lowQualScore : 11111111111111111111111111 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 11111111111 33333333333 2222222222 1111 222222222 1111111 222222222222222 111 1 1 1 1 11111111111111 333333333333 1 1111111111111111 333333 11 1 2 66666666666666666666666666 11 2222 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 222 4
lowQualScore : 0 3 3 55555555555 0 3 44 55555555555 2222222222 555 4 555 4 44 3 44 555 5555 3 888 222222222 8888888 5 111111111111111 9 666 7 3 1 7 4 3 5 999 1 3 4 99999999999999 666 3 4 7777 444444444444 2 3 3 3 7777777777777777 66 000000 33 99999999 33 99999999 00 333 4 22 5 0 333 5 3 22 4 66666666666666666666666666 4 3 0 00 1 0000 1 33 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 777 6 0
lowQualScore : . . . ........... . . .. ........... .......... ... . ... . .. . .. ... .... . ... ......... ....... . ............... . ... . . . . . . . ... . . . .............. ... . . .... ............ . . . . ................ .. ...... .. ........ .. ........ .. ... . .. . . ... . . .. . .......................... . . . .. . .... . .. ............................................................................................................................................................................... ... . .
lowQualScore : 8 1 1 88888888888 4 3 66 55555555555 5555555555 888 0 444 8 22 1 22 444 1111 6 555 888888888 2222222 7 555555555555555 0 888 6 0 6 1 1 6 0 555 9 6 3 99999999999999 444 6 7 7777 222222222222 3 1 5 4 7777777777777777 11 333333 44 77777777 77 77777777 44 222 1 33 8 9 111 9 8 00 2 55555555555555555555555555 0 8 3 77 7 6666 5 11 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 000 0 0
consensus : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT--------A--AAAA----------AC---ATAACACNC---TTAGT--AT-TTA--TA---TCTCA-N--CGT---ATT----C----AATCGGC----GCCGTAGTC--C-----------AGTGGTAGAGCATT--CGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGACAA-A-TTTTTTGTAGT-ATTT--------T-----TTT---TT-TCTATT----GTT-TA-CTCTTTCCTTTTGAATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------TAC-AC----A-TATATAGGTATAAAT--GT--------AATA--A--------AAA-G---GTTATNGTATGGTAGAG--GTGTGCCTGTTGGTCATATTGG-CC-C-TGGTGTTCC-AC-AT-TGGACC-----G--A--GCCAT---GGGCCAATATGGAACACCAGGGCCAATATGACCA-ACAGGCACACC--TCTACCATACAATAACC--TCT-------A---ATANAT---ATATGCGTG---AC--ATTACT-T---TTTTC-AACGACTTTGAATNTTTTTAAATATTAGGCGTT-TGTAGTTTATACTGCGGTGCGTTAAATTTA--TTTCAA------TGATGCCACATGATTTGGTTTAAAAATC--TAAC----TTT---AATTCCCTTTTGC-TTAT
Reference ( gi|1 ) : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT--------AG-AAAA----------AC---ATAACACGC---TTGGT--AT-TTA--TA---TCTCA-A--CAT---ATT----G----AATCAAT----GCCATAGTT--C-----------AGTTGTAGAGCATT--GGCCCGTAAATCTGTAGGTCTGAGTTGTATTCCCCGAC-AGCACAA-A-TTTTTTGTCGT-ATTT--------T-----TTT---TT-TCTGTT----GTT-TA-CTCTTGCCTTTTGAATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGCCATCAAA----------------TAT-AC----T-TATATAGGTATAAAT--GT--------AATA--A--------AAG-G---GTTATAGTATGGTAGAG--GTGTGCCTGTTGGTCAAATTGGCCC-C-TGGTCTTCC-AC-AT-TGGACCTCAG-GCTAAAGCCAT-TGGGGCCAATATGGAACACCAGAGCCAATATGACCA-ACAGGCACATG--TCTACCATACAATAACC--TCT-------A---ATAAAA---ATATGTCTG---AC--ACTACTCT---TTTTCAAATGACATTGAATGTTTACATGTATT----GTTGTGTA--TTATA----GGTCAGTTA---TTAACTTTCAATAAACTTGATGTGATTTGATTTGATTT---GATCCATAACAGAATTTACAAATTTGTTCTTGCATTATGTCTGAAATTATGAGGACTTTAT
gi|2 : AAAAA---ATGTTGTAAACCCATTTCACTTAT-TTAATGTTATTGTTGATCAAA-----------G----T-AT--CAAT--------A---AAA----------AC---ATAACACTC---TTAGT--AT-TCA--TA---TTTCA-A--CCTCCTATG----C----AATTGAC----GTCGTAGTG--C-----------AGTGGTAGAGCATT--CGCCTGAAAATCTGGAGGTCCGAGTACAATTTCCCGAT-AGGTCAA-A-TATGTTTTTGT-ATTT--------T-----TTTCTTTT-TCTTTTTCTAGTTATAACTCCTTCCTTTTAAATAAAAAAAAGATCATAGTATATCAAAGATATTTCAAAGTCGTCAAA----------------TAC-AC----G-TATATAGGAATCAAT--AT--------AAGA--A--------AAA-G---GTTATTGTTTGGTAGAG--GTGTGCCTGTTGGTCATTTTGG-CC-C-TGATCT----AC-A-----------------------T-CGGGGTCAATATTCAACAACAGGGCCACTATGACTA-ACAGGCACTCC--TCTACCATACAATAA
gi|9 : AAAAATT-ATGTTGTTAGCCCATTTCGTTTAG-TTAATGTTA
gi|11 : aAAAAAT--ATGTTGTTAACCCGTTTCGTTTAT-ATAATGTTATTGTTGATTAAA-----------GTAAGT-ATACCAAT--------A--ACAA----------AC---ATAACACAC---TTAGT--AT-CTA--TA---TCTCT-G--CGT---ATT----A----CATCGGT----GCCTTAGTC--CAATACTAGTGTAGTGGTAGAGCATT--CGCCATTAAATCTGGAGATCCTAGTACTATTCACCGAC-GGGACAA-T-TTTTTTTTAGT-A-TT--------T-----TTT---CT-TCTATT-----TT-T----------TTTT--ATAAGAAAGAGACCATGGTATTTCGCGGAAATT-GAAAGCCGTCAAA----------------TAgttatctcatcatattcaactggcgctgtagtccagtggtagagcatttgcctgtaaaactggagatccgagttctattccccgacagaataaattatttgtagtatttttctactattgatcgctctttccttttgaatgaaaaagagaccatagtatatcagggaaattcaaagttgtcaaatacacacatatatataggtataaatgtaataaaaaggttatagtatggtagaggtgtgcctgttggtcataccaacattggaacactagggccaatatgaccaataggcacacctctaccatacaa
gi|13 : AAAAATT-ATGTCGTAAACCCATTTCGTTTAC-TAAATCTTATTTTTGATTAAA-----------GGAAGT-AT--CAAT--------AACAAAAAT--------AC---ATTACACCC---TTAGT--AT-TTA--TATATTATCA-T--CAT---ATT----C----AATC-------GGCATAATT--T-----------AATTGTAGAGCATT--CGCCAGTAAATCTTGAGATCCGAGGTCTATTTTCTGAC-AGGACAA-aa
gi|15 : aAAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTGATACTATTGTTGACTAAA-----------GGAAGT-AT--CAAT--------AA-AAAA----------AC---ATAACACAC---TTAGT--AT-TTA--TA---TCTCA-T--CGT---ACT----C----AATCGGC----ACCGTAttgctagctaaaaaagagactatagtatatcaagaaaattcaaagtcatcaaatacacatatgtaggtataaatg
gi|28 : AAAAATT-ATGTTGTAAACCCGTTTCGTTcaattccccgacaggacagattttttgtagtatttcttttctatttttttatattgtttannnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|4 : aAAAA---ATGTCGTAAACCCATTTCGCTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT--------A--AAAA----------AC---ATAACACTC---AAAGT--TT-TTG--TA---TCTCATACTCAC---ATT----C----AATCGGT----GCCGTAGTC--C-----------AGTGGTAGAGCATC--CGCCTATAAATCTGGAGATCCTAGTTCTATTCCCCGAC-AGGACAATT-TTTTTTGTAGT-ATTT-------------------------TATT----GTT-AA-TTTTTTTCTGTTGAATAAAAAAGAAACCATAGCATATCACGGAAATT-CGAAGTCATTAAA----------------TAA-ACACAATGTATATAGGTATAAAT--GT--------AATA--A--------AAA-G---GTTATAGTATGATACAG--GTGTGCCTGTTGATCATA----------TAGTGTTCC-GC-AC-TGGAAC-----------ACCA----GGGCCAAT-------------------ATGACCA-ACAAGCACACC--TCTACCATACAATAACC--TCT-------A---AT
gi|7 : AAAATT-ATGCTGTAAACCCGTTTCGTTTATCTTAATGCTATTGTTGATTACA-----------GGAAGT-AT--CAAT--------AG-AAAAT---------AC---ATAACACCC---TTAAT--AT-GTA--TG---TCTCG-A--TTT---ATTTTTTA----AATCGGC----GCCGTAGTG--C-----------AGTGGTAGAGCATT--CGCCTGTAAATCTGGAGATCCGAATTCTATTCCCTGAC-ACGACAA-T-TTTTTTGTAGT-ATTT--------T-----TTT---T-----ATT----GTT-TA-CTCTTTCTTTTTGAATAAAATAGAGACAATAGTATATAACAGAAATT-CAAAGTCGTCAAA----------------TAC-AC----A-TATATAGGTATAAAT--GT--------AATA--A--------AA--G---GTTATAGTATGGTAGAG--GTGTACCTGTTGGTCATATCGGTCC-
gi|10 : AAATTGATGTTGTAAACCCGTTTCGTTTAT-TTAA-GTTAGTGTCGATTAAA-----------GGAAGT-TC--CAAT--------AA-AAAAAAAGCCAAATAC---ATAACACGC---TTAGT--AT-TTA--TG---TTGCG-T--CGT---AAT----C----AATCAGC----GACGTAGTT--A-----------AGTGGTAGTGCATT--CGCCTGTTAATCTGAAGATAAGAGATCTATT-CCCGACAAGAACAA-A---ATTTGTAGC-ATTT--------TTTCTCTTT---TT-TCTA-T----GTT-AA-CT------------------------CCATTGTATATCACGGAAATT-CAAAGTCGTCAAA----------------TAC-GC----A-TATATGAACATAAAT--GT--------AATA--A--------AAA-G---GTTACAGTATGGTAAAaatatggaacaccagggacaatatgaccaacagg
gi|6 : AATT-G-GTTGTAAATCCATTTCGTTTAT-TAATTGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT--------C--AAAA----------AC---ATAACACTG---TTAGT--AT-TTA--TA---TCTCA-T--CGT---ATT----C----AATCGGC----GCCGTAGGC--G-----------AGTGGTAGAGCAAA--CGCCTGTAAATCTCGAGATTCGAGTTAAATTCCCCGAC-AGGACAA-AATGTTTTGTAGTCATTT--------T-----TTT---TTCTCTTTT----TTT-T--CTATTG----TT-AATAAAAAA----TCATAGTATATCACGAACATT-CAAAGTCGTTAAA----------------TAC-AC----A-CATATATATATAAAT--GT--------AAAA--G--------AAA-G---ATTATGGTATGGTAGAG--ATGTGCCTGTTGGTCATATTGG-CC-C-TGGTCTTCT-AC-AT-T-----TTA--------------------CAGTATGGAACACCTGGCCCAATATAACCATACA
gi|5 : T-ATGTTGTAAACCCATTTTGTTAAT-TCATTGTTATTGTTAATTAAA-----------GGAAGT-AT--CAA------------------------------------ACGC---TTGGT--AG-TTA--TA---TCTCA-A--CGT---ATT----G----AACTGGC----GCTGAAGTC--C-----------AGTGGTAAAACATT--CGCCTGTAAATCTGTAGGTCCTATTTCTATTCCCCGAC-CTAACAT-A-TTTTTTGTCAT-ATTT--------T------TT---TT-TCTGTT----GTT-TA-CACTTTCCTTTTAAATAAAAAAGAGACCAAAGTATATCACGGAAATT-CAAAGCCATCAAA----------------AAT-AC----A-TATATAGGTATAAAT--GT--------AATA--A--------AAA-A---GTCATAGTATGGTAGTG--GTGTGCCTCTTGGTCATATTGGCCCGCATGGTCTTCC-ATAATATGGAAC-----------ACCA----GGGCCAAT-------------------ATGACCA-AGAGGC-C-----TCTACCATACAATAACC--TCT-------A---Aataatctct
