lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 11111 111111 2222 33333333333 111111 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 1111 1111111111111 2222 11 333333 11 22
lowQualScore : 0 2 2 66666 2 2 333333 5 2 1111 66 777 55555555555 999999 3 3 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 111 77777777 4 3 1111 3 8888888888888 00 55 55 5555 1 4 77 44 5 5 66 888888 11 11 1 5
lowQualScore : . . . ..... . . ...... . . .... .. ... ........... ...... . . ........................................................................................................... ... ........ . . .... . ............. .. .. .. .... . . .. .. . . .. ...... .. .. . .
lowQualScore : 1 4 2 66666 5 7 000000 7 9 4444 33 666 11111111111 888888 1 1 88888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 555 44444444 8 9 9999 8 5555555555555 99 55 33 0000 4 3 99 00 0 0 99 000000 99 44 7 7
consensus : NGTATACTCAGTTGCAAAAG-AAAGTGT----GC-ACTTTTAAAT-T------TC-AAA-TA-T--TT--T--NTAT-TCTA------TTTAT--A---GT-ACA-G---T--GAT-TA-TT-C-TTT-TACATC--TAC------A----TGAACACACGGATCTT-ATCGGT-AATA----TATTA--TAC-AAAA-ACAAAT--G--AC-ACCGTGACATTG--GCA---ATAGAATGACGAATATTTNG--ATACC---A--C---AT-ATGAC--ATT-TTTATTTTAGAATNTATA--CAACTAATTT-AAC-A--AAAANC-TCAGTG--CACNNTTTCTTTTGCAA-CGG
Reference ( gi|3 ) : CGTATACTCAGTTGCAAAAG-AAAATGG----GC-ACTTTTAAAT-T------TC-AAA-TA-G--TT--T--ATAT-TGGA------TTTAT--C---GT-ACA-G---T--GAT-TA-TT-C-TCT-TACATT--TGC------A----TGAACACACGGATCCTAATTGATAAGTAGGCCTATTA--TGCGAAAA-ACAAAG--G--AC-GCCGTGACATTG--ACA---ATAGAATGATGAATATTTGG--ATACC---A--C---AT-ATGAC--ATT-TTTATTCTATAGTTTATA--CAATTAATTT-AAC-A--AAATAC-TCAGTG--CACTATTTCTTTTACAA-CGGCGA
gi|9 : GTATATCCAGTTGTAAAAA-AAAGGGT----GC-ACTTTT---T-TTTTTTGTT-AAATTA-G--TTG-T--ATAT----A------TTTA
gi|5 : ttatatttcttttacatctacataaacacacgattctttatcaacaaatccggcattggcgatggattggtgagattgataacagtaaacgtgacctttacttTATACTCAGTTGCAAAGG-AAAATGACTGTGC-ACTTTTAAAT-TC-----TC-GAA-TA-ATTTT--T--TTAT-TATA------TTTAA--A---GT-ACA-G------G---TA-TA-T-TTT-TACATC--TTC------A----T-------CAGAT-----TT------------TATTA------AAAA-AT------G--AC-ACCATGTCATTG--GCA---ATAGAATGACGAAAACTTGA--A---C---A--C---AT--TTAC--ATTATTTTTTTTaa
gi|6 : aatatctctcatcacatgggtcgcacacataatacagaaaTATACTCTGTTGCAAAAG-AACATGT----GC-ATTTTTAAACAT------GC-TAA-TATA--TA--T--ATATGTGTGTTTTTTTTTAT--T----T-GCA-G---T--G-T-AA-TT-C-TTT-TACTTT--TACTTCTAAA----TGAACACATGGATTTT-ATTGGCAAATAtccaacta
gi|7 : TATAGTCAGTTGCAAAAA-TAAGTGT----AC-ACTTTTAAAT-T------TC-AGA-TA-T--TT--TCCATAC-T--A------TTTAT--A---GC-ACATG---T--G---TA-GT-T-TGTATA-ATT--TTT------A----TCA--ATACGGAACCTCATCGGTAAATAcattctgacgtcagcaacagcgtgatgaacatttactgatttcaaaactacttttaacaaagagcttagtgcgcactttcttttgcaa
gi|16 : atttagaagaatcattgtttttatttatcaataataTATATTTAGTTGCAAAAT-AAAGTGC----GC-ACTTTTAAAT-TA-----TT-AAA-TA-T--TT--T--CTATATAAA-------TTAA--A---GT-ACA-G---ctgaaacaaataaagtgatgacacttctcatactatatgcacctaac
gi|13 : atttaaagaaaatgtattatttacagttctgtctTATACTCAATTGCAAAAG-TAAGTGT----AT-AC-TTCACAT-T------TC-AAT-TA-T--TT--T--CTGT-TCTA------TTAAT--A---GA-ACA--------GATATACTT-T-TTC-TACATC--TAC------AT---TTTATACAAGGATCTTGATTGGTgtgtag
gi|12 : attttcatcaggcattcTAGACTCAGTTGTAAAAG-AAAATcaaaacttaatataaata
gi|1 : accattttaatatacaaaatttatacaacttatattactaaaacctcggtgtaaATACACAGTTGC-AAAG-AAAATGT----GC-AC---TAGAT-T------Tttataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|21 : atatatgttctcagttgcaaagaaagtatgcactttttaatttccaaatatttctagtttaattatagttcaggtgtaattctttcacagataactgaactgttaaatacaaaaaacaaaaatgacacaataacatggagaaaaataccacacattaaaacatttaaacataaacatttttgtttagagtctatacacctaatttaacaaATACTCAGTTGAGAAAG-AAAGTGT----GC-ACTTAAAATT-T------TC-AAA-TG-T--CT--T--CTAT-TCTA------TTTAT--ctattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|2 : TACTCAGTCGCAAAAG-AAATTGT----GC-ACag
