACTTCTCCCTAGACTGTTTCCTGGGTAAAACCAGTACCGAGTATTGTTTTTCGAGTGGCATCGGTTCAAGCTGAGGATCGAACCTGCAACTTCGGGCACGAGCAGCAAATACTCTTGATTTCTGTGATAATATTAAAGATAACAATATAATAAAATT
Unaligned ( gi|11 ): TCGAACTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATGTAATTAGAGATTGTAGGTTTCACGTGCTTCGAATGCAGGGAAGACGATAGTGTTC
Unaligned ( gi|12 ): GAGTTTAATAATTGGTTAATTAGTACACATTTTTTAGCTCAATTGCAAAGAAAGCTCAGATATTATATAAATCGCTCTCGAGTCCGTTTCCTAGGTACAATCAGTTCTGAGTGTTGTATTAA
Unaligned ( gi|15 ): AGAGCTCTCGAGTCGAGTTCGCGCGTACAGCCATACCAAGTTTTGTTTTTGGGAGGTCATAGGGTCAAACCTG
Unaligned ( gi|16 ): TATATTTAATGTGTCGCTCTAAAATCTGTTTCTTGGGTAGAATTAGTTCTGGGTGTTATTAGAG
Unaligned ( gi|17 ): AAGTAACACGACGTAATTACACTGCTCATGCAGAGATTACAATACTAAACTAACTGTATTTT
Unaligned ( gi|18 ): CTGTTCATGAATGACTATGATAACACACGTTTGTGTAT
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 5555555555555555 11 2222222 1 444444444444444444444444444 2222 11 11111 1 1 4444444444 1 1 22222 1 1 33333 2222222
lowQualScore : 3 1 1 1 22 2 777 0000000000000000 1 33 1 3 0 5555555 0 333333333333333333333333333 6 1 1 22 2 1 1111 3 55 22 0 33 99999 9 3 5 1 5 1 9999999999 3 0 3 77777 3 7 3 33333 8888888 1
lowQualScore : . . . . .. . ... ................ . .. . . . ....... . ........................... . . . .. . . .... . .. .. . .. ..... . . . . . . .......... . . . ..... . . . ..... ....... .
lowQualScore : 2 0 4 0 22 5 555 2222222222222222 0 22 0 2 8 0000000 0 222222222222222222222222222 7 0 0 55 0 2 2222 2 88 88 8 88 88888 2 2 0 0 0 0 0000000000 3 7 3 77777 3 3 3 33333 3333333 0
consensus : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
Reference ( family-1297 ) : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
gi|1 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTTGATCACCCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAATT-CGAGTT-TA-TTATGTGTTGTTCGCACCTTT-AGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTT-AGCGGC--------------------------AGCAAGAAAGTCCAGTACCCAGGTCTAATATATATGGAATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATAAATTTAAAAC-GCGCCAATCAGCCATTCATTTTTTAAACAATTAATAAACACTCTACTCTGAAATGA----------AG-CACTTTACGAAATCAGTGACCTAAAATGCAATTACATGTGTT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATACTGAATTTCAATGATTTCAC
gi|13 : TATAAAGGTCATTCCATTACTTTTTTAACAACCCTCATATC--TTTACACCGTGTTCAGGTTACTCAAATT-T-AATTCTATT-CTGTTTTATTCGCACC
gi|14 : tAGTCAATTTCATAGGTATAATATATACAGTATCACCAGTTCGACCTA-TCAAACTGACTATGTGTTAA-TT--ACAA-CATATGGGTTTAAA
gi|2 : acgccGAATGATCTATCAAAATCTATGAAATTCGTCTCGTTACTTTTTGAACAACCCCTGATATCTTTTACC---TGTATACGTTACTCAAAT----------------GTATTGTTCGCACCTTTTGGCAAAACACAATAGAATTTTTAACCACGTGACCAATGTTGCCTATATATACCCATGTCGTTGCATTTCGCGCTGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTTGTGTCATCGGTGGTGTCATCAGCAGTTTCCATGGTGGGGCGTCTGGTAGATGCTTTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTAAGTAATAAAACAG-------------TTTCTATGAAATATTGATTCATTA----CGGTCTCGAGTGACATATATTACGTCAATGCTGTGTCTGCAGCAA-AAGGTTCAGCACTAAGGCCTACAATAGATGGCATC----G-TGGGGCTAC-------------------------ACAGGTTTATGAA-TAAAAATGGCGCCAATCCGCCATT-ATTTTCAAAAAGTTTAATAAACAATCTTCTCTGAAATGAACAGCTG---AGTCACTTAACGAAATCAGTGACTT-AATTGCAAATACATGTATT--TAAATGTGTCTGACGAAACTAC---ATATGGACTATTAGAGAATATATTTT--------AACTTCAATGGTTTTAC