gi|16 : T-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGCTTAAA-----------GGAAGT-AT--AAAC-----------AAAA----------TC---ATAACATGC---TTAGT--AT-TTA--TA---TGT------CAT---AGT---------AATCAATTGGCGCCGTAGTCGAC-----------AA-TATGGAACACTAGGGCC
gi|8 : aa-ATGT-ATAAACCCATCTCGTTTAT-TTAACGTTAGTGTTGATTAAA-----------A-AAGT-AT-----------------AAAA----------ACCCCATAACACTA---TTAGT--AT-TTA--TA---TCTCA------TG--ATT----GTTTTCATCAGC----GCCGTAGTC--T-----------AGTTGTATAGCATA--AGCCTGTAAATCTTGAGATCCGAGTTCTATTCCCCGTC-AGGATAA----------------------------------TT---TT-TATGTA----GTAATA----------TTTAAATAAAAAAAC--CCATAGTATTTCACGGAAATT-CAAAGTCGTCAAA----------------TAC-AC----A-TATATAGGTGTAAAT--GT--------AATA--A--------CAA-G---GTTATAGTATGGTAGAG--ATGTGCCTGTTGGTCATATTGG-CC-C-TGGTCTTCC-AC-AT-TGGCTCTC-G-GCCAAaatatgacaaacatgcacacacttctaccatacaataacttctaa
gi|17 : TGTTATAAACCCGTTTCGTTTAA-TAAATGTTATT-TCGACTAAACATAGCTAAAAGGAGGTCAT--TAATTTAACATGAC-AAAA----------AA---ATAACACGCAAAGTACT--AT-TAA--TA---TCCCA-A--TGT---TAT----G----AATCGAC----GTCGTAGTC--T-----------AGTtttgaccaacaggca
gi|9 : CGT---TTAGTTAATGTTAGTTA---TCTCA-T--CAT---ATT----C----AACTGGC----GCTGTAGTC--C-----------AGTGGTAGAGCATT--TGCCTGTAAAACTGGAGATCCGAGTTCTATTCCCCGAC-AGAATAA-A-TTATTTGTAGT-A--T--------T-----TTT---CT-ACTATT----GAT-CG-CTCTTTCCTTTTGAATGAAAAAGAGACCATAGTATATCAGGGAAATT-CAAAGTTGTCAAA----------------TAC-ACACA-TATATATAGGTATAAAT--GT--------AATA--A--------AAA-G---GTTATAGTATGGTAGAG--GTGTGCCTGTTGGTCA-----------------TACCAAC-AT-TGGA----A----------CAC-TAGGGCCAATATG----ACC---------------A-ATAGGCACACC--TCTACCATACAAgttttgtacaatatgg
gi|22 : aaaaaattatgttgttagcccatttAGTT--T-----------AGTGGTAGAGCATC--CGACTGCAGATCCAGAGGTC
gi|15 : ATTCCCCGAC-AGGACAG-A-TTTTTTGTAGT-ATTTCTTTTCTAT-----TTT---TT-TATATT----GTT-TA-cccggttcaaaacccgagtgttccctaatattttgttattatttcgtgataaaggaaactata
gi|14 : aaaaattatgttgtaaacccgtttcgtttatttgatactattgttgactaaaggaagtatcaataaaaaaacataacacacttagtatttatatctcatcgtactcaatcggcaccgtaca-A-TTTTT----GT-AGCC--------T-----TTT---TT-TCTATT----GTT-AA-CTCT--CCTTTT------AAAAGAGGTCATAGTATATCGCGGAAATT-CAAAGTCGTTAAAACCACATATTTTTTTTTAT-AA----A-TATATAGGTATAAAT--GT--------AATA--A--------AAA-G---GTTATAGTATGGTAGAG--GTGTGCCTGTTGGTAATATTGGCC--------CTTCC-AC-AT-TG-----------TAACACCA----AGGCCAATA-------------------TGACCA-ACATGCACTCG--TCTTGCATACAATAACC--TCT-------A---A----------ATGTC-G---GC--ATTACnnnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|13 : acTAAAAAAGAGACTATAGTATATCAAGAAAATT-CAAAGTCATCAAA----------------TAC-AC----A-TATGTAGGTATAAAT--G
gi|19 : aaaaaattatgtcgtaaacccatttcgtttactaaatcttatttttgattaaaggaagtatcaataacaaaaatacattacacccttagtatttatatattatcatcatattcaatcggcataatttaattgtagagcattcgccagtaaatcttgagatccgaggtctattttctgacaggacaattgctagcAGAGACCACAAC---TCATGGAAA---CATAATTTTCGAA----------------CTTGAC----C-TGCAT-TTTATAAATCAGT--------AGTA---------------GTCTGTTATTGTTTGGTAGAG--GTGTGCCTGTTGGTCATATTGG-AC-C-TGGCC
gi|3 : cggATACCATGGAAATT-CAAAATCGTTAAT----------------TAC-GC-------ATATATGTCTAAAT--GT--------AACA--A--------AAA-G---GTTGCAGTATGGCAGAG--GTATTCGTGTTGGTCATATTTG-TC-C-TGATCTTCC-GC-ATGTGCAAC--------AAAG--AT--------------GAACACCAGGACCAATATGACCA-ACATGCACACC--TCTgtcgactttat
gi|20 : CAAA----------------TAA-A-------TCTCTAGTTACACAT--GT--------AATA--A--------ACA-G---GTTATTGACTGGGAAAG--GTGTGTCTCTTGATttctttttaaatattaggcgtttgtagtttatactgcggtgcgttaaatttatttcaatgatgccacatgatttggtttaaaaatctaactttaattcccttttgcttatttaacagcatcatggtaagtcttttatgttttcttaactgtattcataagcataattgatgacataaaatataaattctgtttgacaataattgtgttgtccaggtatatgtctgaaatacttttgtacattttttaaaatattgataattga
gi|12 : gctttaAA----------------TAT-AT----A-TATATATCAACACAT--GT--------AATG--A--------AGT-G---GTAATAAATTGGGATTG--GTGGGCCTTTTGGTGAAATTGGCCC-gcttttagtccacatcaatatcagaagaacccctatcccagttaatcaacttctt
gi|18 : gtaatattaaaaggttataaactgggattggtgtgcctcttggtgatattggtccatttgatattgat-TATATTTGTTTAAAT--GTTTTGAAGCAATA--AGCAACGTTAAGAG---GTTATTGTATGGTAGAG--GTGTTCCTGTTGGTCATATTGG-CC-C-TGGTGTTCC-AT-AT-Tatcaaaaaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatttactcagttattcagttattcattgattaatcgatctatctattt
gi|12 : gaagta--GT--------AATATTA--------AAA-G---GTTATAAACTGGGATTG--GTGTGCCTCTTGGTGATATTGGTCC-aatcccgagagccaacgtggaaga
gi|5 : -G---GTTATTGTATGGTAGAG------GCCTCTTGGTCATATTGG-CC-C-TGGTGTTCC-AT-AT-T--AT----G-G--AAGACCAT-GCGGGCCAAT-------------------ATGACCA-AGAGGCACACC--ACTACCATACTATGACT--TTT-------atttgatattgatgggccaatttcaccaaaaggcccaccaatcccaatttattaccacttcattacatgtgttgatatatatatatattatcaaaaaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatttactcagttattcagttattcattgattaatcgatctatctattt
gi|4 : tatgttgtaaacccattttgttaattcattgttattgttaattaaaggaagtatcaaacgcttggtagttatatctcaacgtattgaactggcgctgaagtccagtggtaaaacattcgcctgtaaatctgtaggtcctatttctattccccgacctaacatattttttgtcatatttttttttctgttgtttacactttccttttaaataaaaaagagaccaaagtatatcacggaaattcaaagccatcaaaaatacatatataggtataaatgtaataa-G---GTTATTGTATGGTAGAG--GTGTGCTTGTTGGTCATATTGG-CC-C-TGGTGTTCC-Atctaa
gi|14 : aaaaatgtcgtaaacccatttcgcttatttaatgttattgttgattaaaggaagtatcaataaaaaacataacactcaaagtttttgtatctcatactcacattcaatcggtgccgtagtccagtggtagagcatccgcctataaatctggagatcctagttctattccccgacaggacaattttttttgtagtattttattgttaatttttttctgttgaataaaaaagaaaccatagcatatcacggaaattcgaagtcattaaataaacacaatgtatataggtataaatgtaataaaaaggttatagtatgatacaggtgtgcctgttgatcatatagtgttccgcac-G---GTTATTGTATGCAAGAC--GAGTGCATGTTGGT----------------------C-AT-AT-TGG-CCTTGGTGTTA--------------CAATGTGGAA-----GGGCCAATATTACCA-ACAGGCACACC--TCTACCATACTATAACC--TTT-------tctaat
gi|24 : acatttttgtagcctttttttctattgttaactctccttttaaaagaggtcatagtatatcgcggaaattcaaagtcgttaaaaccacatatttttttttataaatatataggtataaatgtaataa-G---GTTATTGTATGGTAGAG--GTGTGCCTGTTGGTCATATTGG-CC-C-TAGTGTTCC-AT-Atctaaatgtcggcattac
gi|23 : tgga-G---GTTATTGTATGGTAGAG--GTGTGCGTGTTGGTCATATTGG--C-C-TGGTGTTCC-AT-AT-T
gi|16 : t---GTTATTGTATGGTAGAAGTGTGTGCATGTTTGTCATATTGG-CC-C-TAGTGTTCC-AT-AT-TGtct
gi|21 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatgtcatagtaatcaattggcgccgtagtcga---GTTACAGTATCGTAGAT--GTGTGA-TGTTGGTCATATTCGCCC---TGGTGTTCC-AT-AT-CGGTCCGAGG-GCTATAGCttctaa
gi|2 : TTATTGTATGGTAGAG--GAGTGCCTGTTAGTCATAGTGGCCC---TGTTGTTGA-AT-AT-TG-ACC----------------------CCGATGTAGA---TCAGGGCCAAAATGACCA-ACAGGCACACC--TCTACCAAACAATAACC--TTT-------aaacctctaccatacaataacctctaatcat
gi|9 : aaaaaatgttgtaaacccatttcacttatttaatgttattgttgatcaaagtatcaataaaaacataacactcttagtattcatatttcaacctcctatgcaattgacgtcgtagtgcagtggtagagcattcgcctgaaaatctggaggtccgagtacaatttcccgataggtcaaatatgtttttgtatttttttctttttctttttctagttataactccttccttttaaataaaaaaaagatcatagtatatcaaagatatttcaaagtcgtcaaatacacgtatataggaatcaatataagaaGTATGGTAGAG--GTGTGCCTATTGGTCATATTGG-CC-C-TAGTGTTCCAAT-GT-TGG
gi|3 : aaaaaattatgttgttagcccatttcgtttagttaatgttagttatctcatcatattcaactggcgctgtagtccagtggtagagcatttgcctgtaaaactggagatccgagttctattccccgacagaataaattatttgtagtatttttctactattgatcgctctttccttttgaatgaaaaagagaccatagtatatcagggaaattcaaagttgtcaaatacacacatatatataggtataaatgtaataaaaaggttatagtatggtagaggtgtgcctgttggtcataAGAG--GTGTGCATGTTGGTCATATTGG-TC-C-TGGTGTTC-----------ATCT--------------T-TGTTGCACATGCGGAAGATCAGGACAAATATGACCA-ACACGAATACC--TCTGCCATACTGCAACC--TTTTTGTTACA---TTTAGACATATATGCGTA---ATTAACGATTTTGAATTTCC--ATGGTATT---TCTTTTTAAATATTAGGCGTT-TGTAGTTTATACTGCGGTGCGTTAAATTTA--TTTCAA------TGATGCCACATGATTTGGTTTAAAAATC--TAAC----TTT---AATTCCCTTTTGC-TTATaa
gi|8 : TGCCTGTTGGTCAAATTGGCCttaacagcatcatggtaagtcttttatgttttcttaactgtattcataagcataattgatgacataaaatataaattctgtttgacaataattgtgttgtccaggtatatgtctgaaatacttttgtacattttttaaaatattgataattga
gi|7 : atgtataaacccatctcgtttatttaacgttagtgttgattaaaaaagtataaaaaccccataacactattagtatttatatctcatgattgttttcatcagcgccgtagtctagttgtatagcataagcctgtaaatcttgagatccgagttctattccccgtcaggataatttttatgtagtaatatttaaataaaaaaacccatagtatttcacggaaattcaaagtcgtcaaatacacatatataggtgtaaatgtaataacaaggttatagtatggtagagatgtgcctgttggtcatattggccctggtcttccacattggctctcCCTGTTGGTCATATTG-TCC-C-TGGTGTTCC-AT-AT-TGGACC
gi|18 : aaaattatgctgtaaacccgtttcgtttatcttaatgctattgttgattacaggaagtatcaatagaaaatacataacacccttaatatgtatgtctcgatttattttttaaatcggcgccgtagtgcagtggtagagcattcgcctgtaaatctggagatccgaattctattccctgacacgacaatttttttgtagtattttttttattgtttactctttctttttgaataaaatagagacaatagtatataacagaaattcaaagtcgtcaaatacacatatataggtataaatgtaataaaaggttatagtatggtagaggtgtacctgttggtcatatcTCTTCC-AC-GT-TGGCTCTCGG-G--------AT-T------AATATGGAACACCAGGGCCAATATGACCA-ACAGGAACACC--TCTACCATACAATAACC--TCT-------
gi|21 : gaagtatatatttgtttaaatgttttgaagcaataagcaacgtta-GCTATAGCCCT-CGGA-CCGATATGGAACACCAGGGCGAATATGACCA-ACA-TCACACA--TCTACGATACTGTAAC
gi|7 : GTCATATCGGTCCAATATGGAACACCAGGGACAATATGACCA-ACAGGaaacctctaccatacaataacctctaatcat