gi|11 : atgtttatttcctcagtttcaaaagtaaagtgtgcgtttttaaattgcaaatgttctattttatttatagcacaggtacatggacacatggattattatactgaaaccaaatgaaccggtttattggaaaaagaaaaagaaaatatttttaaccatttatagcatattaatgtttatacaaccaatttaacgaaagcttcgTACTTGGTTACAAAAG-AAAGAAG----AC-GCTTTTAAAT-T------CCAAAA-TA-T--TT--T--CTGT-TCTA------TTTAT--A---GC-ACA-G---G--TA--TA-CTAC-TTT-TAGGTC--TAC------A----TATTTACACAGATattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|8 : aatacctctgattaatagacacaatatgaacacaatatataaatataattACACAGTTGCT---G-AAAGTGT----AC-ACGGTTGAAG-T------TC-AAA-TA-A--TT--T--CTAT-TTCA------TTTAT--A---GT-GCA-GGTAT--GAT-TA-TT-----T-TACATC--TTC------A----TGAA--CACGGATTTTTAGCGGTAAAAA--------A--TG---AAA-CCAA----T--AC-ATCGTGACATTG--GCA---ATAAAATGACGGATAATTGGTAATACA---A--T---AA-ATAA---ATT-TTTAat
gi|18 : ACTCTGTTGCAAAAG-AAAGT-G----TC-ACTT
gi|2 : attttgataccaaacatcatgtatttctgttaaaagatatatataagattaacaaaaacctCTCAGTTTCAAAAGTAAAGTGT----GC-GTTTTTAAAT-T------GC-AAA-TG-T--TC--T--ATTT-T--A------TTTAT--A---GC-ACA-G------G-----------------------TAC------A----TGGACACATGGAT-------------------TATTA--TACTGAAA-CCAAAT--G--A--ACCGGTTTATTGGAAAA---AGAAAAAGA-AAATATTTTT--A-ACC---A--T---TT-ATAGC--ATA-TTAAT------GTTTATA--CAACCAATTT-AAC-G--AAAGCT-TCGGTG--CACAATTTCTTTTGCGA-tt
gi|1 : atgtttatttcCTCAGTTGCAAA-G-AAAGTAT----GC-ACTTTTTAAT-T------TCCAAA-TA----TT--T--CTAG-TTTA------ATTAT--A---GT-TCA-GG--T--G-T-AA-TT-C-TTT-----------------------------CACAGAT---AACTGA-----A---CTGTTAAATACAAAAA-ACAAAAATG--AC-ACAATAACATGG--AGA---A--AAATACCACACATTAAA--ACATTTAAA--C---AT-A-AAC--ATT-TTTGTT-TAGAGTCTATA--CACCTAATTT-AAC-A--AAA-AT-CTAGTG--CAC-ATTTTCTTTGCAA-tgagtaattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|4 : atatatgttCTCAGTTGC-AAAG-AAAGTGT----TCAACTTTTAAAT-T------TC-AAA-TA-T--TT--T--CTGT-TCTA------TTTAT--A---GTAAAA-G---TAAAAT-AA-AT-----T-TACATC--CGC------ATGTCTGTGTGCAAGGATCTTAATCAATCAATA---CT-----------AAA-ATAAA------------------------------TAAATTGATGAAAATTTTG--ATACC---A--C---AC-TTAAC--GTG-TTTCTTTAAGAATTTATAGTTAAGTAGTTT-AAC-A--GAA-ACTTCAGTG--TACtgtgtatctattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|19 : CAGTTGAGAACG-AAAAAGT----TC-ACTTTTGAAT-T------TC-AAA-TA-C--TTTCT--ATAC-T--A------TCTAT--A---AT-ACA-G---acttaatattgtgattgattatatactagca
gi|10 : acTTTTAAAT-C-------C-AAA-TA-----T--G--ATCT-CT--------TCTAT--CATAGT-ACA-T---A--CAT-GT-TT-C-CAT-TACATC--TGC------A----TGAACACACGGATCT---TTGTTCCGTAA-------A--TACTAAAA-ACAACC--G--AC-CCCGTGACATTT--ACACACATTGTAT-ATTAGTATTTAT--ACACC---T--A---AT-ATAGC--Aatatataattaa
gi|17 : --TT--T--ATAT-TTTA------TTTATAGC---GG-A-A-G---T--A---TA-CT-CATTT-TAC-TTAATAT------A----TGAAGACATGCAT----ATTGTTTAGT-----TA--A--TACTAAAA-CCAAAT--G--AC-ACCGTGACATTG--GTA---ATA
gi|9 : -TT-C-TTT-TACATC--TAC------A----TAAACACACG-ATTCT------------------TTA--T-C----A-ACAAAT---------CCG--GCATTG--GCG---ATGGATTGGTGAG-ATT--G--ATAAC---A--GTAAAC-GTGAC----C-TTTACTTTA-AATATATA--CAACTAATTT-AACAA--AAAAAA-AAAGTG--CACCCTTTTTTTTACAA-
gi|15 : ttatatA--TACAAAAA-CCAAAT--G--AC-TACGTAACATTC--GCA---ATAAAATGACGA-TATTTTG--ATACC---A--C------ATGACATATT-TTTATTTTAGAATATATG--CAACAACTTTAAAT-A--AAAACC-TCAATG--TATGCTTTCTTTTGCAA-tggatatacaa
gi|14 : A--TGTAAACATACAAAA--GTGACAGATGTGATTTTA--ACA---ATAGAATGACGAATATTTTG--ATACC---A--T---GA-ATGGC--ATG-TTTACTTTACAATTCACG--CAAATAATTT-GAC-ATCAAA------AGTGTACATCATTTTTTTCAAAATCGGtgaataaagttt
gi|18 : ATTTTG--ATACC---AAAC---ATCATG-T--ATT-TCTGTTAAAAGATATATA--TAA--GATT--AAC-A--AAAACC-TAAGTGA-CACT--TTCTTTTGCAA-CAGtttataga
gi|6 : TTT-AAC-A--AAGAGC-TTAGTG--CGCACTTTCTTTTGCAA-agttt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): TTGCAAGAAGTGTCAACTTTTTTAATATTCTCTATTCTATTTATAGTAGAGCTATACCTATTTTACATCTACATG
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 1111111111111 444444444444444 11111111111111111111111111111 111 11111111111 1111
lowQualScore : 4 2 5555 2 2 5 2 2 33 3333333333333 1 8 333333333333333 2 2 2 2 777777 3 3 2 22222222222222222222222222222 3 44 4 4444 555 0 2 000 88888 1 11111111111 0 0000 7777 1 3 55 4 4 55 1 444 22
lowQualScore : . . .... . . . . . .. ............. . . ............... . . . . ...... . . . ............................. . .. . .... ... . . ... ..... . ........... . .... .... . . .. . . .. . ... ..