gi|3 : AACTATTGGTACAGAACACATATTTTTCTATATTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATTGTCTCGTTACCTTTa
gi|4 : agcccatcatatttagagcatagttacgtaattaagtgattatactaaataatgtaataaaataatatgtttcacgtgttaacaccgggccttgttcgcccagtatgcggcgcacttctgtttatcaatccaggggccatgcgtttgaatccttcattcggtcacaatctcaatggtgattgatatgcggacaatgcgtcttgttgccattcacttctcacatctgattcaaacagctaatctaccaggaccacatgattgaatgggtaggttaaatgattgtctgttagcccttgatgacacaaatttcacacgaaacttttaaaaagcaaaacacgttactacaatgctcatgccgggattacgtttcttaaggaactgtatttttaatttagtttaactcgattgcgaagaaagctcaaatttatactaaccgctatcgagtccgcttgctgtgtacaaccattactgagagttgttttcagagtcatcgggttgagctggtggtcgaacccgcaacctctggcgtgagcggccaacacatctattgttctactgccccgatttttgcatcagtacagaagtaatAACTTTTGGCACAGACTACATCTAAT-CTATGTTCTACCAAAGTTTCGAAGGATCTATCAATATCTATGAAGATCGTCTCGTTACTTGTTGAACAACCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAACTGT-AGTT-TAAT-AAGTGTTGTTCGCACCTT--GGCAAAACACAATAGATTGTTTAACCACGTGACAAATGTTGCCTATATATACCACTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTACTCTC--TCTC-AGCGGC
gi|5 : ttgcatcaatacagaagtaatAAACGATTAATAAACACTCTTCTCTGAAATTAACA--TATGAAG-CACTTTACGAAATCAGCGACTT-AAATGCAATTGCATGTATGCAT--ATGTCTCTGAAGAAA-TACTCAGTA-GGCATAT-----ACTTTACTTCATATACAGAAGTTCAATGATTTCAC
gi|6 : tTGTCTCGTT---ACCTTT-GGCAAGACACAATATATTTTTTAACCACGTGACCGACGTTGCCTATATATTTCCCTGTCGTTGCATTTCGCACCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAAAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTATGGTGTCATCGATGGTATCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTCCGGTACCTGCAGTCCAGCTCCTGAAGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGG-A-------------------------AGCACGAAAGTCAACTACTTAGGCCTAATATATATGGTATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCTACACAGTTTTATGAATTTAGAaactttcgaactggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcaattaaagattgtagatttcacgtgcttcgtatacagggaatgtgatgcatgttctttttttagatatcttttattgtcacactcgatccatttacagttatggaaacatgaggttatgtataatacagtagttaacatgacttcagtaaaattaaagaaaatagaaaatgctcatatttttaatttcacacatgcacgcactcacaccatcacagacg
gi|7 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAGATATTTTAACAATTTCTACAATACGAAAACTTGTTGTTAAAACATAATTTGTTAATAAAATGTTTATTCTTGTAACCGTGGCTTGGTTAAATTAATTATACTTAGTTTATACTTATTTGTTTTTAGCTCGACTGCGATGAAAGCTCGAAGCTTATATGAACCGCTCTCGAGTTCGCTTCCTGGGTACAACCAATACTAAGTGTTGTTTTATGAGAGGCATCGGGTCGACCGGGGGATCGAACCCGCAACTTCTGGCATCAGCTGCCAACGCTCTATC
Unaligned ( gi|9 ): GTTTTTTTTAAGAGGCATCAGTTGAGCTGGGAATCAAATCTGGAACCTCTTGACATAAGCAGCCAACACTCTATCCACTACACTACTGCCCCGCTACATTGCAAAGGAACCTCAACATTTTTGAGAACTTAAATTTGTTTCAAGAGCAGAGAAGAGAAACTAAACTTGTAACTATTGGTAAC