gi|8 : aaaattatgctgtaaacccgtttcgtttatcttaatgctattgttgattacaggaagtatcaatagaaaatacataacacccttaatatgtatgtctcgatttattttttaaatcggcgccgtagtgcagtggtagagcattcgcctgtaaatctggagatccgaattctattccctgacacgacaatttttttgtagtattttttttattgtttactctttctttttgaataaaatagagacaatagtatataacagaaattcaaagtcgtcaaatacacatatataggtataaatgtaataaaaggttatagtatggtagaggtgtacctgttgGAGCCAATGTGGAAGACCAGGGCCAATATGACCA-ACAGGCACATC--TCTACCATACTATAACC--T
gi|4 : atgtataaacccatctcgtttatttaacgttagtgttgattaaaaaagtataaaaaccccataacactattagtatttatatctcatgattgttttcatcagcgccgtagtctagttgtatagcataagcctgtaaatcttgagatccgagttctattccccgtcaggataatttttatgtagtaatatttaaataaaaaaacccatagtatttcacggaaattcaaagtcgtcaaatacacatatataggtgtaaatgtaataacaCCAGTGCGGAACACTA-------TATGATCA-ACAGGCACACC--TGTATCATACTATAACCTTTTT-------A---TTACAT---TTATACCTATATAC--ATTG-TGT---TTATTTAATGACTTCGAATtcggccaatttgaccaacaggca
gi|16 : aaaaatgtcgtaaacccatttcgcttatttaatgttattgttgattaaaggaagtatcaataaaaaacataacactcaaagtttttgtatctcatactcacattcaatcggtgccgtagtccagtggtagagcatccgcctataaatctggagatcctagttctattccccgacaggacaattttttttgtagtattttattgttaatttttttctgttgaataaaaaagaaaccatagcatatcacggaaCAATATGGAACACTAGGGCCAATATGACAA-ACATGCACACACTTCTACCATACAATAACT--TCT-------A---Aaacaccagggccaatatgaccaacaagcacacctctaccatacaataacctctaat
gi|6 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatgtcatagtaatcaattggcgccgtagtcgaAATGTAGAAGACCAGGGCCAATATGACCA-ACAGGCACATC--TCTACCATACCATAATC--TTTCTTTTACATTTATATAT---ATATGTGTG---------TA--------TTT--AACGACTTTGAATGTT
gi|23 : aattggttgtaaatccatttcgtttattaattgttattgttgattaaaggaagtatcaatcaaaaacataacactgttagtatttatatctcatcgtattcaatcggcgccgtaggcgagtggtagagcaaacgcctgtaaatctcgagattcgagttaaattccccgacaggacaaaatgttttgtagtcatttttttttctcttttttttctattgttaataaaaaatcatagtatatcacgAATATGGAACACCAG-GCCAATATGACCA-ACACGCACACC--TCTACCATACAATAACC--TCT-------ttacagtatggaacacctggcccaatataaccatacaataatctct
gi|24 : tTATGGAACACTAGGGCCAATATGACCA-ACAGGCACACC--TCTACCATACAATAACC--TCC-------A---
gi|19 : CCAGGTCCAATATGACCA-ACAGGCACACC--TCTACCAAACAATAAC
gi|27 : cggggGCCAATATGACCA-CCATGCACACT--TCTACTATACAATAACC--TCT-------A---Aagactactactgatttataaaatgcaggtcaagttcgaaaattatgtttccatgagttgtggtctctgtcgactttat
gi|7 : CCGATATGACCA-ACAGGTACACC--TCTACCATACTATAACC--TTT-------T---AT
gi|9 : aaaattatgctgtaaacccgtttcgtttatcttaatgctattgttgattacaggaagtatcaatagaaaatacataacacccttaatatgtatgtctcgatttattttttaaatcggcgccgtagtgcagtggtagagcattcgcctgtaaatctggagatccgaattctattccctgacacgacaatttttttgtagtattttttttattgtttactctttctttttgaataaaatagagacaatagtatataacagaaattcaaagtcgtcaaatacacatatataggtataaatgtaTATGACCA-ACAGGCACACC--TCTACCATACTATAACC--TTT-------tccaatatggaacaccagggacaatatgaccaacagg
gi|21 : aaaaaattatgttgttagcccatttcgtttagttaatgttagttatctcatcatattcaactggcgctgtagtccagtggtagagcatttgcctgtaaaactggagatccgagttctattccccgacagaataaattatttgtagtatttttctactattgatcgctctttccttttgaatgaaaaagagaccatagtatatcagggaaattcaaagttgtcaaatacacacatatatataggtataaatgtaataaGCAAACC--TCTACCATACAATAACC--TCT-------A---ATccaacattggaacactagggccaatatgaccaataggcacacctctaccatacaa
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|25 ): CTTTGCTAATTTAAAATTCCAGAAACACATGTAATAAACAGGTTTTTAACTGGGAGAG
Unaligned ( gi|26 ): TATTGAACAGACTGTTATCAACATGTAAAGTCAAGCGGGGATATTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111 1111111111111
lowQualScore : 11111111111 111111111111 2222222222222222222 1111 11111111111 11111111111111 111 11111111111111111111 77777777777777777777777777777777777777777777777 2222 888888888888888 1111111111111 2222 2 11 2222 222 22 555555 222 22 5555555555 2
lowQualScore : 2 2 44444444444 3 44 999999999999 3 4444444444444444444 1 555 33 2 33 555 1111 555 6666 44444444444 3 3 777777 3 55555555555555 7777 8888888888 111 3 99999999999999999999 66666666 33 33 444 1 3 2 55555555555555555555555555555555555555555555555 0 0 33 2 2 33 3 99999 4 1111 1 4 2 111111111111111 4 1 0000000000000 4 4 3333 0 88 3333 55 111 77 777777 2 4 111 77 0000000000 2 0
lowQualScore : . . ........... . .. ............ . ................... . ... .. . .. ... .... ... .... ........... . . ...... . .............. .... .......... ... . .................... ........ .. .. ... . . . ............................................... . . .. . . .. . ..... . .... . . . ............... . . ............. . . .... . .. .... .. ... .. ...... . . ... .. .......... . .
lowQualScore : 9 9 66666666666 1 22 999999999999 1 0000000000000000000 0 000 99 9 99 000 0000 000 1111 66666666666 3 3 111111 3 55555555555555 1111 8888888888 555 1 77777777777777777777 11111111 77 99 777 0 2 9 22222222222222222222222222222222222222222222222 5 3 22 5 7 77 6 11111 4 2222 0 0 5 000000000000000 0 0 0000000000000 0 0 0000 0 00 0000 00 555 55 555555 5 0 555 55 5555555555 5 0
consensus : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATA--AAAAG---GTTATAGTATGGTAGAGGTGTGCCTGTTGGTCATATTGG-CCC---TGGT-TTCC-ACATTG------------------T--GG-C--CAATATGGAACACC--AGGGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
Reference ( family-1276 ) : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACNC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATA--AAAAG---GTTATNGTATGGTAGAGGTGTGCCTGTTGGTCATATTGG-CCC---TGGTGTTCC-ACATTGGACC--------GAGCCAT--GGGC--CAATATGGAACACC--AGGGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANATATATGCGTGACATTACT-TTTTTC-AACGACTTTGAATNT-------------TTTTAAATATTAGGCGTT-TGTAGTTTATACTGCGGTGCGTTAAATTTA--TTTCAA------TGATGCCACATGATTTGGTTTAAAAATC--TAAC----TTT---AATTCCCTTTTGC-TTAT
gi|1 : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------AGA-AAA---A-----------C---ATAACACGC---TTGGT--AT-TTA--TA---TCTCAA---CAT---ATTG----AATCAATGCCATAGTTCA-----------GTTGTAGAGCATTGGCCCGTAAATCTGTAGGTCTGAGTTGTATTCCCCGAC-AGCAC-AA-AT---TTTTTGTCGTATTT--------T-----TTTTTTCTGTT----GTT-TA-CTCTTGCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGCCATCAAA----------------T---ATAC----T---TATATAGGTATAAAT--GTAATA--AAAGG---GTTATAGTATGGTAGAGGTGTGCCTGTTGGTCAAATTGGCCCC---TGGTCTTCC-ACATTGGACCTCAGGCTAAAGCCATTGGGGC--CAATATGGAACACC--AGAGCCAATATGACCA-ACAGG--CACATGTCTACCATACAATAACC-TCT-----A-AT----AAAAATATGTCTGACACTACTCTTTTTCAAATGACATTGAATGT-------------TTACATGTATT----GTTGTGTA--TTATA----GGTCAGTTA---TTAACTTTCAATAAACTTGATGTGATTTGATTTGATTT---GATCCATAACAGAATTTACAAATTTGTTCTTGCATTAT
gi|10 : AAATTGATGTTGTAAACCCGTTTCGTTTAT-TTAA-GTTAGTGTCGATTAAA-----------GGAAGT-TC--CAAT----------A-A-AAA---AAAAGCCAAATAC---ATAACACGC---TTAGT--AT-TTA--TG---TTGCGT---CGT---AATC----AATCAGCGACGTAGTTAA-----------GTGGTAGTGCATTCGCCTGTTAATCTGAAGATAAGAGATCTATT-CCCGACAAGAAC-AA-A-----ATTTGTAGCATTT--------TTTCTCTTTTTTCTA-T----GTT-AA-CT--------------------------CCATTGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACGC----A---TATATGAACATAAAT--GTAATA--AAAAG---GTTACAGTATGGTAAAgtctgaaattatgaggactttat
gi|11 : AAAAAT--ATGTTGTTAACCCGTTTCGTTTAT-ATAATGTTATTGTTGATTAAA-----------GTAAGT-ATACCAAT----------A-A-CAA---A-----------C---ATAACACAC---TTAGT--AT-CTA--TA---TCTCTG---CGT---ATTA----CATCGGTGCCTTAGTCCAATACTAGTGTAGTGGTAGAGCATTCGCCATTAAATCTGGAGATCCTAGTACTATTCACCGAC-GGGAC-AA-TT---TTTTTTTAGTA-TT--------T-----TTTCTTCTATT-----TT-T----------TTTT----ATAAGAAAGAGACCATGGTATTTCGCGGAAATT-GAAAGCCGTCAAA----------------T---A
gi|12 : --GTAATATTAAAAG---GTTATAAACTGGGATTGGTGTGCCTCTTGGTGATATTGG-TCC-------ATTTG-ATATTG-----------------AT--GGGC--CAATTT----CACCAAAAGGCCaa
gi|12 : AA----------------T---ATAT----A---TATATATCAACACAT--GTAATG--AAGTG---GTAATAAATTGGGATTGGTGGGCCTTTTGGTGAAATTGG-C------------------------------------CCAT--------CAATATCAAAT------GGACCAATATCACCA-AGAGG--CACACCAATCCCAGTTTATAACCTTTT-----A-AT----Acaccaatcccaatttattaccacttcattacatgtgttgatatatatatatattatcaaaaaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatttactcagttattcagttattcattgattaatcgatctatctattt
gi|13 : gtaaAAAAATT-ATGTCGTAAACCCATTTCGTTTAC-TAAATCTTATTTTTGATTAAA-----------GGAAGT-AT--CAAT----------A-ACAAAAATA-----------C---ATTACACCC---TTAGT--AT-TTA--TATATTATCAT---CAT---ATTC----AATCGG---CATAATTTA-----------ATTGTAGAGCATTCGCCAGTAAATCTTGAGATCCGAGGTCTATTTTCTGAC-AGGAC-AA-atcaaaaaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatttactcagttattcagttattcattgattaatcgatctatctattt
gi|13 : aTAAAAAAGAGACTATAGTATATCAAGAAAATT-CAAAGTCATCAAA----------------T---ACAC----A---TATGTAGGTATAAAT--Gttgctagctaaaaaagagactatagtatatcaagaaaattcaaagtcatcaaatacacatatgtaggtataaatg
gi|14 : aaaaaattatgtcgtaaacccatttcgtttactaaatcttatttttgattaaaggaagtatcaataacaaaaatacattacacccttagtatttatatattatcatcatattcaatcggcataatttaattgtagagcattcgccagtaaatcttgagatccgaggtctattttctgacaggacaattgctagc---TTTTTGTAGC---C--------T-----TTTTTTCTATT----GTT-AA-CTCT--CCTTTT--------AAAAGAGGTCATAGTATATCGCGGAAATT-CAAAGTCGTTAAAACCACATATTTTTTTTT---ATAA----A---TATATAGGTATAAAT--GTAATA--AAAAG---GTTATAGTATGGTAGAGGTGTGCCTGTTGGTAATATTGG-CCC--------TTCC-ACATTG------------------T----------------AACACC--AAGGCCAATATGACCA-ACATG--CACTCGTCTTGCATACAATAACC-TCT-----A-A