lowQualScore : 1 5 3333 5 5 0 7 7 77 8888888888888 0 0 999999999999999 9 9 9 9 000000 3 1 3 99999999999999999999999999999 1 22 0 9999 888 5 6 000 22222 7 22222222222 8 5555 4444 3 8 55 0 0 55 0 555 00
consensus : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TAC-ATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AA--A----TAT-ATAC-AAAAAC-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAACCTCA-GTGCACACTTTCTTTTGCAACGG
Reference ( family-1249 ) : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTNTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TAC-ATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AA-TA----TATTATAC-AAAAAC-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAANCTCA-GTGCACNNTTTCTTTTGCAACGG
gi|1 : CTCAGTTGCAAA-G-AAAG----TATGCA-CTTTTTAAT-T-TCCAAA-TA--T-------------TT-CTAGTTTAATTATAGTTCA-GGTG-T-AATT---C-TTT-CAC-AGA-TAAC-TGA----AC--------TGTT--A-------AA-TA----CA-------AAAAAC-AAAAATGACAC-AATAACAT-GGAG---A-AAAATACCACA--CATTAAA--ACATTTAAAC---ATA-AACAT--T-TTTGTTT--AGAGTCTATA--CACCTAAT-TT-AACA--AAAATCT-A-GTGCACATTTTC-TTTGCAAC
gi|1 : atatatgttATACACAGTTGCAAA-G-AAAA----TGTGCA-C---TAGAT-T-Ttgtgtatctattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|10 : atatatgttctcagttgcaaagaaagtatgcactttttaatttccaaatatttctagtttaattatagttcaggtgtaattctttcacagataactgaactgttaaatacaaaaaacaaaaatgacacaataacatggagaaaaataccacacattaaaacatttaaacataaacatttttgtttagagtctatacacctaatttaacaaTTTTAAAT-C--C-AAA-TA--T-------------GATCTCTTCTATC-ATAGTACA-T-ACAT-GTTT---C-CAT-TAC-ATC-TGCA-TGA----ACACACGGA-TCTTTGT-TCCGT-AA--A----TACT-----AAAAAC-AAC--CGACCC-CGTGACATTTACACACATTGTAT-ATTAG--TATTTAT--ACACC---TA---ATATAGCActattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|11 : TACTTGGTTACAAAAG-AAAG----AAGACG-CTTTTAAAT-T-CC-AAAATA--T-------------TTTCTGTTCTATTTATAGCACA-G-GTA--TACTA--C-TTT-TAG-GTC-TACA-TAT----TTACACAGA-T
gi|12 : aatacctctgattaatagacacaatatgaacacaatatataaatataattCAT--T-TTAATATACAAAATTTATA--CAACTTAT-AT-TACT--AAAACCTCG-GTGTAAATTTTCTTTTACAACat
gi|13 : acTATACTCAATTGCAAAAG-TAAG----TGTATA-CTTC-ACAT-T-TC-AAT-TA--T-------------TTTCTGTTCTATTAATAGAACA-G---ATATACT---T-TTTCTAC-ATC-TACATTTT----ATACAAGGA-TCTTG-A-TTGGTCAA-AA----CTTAATAT-AAAtgagtctattataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|14 : attttcatcaggcattcATAC-AAAAG-------TGACAGATGTGATTTTAACA---ATAGAATGACGAA--TATTTTG--ATACC---AT---GAATGGCAT--G-TTTACTT-TACAATTCACG--CAAATAAT-TT-GACATCAAAAGT----GTACATCATTTTTTTta
gi|15 : atgtaaacATAC-AAAAACCAAA--TGACTA-CGTAACATTCGCA---ATAAAATGACGA---TATTTTG--ATACC---AC---AT--GACATATT-TTTATTT-TAGAATATATG--CAACAACT-TTAAATA--AAAACCTCA-ATGTATGCTTTCTTTTGCAACcaaaatcggtttataga
gi|16 : TATATTTAGTTGCAAAAT-AAAG----TGCGCA-CTTTTAAAT-TATT-AAA-TA--T-------------TTTCTATATAAATTAAAGTACA-G-tgaataaagttt
gi|17 : atttaaagaaaatgtattatttacagttctgtct-------------TTTATATTTTATTTATAGCGGAAG-TA---TACT---CATTT-TAC-TTAATATA-TGA----AGACATGCA-TATT--G-TT--T-AG-T-----TA--ATACTAAAACC-AAA--TGACAC-CGTGACATTGGTA---ATAgtgtag
gi|18 : ATTTTG--ATACC---AA---ACATCATGT--A-TTTCTGT-TAAAAGATATA--TA--TAAGATT-AACA--AAAACCTAA-GTG-ACACTTTCTTTTGCAACAG
gi|19 : CAGTTGAGAACG-AAAA----AGTTCA-CTTTTGAAT-T-TC-AAA-TA--C-------------TTTCTATACTATCTATAATACA-G-agttt
gi|2 : acCTCAGTTTCAAAAGTAAAG----TGTGCG-TTTTTAAAT-T-GC-AAA-TG--T-------------T--CTATTTTATTTATAGCACA-G--G------------------------TACA-TGG----ACACATGGA-T----------------------TATTATACTGAAACC-AAA--TGA-AC-CGGTTTATTGGAA---AAAGAA-AAAGAAAATATTTTT--A-ACC---AT---TTATAGCAT--A-TTAATGT-T------TATA--CAACCAAT-TT-AACG--AAAGCTTCG-GTGCACAATTTCTTTTGCGACatatataattaa
gi|2 : atgtttatttcTACTCAGTCGCAAAAG-AAAT----TGTGCA-Ctgagtaattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|20 : atgtttatttcctcagtttcaaaagtaaagtgtgcgtttttaaattgcaaatgttctattttatttatagcacaggtacatggacacatggattattatactgaaaccaaatgaaccggtttattggaaaaagaaaaagaaaatatttttaaccatttatagcatattaatgtttatacaaccaatttaacgaaagcttcgTTGCAAGA----AG----TGTCAA-CTTTT-----T-T---AA-TA--T-------------TCTCTATTCTATTTATAGTAGA-G-CTAT-ACCT---A-TTT-TAC-ATC-TACA-TGattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|21 : ATACTCAGTTGAGAAAG-AAAG----TGTGCA-CTTAAAATT-T-TC-AAA-TG--T-------------CTTCTATTCTATTTATAG
gi|3 : GTATACTCAGTTGCAAAAG-AAAA----TGGGCA-CTTTTAAAT-T-TC-AAA-TA--G-------------TTTATATTGGATTTATCGTACA-G-TGAT-TATT---C-TCT-TAC-ATT-TGCA-TGA----ACACACGGA-TCCT--AATTGAT-AAGTAGGCCTATTATGCGAAAAAC-AAA--GGACGC-CGTGACATTGACA---ATAGAATGATGAA--TATTTGG--ATACC---AC---ATATGACAT--T-TTTATTC-TATAGTTTATA--CAATTAAT-TT-AACA--AAATACTCA-GTGCACTATTTCTTTTACAACGG
gi|4 : cCTCAGTTGCAAA-G-AAAG----TGTTCAACTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTGTTCTATTTATAGTAAAAG-TAAA--ATA---A-ATT-TAC-ATC-CGCA-TGTCTGTGTGCAAGGA-TCTTA-A-TCAAT-CA-----------ATAC-TAAAAT-AAA--TAA----------ATTG-----------ATGA--AA---ATTTTG--ATACC---AC---ACTTAACGT--G-TTTCTTT-AAGAATTTATAGTTAAGTAGT-TT-AACA--GAAACTTCA-GTGTACACTTcga
gi|5 : TATACTCAGTTGCAAAGG-AAAATGACTGTGCA-CTTTTAAAT-TCTC-GAA-TAATT-------------TTTTTATTATATTTAAAGTACA-G--G---TATA---T-TTT-TAC-ATC-TTCA-T-----------CAGA-TTTT--A-T---------------------T-AAA----AAA--TGACAC-CATGTCATTGGCA---ATAGAATGACGAA--AACTTGA--A---C---AC---AT-TTACAT--TATTTTTTT-Taatattgtgattgattatatactagca
gi|6 : aatatctctcatcacatgggtcgcacacataatacagaaaTATACTCTGTTGCAAAAG-AACA----TGTGCA-TTTTTAAACAT-GC-TAA-TA--TATATATATGTGTGTTTTT-TTTTATTTGCAGT----G-TAAT-TCTTTTAC-TTT-TAC-TTC-TAAA-TGA----ACACATGGA-TTTT--A-TTGG-------------------------C-AAA--T-ACAT-TCTGACGTCAGCA---ACAGCGTGATGAA--CATT------TAC------------TG-----------ATTT-CAAA------A--CTACT--T-TT-AACA--AAGAGCTTA-GTGCGCACTTTCTTTTGCAAtccaacta
gi|7 : TATAGTCAGTTGCAAAAA-TAAG----TGTACA-CTTTTAAAT-T-TC-AGA-TA--T-------------TTTCCATACTATTTATAGCACATG-TG---TAGT-----TTG-TATAATT-TTTA-TCA----ATACG-GAA-CCTC--A-TCGGT-AA-----------ATAC-TGAAAC-AAA--TAAAGT-GATGACACT
gi|8 : atttagaagaatcattgtttttatttatcaataataACACAGTTGCT---G-AAAG----TGTACA-CGGTTGAAG-T-TC-AAA-TA--A-------------TTTCTATTTCATTTATAGTGCA-G-GTAT-GATT---A-TTT-TAC-ATC-TTCA-TGA------ACACGGATTTTT--A-GCGGT-AA-AA----AAT-------GAAAC-CAA--T-ACAT-CGTGACATTGGCA---ATAAAATGACGGA--TAATTGGTAATACA---AT---AAATAA-AT--T-TTTAtctcatactatatgcacctaac
gi|9 : TT---C-TTT-TAC-ATC-TACA-TAA----ACACACGAT-TCTT-------------------TATCA--------AC-AAA--T----C-CG--GCATTGGCG---ATGGATTGGTGAG---ATT--G--ATAAC---AGTAAACGTGAC----C-TTTACTT-TA-AATATATA--CAACTAAT-TT-AACA--AAAAAAAAAAGTGCACCCTTTTTTTTACAAC
Alignments
lowQualScore : 1111111111111 444444444444444 77777777777777777777777777777777 111 11111111111 1111 111111
lowQualScore : 2 2 4444 2 2 5 2 2 33 3333333333333 8 333333333333333 2 2 2 2 777777 3 3 2 44444444444444444444444444444444 3 44 2 9999 555 0 2 000 88888 1 11111111111 0 0000 7777 1 3 55 4 4 55 111111 4 1
lowQualScore : . . .... . . . . . .. ............. . ............... . . . . ...... . . . ................................ . .. . .... ... . . ... ..... . ........... . .... .... . . .. . . .. ...... . .