Unaligned ( gi|10 ): ACAAATCAATATCTTTTACTGAACTTCTCCCTAGACTGTTTCCTGGGTAAAACCAGTACCGAGTATTGTTTTTCGAGTGGCATCGGTTCAAGCTGAGGATCGAACCTGCAACTTCGGGCACGAGCAGCAAATACTCTTGATTTCTGTGATAATATTAAAGATAACAATATAATAAAATT
Unaligned ( gi|11 ): TCGAACTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATGTAATTAGAGATTGTAGGTTTCACGTGCTTCGAATGCAGGGAAGACGATAGTGTTC
Unaligned ( gi|12 ): GAGTTTAATAATTGGTTAATTAGTACACATTTTTTAGCTCAATTGCAAAGAAAGCTCAGATATTATATAAATCGCTCTCGAGTCCGTTTCCTAGGTACAATCAGTTCTGAGTGTTGTATTAA
Unaligned ( gi|15 ): AGAGCTCTCGAGTCGAGTTCGCGCGTACAGCCATACCAAGTTTTGTTTTTGGGAGGTCATAGGGTCAAACCTG
Unaligned ( gi|16 ): TATATTTAATGTGTCGCTCTAAAATCTGTTTCTTGGGTAGAATTAGTTCTGGGTGTTATTAGAG
Unaligned ( gi|17 ): AAGTAACACGACGTAATTACACTGCTCATGCAGAGATTACAATACTAAACTAACTGTATTTT
Unaligned ( gi|18 ): CTGTTCATGAATGACTATGATAACACACGTTTGTGTAT
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 5555555555555555 11 2222222 1 444444444444444444444444444 2222 11 11111 1 1 4444444444 1 1 22222 1 1 33333 2222222
lowQualScore : 3 1 1 1 22 2 777 0000000000000000 1 33 1 3 0 5555555 0 333333333333333333333333333 6 1 1 22 2 1 1111 3 55 22 0 33 99999 9 3 5 1 5 1 9999999999 3 0 3 77777 3 7 3 33333 8888888 1
lowQualScore : . . . . .. . ... ................ . .. . . . ....... . ........................... . . . .. . . .... . .. .. . .. ..... . . . . . . .......... . . . ..... . . . ..... ....... .
lowQualScore : 2 0 4 0 22 5 555 2222222222222222 0 22 0 2 8 0000000 0 222222222222222222222222222 7 0 0 55 0 2 2222 2 88 88 8 88 88888 2 2 0 0 0 0 0000000000 3 7 3 77777 3 3 3 33333 3333333 0
consensus : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
Reference ( family-1297 ) : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
gi|1 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTTGATCACCCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAATT-CGAGTT-TA-TTATGTGTTGTTCGCACCTTT-AGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTT-AGCGGC--------------------------AGCAAGAAAGTCCAGTACCCAGGTCTAATATATATGGAATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATAAATTTAAAAC-GCGCCAATCAGCCATTCATTTTTTAAACAATTAATAAACACTCTACTCTGAAATGA----------AG-CACTTTACGAAATCAGTGACCTAAAATGCAATTACATGTGTT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATACTGAATTTCAATGATTTCAC
gi|13 : TATAAAGGTCATTCCATTACTTTTTTAACAACCCTCATATC--TTTACACCGTGTTCAGGTTACTCAAATT-T-AATTCTATT-CTGTTTTATTCGCACC
gi|14 : tAGTCAATTTCATAGGTATAATATATACAGTATCACCAGTTCGACCTA-TCAAACTGACTATGTGTTAA-TT--ACAA-CATATGGGTTTAAA