gi|15 : acaAAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTGATACTATTGTTGACTAAA-----------GGAAGT-AT--CAATA---------A-A-AAA---A-----------C---ATAACACAC---TTAGT--AT-TTA--TA---TCTCAT---CGT---ACTC----AATCGGCACCGTAatgtcggcattac
gi|15 : ATTCCCCGAC-AGGAC-AG-AT---TTTTTGTAGTATTTCTTTTCTAT-----TTTTTTATATT----GTT-TA-caattccccgacaggacagattttttgtagtatttcttttctatttttttatattgtttannnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaaaattatgttgtaaacccgtttcgtttatttgatactattgttgactaaaggaagtatcaataaaaaaacataacacacttagtatttatatctcatcgtactcaatcggcaccgtacaT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGCTTAAA-----------GGAAGT-AT--AAAC------------A-AAA---T-----------C---ATAACATGC---TTAGT--AT-TTA--TA---TGTCAT---AGT---AATC----AATTGGCGCCGTAGTCnnnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaGCCGT--AGTCGACAATATGGAACACT--AGGGCCAATATGACAA-ACATGCACACACTTCTACCATACAATAACT-TCT-----A-Agacaatatggaacactagggccaatatgacaaacatgcacacacttctaccatacaataacttctaa
gi|17 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatgtcatagtaatcaattggcTGTTATAAACCCGTTTCGTTTAA-TAAATGTTATT-TCGACTAAACATAGCTAAAAGGAGGTCAT--TAATTTAACATGACA-A-AAA---A---------------ATAACACGCAAAGTACT--AT-TAA--TA---TCCCAA---TGT---TATG----AATCGACGTCGTAGTCTA-----------GTG
gi|18 : TTCC-ACGTTGGCTC--------TCG------GGAT--TAATATGGAACACC--AGGGCCAATATGACCA-ACAGG--AACACCTCTACCATACAATAACC-TCT-----ttttgtacaatatgg
gi|19 : gaagtatatatttgtttaaatgttttgaagcaataagcaacgttaAGAGACCACAAC---TCATGGAAA---CATAATTTTCGAA----------------CTTGACCT----G---CATTT---TATAAATCAGTAGTA------GTCTGTTATTGTTTGGTAGAGGTGTGCCTGTTGGTCATATTGG-ACC---TGGga
gi|2 : cggggAAAAA---ATGTTGTAAACCCATTTCACTTAT-TTAATGTTATTGTTGATCAAA-----------G----T-AT--CAAT----------A-A-AAA---------------C---ATAACACTC---TTAGT--AT-TCA--TA---TTTCAA---CCTCCTATGC----AATTGACGTCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGAAAATCTGGAGGTCCGAGTACAATTTCCCGAT-AGGTC-AA-ATATGTTTTTGTATTTTTT--------T-----CTTTTTCTTTTTCTAGTTATAACTCCTTCCTTTTA--AATAAAAAAAAGATCATAGTATATCAAAGATATTTCAAAGTCGTCAAA----------------T---ACAC----G---TATATAGGAATCAAT--ATAAGA--AAAAG---GTTATTGTTTGGTAGAGGTGTGCCTGTTGGTCATTTTGG-CCC---TGA---TCT-ACATCG---------------------GGGT--CAATATTCAACAAC--AGGGCCACTATGACTA-ACAGG--CACTCCTCTACCATACAATAAgtcgactttat
gi|20 : CAAA----------------T---A-A-----A---TCTCTAGTTACACAT--GTAATA--AACAG---GTTATTGACTGGGAAAGGTGTGTCTCTTGAT
gi|21 : gctttaAGAG---GTTATTGTATGGTAGAGGTTTGC----------TA-TAG-CCC----------------TCGGACC--------G----------------ATATGGAACACC--AGGGCGAATATGACCA-ACA-T--CACACATCTACGATACTGTAACgcttttagtccacatcaatatcagaagaacccctatcccagttaatcaacttctt
gi|22 : AGTTTA-----------GTGGTAGAGCATCCGACTGCAGATCCAGAGGTCCaatcat
gi|23 : AATATGGAACACC--AGG-CCAATATGACCA-ACACG--CACACCTCTACCATACAATAACC-TCT-----ccggttcaaaacccgagtgttccctaatattttgttattatttcgtgataaaggaaactata
gi|24 : tTATGGAACACT--AGGGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCC-----A-
gi|27 : GCCAATATGACCA-CCATG--CACACTTCTACTATACAATAACC-TCT-----A-A
gi|28 : AAAAATT-ATGTTGTAAACCCGTTTCGTT
gi|3 : aAGAGGTGTGCATGTTGGTCATATTGG-TCC---TGGTGTTCA-TCTTTGT-----------------T--GCAC----ATGCGGAAGATC--AGGACAAATATGACCA-ACACG--AATACCTCTGCCATACTGCAACC-TTTTTGTTACATTTAGACATATATGCGTAA------------TT-AACGATTTTGAATTTCCATGGTATTTCTTTTTAAATATTAGGCGTT-TGTAGTTTATACTGCGGTGCGTTAAATTTA--TTTCAA------TGATGCCACATGATTTGGTTTAAAAATC--TAAC----TTT---AATTCCCTTTTGC-TTAT
gi|4 : AAAA---ATGTCGTAAACCCATTTCGCTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACTC---AAAGT--TT-TTG--TA---TCTCATACTCAC---ATTC----AATCGGTGCCGTAGTCCA-----------GTGGTAGAGCATCCGCCTATAAATCTGGAGATCCTAGTTCTATTCCCCGAC-AGGAC-AATTT---TTTTTGTAGTATTT---------------------TATT----GTT-AA-TTTTTTTCTGTTG--AATAAAAAAGAAACCATAGCATATCACGGAAATT-CGAAGTCATTAAA----------------TAA-ACAC----AATGTATATAGGTATAAAT--GTAATA--AAAAG---GTTATAGTATGATACAGGTGTGCCTGTTGATCATA-----------TAGTGTTCC-GCAC----------------------------------TGGAACACC--AGGGCCAATATGACCA-ACAAG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ttaacagcatcatggtaagtcttttatgttttcttaactgtattcataagcataattgatgacataaaatataaattctgtttgacaataattgtgttgtccaggtatatgtctgaaatacttttgtacattttttaaaatattgataattga
gi|5 : T-ATGTTGTAAACCCATTTTGTTAAT-TCATTGTTATTGTTAATTAAA-----------GGAAGT-AT--CAA------------------------------------------ACGC---TTGGT--AG-TTA--TA---TCTCAA---CGT---ATTG----AACTGGCGCTGAAGTCCA-----------GTGGTAAAACATTCGCCTGTAAATCTGTAGGTCCTATTTCTATTCCCCGAC-CTAAC-AT-AT---TTTTTGTCATATTT--------T------TTTTTCTGTT----GTT-TA-CACTTTCCTTTTA--AATAAAAAAGAGACCAAAGTATATCACGGAAATT-CAAAGCCATCAAA----------------A---ATAC----A---TATATAGGTATAAAT--GTAATA--AAAAA---GTCATAGTATGGTAGTGGTGTGCCTCTTGGTCATATTGG-CCCGCATGGTCTTCC-A--------------------------------TAATATGGAACACC--AGGGCCAATATGACCA-AGAGG------CCTCTACCATACAATAACC-TCT-----A-A
gi|6 : AATT-G-GTTGTAAATCCATTTCGTTTAT-TAATTGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------C-A-AAA---A-----------C---ATAACACTG---TTAGT--AT-TTA--TA---TCTCAT---CGT---ATTC----AATCGGCGCCGTAGGCGA-----------GTGGTAGAGCAAACGCCTGTAAATCTCGAGATTCGAGTTAAATTCCCCGAC-AGGACAAA-AT---GTTTTGTAGTCATT--------T-----TTTTTTCTCTT------------TTTTTTCTATTGTTAATAAAAA----ATCATAGTATATCACGAACATT-CAAAGTCGTTAAA----------------T---ACAC----A---CATATATATATAAAT--GTAAAA--GAAAG---ATTATGGTATGGTAGAGATGTGCCTGTTGGTCATATTGG-CCC---TGGTCTTCT-ACATTTTA-------------------------CAGTATGGAACACC--TGGCCCAATATAACCATACA
gi|7 : AAAATT-ATGCTGTAAACCCGTTTCGTTTATCTTAATGCTATTGTTGATTACA-----------GGAAGT-AT--CAAT----------A-G-AAA---ATA---------C---ATAACACCC---TTAAT--AT-GTA--TG---TCTCGA---TTT---ATTTTTTAAATCGGCGCCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAATTCTATTCCCTGAC-ACGAC-AA-TT---TTTTTGTAGTATTT--------T-----TTTT----ATT----GTT-TA-CTCTTTCTTTTTG--AATAAAATAGAGACAATAGTATATAACAGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATA--AAA-G---GTTATAGTATGGTAGAGGTGTACCTGT-------------------TGGT----C-ATATCGG-----------------T-----C--CAATATGGAACACC--AGGGACAATATGACCA-ACAGG--ataatctct
gi|8 : -ATGT-ATAAACCCATCTCGTTTAT-TTAACGTTAGTGTTGATTAAA-----------A-AAGT-AT------------------A-AAA---A-----------CCCCATAACACTA---TTAGT--AT-TTA--TA---TCTCATGATTGT---TTTC----A-TCAGCGCCGTAGTCTA-----------GTTGTATAGCATAAGCCTGTAAATCTTGAGATCCGAGTTCTATTCCCCGTC-AGGAT-A-----------------ATTT--------T-----TATGTAGTAAT----ATT-TA----------------AATAAAAAAAC--CCATAGTATTTCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTGTAAAT--GTAATA--ACAAG---GTTATAGTATGGTAGAGATGTGCCTGTTGGTCATATTGG-CCC---TGGTCTTCC-ACATTG--------------GCTCT--CGGC--CAAT-TTGACCAAC--AGG
gi|9 : AAAAATT-ATGTTGTTAGCCCATTTCGTTTAG-TTAATGTTAca
gi|9 : aCGT---TTAGTTAATGTTAGTTA---TCTCAT---CAT---ATTC----AACTGGCGCTGTAGTCCA-----------GTGGTAGAGCATTTGCCTGTAAAACTGGAGATCCGAGTTCTATTCCCCGAC-AGAAT-AA-AT---TATTTGTAGTA--T--------T-----TTTCTACTATT----GAT-CG-CTCTTTCCTTTTG--AATGAAAAAGAGACCATAGTATATCAGGGAAATT-CAAAGTTGTCAAA----------------T---ACACACATA---TATATAGGTATAAAT--GTAATA--AAAAG---GTTATAGTATGGTAGAGGTGTGCCTGTTGGTCATA------------------CCAACATTGGA----------------------------------ACACT--AGGGCCAATATGACCA-ATAGG--CACACCTCTACCATACAAgttatctcatcatattcaactggcgctgtagtccagtggtagagcatttgcctgtaaaactggagatccgagttctattccccgacagaataaattatttgtagtatttttctactattgatcgctctttccttttgaatgaaaaagagaccatagtatatcagggaaattcaaagttgtcaaatacacacatatatataggtataaatgtaataaaaaggttatagtatggtagaggtgtgcctgttggtcataccaacattggaacactagggccaatatgaccaataggcacacctctaccatacaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CTTTGCTAATTTAAAATTCCAGAAACACATGTAATAAACAGGTTTTTAACTGGGAGAG
Unaligned ( gi|26 ): TATTGAACAGACTGTTATCAACATGTAAAGTCAAGCGGGGATATTAT
Alignments
lowQualScore : 11111111111 111111111111 2222222222222222222 1111 11111111111 11111111111111 111 11111111111111111111 8888888888888888888888888888888888888888888888888 1111 44444444444 11 55555555555555 2222 1 11 2222 222 11 333333 222 11 2222 222 1
lowQualScore : 2 2 44444444444 3 44 999999999999 3 4444444444444444444 3 555 33 2 33 555 1111 555 6666 44444444444 3 3 777777 3 55555555555555 7777 8888888888 111 3 99999999999999999999 66666666 33 444 33 2 4444444444444444444444444444444444444444444444444 2 33 2 33 3 88888 4 7777 1 1 2 33333333333 88 1 00000000000000 1 1 3333 5 88 3333 22 111 88 000000 2 1 111 88 4444 111 2 5
lowQualScore : . . ........... . .. ............ . ................... . ... .. . .. ... .... ... .... ........... . . ...... . .............. .... .......... ... . .................... ........ .. ... .. . ................................................. . .. . .. . ..... . .... . . . ........... .. . .............. . . .... . .. .... .. ... .. ...... . . ... .. .... ... . .