lowQualScore : 7 2 7777 2 5 0 7 7 77 8888888888888 0 999999999999999 9 9 9 9 000000 3 1 3 77777777777777777777777777777777 1 22 1 4444 888 5 6 000 22222 7 22222222222 8 5555 4444 3 8 55 0 0 55 666666 1 4
consensus : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TAC-ATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AAA---TA--------ATAC-AAAAAC-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
Reference ( family-1249 ) : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TAC-ATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AAA---TA-------TATAC-AAAAAC-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
gi|1 : CTCAGTTGCAAA-G-AAAG----TATGCA-CTTTTTAAT-T-TCCAAA-TA--T-------------TT-CTAGTTTAATTATAGTTCA-GGTG-T-AATT---C-TTT-CAC-AGA-TAAC-TGA----AC-----------T--G-T---T-AAA---TA-------CA----AAAAAC-AAAAATGACAC-AATAACAT-GGAG---A-AAAATACCACA--CATTAAA--ACATTTAAAC---ATA-AACAT--T-TTTGTTT--AGAGTCTATA--CACCTAAT-TT-AACA--AAAA-----TCT-AGTGCACATTTTC-TTTGCAAC
gi|1 : atatatgttATACACAGTTGCAAA-G-AAAA----TGTGCA-C---TAGAT-T-Ttgtgtatctattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|10 : atatatgttctcagttgcaaagaaagtatgcactttttaatttccaaatatttctagtttaattatagttcaggtgtaattctttcacagataactgaactgttaaatacaaaaaacaaaaatgacacaataacatggagaaaaataccacacattaaaacatttaaacataaacatttttgtttagagtctatacacctaatttaacaaTTTTAAAT-C--C-AAA-TA--T-------------GATCTCTTCTATC-ATAGTACA-T-ACAT-GTTT---C-CAT-TAC-ATC-TGCA-TGA----ACACACGGA-TCTTTGT-TCCGT-AAA---TA-------C---T-AAAAAC-AAC--CGACCC-CGTGACATTTACACACATTGTAT-ATTAG--TATTTAT--ACACC---TA---ATATAGCActattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|11 : TACTTGGTTACAAAAG-AAAG----AAGACG-CTTTTAAAT-T-CC-AAAATA--T-------------TTTCTGTTCTATTTATAGCACA-G-GTA--TACTA--C-TTT-TAG-GTC-TACA-TAT----TTACACAGA-T
gi|12 : aatacctctgattaatagacacaatatgaacacaatatataaatataattCAT--T-TTAATATACAAAATTTATA--CAACTTAT-AT-TACT--AAAA-----CCTCGGTGTAAATTTTCTTTTACAACat
gi|12 : acTAGACTCAGTTGTAAAAG-AAAA----TTTACA-Ctgagtctattataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|13 : accattttaatatacaaaatttatacaacttatattactaaaacctcgTATACTCAATTGCAAAAG-TAAG----TGTATA-CTTC-ACAT-T-TC-AAT-TA--T-------------TTTCTGTTCTATTAATAGAACA-G---ATATACT---T-TTTCTAC-ATC-TACATTTT----ATACAAGGA-TCTTG-A-TTGGTCAAAACTTA--------ATAT-AAAttataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|14 : attttcatcaggcattcGT-AAA---CA-------TA--C-AAAAG-------TGACAGATGTGATTTTAACA---ATAGAATGACGAA--TATTTTG--ATACC---AT---GAATGGCAT--G-TTTACTT-TACAATTCACG--CAAATAAT-TT-GACATCAAA----------AGTGTACATCATTTTTTTCAAta
gi|15 : atATAC-AAAAACCAAA--TGACTA-CGTAACATTCGCA---ATAAAATGACGA---TATTTTG--ATACC---AC---AT--GACATATT-TTTATTT-TAGAATATATG--CAACAACT-TTAAATA--AAAA-----CCTCAATGTATGCTTTCTTTTGCAACaatcggtttataga
gi|16 : TATATTTAGTTGCAAAAT-AAAG----TGCGCA-CTTTTAAAT-TATT-AAA-TA--T-------------TTTCTATATAAATTAAAGTACA-G-tgaataaagttt
gi|17 : atttaaagaaaatgtattatttacagttctgtct-------------TTTATATTTTATTTATAGCGGAAG-TA---TACT---CATTT-TAC-TTAATATA-TGA----AGACATGCA-TATT--G-TT--T-AGT---TA--------ATACTAAAACC-AAA--TGACAC-CGTGACATTGGTA---ATAgtgtag
gi|18 : ATTTTG--ATACC---AA---ACATCATGT--A-TTTCTGT-TAAAAGATATA--TA--TAAGATT-AACA--AAAA-----CCTAAGTG-ACACTTTCTTTTGCAACAG
gi|19 : CAGTTGAGAACG-AAAA----AGTTCA-CTTTTGAAT-T-TC-AAA-TA--C-------------TTTCTATACTATCTATAATACA-G-agttt
gi|2 : acCTCAGTTTCAAAAGTAAAG----TGTGCG-TTTTTAAAT-T-GC-AAA-TG--T-------------T--CTATTTTATTTATAGCACA-G--G------------------------TACA-TGG----ACACATGGA-T--T--A-T--------------------TATACTGAAACC-AAA--TGA-AC-CGGTTTATTGGAA---AAAGAA-AAAGAAAATATTTTT--A-ACC---AT---TTATAGCAT--A-TTAATGT-T------TATA--CAACCAAT-TT-AACG--AAAG-----CTTCGGTGCACAATTTCTTTTGCGACatatataattaa