gi|2 : acgccGAATGATCTATCAAAATCTATGAAATTCGTCTCGTTACTTTTTGAACAACCCCTGATATCTTTTACC---TGTATACGTTACTCAAAT----------------GTATTGTTCGCACCTTTTGGCAAAACACAATAGAATTTTTAACCACGTGACCAATGTTGCCTATATATACCCATGTCGTTGCATTTCGCGCTGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTTGTGTCATCGGTGGTGTCATCAGCAGTTTCCATGGTGGGGCGTCTGGTAGATGCTTTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTAAGTAATAAAACAG-------------TTTCTATGAAATATTGATTCATTA----CGGTCTCGAGTGACATATATTACGTCAATGCTGTGTCTGCAGCAA-AAGGTTCAGCACTAAGGCCTACAATAGATGGCATC----G-TGGGGCTAC-------------------------ACAGGTTTATGAA-TAAAAATGGCGCCAATCCGCCATT-ATTTTCAAAAAGTTTAATAAACAATCTTCTCTGAAATGAACAGCTG---AGTCACTTAACGAAATCAGTGACTT-AATTGCAAATACATGTATT--TAAATGTGTCTGACGAAACTAC---ATATGGACTATTAGAGAATATATTTT--------AACTTCAATGGTTTTAC
gi|3 : AACTATTGGTACAGAACACATATTTTTCTATATTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATTGTCTCGTTACCTTTa
gi|4 : agcccatcatatttagagcatagttacgtaattaagtgattatactaaataatgtaataaaataatatgtttcacgtgttaacaccgggccttgttcgcccagtatgcggcgcacttctgtttatcaatccaggggccatgcgtttgaatccttcattcggtcacaatctcaatggtgattgatatgcggacaatgcgtcttgttgccattcacttctcacatctgattcaaacagctaatctaccaggaccacatgattgaatgggtaggttaaatgattgtctgttagcccttgatgacacaaatttcacacgaaacttttaaaaagcaaaacacgttactacaatgctcatgccgggattacgtttcttaaggaactgtatttttaatttagtttaactcgattgcgaagaaagctcaaatttatactaaccgctatcgagtccgcttgctgtgtacaaccattactgagagttgttttcagagtcatcgggttgagctggtggtcgaacccgcaacctctggcgtgagcggccaacacatctattgttctactgccccgatttttgcatcagtacagaagtaatAACTTTTGGCACAGACTACATCTAAT-CTATGTTCTACCAAAGTTTCGAAGGATCTATCAATATCTATGAAGATCGTCTCGTTACTTGTTGAACAACCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAACTGT-AGTT-TAAT-AAGTGTTGTTCGCACCTT--GGCAAAACACAATAGATTGTTTAACCACGTGACAAATGTTGCCTATATATACCACTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTACTCTC--TCTC-AGCGGC
gi|5 : ttgcatcaatacagaagtaatAAACGATTAATAAACACTCTTCTCTGAAATTAACA--TATGAAG-CACTTTACGAAATCAGCGACTT-AAATGCAATTGCATGTATGCAT--ATGTCTCTGAAGAAA-TACTCAGTA-GGCATAT-----ACTTTACTTCATATACAGAAGTTCAATGATTTCAC
gi|6 : tTGTCTCGTT---ACCTTT-GGCAAGACACAATATATTTTTTAACCACGTGACCGACGTTGCCTATATATTTCCCTGTCGTTGCATTTCGCACCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAAAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTATGGTGTCATCGATGGTATCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTCCGGTACCTGCAGTCCAGCTCCTGAAGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGG-A-------------------------AGCACGAAAGTCAACTACTTAGGCCTAATATATATGGTATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCTACACAGTTTTATGAATTTAGAaactttcgaactggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcaattaaagattgtagatttcacgtgcttcgtatacagggaatgtgatgcatgttctttttttagatatcttttattgtcacactcgatccatttacagttatggaaacatgaggttatgtataatacagtagttaacatgacttcagtaaaattaaagaaaatagaaaatgctcatatttttaatttcacacatgcacgcactcacaccatcacagacg
gi|7 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTT
blockSeqs : T A A T AT C CCG TTAATTCTATTCT T TT T T CTCTC G CATATATTACGTCAATGCTGTGTCTGC G A T AT C T ACCA T CT AA CT GCTAC G T G C . A ACATATGA T . TAA C T T TAGAG ATATACA C
blockSeqs : T A A T GA C . TGTAGTTTAATAA A T G T CGG . A . C G TA T C . T T CG . TT T T ACAGCTG . . CAT . . . . . G
blockSeqs : . T A T AG . . . G . T . C . A C TT T T . . C . . . . .