lowQualScore : 9 9 66666666666 1 22 999999999999 1 0000000000000000000 0 000 99 9 99 000 0000 000 1111 66666666666 3 3 111111 3 55555555555555 1111 8888888888 555 1 77777777777777777777 11111111 99 777 77 9 4444444444444444444444444444444444444444444444444 4 22 4 44 3 33333 0 0000 0 0 5 55555555555 00 0 00000000000000 0 0 0000 0 00 0000 00 555 00 000000 5 0 555 00 0000 000 5 5
consensus : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCC---TGGT-TTCCA-CATTG-----T-----------------GG--CCAATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
Reference ( family-1276 ) : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCC---TGGT-TTCCA-CATTG-----T-----------------GG--CCAATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
gi|1 : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------AGA-AAA---A-----------C---ATAACACGC---TTGGT--AT-TTA--TA---TCTCAA---CAT---ATTG----AATCAATGCCATAGTTCA-----------GTTGTAGAGCATTGGCCCGTAAATCTGTAGGTCTGAGTTGTATTCCCCGAC-AGCAC-AA-AT---TTTTTGTCGTATTT--------T-----TTTTTTCTGTT----GTT-TA-CTCTTGCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGCCATCAAA----------------T---ATAC----T---TATATAGGTATAAAT--GTAATAAAAGG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCAAATTGGCCCC---TGGTCTTCCA-CATTGGACC-TCAGGCTAAAGCCATTGGGG--CCAATA-TGGAACACCAG--AGCCAATATGACCA-ACAGG--CACATGTCTACCATACAATAACC-TCT-----A-AT----AAAAATATGTCTGACACTACTCTTTTTCAAATGACATTGAATG-------------TTTACATGTATT----GTTGTGTA--TTATA----GGTCAGTTA---TTAACTTTCAATAAACTTGATGTGATTTGATTTGATTT---GATCCATAACAGAATTTACAAATTTGTTCTTGCATTAT
gi|10 : AAATTGATGTTGTAAACCCGTTTCGTTTAT-TTAA-GTTAGTGTCGATTAAA-----------GGAAGT-TC--CAAT----------A-A-AAA---AAAAGCCAAATAC---ATAACACGC---TTAGT--AT-TTA--TG---TTGCGT---CGT---AATC----AATCAGCGACGTAGTTAA-----------GTGGTAGTGCATTCGCCTGTTAATCTGAAGATAAGAGATCTATT-CCCGACAAGAAC-AA-A-----ATTTGTAGCATTT--------TTTCTCTTTTTTCTA-T----GTT-AA-CT--------------------------CCATTGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACGC----A---TATATGAACATAAAT--GTAATAAAAAG---GTTACAGTATGGTAAAgtctgaaattatgaggactttat
gi|11 : AAAAAT--ATGTTGTTAACCCGTTTCGTTTAT-ATAATGTTATTGTTGATTAAA-----------GTAAGT-ATACCAAT----------A-A-CAA---A-----------C---ATAACACAC---TTAGT--AT-CTA--TA---TCTCTG---CGT---ATTA----CATCGGTGCCTTAGTCCAATACTAGTGTAGTGGTAGAGCATTCGCCATTAAATCTGGAGATCCTAGTACTATTCACCGAC-GGGAC-AA-TT---TTTTTTTAGTA-TT--------T-----TTTCTTCTATT-----TT-T----------TTTT----ATAAGAAAGAGACCATGGTATTTCGCGGAAATT-GAAAGCCGTCAAA----------------T---A
gi|12 : AA----------------T---ATAT----A---TATATATCAACACAT--GTAATGAAGTG---GTAATAAATTGGGATTGGTGGG--CCTTTTGGTGAAATTGG-CC---------------CAT------------------------------CAATA-TCAAAT----G--GACCAATATCACCA-AGAGG--CACACCAATCCCAGTTTATAACCTTTT-----A-AT----Aaa
gi|13 : gtaaAAAAATT-ATGTCGTAAACCCATTTCGTTTAC-TAAATCTTATTTTTGATTAAA-----------GGAAGT-AT--CAAT----------A-ACAAAAATA-----------C---ATTACACCC---TTAGT--AT-TTA--TATATTATCAT---CAT---ATTC----AATCGG---CATAATTTA-----------ATTGTAGAGCATTCGCCAGTAAATCTTGAGATCCGAGGTCTATTTTCTGAC-AGGAC-AA-atcaaaaaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatttactcagttattcagttattcattgattaatcgatctatctattt
gi|13 : aTAAAAAAGAGACTATAGTATATCAAGAAAATT-CAAAGTCATCAAA----------------T---ACAC----A---TATGTAGGTATAAAT--Gttgctagctaaaaaagagactatagtatatcaagaaaattcaaagtcatcaaatacacatatgtaggtataaatg
gi|14 : aaaaaattatgtcgtaaacccatttcgtttactaaatcttatttttgattaaaggaagtatcaataacaaaaatacattacacccttagtatttatatattatcatcatattcaatcggcataatttaattgtagagcattcgccagtaaatcttgagatccgaggtctattttctgacaggacaattgctagc---TTTTTGTAGC---C--------T-----TTTTTTCTATT----GTT-AA-CTCT--CCTTTT--------AAAAGAGGTCATAGTATATCGCGGAAATT-CAAAGTCGTTAAAACCACATATTTTTTTTT---ATAA----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTAATATTGG-CCC--------TTCCA-CATTG-----T-------------------------------AACACCAA--GGCCAATATGACCA-ACATG--CACTCGTCTTGCATACAATAACC-TCT-----A-A
gi|15 : acaAAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTGATACTATTGTTGACTAAA-----------GGAAGT-AT--CAATA---------A-A-AAA---A-----------C---ATAACACAC---TTAGT--AT-TTA--TA---TCTCAT---CGT---ACTC----AATCGGCACCGTAatgtcggcattac
gi|15 : ATTCCCCGAC-AGGAC-AG-AT---TTTTTGTAGTATTTCTTTTCTAT-----TTTTTTATATT----GTT-TA-caattccccgacaggacagattttttgtagtatttcttttctatttttttatattgtttannnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaaaattatgttgtaaacccgtttcgtttatttgatactattgttgactaaaggaagtatcaataaaaaaacataacacacttagtatttatatctcatcgtactcaatcggcaccgtacaT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGCTTAAA-----------GGAAGT-AT--AAAC------------A-AAA---T-----------C---ATAACATGC---TTAGT--AT-TTA--TA---TGTCAT---AGT---AATC----AATTGGCGCCGTAGTCnnnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaAGAA---GTTATTGTATGGTAGAAGTGTGTGCATGTTTGTCATATTGG-CCC---TAGTGTTCCA-TATTG-----T-----------------CG--AC--TA-CGG--CGCCAATTGATTACTATGACgacaatatggaacactagggccaatatgacaaacatgcacacacttctaccatacaataacttctaa
gi|16 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatCAATA-TGGAACACTAG--GGCCAATATGACAA-ACATGCACACACTTCTACCATACAATAACT-TCT-----A-Aaa
gi|17 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatgtcatagtaatcaattggcgccgtagtcgaTGTTATAAACCCGTTTCGTTTAA-TAAATGTTATT-TCGACTAAACATAGCTAAAAGGAGGTCAT--TAATTTAACATGACA-A-AAA---A---------------ATAACACGCAAAGTACT--AT-TAA--TA---TCCCAA---TGT---TATG----AATCGACGTCGTAGTCTA-----------GTG
gi|18 : -TTCCA-CGTTGGCTCTC-----------------GGGATTAATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--AACACCTCTACCATACAATAACC-TCT-----ttttgtacaatatgg
gi|19 : gaagtatatatttgtttaaatgttttgaagcaataagcaacgttaAGAGACCACAAC---TCATGGAAA---CATAATTTTCGAA----------------CTTGACCT----G---CATTT---TATAAATCAGTAGTA----GTCTGTTATTGTTTGGTAGAGGTGTG--CCTGTTGGTCATATTGG-ACC---TGGga
gi|2 : cggggAAAAA---ATGTTGTAAACCCATTTCACTTAT-TTAATGTTATTGTTGATCAAA-----------G----T-AT--CAAT----------A-A-AAA---------------C---ATAACACTC---TTAGT--AT-TCA--TA---TTTCAA---CCTCCTATGC----AATTGACGTCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGAAAATCTGGAGGTCCGAGTACAATTTCCCGAT-AGGTC-AA-ATATGTTTTTGTATTTTTT--------T-----CTTTTTCTTTTTCTAGTTATAACTCCTTCCTTTTA--AATAAAAAAAAGATCATAGTATATCAAAGATATTTCAAAGTCGTCAAA----------------T---ACAC----G---TATATAGGAATCAAT--ATAAGAAAAAG---GTTATTGTTTGGTAGAGGTGTG--CCTGTTGGTCATTTTGG-CCC---TGA---TCTA-CATCG-----G-----------------GG--TCAATA-TTCAACAACAG--GGCCACTATGACTA-ACAGG--CACTCCTCTACCATACAATAAgtcgactttat
gi|20 : CAAA----------------T---A-A-----A---TCTCTAGTTACACAT--GTAATAAACAG---GTTATTGACTGGGAAAGGTGTG--TCTCTTGAT
gi|21 : gcttta---GTTACAGTATCGTAGATGTGTG--A-TGTTGGTCATATTCG-CCC---TGGTGTTCCA-TAT-------C-----------------GG--TC------------CGAG--GGC---TAT---------AG--CAAACCTCTACCATACAATAACC-TCT-----A-AT----gcttttagtccacatcaatatcagaagaacccctatcccagttaatcaacttctt
gi|22 : AGTTTA-----------GTGGTAGAGCATCCGACTGCAGATCCAGAGGTCCcat
gi|23 : AATA-TGGAACACCAG--G-CCAATATGACCA-ACACG--CACACCTCTACCATACAATAACC-TCT-----ccggttcaaaacccgagtgttccctaatattttgttattatttcgtgataaaggaaactata
gi|24 : tTA-TGGAACACTAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCC-----A-
gi|27 : GCCAATATGACCA-CCATG--CACACTTCTACTATACAATAACC-TCT-----A-A
gi|28 : AAAAATT-ATGTTGTAAACCCGTTTCGTT
gi|3 : aAGAGGTGTG--CATGTTGGTCATATTGG-TCC---TGGT-GTTCATCTTTG-----T-----------------TG--CACATG-CGGAAGATCAG--GACAAATATGACCA-ACACG--AATACCTCTGCCATACTGCAACC-TTTTTGTTACATTTAGACATATATGCGTAA-----------TT--AACGATTTTGAATTTCCATGGTATTTCTTTTTAAATATTAGGCGTT-TGTAGTTTATACTGCGGTGCGTTAAATTTA--TTTCAA------TGATGCCACATGATTTGGTTTAAAAATC--TAAC----TTT---AATTCCCTTTTGC-TTAT
gi|4 : AAAA---ATGTCGTAAACCCATTTCGCTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACTC---AAAGT--TT-TTG--TA---TCTCATACTCAC---ATTC----AATCGGTGCCGTAGTCCA-----------GTGGTAGAGCATCCGCCTATAAATCTGGAGATCCTAGTTCTATTCCCCGAC-AGGAC-AATTT---TTTTTGTAGTATTT---------------------TATT----GTT-AA-TTTTTTTCTGTTG--AATAAAAAAGAAACCATAGCATATCACGGAAATT-CGAAGTCATTAAA----------------TAA-ACAC----AATGTATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGATACAGGTGTG--CCTGTTGATCATATAG--------TG---TTCCG-CAC------------------------------------TGGAACACCAG--GGCCAATATGACCA-ACAAG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ttaacagcatcatggtaagtcttttatgttttcttaactgtattcataagcataattgatgacataaaatataaattctgtttgacaataattgtgttgtccaggtatatgtctgaaatacttttgtacattttttaaaatattgataattga
gi|5 : T-ATGTTGTAAACCCATTTTGTTAAT-TCATTGTTATTGTTAATTAAA-----------GGAAGT-AT--CAA------------------------------------------ACGC---TTGGT--AG-TTA--TA---TCTCAA---CGT---ATTG----AACTGGCGCTGAAGTCCA-----------GTGGTAAAACATTCGCCTGTAAATCTGTAGGTCCTATTTCTATTCCCCGAC-CTAAC-AT-AT---TTTTTGTCATATTT--------T------TTTTTCTGTT----GTT-TA-CACTTTCCTTTTA--AATAAAAAAGAGACCAAAGTATATCACGGAAATT-CAAAGCCATCAAA----------------A---ATAC----A---TATATAGGTATAAAT--GTAATAAAAAA---GTCATAGTATGGTAGTGGTGTG--CCTCTTGGTCATATTGG-CCCGCATGGT-CTTC--CAT-------------------------------AATA-TGGAACACCAG--GGCCAATATGACCA-AGAGG------CCTCTACCATACAATAACC-TCT-----A-A
gi|6 : AATT-G-GTTGTAAATCCATTTCGTTTAT-TAATTGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------C-A-AAA---A-----------C---ATAACACTG---TTAGT--AT-TTA--TA---TCTCAT---CGT---ATTC----AATCGGCGCCGTAGGCGA-----------GTGGTAGAGCAAACGCCTGTAAATCTCGAGATTCGAGTTAAATTCCCCGAC-AGGACAAA-AT---GTTTTGTAGTCATT--------T-----TTTTTTCTCTT------------TTTTTTCTATTGTTAATAAAAA----ATCATAGTATATCACGAACATT-CAAAGTCGTTAAA----------------T---ACAC----A---CATATATATATAAAT--GTAAAAGAAAG---ATTATGGTATGGTAGAGATGTG--CCTGTTGGTCATATTGG-CCC---TGGTCTTCTA-CATTT-----T-----------------A----CAGTA-TGGAACACCTG--GCCCAATATAACCATACA
gi|7 : AAAATT-ATGCTGTAAACCCGTTTCGTTTATCTTAATGCTATTGTTGATTACA-----------GGAAGT-AT--CAAT----------A-G-AAA---ATA---------C---ATAACACCC---TTAAT--AT-GTA--TG---TCTCGA---TTT---ATTTTTTAAATCGGCGCCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAATTCTATTCCCTGAC-ACGAC-AA-TT---TTTTTGTAGTATTT--------T-----TTTT----ATT----GTT-TA-CTCTTTCTTTTTG--AATAAAATAGAGACAATAGTATATAACAGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAAT-AAAAG---GTTATAGTATGGTAGAGGTGTA--CCTGTTGGTCATATCGG-T------------------------------------------------CCAATA-TGGAACACCAG--GGACAATATGACCA-ACAGG--ataatctct
gi|8 : -ATGT-ATAAACCCATCTCGTTTAT-TTAACGTTAGTGTTGATTAAA-----------A-AAGT-AT------------------A-AAA---A-----------CCCCATAACACTA---TTAGT--AT-TTA--TA---TCTCATGATTGT---TTTC----A-TCAGCGCCGTAGTCTA-----------GTTGTATAGCATAAGCCTGTAAATCTTGAGATCCGAGTTCTATTCCCCGTC-AGGAT-A-----------------ATTT--------T-----TATGTAGTAAT----ATT-TA----------------AATAAAAAAAC--CCATAGTATTTCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTGTAAAT--GTAATAACAAG---GTTATAGTATGGTAGAGATGTG--CCTGTTGGTCATATTGG-CCC---TGGTCTTCCA-CAT-------T-----------------GG--CT----------CTC-----GGCCAATTTGACCA-ACAGG--CA
gi|9 : AAAAATT-ATGTTGTTAGCCCATTTCGTTTAG-TTAATGTTA
gi|9 : aCGT---TTAGTTAATGTTAGTTA---TCTCAT---CAT---ATTC----AACTGGCGCTGTAGTCCA-----------GTGGTAGAGCATTTGCCTGTAAAACTGGAGATCCGAGTTCTATTCCCCGAC-AGAAT-AA-AT---TATTTGTAGTA--T--------T-----TTTCTACTATT----GAT-CG-CTCTTTCCTTTTG--AATGAAAAAGAGACCATAGTATATCAGGGAAATT-CAAAGTTGTCAAA----------------T---ACACACATA---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATA------------------------------------------------------CCAACATTGGAACACTAG--GGCCAATATGACCA-ATAGG--CACACCTCTACCATACAAgttatctcatcatattcaactggcgctgtagtccagtggtagagcatttgcctgtaaaactggagatccgagttctattccccgacagaataaattatttgtagtatttttctactattgatcgctctttccttttgaatgaaaaagagaccatagtatatcagggaaattcaaagttgtcaaatacacacatatatataggtataaatgtaataaaaaggttatagtatggtagaggtgtgcctgttggtcataccaacattggaacactagggccaatatgaccaataggcacacctctaccatacaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CTTTGCTAATTTAAAATTCCAGAAACACATGTAATAAACAGGTTTTTAACTGGGAGAG
Unaligned ( gi|26 ): TATTGAACAGACTGTTATCAACATGTAAAGTCAAGCGGGGATATTAT
Alignments
lowQualScore : 11111111111 111111111111 2222222222222222222 1111 11111111111 11111111111111 111 11111111111111111111 8888888888888888888888888888888888888888888888888 1111 44444444444 11 55555555555555 2222 1 11 2222 222 11 333333 222 11 2222 222 1
lowQualScore : 2 2 44444444444 3 44 999999999999 3 4444444444444444444 3 555 33 2 33 555 1111 555 6666 44444444444 3 3 777777 3 55555555555555 7777 8888888888 111 3 99999999999999999999 66666666 33 444 33 2 4444444444444444444444444444444444444444444444444 2 33 2 33 3 88888 4 7777 1 1 2 33333333333 88 1 00000000000000 1 1 3333 5 88 3333 22 111 88 000000 2 1 111 88 4444 111 2 5
lowQualScore : . . ........... . .. ............ . ................... . ... .. . .. ... .... ... .... ........... . . ...... . .............. .... .......... ... . .................... ........ .. ... .. . ................................................. . .. . .. . ..... . .... . . . ........... .. . .............. . . .... . .. .... .. ... .. ...... . . ... .. .... ... . .