gi|2 : atgtttatttcTACTCAGTCGCAAAAG-AAAT----TGTGCA-Ctgagtaattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|20 : atgtttatttcctcagtttcaaaagtaaagtgtgcgtttttaaattgcaaatgttctattttatttatagcacaggtacatggacacatggattattatactgaaaccaaatgaaccggtttattggaaaaagaaaaagaaaatatttttaaccatttatagcatattaatgtttatacaaccaatttaacgaaagcttcgTTGCAAGA----AG----TGTCAA-CTTTT-----T-T---AA-TA--T-------------TCTCTATTCTATTTATAGTAGA-G-CTAT-ACCT---A-TTT-TAC-ATC-TACA-TGattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|21 : ATACTCAGTTGAGAAAG-AAAG----TGTGCA-CTTAAAATT-T-TC-AAA-TG--T-------------CTTCTATTCTATTTATAG
gi|3 : GTATACTCAGTTGCAAAAG-AAAA----TGGGCA-CTTTTAAAT-T-TC-AAA-TA--G-------------TTTATATTGGATTTATCGTACA-G-TGAT-TATT---C-TCT-TAC-ATT-TGCA-TGA----ACACACGGA-TCCT--AATTGAT-AAG---TAGGCCTATTATGCGAAAAAC-AAA--GGACGC-CGTGACATTGACA---ATAGAATGATGAA--TATTTGG--ATACC---AC---ATATGACAT--T-TTTATTC-TATAGTTTATA--CAATTAAT-TT-AACA--AAAT-----ACTCAGTGCACTATTTCTTTTACAACGG
gi|4 : cCTCAGTTGCAAA-G-AAAG----TGTTCAACTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTGTTCTATTTATAGTAAAAG-TAAA--ATA---A-ATT-TAC-ATC-CGCA-TGTCTGTGTGCAAGGA-TCTTA-A-TC-----AA---TC-------AATAC-TAAAAT-AAA--TAA----------ATTG-----------ATGA--AA---ATTTTG--ATACC---AC---ACTTAACGT--G-TTTCTTT-AAGAATTTATAGTTAAGTAGT-TT-AACA--GAAA-----CTTCAGTGTACACTTcga
gi|5 : TATACTCAGTTGCAAAGG-AAAATGACTGTGCA-CTTTTAAAT-TCTC-GAA-TAATT-------------TTTTTATTATATTTAAAGTACA-G--G---TATA---T-TTT-TAC-ATC-TTCA-T-----------CAGA-TTTT--A-T---T-AAA-------------------------AAA--TGACAC-CATGTCATTGGCA---ATAGAATGACGAA--AACTTGA--A---C---AC---AT-TTACAT--TATTTTTTT-Taatattgtgattgattatatactagca
gi|6 : aatatctctcatcacatgggtcgcacacataatacagaaaTATACTCTGTTGCAAAAG-AACA----TGTGCA-TTTTTAAACAT-GC-TAA-TA--TATATATATGTGTGTTTTT-TTTTATTTGCAGT----G-TAAT-TCTTTTAC-TTT-TAC-TTC-TAAA-TGA----ACACATGGA-TTTT--A-TTGGC-AAA---TA-------CATTC----------------------TGACGTCAGCA---ACAGCGTGATGAA--CATT------TAC------------TG-----------ATTT-CAAA------A--CTACT--T-TT-AACA--AAGA-----GCTTAGTGCGCACTTTCTTTTGCAAtccaacta
gi|7 : TATAGTCAGTTGCAAAAA-TAAG----TGTACA-CTTTTAAAT-T-TC-AGA-TA--T-------------TTTCCATACTATTTATAGCACATG-TG---TAGT-----TTG-TATAATT-TTTA-TCA----ATACG-GAA-CCTC--A-TCGGT-AA--------------ATAC-TGAAAC-AAA--TAAAGT-GATGACACT
gi|8 : atttagaagaatcattgtttttatttatcaataataACACAGTTGCT---G-AAAG----TGTACA-CGGTTGAAG-T-TC-AAA-TA--A-------------TTTCTATTTCATTTATAGTGCA-G-GTAT-GATT---A-TTT-TAC-ATC-TTCA-TGA------ACACGGATTTTT--A-GCGGT-AAA----A-------AAT----GAAAC-CAA--T-ACAT-CGTGACATTGGCA---ATAAAATGACGGA--TAATTGGTAATACA---AT---AAATAA-AT--T-TTTAtctcatactatatgcacctaac
gi|9 : TT---C-TTT-TAC-ATC-TACA-TAA----ACACACGAT-TCTTT-A-TC----------------------------AAC-AAA--T----C-CG--GCATTGGCG---ATGGATTGGTGAG---ATT--G--ATAAC---AGTAAACGTGAC----C-TTTACTT-TA-AATATATA--CAACTAAT-TT-AACA--AAAAAAAAA----AGTGCACCCTTTTTTTTACAAC
gi|9 : ttatatGTATATCCAGTTGTAAAAA-AAAG----GGTGCA-CTTTTtggatatacaa
Alignments
lowQualScore : 1111111111111 444444444444444 666666666666666666666666666666666 111 11111111111 1111 111111
lowQualScore : 2 2 4444 2 2 5 2 2 33 3333333333333 8 111111111111111 5 2 2 777777 3 3 2 888888888888888888888888888888888 555 44 2 4444 555 0 2 000 88888 1 11111111111 0 0000 7777 1 3 55 4 4 55 111111 4 1
lowQualScore : . . .... . . . . . .. ............. . ............... . . . ...... . . . ................................. ... .. . .... ... . . ... ..... . ........... . .... .... . . .. . . .. ...... . .