blockSeqs : T G C
blockSeqs : G
blockSeqCons :
originalCons : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
finalCons : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAGATATTTTAACAATTTCTACAATACGAAAACTTGTTGTTAAAACATAATTTGTTAATAAAATGTTTATTCTTGTAACCGTGGCTTGGTTAAATTAATTATACTTAGTTTATACTTATTTGTTTTTAGCTCGACTGCGATGAAAGCTCGAAGCTTATATGAACCGCTCTCGAGTTCGCTTCCTGGGTACAACCAATACTAAGTGTTGTTTTATGAGAGGCATCGGGTCGACCGGGGGATCGAACCCGCAACTTCTGGCATCAGCTGCCAACGCTCTATC
Unaligned ( gi|9 ): GTTTTTTTTAAGAGGCATCAGTTGAGCTGGGAATCAAATCTGGAACCTCTTGACATAAGCAGCCAACACTCTATCCACTACACTACTGCCCCGCTACATTGCAAAGGAACCTCAACATTTTTGAGAACTTAAATTTGTTTCAAGAGCAGAGAAGAGAAACTAAACTTGTAACTATTGGTAAC
Unaligned ( gi|10 ): ACAAATCAATATCTTTTACTGAACTTCTCCCTAGACTGTTTCCTGGGTAAAACCAGTACCGAGTATTGTTTTTCGAGTGGCATCGGTTCAAGCTGAGGATCGAACCTGCAACTTCGGGCACGAGCAGCAAATACTCTTGATTTCTGTGATAATATTAAAGATAACAATATAATAAAATT
Unaligned ( gi|11 ): TCGAACTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATGTAATTAGAGATTGTAGGTTTCACGTGCTTCGAATGCAGGGAAGACGATAGTGTTC
Unaligned ( gi|12 ): GAGTTTAATAATTGGTTAATTAGTACACATTTTTTAGCTCAATTGCAAAGAAAGCTCAGATATTATATAAATCGCTCTCGAGTCCGTTTCCTAGGTACAATCAGTTCTGAGTGTTGTATTAA
Unaligned ( gi|15 ): AGAGCTCTCGAGTCGAGTTCGCGCGTACAGCCATACCAAGTTTTGTTTTTGGGAGGTCATAGGGTCAAACCTG
Unaligned ( gi|16 ): TATATTTAATGTGTCGCTCTAAAATCTGTTTCTTGGGTAGAATTAGTTCTGGGTGTTATTAGAG
Unaligned ( gi|17 ): AAGTAACACGACGTAATTACACTGCTCATGCAGAGATTACAATACTAAACTAACTGTATTTT
Unaligned ( gi|18 ): CTGTTCATGAATGACTATGATAACACACGTTTGTGTAT
Alignments
lowQualScore : 111111111111111111111111111
lowQualScore : 111 5555555555555555 11 2222222 1 444444444444444444444444444 2222 11 11111 1 1 4444444444 1 1 22222 1 1 33333 2222222
lowQualScore : 3 1 1 1 22 2 777 0000000000000000 1 33 1 3 0 5555555 0 333333333333333333333333333 6 1 1 22 2 1 1111 3 55 22 0 33 99999 9 3 5 1 5 1 9999999999 3 0 3 77777 3 7 3 33333 8888888 1
lowQualScore : . . . . .. . ... ................ . .. . . . ....... . ........................... . . . .. . . .... . .. .. . .. ..... . . . . . . .......... . . . ..... . . . ..... ....... .
lowQualScore : 2 0 4 0 22 5 555 2222222222222222 0 22 0 2 8 0000000 0 222222222222222222222222222 7 0 0 55 0 2 2222 2 88 88 8 88 88888 2 2 0 0 0 0 0000000000 3 7 3 77777 3 3 3 33333 3333333 0
consensus : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
Reference ( family-1297 ) : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTNCCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATCGTCTCGTTACTTNTTGAACAACCCCCGGAACCTTTTACA---TGTTTACGTTACTCAAATT-T-AGTT-TA-T-ATGTNTTGTTCGCACCTTT-GGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTGNGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGGCA-------------------------AGCAAGAAAGTCNANTACTTAGGCCTAATATATACGGTATC----GTTCGGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATGAATTTAAAACGGCGCCAATCNGCCATTCATTTTCNAAACGATTAATAAACACTCTTCTCTGAAATGAACA--TG---AG-CACTTTACGAAATCAGCGACTT-AAATGCAATTACATGTATT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATAC-GAANTTCAATGATTTCAC