lowQualScore : 9 9 66666666666 1 22 999999999999 1 0000000000000000000 0 000 99 9 99 000 0000 000 1111 66666666666 3 3 111111 3 55555555555555 1111 8888888888 555 1 77777777777777777777 11111111 99 777 77 9 4444444444444444444444444444444444444444444444444 4 22 4 44 3 33333 0 0000 0 0 5 55555555555 00 0 00000000000000 0 0 0000 0 00 0000 00 555 00 000000 5 0 555 00 0000 000 5 5
consensus : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCC---TGGT-TTCCA-CATTG-----T-----------------GG--CCAATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
Reference ( family-1276 ) : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCC---TGGT-TTCCA-CATTG-----T-----------------GG--CCAATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
gi|1 : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------AGA-AAA---A-----------C---ATAACACGC---TTGGT--AT-TTA--TA---TCTCAA---CAT---ATTG----AATCAATGCCATAGTTCA-----------GTTGTAGAGCATTGGCCCGTAAATCTGTAGGTCTGAGTTGTATTCCCCGAC-AGCAC-AA-AT---TTTTTGTCGTATTT--------T-----TTTTTTCTGTT----GTT-TA-CTCTTGCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGCCATCAAA----------------T---ATAC----T---TATATAGGTATAAAT--GTAATAAAAGG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCAAATTGGCCCC---TGGTCTTCCA-CATTGGACC-TCAGGCTAAAGCCATTGGGG--CCAATA-TGGAACACCAG--AGCCAATATGACCA-ACAGG--CACATGTCTACCATACAATAACC-TCT-----A-AT----AAAAATATGTCTGACACTACTCTTTTTCAAATGACATTGAATG-------------TTTACATGTATT----GTTGTGTA--TTATA----GGTCAGTTA---TTAACTTTCAATAAACTTGATGTGATTTGATTTGATTT---GATCCATAACAGAATTTACAAATTTGTTCTTGCATTAT
gi|10 : AAATTGATGTTGTAAACCCGTTTCGTTTAT-TTAA-GTTAGTGTCGATTAAA-----------GGAAGT-TC--CAAT----------A-A-AAA---AAAAGCCAAATAC---ATAACACGC---TTAGT--AT-TTA--TG---TTGCGT---CGT---AATC----AATCAGCGACGTAGTTAA-----------GTGGTAGTGCATTCGCCTGTTAATCTGAAGATAAGAGATCTATT-CCCGACAAGAAC-AA-A-----ATTTGTAGCATTT--------TTTCTCTTTTTTCTA-T----GTT-AA-CT--------------------------CCATTGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACGC----A---TATATGAACATAAAT--GTAATAAAAAG---GTTACAGTATGGTAAAgtctgaaattatgaggactttat
gi|11 : AAAAAT--ATGTTGTTAACCCGTTTCGTTTAT-ATAATGTTATTGTTGATTAAA-----------GTAAGT-ATACCAAT----------A-A-CAA---A-----------C---ATAACACAC---TTAGT--AT-CTA--TA---TCTCTG---CGT---ATTA----CATCGGTGCCTTAGTCCAATACTAGTGTAGTGGTAGAGCATTCGCCATTAAATCTGGAGATCCTAGTACTATTCACCGAC-GGGAC-AA-TT---TTTTTTTAGTA-TT--------T-----TTTCTTCTATT-----TT-T----------TTTT----ATAAGAAAGAGACCATGGTATTTCGCGGAAATT-GAAAGCCGTCAAA----------------T---A
gi|12 : AA----------------T---ATAT----A---TATATATCAACACAT--GTAATGAAGTG---GTAATAAATTGGGATTGGTGGG--CCTTTTGGTGAAATTGG-CC---------------CAT------------------------------CAATA-TCAAAT----G--GACCAATATCACCA-AGAGG--CACACCAATCCCAGTTTATAACCTTTT-----A-AT----Aaa
gi|13 : gtaaAAAAATT-ATGTCGTAAACCCATTTCGTTTAC-TAAATCTTATTTTTGATTAAA-----------GGAAGT-AT--CAAT----------A-ACAAAAATA-----------C---ATTACACCC---TTAGT--AT-TTA--TATATTATCAT---CAT---ATTC----AATCGG---CATAATTTA-----------ATTGTAGAGCATTCGCCAGTAAATCTTGAGATCCGAGGTCTATTTTCTGAC-AGGAC-AA-atcaaaaaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatttactcagttattcagttattcattgattaatcgatctatctattt
gi|13 : aTAAAAAAGAGACTATAGTATATCAAGAAAATT-CAAAGTCATCAAA----------------T---ACAC----A---TATGTAGGTATAAAT--Gttgctagctaaaaaagagactatagtatatcaagaaaattcaaagtcatcaaatacacatatgtaggtataaatg
gi|14 : aaaaaattatgtcgtaaacccatttcgtttactaaatcttatttttgattaaaggaagtatcaataacaaaaatacattacacccttagtatttatatattatcatcatattcaatcggcataatttaattgtagagcattcgccagtaaatcttgagatccgaggtctattttctgacaggacaattgctagc---TTTTTGTAGC---C--------T-----TTTTTTCTATT----GTT-AA-CTCT--CCTTTT--------AAAAGAGGTCATAGTATATCGCGGAAATT-CAAAGTCGTTAAAACCACATATTTTTTTTT---ATAA----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTAATATTGG-CCC--------TTCCA-CATTG-----T-------------------------------AACACCAA--GGCCAATATGACCA-ACATG--CACTCGTCTTGCATACAATAACC-TCT-----A-A
gi|15 : acaAAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTGATACTATTGTTGACTAAA-----------GGAAGT-AT--CAATA---------A-A-AAA---A-----------C---ATAACACAC---TTAGT--AT-TTA--TA---TCTCAT---CGT---ACTC----AATCGGCACCGTAatgtcggcattac
gi|15 : ATTCCCCGAC-AGGAC-AG-AT---TTTTTGTAGTATTTCTTTTCTAT-----TTTTTTATATT----GTT-TA-caattccccgacaggacagattttttgtagtatttcttttctatttttttatattgtttannnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaaaattatgttgtaaacccgtttcgtttatttgatactattgttgactaaaggaagtatcaataaaaaaacataacacacttagtatttatatctcatcgtactcaatcggcaccgtacaT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGCTTAAA-----------GGAAGT-AT--AAAC------------A-AAA---T-----------C---ATAACATGC---TTAGT--AT-TTA--TA---TGTCAT---AGT---AATC----AATTGGCGCCGTAGTCnnnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaAGAA---GTTATTGTATGGTAGAAGTGTGTGCATGTTTGTCATATTGG-CCC---TAGTGTTCCA-TATTG-----T-----------------CG--AC--TA-CGG--CGCCAATTGATTACTATGACgacaatatggaacactagggccaatatgacaaacatgcacacacttctaccatacaataacttctaa
gi|16 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatCAATA-TGGAACACTAG--GGCCAATATGACAA-ACATGCACACACTTCTACCATACAATAACT-TCT-----A-Aaa
gi|17 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatgtcatagtaatcaattggcgccgtagtcgaTGTTATAAACCCGTTTCGTTTAA-TAAATGTTATT-TCGACTAAACATAGCTAAAAGGAGGTCAT--TAATTTAACATGACA-A-AAA---A---------------ATAACACGCAAAGTACT--AT-TAA--TA---TCCCAA---TGT---TATG----AATCGACGTCGTAGTCTA-----------GTG
gi|18 : -TTCCA-CGTTGGCTCTC-----------------GGGATTAATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--AACACCTCTACCATACAATAACC-TCT-----ttttgtacaatatgg
gi|19 : gaagtatatatttgtttaaatgttttgaagcaataagcaacgttaAGAGACCACAAC---TCATGGAAA---CATAATTTTCGAA----------------CTTGACCT----G---CATTT---TATAAATCAGTAGTA----GTCTGTTATTGTTTGGTAGAGGTGTG--CCTGTTGGTCATATTGG-ACC---TGGga
gi|2 : cggggAAAAA---ATGTTGTAAACCCATTTCACTTAT-TTAATGTTATTGTTGATCAAA-----------G----T-AT--CAAT----------A-A-AAA---------------C---ATAACACTC---TTAGT--AT-TCA--TA---TTTCAA---CCTCCTATGC----AATTGACGTCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGAAAATCTGGAGGTCCGAGTACAATTTCCCGAT-AGGTC-AA-ATATGTTTTTGTATTTTTT--------T-----CTTTTTCTTTTTCTAGTTATAACTCCTTCCTTTTA--AATAAAAAAAAGATCATAGTATATCAAAGATATTTCAAAGTCGTCAAA----------------T---ACAC----G---TATATAGGAATCAAT--ATAAGAAAAAG---GTTATTGTTTGGTAGAGGTGTG--CCTGTTGGTCATTTTGG-CCC---TGA---TCTA-CATCG-----G-----------------GG--TCAATA-TTCAACAACAG--GGCCACTATGACTA-ACAGG--CACTCCTCTACCATACAATAAgtcgactttat
gi|20 : CAAA----------------T---A-A-----A---TCTCTAGTTACACAT--GTAATAAACAG---GTTATTGACTGGGAAAGGTGTG--TCTCTTGAT
gi|21 : gcttta---GTTACAGTATCGTAGATGTGTG--A-TGTTGGTCATATTCG-CCC---TGGTGTTCCA-TAT-------C-----------------GG--TC------------CGAG--GGC---TAT---------AG--CAAACCTCTACCATACAATAACC-TCT-----A-AT----gcttttagtccacatcaatatcagaagaacccctatcccagttaatcaacttctt
gi|22 : AGTTTA-----------GTGGTAGAGCATCCGACTGCAGATCCAGAGGTCCcat
gi|23 : AATA-TGGAACACCAG--G-CCAATATGACCA-ACACG--CACACCTCTACCATACAATAACC-TCT-----ccggttcaaaacccgagtgttccctaatattttgttattatttcgtgataaaggaaactata
gi|24 : tTA-TGGAACACTAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCC-----A-
gi|27 : GCCAATATGACCA-CCATG--CACACTTCTACTATACAATAACC-TCT-----A-A
gi|28 : AAAAATT-ATGTTGTAAACCCGTTTCGTT
gi|3 : aAGAGGTGTG--CATGTTGGTCATATTGG-TCC---TGGT-GTTCATCTTTG-----T-----------------TG--CACATG-CGGAAGATCAG--GACAAATATGACCA-ACACG--AATACCTCTGCCATACTGCAACC-TTTTTGTTACATTTAGACATATATGCGTAA-----------TT--AACGATTTTGAATTTCCATGGTATTTCTTTTTAAATATTAGGCGTT-TGTAGTTTATACTGCGGTGCGTTAAATTTA--TTTCAA------TGATGCCACATGATTTGGTTTAAAAATC--TAAC----TTT---AATTCCCTTTTGC-TTAT
gi|4 : AAAA---ATGTCGTAAACCCATTTCGCTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACTC---AAAGT--TT-TTG--TA---TCTCATACTCAC---ATTC----AATCGGTGCCGTAGTCCA-----------GTGGTAGAGCATCCGCCTATAAATCTGGAGATCCTAGTTCTATTCCCCGAC-AGGAC-AATTT---TTTTTGTAGTATTT---------------------TATT----GTT-AA-TTTTTTTCTGTTG--AATAAAAAAGAAACCATAGCATATCACGGAAATT-CGAAGTCATTAAA----------------TAA-ACAC----AATGTATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGATACAGGTGTG--CCTGTTGATCATATAG--------TG---TTCCG-CAC------------------------------------TGGAACACCAG--GGCCAATATGACCA-ACAAG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ttaacagcatcatggtaagtcttttatgttttcttaactgtattcataagcataattgatgacataaaatataaattctgtttgacaataattgtgttgtccaggtatatgtctgaaatacttttgtacattttttaaaatattgataattga
gi|5 : T-ATGTTGTAAACCCATTTTGTTAAT-TCATTGTTATTGTTAATTAAA-----------GGAAGT-AT--CAA------------------------------------------ACGC---TTGGT--AG-TTA--TA---TCTCAA---CGT---ATTG----AACTGGCGCTGAAGTCCA-----------GTGGTAAAACATTCGCCTGTAAATCTGTAGGTCCTATTTCTATTCCCCGAC-CTAAC-AT-AT---TTTTTGTCATATTT--------T------TTTTTCTGTT----GTT-TA-CACTTTCCTTTTA--AATAAAAAAGAGACCAAAGTATATCACGGAAATT-CAAAGCCATCAAA----------------A---ATAC----A---TATATAGGTATAAAT--GTAATAAAAAA---GTCATAGTATGGTAGTGGTGTG--CCTCTTGGTCATATTGG-CCCGCATGGT-CTTC--CAT-------------------------------AATA-TGGAACACCAG--GGCCAATATGACCA-AGAGG------CCTCTACCATACAATAACC-TCT-----A-A