lowQualScore : 7 2 7777 2 5 0 7 7 77 8888888888888 0 555555555555555 7 9 9 000000 3 1 3 222222222222222222222222222222222 111 22 1 9999 888 5 6 000 22222 7 22222222222 8 5555 4444 3 8 55 0 0 55 666666 1 4
consensus : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TACATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AAA---T-A--------ATAC-AAAAA-C-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
Reference ( family-1249 ) : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TACATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AAA---T-A--------ATAC-AAAAA-C-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
gi|1 : CTCAGTTGCAAA-G-AAAG----TATGCA-CTTTTTAAT-T-TCCAAA-TA--T-------------TT-CTAGTTTAATTATAGTTCA-GGTG-T-AATT---C-TTT-CACAGA-TAAC-TGA----AC--------TGTT--A---------------A--------ATAC-AAAAAAC-AAAAATGACAC-AATAACAT-GGAG---A-AAAATACCACA--CATTAAA--ACATTTAAAC---ATA-AACAT--T-TTTGTTT--AGAGTCTATA--CACCTAAT-TT-AACA--AAAA-----TCT-AGTGCACATTTTC-TTTGCAAC
gi|1 : atatatgttATACACAGTTGCAAA-G-AAAA----TGTGCA-C---TAGAT-T-Ttgtgtatctattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|10 : atatatgttctcagttgcaaagaaagtatgcactttttaatttccaaatatttctagtttaattatagttcaggtgtaattctttcacagataactgaactgttaaatacaaaaaacaaaaatgacacaataacatggagaaaaataccacacattaaaacatttaaacataaacatttttgtttagagtctatacacctaatttaacaaTTTTAAAT-C--C-AAA-TA--T-------------GATCTCTTCTATC-ATAGTACA-T-ACAT-GTTT---C-CAT-TACATC-TGCA-TGA----ACACACGGA-TCTTTGT-TCCGT-AAA---T-A--------CT---AAAAA-C-AAC--CGACCC-CGTGACATTTACACACATTGTAT-ATTAG--TATTTAT--ACACC---TA---ATATAGCActattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|11 : TACTTGGTTACAAAAG-AAAG----AAGACG-CTTTTAAAT-T-CC-AAAATA--T-------------TTTCTGTTCTATTTATAGCACA-G-GTA--TACTA--C-TTT-TAGGTC-TACA-TAT----TTACACAGA-T
gi|12 : aatacctctgattaatagacacaatatgaacacaatatataaatataattCAT--T-TTAATATACAAAATTTATA--CAACTTAT-AT-TACT--AAAA-----CCTCGGTGTAAATTTTCTTTTACAACat
gi|12 : acTAGACTCAGTTGTAAAAG-AAAA----TTTACA-Ctgagtctattataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|13 : accattttaatatacaaaatttatacaacttatattactaaaacctcgTATACTCAATTGCAAAAG-TAAG----TGTATA-CTTC-ACAT-T-TC-AAT-TA--T-------------TTTCTGTTCTATTAATAGAACA-G---ATATACT---T-TTTCTACATC-TACATTTT----ATACAAGGA-TCTTG-A-TTGGTCAAAACTT-A--------ATAT-AAAttataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|14 : attttcatcaggcattcGT-AAA---C-A---------TAC-AAAAG--------TGACAGATGTGATTTTAACA---ATAGAATGACGAA--TATTTTG--ATACC---AT---GAATGGCAT--G-TTTACTT-TACAATTCACG--CAAATAAT-TT-GACATCAAA----------AGTGTACATCATTTTTTTCAAta
gi|15 : at--------ATAC-AAAAA-CCAAA--TGACTA-CGTAACATTCGCA---ATAAAATGACGA---TATTTTG--ATACC---AC---AT--GACATATT-TTTATTT-TAGAATATATG--CAACAACT-TTAAATA--AAAA-----CCTCAATGTATGCTTTCTTTTGCAACaatcggtttataga
gi|16 : TATATTTAGTTGCAAAAT-AAAG----TGCGCA-CTTTTAAAT-TATT-AAA-TA--T-------------TTTCTATATAAATTAAAGTACA-G-tgaataaagttt
gi|17 : atttaaagaaaatgtattatttacagttctgtct-------------TTTATATTTTATTTATAGCGGAAG-TA---TACT---CATTT-TACTTAATATA-TGA----AGACATGCA-TATT--G-TT--T-AGT---T-A--------ATACTAAAAC-C-AAA--TGACAC-CGTGACATTGGTA---ATAgtgtag
gi|18 : ATTTTG--ATACC---AA---ACATCATGT--A-TTTCTGT-TAAAAGATATA--TA--TAAGATT-AACA--AAAA-----CCTAAGTG-ACACTTTCTTTTGCAACAG
gi|19 : CAGTTGAGAACG-AAAA----AGTTCA-CTTTTGAAT-T-TC-AAA-TA--C-------------TTTCTATACTATCTATAATACA-G-agttt
gi|2 : acCTCAGTTTCAAAAGTAAAG----TGTGCG-TTTTTAAAT-T-GC-AAA-TG--T-------------T--CTATTTTATTTATAGCACA-G--G-----------------------TACA-TGG----ACACATGGA-T--T--A-TT---------------------ATACTGAAAC-C-AAA--TGA-AC-CGGTTTATTGGAA---AAAGAA-AAAGAAAATATTTTT--A-ACC---AT---TTATAGCAT--A-TTAATGT-T------TATA--CAACCAAT-TT-AACG--AAAG-----CTTCGGTGCACAATTTCTTTTGCGACatatataattaa
gi|2 : atgtttatttcTACTCAGTCGCAAAAG-AAAT----TGTGCA-Ctgagtaattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|20 : atgtttatttcctcagtttcaaaagtaaagtgtgcgtttttaaattgcaaatgttctattttatttatagcacaggtacatggacacatggattattatactgaaaccaaatgaaccggtttattggaaaaagaaaaagaaaatatttttaaccatttatagcatattaatgtttatacaaccaatttaacgaaagcttcgTTGCAAGA----AG----TGTCAA-CTTTT-----T-T---AA-TA--T-------------TCTCTATTCTATTTATAGTAGA-G-CTAT-ACCT---A-TTT-TACATC-TACA-TGattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|21 : ATACTCAGTTGAGAAAG-AAAG----TGTGCA-CTTAAAATT-T-TC-AAA-TG--T-------------CTTCTATTCTATTTATAG
gi|3 : GTATACTCAGTTGCAAAAG-AAAA----TGGGCA-CTTTTAAAT-T-TC-AAA-TA--G-------------TTTATATTGGATTTATCGTACA-G-TGAT-TATT---C-TCT-TACATT-TGCA-TGA----ACACACGGA-TCCT--AATTGAT-AAG---T-AGGCCTATTATGCGAAAAA-C-AAA--GGACGC-CGTGACATTGACA---ATAGAATGATGAA--TATTTGG--ATACC---AC---ATATGACAT--T-TTTATTC-TATAGTTTATA--CAATTAAT-TT-AACA--AAAT-----ACTCAGTGCACTATTTCTTTTACAACGG
gi|4 : cCTCAGTTGCAAA-G-AAAG----TGTTCAACTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTGTTCTATTTATAGTAAAAG-TAAA--ATA---A-ATT-TACATC-CGCA-TGTCTGTGTGCAAGGA-TCTTA-A-TC-----AA---TCA--------ATAC-TAAAA-T-AAA--TAA----------ATTG-----------ATGA--AA---ATTTTG--ATACC---AC---ACTTAACGT--G-TTTCTTT-AAGAATTTATAGTTAAGTAGT-TT-AACA--GAAA-----CTTCAGTGTACACTTcga