gi|1 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTTGATCACCCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAATT-CGAGTT-TA-TTATGTGTTGTTCGCACCTTT-AGCAAGACACAATAGATTTTTTAACCACGTGACCAACGTTGCCTATATATACCCCTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTT-AGCGGC--------------------------AGCAAGAAAGTCCAGTACCCAGGTCTAATATATATGGAATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCT--ACAGTTTTATAAATTTAAAAC-GCGCCAATCAGCCATTCATTTTTTAAACAATTAATAAACACTCTACTCTGAAATGA----------AG-CACTTTACGAAATCAGTGACCTAAAATGCAATTACATGTGTT--T--ATGTCTCTGACGAAA-TACTCAGTA-GGCCTAT-----AATTTACTTCATATACTGAATTTCAATGATTTCAC
gi|13 : TATAAAGGTCATTCCATTACTTTTTTAACAACCCTCATATC--TTTACACCGTGTTCAGGTTACTCAAATT-T-AATTCTATT-CTGTTTTATTCGCACC
gi|14 : tAGTCAATTTCATAGGTATAATATATACAGTATCACCAGTTCGACCTA-TCAAACTGACTATGTGTTAA-TT--ACAA-CATATGGGTTTAAA
gi|2 : acgccGAATGATCTATCAAAATCTATGAAATTCGTCTCGTTACTTTTTGAACAACCCCTGATATCTTTTACC---TGTATACGTTACTCAAAT----------------GTATTGTTCGCACCTTTTGGCAAAACACAATAGAATTTTTAACCACGTGACCAATGTTGCCTATATATACCCATGTCGTTGCATTTCGCGCTGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTACGGCGAAGACTGTTGTGTCATCGGTGGTGTCATCAGCAGTTTCCATGGTGGGGCGTCTGGTAGATGCTTTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTAAGTAATAAAACAG-------------TTTCTATGAAATATTGATTCATTA----CGGTCTCGAGTGACATATATTACGTCAATGCTGTGTCTGCAGCAA-AAGGTTCAGCACTAAGGCCTACAATAGATGGCATC----G-TGGGGCTAC-------------------------ACAGGTTTATGAA-TAAAAATGGCGCCAATCCGCCATT-ATTTTCAAAAAGTTTAATAAACAATCTTCTCTGAAATGAACAGCTG---AGTCACTTAACGAAATCAGTGACTT-AATTGCAAATACATGTATT--TAAATGTGTCTGACGAAACTAC---ATATGGACTATTAGAGAATATATTTT--------AACTTCAATGGTTTTAC
gi|3 : AACTATTGGTACAGAACACATATTTTTCTATATTCTACCAAAGTTTCGAAGGATCTATCAAAATCTATGAAGATTGTCTCGTTACCTTTa
gi|4 : agcccatcatatttagagcatagttacgtaattaagtgattatactaaataatgtaataaaataatatgtttcacgtgttaacaccgggccttgttcgcccagtatgcggcgcacttctgtttatcaatccaggggccatgcgtttgaatccttcattcggtcacaatctcaatggtgattgatatgcggacaatgcgtcttgttgccattcacttctcacatctgattcaaacagctaatctaccaggaccacatgattgaatgggtaggttaaatgattgtctgttagcccttgatgacacaaatttcacacgaaacttttaaaaagcaaaacacgttactacaatgctcatgccgggattacgtttcttaaggaactgtatttttaatttagtttaactcgattgcgaagaaagctcaaatttatactaaccgctatcgagtccgcttgctgtgtacaaccattactgagagttgttttcagagtcatcgggttgagctggtggtcgaacccgcaacctctggcgtgagcggccaacacatctattgttctactgccccgatttttgcatcagtacagaagtaatAACTTTTGGCACAGACTACATCTAAT-CTATGTTCTACCAAAGTTTCGAAGGATCTATCAATATCTATGAAGATCGTCTCGTTACTTGTTGAACAACCCCCAGAACCTTTTACA---TGTTTACGTTACTCAAACTGT-AGTT-TAAT-AAGTGTTGTTCGCACCTT--GGCAAAACACAATAGATTGTTTAACCACGTGACAAATGTTGCCTATATATACCACTGTCGTTGCATTTCGCGCCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAGAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGTGAAGACTGGGGTGTCATCGATGGTGTCATCAGCAGTTTCTATGGTGGAGCGTATGGTAGACGCTGTGTTCGGTACCTGCAGTCCAGCTCCTGAGGTGAGTACTAAAACAGTTGTATTCTATCATTTCTATGAAATATTGATCCATTACTCTC--TCTC-AGCGGC