gi|6 : AATT-G-GTTGTAAATCCATTTCGTTTAT-TAATTGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------C-A-AAA---A-----------C---ATAACACTG---TTAGT--AT-TTA--TA---TCTCAT---CGT---ATTC----AATCGGCGCCGTAGGCGA-----------GTGGTAGAGCAAACGCCTGTAAATCTCGAGATTCGAGTTAAATTCCCCGAC-AGGACAAA-AT---GTTTTGTAGTCATT--------T-----TTTTTTCTCTT------------TTTTTTCTATTGTTAATAAAAA----ATCATAGTATATCACGAACATT-CAAAGTCGTTAAA----------------T---ACAC----A---CATATATATATAAAT--GTAAAAGAAAG---ATTATGGTATGGTAGAGATGTG--CCTGTTGGTCATATTGG-CCC---TGGTCTTCTA-CATTT-----T-----------------A----CAGTA-TGGAACACCTG--GCCCAATATAACCATACA
gi|7 : AAAATT-ATGCTGTAAACCCGTTTCGTTTATCTTAATGCTATTGTTGATTACA-----------GGAAGT-AT--CAAT----------A-G-AAA---ATA---------C---ATAACACCC---TTAAT--AT-GTA--TG---TCTCGA---TTT---ATTTTTTAAATCGGCGCCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAATTCTATTCCCTGAC-ACGAC-AA-TT---TTTTTGTAGTATTT--------T-----TTTT----ATT----GTT-TA-CTCTTTCTTTTTG--AATAAAATAGAGACAATAGTATATAACAGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAAT-AAAAG---GTTATAGTATGGTAGAGGTGTA--CCTGTTGGTCATATCGG-T------------------------------------------------CCAATA-TGGAACACCAG--GGACAATATGACCA-ACAGG--ataatctct
gi|8 : -ATGT-ATAAACCCATCTCGTTTAT-TTAACGTTAGTGTTGATTAAA-----------A-AAGT-AT------------------A-AAA---A-----------CCCCATAACACTA---TTAGT--AT-TTA--TA---TCTCATGATTGT---TTTC----A-TCAGCGCCGTAGTCTA-----------GTTGTATAGCATAAGCCTGTAAATCTTGAGATCCGAGTTCTATTCCCCGTC-AGGAT-A-----------------ATTT--------T-----TATGTAGTAAT----ATT-TA----------------AATAAAAAAAC--CCATAGTATTTCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTGTAAAT--GTAATAACAAG---GTTATAGTATGGTAGAGATGTG--CCTGTTGGTCATATTGG-CCC---TGGTCTTCCA-CAT-------T-----------------GG--CT----------CTC-----GGCCAATTTGACCA-ACAGG--CA
gi|9 : AAAAATT-ATGTTGTTAGCCCATTTCGTTTAG-TTAATGTTA
gi|9 : aCGT---TTAGTTAATGTTAGTTA---TCTCAT---CAT---ATTC----AACTGGCGCTGTAGTCCA-----------GTGGTAGAGCATTTGCCTGTAAAACTGGAGATCCGAGTTCTATTCCCCGAC-AGAAT-AA-AT---TATTTGTAGTA--T--------T-----TTTCTACTATT----GAT-CG-CTCTTTCCTTTTG--AATGAAAAAGAGACCATAGTATATCAGGGAAATT-CAAAGTTGTCAAA----------------T---ACACACATA---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATA------------------------------------------------------CCAACATTGGAACACTAG--GGCCAATATGACCA-ATAGG--CACACCTCTACCATACAAgttatctcatcatattcaactggcgctgtagtccagtggtagagcatttgcctgtaaaactggagatccgagttctattccccgacagaataaattatttgtagtatttttctactattgatcgctctttccttttgaatgaaaaagagaccatagtatatcagggaaattcaaagttgtcaaatacacacatatatataggtataaatgtaataaaaaggttatagtatggtagaggtgtgcctgttggtcataccaacattggaacactagggccaatatgaccaataggcacacctctaccatacaa
blockSeqs : G C CATAGCTAAAA C AC TTAACATGACA C AAAAGCCAAATAC G AAA TA G GT TAT TACT CCT TTTA ATACTAGTGTA A A ATATG T CTTTTCTAT TCTA ATAACTCCTT GTT T ACCACATATTTTTTTTT ACATA CA TCT TG . TGGTGTTCATCTTTGTTGCAC T TT T CA T TTGTT C TTAG C T G . . T TTCCATGGTATTTC T A AGGC . GT CTGC GC AAT . . C A AAA . . . C .
blockSeqs : . . . . . AA . AATAC A . . . . . TGAT . . . . . TTT T TTTCTC . AATTTTTT A . CTTG AATG . . . . TAGTGTTCCATATTGTCGAC . . . . . . . .
blockSeqs : . . . . . A . ACCCC C . . . . . T . . . . . TT T T . TACACTTT G . TAA A . . . . TGGTCTTCTACATTTTACA . . . . . . . .
blockSeqs : . . . . . A . ATAC A . . . . . G . . . . . AT T T . TACTCTTT A . T A . . . . TGATCTACATCGGGGTCA . . . . . . . .
blockSeqs : . . . . . A . AC G . . . . . T . . . . . AT T T . CGCTCTTT G . T A . . . . TGGTGTTCCATATCGGTC . . . . . . .
blockSeqs : . . . . . A . AC G . . . . . T . . . . . AT A T . AACTCT G . T A . . . . TGGTCTTCCACATTGGCT . . . . . . .
blockSeqs : . . . . . A . TC T . . . . . T . . . . . TT T T . TTTTT . . T G . . . . GCATGGTCTTCCATA . . . . . . .
blockSeqs : . . . . . C . AC T . . . . . A . . . . . AT T T . AACT . . T G . . . . TTCCACATTGT . . . . . . .
blockSeqs : . . . . . A . AC G . . . . . A . . . . . A . T . TA . . T A . . . . TGTTCCGCAC . . . . . . .
blockSeqs : . . . . . . . A T . . . . . A . . . . . . . T . T . . A A . . . . CATCA . . . . . .
blockSeqs : . . . . . . . C C . . . . . T . . . . . . . . . T A . . . . CCA . . . . . .
blockSeqs : . . . . . . . . T . . . . . A . . . . T A . . . . CCA . . . .
blockSeqs : . . G . . . . . T . . T A . . . . . . . .
blockSeqs : T . . . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : A*********** TGGTTTCCACATCGCC*********************************
originalCons : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCC---TGGT-TTCCA-CATTG-----T-----------------GG--CCAATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
finalCons : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAATA-----------A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCCTGGTTTCCACATCGCC---------------------------------ATA-TGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CTTTGCTAATTTAAAATTCCAGAAACACATGTAATAAACAGGTTTTTAACTGGGAGAG
Unaligned ( gi|26 ): TATTGAACAGACTGTTATCAACATGTAAAGTCAAGCGGGGATATTAT
Alignments
lowQualScore : 11111111111 111111111111 2222222222222222222 1111 11111111111 11111111111111 111 11111111111111111111 8888888888888888888888888888888888888888888888888888888888 1111 44444444444 11 55555555555555 2222 1 11 2222 222 11 333333 222 11 2222 222 1
lowQualScore : 2 2 44444444444 3 44 999999999999 3 4444444444444444444 3 555 33 2 33 555 1111 555 6666 44444444444 3 3 777777 3 55555555555555 7777 8888888888 111 3 99999999999999999999 66666666 33 444 33 22 4444444444444444444444444444444444444444444444444444444444 33 2 33 3 88888 4 7777 1 1 2 33333333333 88 1 00000000000000 1 1 3333 5 88 3333 22 111 88 000000 2 1 111 88 4444 111 2 5
lowQualScore : . . ........... . .. ............ . ................... . ... .. . .. ... .... ... .... ........... . . ...... . .............. .... .......... ... . .................... ........ .. ... .. .. .......................................................... .. . .. . ..... . .... . . . ........... .. . .............. . . .... . .. .... .. ... .. ...... . . ... .. .... ... . .
lowQualScore : 9 9 66666666666 1 22 999999999999 1 0000000000000000000 0 000 99 9 99 000 0000 000 1111 66666666666 3 3 111111 3 55555555555555 1111 8888888888 555 1 77777777777777777777 11111111 99 777 77 99 4444444444444444444444444444444444444444444444444444444444 22 4 44 3 33333 0 0000 0 0 5 55555555555 00 0 00000000000000 0 0 0000 0 00 0000 00 555 00 000000 5 0 555 00 0000 000 5 5
consensus : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCC---TGGT-TTCC-AC----A--TCG----C-------------------------A--TATGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
Reference ( family-1276 ) : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACGC---TTAGT--AT-TTA--TA---TCTCAN---CGT---ATTC----AATCGGCGCCGTAGTCCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAGTTCTATTCCCCGAC-AGGAC-AA-AT---TTTTTGTAGTATTT--------T-----TTTTTTCTATT----GTT-TA-CTCTTTCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATATTGG-CCC---TGGT-TTCC-AC----A--TCG----C-C-----------------------A--TATGGAACACCAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ANANATATGCGTGACACTACTCTTTTTCAAACGACNTTGAATNTCCATGGTATTTCTTTNCANGTATTAGGCGTTGTGTAGTTTATACTGCGGTNNGTTAAATTTAACTTTCAATAAACTTGATGCGACNTGATTTGGTTTAAAGATCCATAACAGAATTTACAAATTCGCTCTTGCATTAT
gi|1 : AAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------AGA-AAA---A-----------C---ATAACACGC---TTGGT--AT-TTA--TA---TCTCAA---CAT---ATTG----AATCAATGCCATAGTTCA-----------GTTGTAGAGCATTGGCCCGTAAATCTGTAGGTCTGAGTTGTATTCCCCGAC-AGCAC-AA-AT---TTTTTGTCGTATTT--------T-----TTTTTTCTGTT----GTT-TA-CTCTTGCCTTTTG--AATAAAAAAGAGACCATAGTATATCACGGAAATT-CAAAGCCATCAAA----------------T---ATAC----T---TATATAGGTATAAAT--GTAATAAAAGG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCAAATTGGCCCC---TGGTCTTCC-AC----A--TTGGA--C-CTCAGGCTAAAGCCATTGGGGCCAA--TATGGAACACCAG--AGCCAATATGACCA-ACAGG--CACATGTCTACCATACAATAACC-TCT-----A-AT----AAAAATATGTCTGACACTACTCTTTTTCAAATGACATTGAATG-------------TTTACATGTATT----GTTGTGTA--TTATA----GGTCAGTTA---TTAACTTTCAATAAACTTGATGTGATTTGATTTGATTT---GATCCATAACAGAATTTACAAATTTGTTCTTGCATTAT
gi|10 : AAATTGATGTTGTAAACCCGTTTCGTTTAT-TTAA-GTTAGTGTCGATTAAA-----------GGAAGT-TC--CAAT----------A-A-AAA---AAAAGCCAAATAC---ATAACACGC---TTAGT--AT-TTA--TG---TTGCGT---CGT---AATC----AATCAGCGACGTAGTTAA-----------GTGGTAGTGCATTCGCCTGTTAATCTGAAGATAAGAGATCTATT-CCCGACAAGAAC-AA-A-----ATTTGTAGCATTT--------TTTCTCTTTTTTCTA-T----GTT-AA-CT--------------------------CCATTGTATATCACGGAAATT-CAAAGTCGTCAAA----------------T---ACGC----A---TATATGAACATAAAT--GTAATAAAAAG---GTTACAGTATGGTAAAgtctgaaattatgaggactttat
gi|11 : AAAAAT--ATGTTGTTAACCCGTTTCGTTTAT-ATAATGTTATTGTTGATTAAA-----------GTAAGT-ATACCAAT----------A-A-CAA---A-----------C---ATAACACAC---TTAGT--AT-CTA--TA---TCTCTG---CGT---ATTA----CATCGGTGCCTTAGTCCAATACTAGTGTAGTGGTAGAGCATTCGCCATTAAATCTGGAGATCCTAGTACTATTCACCGAC-GGGAC-AA-TT---TTTTTTTAGTA-TT--------T-----TTTCTTCTATT-----TT-T----------TTTT----ATAAGAAAGAGACCATGGTATTTCGCGGAAATT-GAAAGCCGTCAAA----------------T---A
gi|12 : AA----------------T---ATAT----A---TATATATCAACACAT--GTAATGAAGTG---GTAATAAATTGGGATTGGTGGG--CCTTTTGGTGAAATTGG-CC---------------C----A--TCA------------------------------A--TATCAAAT----G--GACCAATATCACCA-AGAGG--CACACCAATCCCAGTTTATAACCTTTT-----A-AT----Aaa