gi|5 : TATACTCAGTTGCAAAGG-AAAATGACTGTGCA-CTTTTAAAT-TCTC-GAA-TAATT-------------TTTTTATTATATTTAAAGTACA-G--G---TATA---T-TTT-TACATC-TTCA-T-----------CAGA-TTTT--A-T---T-AAA---------------------------AAA--TGACAC-CATGTCATTGGCA---ATAGAATGACGAA--AACTTGA--A---C---AC---AT-TTACAT--TATTTTTTT-Taatattgtgattgattatatactagca
gi|6 : aatatctctcatcacatgggtcgcacacataatacagaaaTATACTCTGTTGCAAAAG-AACA----TGTGCA-TTTTTAAACAT-GC-TAA-TA--TATATATATGTGTGTTTTT-TTTTATTTGCAGT----G-TAAT-TCTTTTAC-TTT-TACTTC-TAAA-TGA----ACACATGGA-TTTT--A-TTGGC-AAA---T------------------------------ACAT-TCTGACGTCAGCA---ACAGCGTGATGAA--CATT------TAC------------TG-----------ATTT-CAAA------A--CTACT--T-TT-AACA--AAGA-----GCTTAGTGCGCACTTTCTTTTGCAAtccaacta
gi|7 : TATAGTCAGTTGCAAAAA-TAAG----TGTACA-CTTTTAAAT-T-TC-AGA-TA--T-------------TTTCCATACTATTTATAGCACATG-TG---TAGT---T-TGTATA-ATT-TTTA-TCA----ATACG-GAA-CCTC--A-TCGGT-AAA---T-A--------CTG----AAA-C-AAA--TAAAGT-GATGACACT
gi|8 : atttagaagaatcattgtttttatttatcaataataACACAGTTGCT---G-AAAG----TGTACA-CGGTTGAAG-T-TC-AAA-TA--A-------------TTTCTATTTCATTTATAGTGCA-G-GTAT-GATT---A-TTT-TACATC-TTCA-TGA------ACACGGATTTTT--A-GCGGT-AAA---A-A--------AT----GAAA-C-CAA--T-ACAT-CGTGACATTGGCA---ATAAAATGACGGA--TAATTGGTAATACA---AT---AAATAA-AT--T-TTTAtctcatactatatgcacctaac
gi|9 : TT---C-TTT-TACATC-TACA-TAA----ACACACGAT-TCTTT-A-TC-----------------------------AA-C-AAA--T----C-CG--GCATTGGCG---ATGGATTGGTGAG---ATT--G--ATAAC---AGTAAACGTGAC----C-TTTACTT-TA-AATATATA--CAACTAAT-TT-AACA--AAAAAAAAA----AGTGCACCCTTTTTTTTACAAC
gi|9 : ttatatGTATATCCAGTTGTAAAAA-AAAG----GGTGCA-CTTTTtggatatacaa
Alignments
lowQualScore : 1111111111111 444444444444444 666666666666666666666666666666666 111 11111111111 1111 111111
lowQualScore : 2 2 4444 2 2 5 2 2 33 3333333333333 8 111111111111111 5 2 2 777777 3 3 2 888888888888888888888888888888888 555 44 2 4444 555 0 2 000 88888 1 11111111111 0 0000 7777 1 3 55 4 4 55 111111 4 1
lowQualScore : . . .... . . . . . .. ............. . ............... . . . ...... . . . ................................. ... .. . .... ... . . ... ..... . ........... . .... .... . . .. . . .. ...... . .
lowQualScore : 7 2 7777 2 5 0 7 7 77 8888888888888 0 555555555555555 7 9 9 000000 3 1 3 222222222222222222222222222222222 111 22 1 9999 888 5 6 000 22222 7 22222222222 8 5555 4444 3 8 55 0 0 55 666666 1 4
consensus : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TACATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AAA---T-A--------ATAC-AAAAA-C-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
Reference ( family-1249 ) : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TACATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AAA---T-A--------ATAC-AAAAA-C-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
gi|1 : CTCAGTTGCAAA-G-AAAG----TATGCA-CTTTTTAAT-T-TCCAAA-TA--T-------------TT-CTAGTTTAATTATAGTTCA-GGTG-T-AATT---C-TTT-CACAGA-TAAC-TGA----AC--------TGTT--A---------------A--------ATAC-AAAAAAC-AAAAATGACAC-AATAACAT-GGAG---A-AAAATACCACA--CATTAAA--ACATTTAAAC---ATA-AACAT--T-TTTGTTT--AGAGTCTATA--CACCTAAT-TT-AACA--AAAA-----TCT-AGTGCACATTTTC-TTTGCAAC
gi|1 : atatatgttATACACAGTTGCAAA-G-AAAA----TGTGCA-C---TAGAT-T-Ttgtgtatctattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|10 : atatatgttctcagttgcaaagaaagtatgcactttttaatttccaaatatttctagtttaattatagttcaggtgtaattctttcacagataactgaactgttaaatacaaaaaacaaaaatgacacaataacatggagaaaaataccacacattaaaacatttaaacataaacatttttgtttagagtctatacacctaatttaacaaTTTTAAAT-C--C-AAA-TA--T-------------GATCTCTTCTATC-ATAGTACA-T-ACAT-GTTT---C-CAT-TACATC-TGCA-TGA----ACACACGGA-TCTTTGT-TCCGT-AAA---T-A--------CT---AAAAA-C-AAC--CGACCC-CGTGACATTTACACACATTGTAT-ATTAG--TATTTAT--ACACC---TA---ATATAGCActattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|11 : TACTTGGTTACAAAAG-AAAG----AAGACG-CTTTTAAAT-T-CC-AAAATA--T-------------TTTCTGTTCTATTTATAGCACA-G-GTA--TACTA--C-TTT-TAGGTC-TACA-TAT----TTACACAGA-T
gi|12 : aatacctctgattaatagacacaatatgaacacaatatataaatataattCAT--T-TTAATATACAAAATTTATA--CAACTTAT-AT-TACT--AAAA-----CCTCGGTGTAAATTTTCTTTTACAACat
gi|12 : acTAGACTCAGTTGTAAAAG-AAAA----TTTACA-Ctgagtctattataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|13 : accattttaatatacaaaatttatacaacttatattactaaaacctcgTATACTCAATTGCAAAAG-TAAG----TGTATA-CTTC-ACAT-T-TC-AAT-TA--T-------------TTTCTGTTCTATTAATAGAACA-G---ATATACT---T-TTTCTACATC-TACATTTT----ATACAAGGA-TCTTG-A-TTGGTCAAAACTT-A--------ATAT-AAAttataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|14 : attttcatcaggcattcGT-AAA---C-A---------TAC-AAAAG--------TGACAGATGTGATTTTAACA---ATAGAATGACGAA--TATTTTG--ATACC---AT---GAATGGCAT--G-TTTACTT-TACAATTCACG--CAAATAAT-TT-GACATCAAA----------AGTGTACATCATTTTTTTCAAta
gi|15 : at--------ATAC-AAAAA-CCAAA--TGACTA-CGTAACATTCGCA---ATAAAATGACGA---TATTTTG--ATACC---AC---AT--GACATATT-TTTATTT-TAGAATATATG--CAACAACT-TTAAATA--AAAA-----CCTCAATGTATGCTTTCTTTTGCAACaatcggtttataga