gi|5 : ttgcatcaatacagaagtaatAAACGATTAATAAACACTCTTCTCTGAAATTAACA--TATGAAG-CACTTTACGAAATCAGCGACTT-AAATGCAATTGCATGTATGCAT--ATGTCTCTGAAGAAA-TACTCAGTA-GGCATAT-----ACTTTACTTCATATACAGAAGTTCAATGATTTCAC
gi|6 : tTGTCTCGTT---ACCTTT-GGCAAGACACAATATATTTTTTAACCACGTGACCGACGTTGCCTATATATTTCCCTGTCGTTGCATTTCGCACCGACTTCGTGTTCAAATTCTAATTTTCTCGATTTCAAGTATTTCAAAAAATCAGTCTCATGGCTTCCTTGTTCTCGTGTGTTGTGCGTATGGCGAAGACTATGGTGTCATCGATGGTATCATCAGCAGTTTCTGTGGTGGAGCGTATGGTAGACGCTGTGTCCGGTACCTGCAGTCCAGCTCCTGAAGTGAGTACTAAAACAGTTGTATTCTATTATTTCTATGAAATATTGATCCATTA----C--TCTC-AGCGG-A-------------------------AGCACGAAAGTCAACTACTTAGGCCTAATATATATGGTATC----GTTCAGCCTACTCCGACTAA--ATGTGTTAAGCTACACAGTTTTATGAATTTAGAaactttcgaactggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttgcaattaaagattgtagatttcacgtgcttcgtatacagggaatgtgatgcatgttctttttttagatatcttttattgtcacactcgatccatttacagttatggaaacatgaggttatgtataatacagtagttaacatgacttcagtaaaattaaagaaaatagaaaatgctcatatttttaatttcacacatgcacgcactcacaccatcacagacg
gi|7 : AACTATTGGTACAGAACACATCTTTTTCTATGTTCTTCCAAAGTTTCGAAGATTCTATCAAAATCTATGAAGATCGTCTCGTTACTTGTT
9 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): CAAGATATTTTAACAATTTCTACAATACGAAAACTTGTTGTTAAAACATAATTTGTTAATAAAATGTTTATTCTTGTAACCGTGGCTTGGTTAAATTAATTATACTTAGTTTATACTTATTTGTTTTTAGCTCGACTGCGATGAAAGCTCGAAGCTTATATGAACCGCTCTCGAGTTCGCTTCCTGGGTACAACCAATACTAAGTGTTGTTTTATGAGAGGCATCGGGTCGACCGGGGGATCGAACCCGCAACTTCTGGCATCAGCTGCCAACGCTCTATC
Unaligned ( gi|9 ): GTTTTTTTTAAGAGGCATCAGTTGAGCTGGGAATCAAATCTGGAACCTCTTGACATAAGCAGCCAACACTCTATCCACTACACTACTGCCCCGCTACATTGCAAAGGAACCTCAACATTTTTGAGAACTTAAATTTGTTTCAAGAGCAGAGAAGAGAAACTAAACTTGTAACTATTGGTAAC
Unaligned ( gi|10 ): ACAAATCAATATCTTTTACTGAACTTCTCCCTAGACTGTTTCCTGGGTAAAACCAGTACCGAGTATTGTTTTTCGAGTGGCATCGGTTCAAGCTGAGGATCGAACCTGCAACTTCGGGCACGAGCAGCAAATACTCTTGATTTCTGTGATAATATTAAAGATAACAATATAATAAAATT
Unaligned ( gi|11 ): TCGAACTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACATGTAATTAGAGATTGTAGGTTTCACGTGCTTCGAATGCAGGGAAGACGATAGTGTTC
Unaligned ( gi|12 ): GAGTTTAATAATTGGTTAATTAGTACACATTTTTTAGCTCAATTGCAAAGAAAGCTCAGATATTATATAAATCGCTCTCGAGTCCGTTTCCTAGGTACAATCAGTTCTGAGTGTTGTATTAA
Unaligned ( gi|15 ): AGAGCTCTCGAGTCGAGTTCGCGCGTACAGCCATACCAAGTTTTGTTTTTGGGAGGTCATAGGGTCAAACCTG
Unaligned ( gi|16 ): TATATTTAATGTGTCGCTCTAAAATCTGTTTCTTGGGTAGAATTAGTTCTGGGTGTTATTAGAG
Unaligned ( gi|17 ): AAGTAACACGACGTAATTACACTGCTCATGCAGAGATTACAATACTAAACTAACTGTATTTT
Unaligned ( gi|18 ): CTGTTCATGAATGACTATGATAACACACGTTTGTGTAT