gi|13 : gtaaAAAAATT-ATGTCGTAAACCCATTTCGTTTAC-TAAATCTTATTTTTGATTAAA-----------GGAAGT-AT--CAAT----------A-ACAAAAATA-----------C---ATTACACCC---TTAGT--AT-TTA--TATATTATCAT---CAT---ATTC----AATCGG---CATAATTTA-----------ATTGTAGAGCATTCGCCAGTAAATCTTGAGATCCGAGGTCTATTTTCTGAC-AGGAC-AA-atcaaaaaaatcaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcatttactcagttattcagttattcattgattaatcgatctatctattt
gi|13 : aTAAAAAAGAGACTATAGTATATCAAGAAAATT-CAAAGTCATCAAA----------------T---ACAC----A---TATGTAGGTATAAAT--Gttgctagctaaaaaagagactatagtatatcaagaaaattcaaagtcatcaaatacacatatgtaggtataaatg
gi|14 : aaaaaattatgtcgtaaacccatttcgtttactaaatcttatttttgattaaaggaagtatcaataacaaaaatacattacacccttagtatttatatattatcatcatattcaatcggcataatttaattgtagagcattcgccagtaaatcttgagatccgaggtctattttctgacaggacaattgctagc---TTTTTGTAGC---C--------T-----TTTTTTCTATT----GTT-AA-CTCT--CCTTTT--------AAAAGAGGTCATAGTATATCGCGGAAATT-CAAAGTCGTTAAAACCACATATTTTTTTTT---ATAA----A---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTAATATTGG-CCC--------TTCC-AC----A--T-------------------------------------TGTAACACCAA--GGCCAATATGACCA-ACATG--CACTCGTCTTGCATACAATAACC-TCT-----A-A
gi|15 : acaAAAAATT-ATGTTGTAAACCCGTTTCGTTTAT-TTGATACTATTGTTGACTAAA-----------GGAAGT-AT--CAATA---------A-A-AAA---A-----------C---ATAACACAC---TTAGT--AT-TTA--TA---TCTCAT---CGT---ACTC----AATCGGCACCGTAatgtcggcattac
gi|15 : ATTCCCCGAC-AGGAC-AG-AT---TTTTTGTAGTATTTCTTTTCTAT-----TTTTTTATATT----GTT-TA-caattccccgacaggacagattttttgtagtatttcttttctatttttttatattgtttannnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaaaattatgttgtaaacccgtttcgtttatttgatactattgttgactaaaggaagtatcaataaaaaaacataacacacttagtatttatatctcatcgtactcaatcggcaccgtacaT-ATGTTGTAAACCCGTTTCGTTTAT-TTAATGTTATTGTTGCTTAAA-----------GGAAGT-AT--AAAC------------A-AAA---T-----------C---ATAACATGC---TTAGT--AT-TTA--TA---TGTCAT---AGT---AATC----AATTGGCGCCGTAGTCnnnnnnnnnnaaataacgtatccaaataacttcatgacctaagtacgttccaaataacgca
gi|16 : aaAGAA---GTTATTGTATGGTAGAAGTGTGTGCATGTTTGTCATATTGG-CCC---TAGTGTTCC-AT----A--TTG----T-C-----------------------GACTACGG--CGCCAATTGATTACTATGACgacaatatggaacactagggccaatatgacaaacatgcacacacttctaccatacaataacttctaa
gi|16 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatat-----------------------A--TATGGAACACTAG--GGCCAATATGACAA-ACATGCACACACTTCTACCATACAATAACT-TCT-----A-Aaa
gi|17 : aatatgttgtaaacccgtttcgtttatttaatgttattgttgcttaaaggaagtataaacaaaatcataacatgcttagtatttatatgtcatagtaatcaattggcgccgtagtcgacaTGTTATAAACCCGTTTCGTTTAA-TAAATGTTATT-TCGACTAAACATAGCTAAAAGGAGGTCAT--TAATTTAACATGACA-A-AAA---A---------------ATAACACGCAAAGTACT--AT-TAA--TA---TCCCAA---TGT---TATG----AATCGACGTCGTAGTCTA-----------GTG
gi|18 : -----------------------A--TATGGAACACCAG--GGCCAATATGACCA-ACAGG--AACACCTCTACCATACAATAACC-TCT-----ttttgtacaatatgg
gi|19 : gaagtatatatttgtttaaatgttttgaagcaataagcaacgttaAGAGACCACAAC---TCATGGAAA---CATAATTTTCGAA----------------CTTGACCT----G---CATTT---TATAAATCAGTAGTA----GTCTGTTATTGTTTGGTAGAGGTGTG--CCTGTTGGTCATATTGG-ACC---TGGtaatcccgagagccaacgtggaaga
gi|2 : cggggAAAAA---ATGTTGTAAACCCATTTCACTTAT-TTAATGTTATTGTTGATCAAA-----------G----T-AT--CAAT----------A-A-AAA---------------C---ATAACACTC---TTAGT--AT-TCA--TA---TTTCAA---CCTCCTATGC----AATTGACGTCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGAAAATCTGGAGGTCCGAGTACAATTTCCCGAT-AGGTC-AA-ATATGTTTTTGTATTTTTT--------T-----CTTTTTCTTTTTCTAGTTATAACTCCTTCCTTTTA--AATAAAAAAAAGATCATAGTATATCAAAGATATTTCAAAGTCGTCAAA----------------T---ACAC----G---TATATAGGAATCAAT--ATAAGAAAAAG---GTTATTGTTTGGTAGAGGTGTG--CCTGTTGGTCATTTTGG-CCC---TGA---TCT-AC----A--TCGGGGTC-A-----------------------A--TATTCAACAACAG--GGCCACTATGACTA-ACAGG--CACTCCTCTACCATACAATAAgtcgactttat
gi|20 : CAAA----------------T---A-A-----A---TCTCTAGTTACACAT--GTAATAAACAG---GTTATTGACTGGGAAAGGTGTG--TCTCTTGAT
gi|21 : gcttta---GTTACAGTATCGTAGATGTGTG--A-TGTTGGTCATATTCG-CCC---TGGTGTTCC-AT----A--TCGGT--C-C-----------------------G-------------AG--GGC---TAT---------AG--CAAACCTCTACCATACAATAACC-TCT-----A-AT----gcttttagtccacatcaatatcagaagaacccctatcccagttaatcaacttctt
gi|22 : AGTTTA-----------GTGGTAGAGCATCCGACTGCAGATCCAGAGGTCCcat
gi|23 : -----------------------A--TATGGAACACCAG--G-CCAATATGACCA-ACACG--CACACCTCTACCATACAATAACC-TCT-----ccggttcaaaacccgagtgttccctaatattttgttattatttcgtgataaaggaaactata
gi|24 : ta--TATGGAACACTAG--GGCCAATATGACCA-ACAGG--CACACCTCTACCATACAATAACC-TCC-----A-
gi|27 : GCCAATATGACCA-CCATG--CACACTTCTACTATACAATAACC-TCT-----A-A
gi|28 : AAAAATT-ATGTTGTAAACCCGTTTCGTT
gi|3 : aAGAGGTGTG--CATGTTGGTCATATTGG-TCC---TGGT-GTTC-ATCTTTG--TTG----CAC-----------------------A--TGCGGAAGATCAG--GACAAATATGACCA-ACACG--AATACCTCTGCCATACTGCAACC-TTTTTGTTACATTTAGACATATATGCGTAA-----------TT--AACGATTTTGAATTTCCATGGTATTTCTTTTTAAATATTAGGCGTT-TGTAGTTTATACTGCGGTGCGTTAAATTTA--TTTCAA------TGATGCCACATGATTTGGTTTAAAAATC--TAAC----TTT---AATTCCCTTTTGC-TTAT
gi|4 : AAAA---ATGTCGTAAACCCATTTCGCTTAT-TTAATGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------A-A-AAA---A-----------C---ATAACACTC---AAAGT--TT-TTG--TA---TCTCATACTCAC---ATTC----AATCGGTGCCGTAGTCCA-----------GTGGTAGAGCATCCGCCTATAAATCTGGAGATCCTAGTTCTATTCCCCGAC-AGGAC-AATTT---TTTTTGTAGTATTT---------------------TATT----GTT-AA-TTTTTTTCTGTTG--AATAAAAAAGAAACCATAGCATATCACGGAAATT-CGAAGTCATTAAA----------------TAA-ACAC----AATGTATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGATACAGGTGTG--CCTGTTGATCATATAG--------TG---TTCC-GC----A--C-------------------------------------TGGAACACCAG--GGCCAATATGACCA-ACAAG--CACACCTCTACCATACAATAACC-TCT-----A-AT----ttaacagcatcatggtaagtcttttatgttttcttaactgtattcataagcataattgatgacataaaatataaattctgtttgacaataattgtgttgtccaggtatatgtctgaaatacttttgtacattttttaaaatattgataattga
gi|5 : T-ATGTTGTAAACCCATTTTGTTAAT-TCATTGTTATTGTTAATTAAA-----------GGAAGT-AT--CAA------------------------------------------ACGC---TTGGT--AG-TTA--TA---TCTCAA---CGT---ATTG----AACTGGCGCTGAAGTCCA-----------GTGGTAAAACATTCGCCTGTAAATCTGTAGGTCCTATTTCTATTCCCCGAC-CTAAC-AT-AT---TTTTTGTCATATTT--------T------TTTTTCTGTT----GTT-TA-CACTTTCCTTTTA--AATAAAAAAGAGACCAAAGTATATCACGGAAATT-CAAAGCCATCAAA----------------A---ATAC----A---TATATAGGTATAAAT--GTAATAAAAAA---GTCATAGTATGGTAGTGGTGTG--CCTCTTGGTCATATTGG-CCCGCATGGTCTTCC-AT----A-----------------------------------A--TATGGAACACCAG--GGCCAATATGACCA-AGAGG------CCTCTACCATACAATAACC-TCT-----A-A
gi|6 : AATT-G-GTTGTAAATCCATTTCGTTTAT-TAATTGTTATTGTTGATTAAA-----------GGAAGT-AT--CAAT----------C-A-AAA---A-----------C---ATAACACTG---TTAGT--AT-TTA--TA---TCTCAT---CGT---ATTC----AATCGGCGCCGTAGGCGA-----------GTGGTAGAGCAAACGCCTGTAAATCTCGAGATTCGAGTTAAATTCCCCGAC-AGGACAAA-AT---GTTTTGTAGTCATT--------T-----TTTTTTCTCTT------------TTTTTTCTATTGTTAATAAAAA----ATCATAGTATATCACGAACATT-CAAAGTCGTTAAA----------------T---ACAC----A---CATATATATATAAAT--GTAAAAGAAAG---ATTATGGTATGGTAGAGATGTG--CCTGTTGGTCATATTGG-CCC---TGGTCTTCT-AC----ATTTTA----C-A-----------------------G--TATGGAACACCTG--GCCCAATATAACCATACA
gi|7 : AAAATT-ATGCTGTAAACCCGTTTCGTTTATCTTAATGCTATTGTTGATTACA-----------GGAAGT-AT--CAAT----------A-G-AAA---ATA---------C---ATAACACCC---TTAAT--AT-GTA--TG---TCTCGA---TTT---ATTTTTTAAATCGGCGCCGTAGTGCA-----------GTGGTAGAGCATTCGCCTGTAAATCTGGAGATCCGAATTCTATTCCCTGAC-ACGAC-AA-TT---TTTTTGTAGTATTT--------T-----TTTT----ATT----GTT-TA-CTCTTTCTTTTTG--AATAAAATAGAGACAATAGTATATAACAGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTATAAAT--GTAAT-AAAAG---GTTATAGTATGGTAGAGGTGTA--CCTGTTGGTCATATCGG-------------TCC-A-----------------------------------------A--TATGGAACACCAG--GGACAATATGACCA-ACAGG--ataatctct
gi|8 : -ATGT-ATAAACCCATCTCGTTTAT-TTAACGTTAGTGTTGATTAAA-----------A-AAGT-AT------------------A-AAA---A-----------CCCCATAACACTA---TTAGT--AT-TTA--TA---TCTCATGATTGT---TTTC----A-TCAGCGCCGTAGTCTA-----------GTTGTATAGCATAAGCCTGTAAATCTTGAGATCCGAGTTCTATTCCCCGTC-AGGAT-A-----------------ATTT--------T-----TATGTAGTAAT----ATT-TA----------------AATAAAAAAAC--CCATAGTATTTCACGGAAATT-CAAAGTCGTCAAA----------------T---ACAC----A---TATATAGGTGTAAAT--GTAATAACAAG---GTTATAGTATGGTAGAGATGTG--CCTGTTGGTCATATTGG-CCC---TGGTCTTCC-AC----A--T-------------------------------------TGGCTCTC-----GGCCAATTTGACCA-ACAGG--CA
gi|9 : AAAAATT-ATGTTGTTAGCCCATTTCGTTTAG-TTAATGTTA
gi|9 : aCGT---TTAGTTAATGTTAGTTA---TCTCAT---CAT---ATTC----AACTGGCGCTGTAGTCCA-----------GTGGTAGAGCATTTGCCTGTAAAACTGGAGATCCGAGTTCTATTCCCCGAC-AGAAT-AA-AT---TATTTGTAGTA--T--------T-----TTTCTACTATT----GAT-CG-CTCTTTCCTTTTG--AATGAAAAAGAGACCATAGTATATCAGGGAAATT-CAAAGTTGTCAAA----------------T---ACACACATA---TATATAGGTATAAAT--GTAATAAAAAG---GTTATAGTATGGTAGAGGTGTG--CCTGTTGGTCATA------------------CCAAC----A--T-------------------------------------TGGAACACTAG--GGCCAATATGACCA-ATAGG--CACACCTCTACCATACAAgttatctcatcatattcaactggcgctgtagtccagtggtagagcatttgcctgtaaaactggagatccgagttctattccccgacagaataaattatttgtagtatttttctactattgatcgctctttccttttgaatgaaaaagagaccatagtatatcagggaaattcaaagttgtcaaatacacacatatatataggtataaatgtaataaaaaggttatagtatggtagaggtgtgcctgttggtcataccaacattggaacactagggccaatatgaccaataggcacacctctaccatacaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|25 ): CTTTGCTAATTTAAAATTCCAGAAACACATGTAATAAACAGGTTTTTAACTGGGAGAG
Unaligned ( gi|26 ): TATTGAACAGACTGTTATCAACATGTAAAGTCAAGCGGGGATATTAT