gi|16 : TATATTTAGTTGCAAAAT-AAAG----TGCGCA-CTTTTAAAT-TATT-AAA-TA--T-------------TTTCTATATAAATTAAAGTACA-G-tgaataaagttt
gi|17 : atttaaagaaaatgtattatttacagttctgtct-------------TTTATATTTTATTTATAGCGGAAG-TA---TACT---CATTT-TACTTAATATA-TGA----AGACATGCA-TATT--G-TT--T-AGT---T-A--------ATACTAAAAC-C-AAA--TGACAC-CGTGACATTGGTA---ATAgtgtag
gi|18 : ATTTTG--ATACC---AA---ACATCATGT--A-TTTCTGT-TAAAAGATATA--TA--TAAGATT-AACA--AAAA-----CCTAAGTG-ACACTTTCTTTTGCAACAG
gi|19 : CAGTTGAGAACG-AAAA----AGTTCA-CTTTTGAAT-T-TC-AAA-TA--C-------------TTTCTATACTATCTATAATACA-G-agttt
gi|2 : acCTCAGTTTCAAAAGTAAAG----TGTGCG-TTTTTAAAT-T-GC-AAA-TG--T-------------T--CTATTTTATTTATAGCACA-G--G-----------------------TACA-TGG----ACACATGGA-T--T--A-TT---------------------ATACTGAAAC-C-AAA--TGA-AC-CGGTTTATTGGAA---AAAGAA-AAAGAAAATATTTTT--A-ACC---AT---TTATAGCAT--A-TTAATGT-T------TATA--CAACCAAT-TT-AACG--AAAG-----CTTCGGTGCACAATTTCTTTTGCGACatatataattaa
gi|2 : atgtttatttcTACTCAGTCGCAAAAG-AAAT----TGTGCA-Ctgagtaattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|20 : atgtttatttcctcagtttcaaaagtaaagtgtgcgtttttaaattgcaaatgttctattttatttatagcacaggtacatggacacatggattattatactgaaaccaaatgaaccggtttattggaaaaagaaaaagaaaatatttttaaccatttatagcatattaatgtttatacaaccaatttaacgaaagcttcgTTGCAAGA----AG----TGTCAA-CTTTT-----T-T---AA-TA--T-------------TCTCTATTCTATTTATAGTAGA-G-CTAT-ACCT---A-TTT-TACATC-TACA-TGattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|21 : ATACTCAGTTGAGAAAG-AAAG----TGTGCA-CTTAAAATT-T-TC-AAA-TG--T-------------CTTCTATTCTATTTATAG
gi|3 : GTATACTCAGTTGCAAAAG-AAAA----TGGGCA-CTTTTAAAT-T-TC-AAA-TA--G-------------TTTATATTGGATTTATCGTACA-G-TGAT-TATT---C-TCT-TACATT-TGCA-TGA----ACACACGGA-TCCT--AATTGAT-AAG---T-AGGCCTATTATGCGAAAAA-C-AAA--GGACGC-CGTGACATTGACA---ATAGAATGATGAA--TATTTGG--ATACC---AC---ATATGACAT--T-TTTATTC-TATAGTTTATA--CAATTAAT-TT-AACA--AAAT-----ACTCAGTGCACTATTTCTTTTACAACGG
gi|4 : cCTCAGTTGCAAA-G-AAAG----TGTTCAACTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTGTTCTATTTATAGTAAAAG-TAAA--ATA---A-ATT-TACATC-CGCA-TGTCTGTGTGCAAGGA-TCTTA-A-TC-----AA---TCA--------ATAC-TAAAA-T-AAA--TAA----------ATTG-----------ATGA--AA---ATTTTG--ATACC---AC---ACTTAACGT--G-TTTCTTT-AAGAATTTATAGTTAAGTAGT-TT-AACA--GAAA-----CTTCAGTGTACACTTcga
gi|5 : TATACTCAGTTGCAAAGG-AAAATGACTGTGCA-CTTTTAAAT-TCTC-GAA-TAATT-------------TTTTTATTATATTTAAAGTACA-G--G---TATA---T-TTT-TACATC-TTCA-T-----------CAGA-TTTT--A-T---T-AAA---------------------------AAA--TGACAC-CATGTCATTGGCA---ATAGAATGACGAA--AACTTGA--A---C---AC---AT-TTACAT--TATTTTTTT-Taatattgtgattgattatatactagca
gi|6 : aatatctctcatcacatgggtcgcacacataatacagaaaTATACTCTGTTGCAAAAG-AACA----TGTGCA-TTTTTAAACAT-GC-TAA-TA--TATATATATGTGTGTTTTT-TTTTATTTGCAGT----G-TAAT-TCTTTTAC-TTT-TACTTC-TAAA-TGA----ACACATGGA-TTTT--A-TTGGC-AAA---T------------------------------ACAT-TCTGACGTCAGCA---ACAGCGTGATGAA--CATT------TAC------------TG-----------ATTT-CAAA------A--CTACT--T-TT-AACA--AAGA-----GCTTAGTGCGCACTTTCTTTTGCAAtccaacta
gi|7 : TATAGTCAGTTGCAAAAA-TAAG----TGTACA-CTTTTAAAT-T-TC-AGA-TA--T-------------TTTCCATACTATTTATAGCACATG-TG---TAGT---T-TGTATA-ATT-TTTA-TCA----ATACG-GAA-CCTC--A-TCGGT-AAA---T-A--------CTG----AAA-C-AAA--TAAAGT-GATGACACT
gi|8 : atttagaagaatcattgtttttatttatcaataataACACAGTTGCT---G-AAAG----TGTACA-CGGTTGAAG-T-TC-AAA-TA--A-------------TTTCTATTTCATTTATAGTGCA-G-GTAT-GATT---A-TTT-TACATC-TTCA-TGA------ACACGGATTTTT--A-GCGGT-AAA---A-A--------AT----GAAA-C-CAA--T-ACAT-CGTGACATTGGCA---ATAAAATGACGGA--TAATTGGTAATACA---AT---AAATAA-AT--T-TTTAtctcatactatatgcacctaac
gi|9 : TT---C-TTT-TACATC-TACA-TAA----ACACACGAT-TCTTT-A-TC-----------------------------AA-C-AAA--T----C-CG--GCATTGGCG---ATGGATTGGTGAG---ATT--G--ATAAC---AGTAAACGTGAC----C-TTTACTT-TA-AATATATA--CAACTAAT-TT-AACA--AAAAAAAAA----AGTGCACCCTTTTTTTTACAAC
gi|9 : ttatatGTATATCCAGTTGTAAAAA-AAAG----GGTGCA-CTTTTtggatatacaa
blockSeqs : A T TGAC A A A . A AT ATATATATGTGTG A TAATTCTTTTAC C A T CTGTGT C T C AATTGATAAGTAGGCCTATTATGCGA CC . G CAGA CAC T AAT TGGTA C AGTAAACG ATT ACAA A T GT A A TC AAAAA C T
blockSeqs : A . . . . C . . . . A ACATGTTTC A . . AC C . C GATTGGTCAAAACTTAATATA C . G CCC . C T TAT T TAATA TA TAC A T . . . . C C T
blockSeqs : A . . . . . . . . . T GTATACTAC . . . TT A . A TGTTCCGTAAATACTA C . G CTA . C T TTG T ATGAA T TAG A A . . . . C A T
blockSeqs : A . . . . . . . . . . CTATACCTA . . . AT T . C GTTTAGTTAATACTA C . G CAC . A T TTG T AAACA G TAA A A . . . . C C C
blockSeqs : C . . . . . . . . . . TGATTATTC . . . AG T . C AATCAATCAATACT C . G CGC . T T TTG T ATTTA A TAT G T . . . . C C C
blockSeqs : A . . . . . . . . . . GTATGATTA . . . AC C . T ATCGGTAAATACTG T . G CAC . C A TTT T ACATA A AAG A T . . . . A C T
blockSeqs : A . . . . . . . . . . ATATACTT . . . AC A . T AGCGGTAAAAAAT C . A CAT . T C TGG T ACACT T CAA A A . . . . C T C
blockSeqs : A . . . . . . . . . . TATACTCA . . . AC C . C ATTGGCAAAT C . G AGT . C T TTG T ATAAA G TA . . . . . . G . C
blockSeqs : A . . . . . . . . . . TAAAATAA . . . AT T . T ATTATACTG C . A CAT . T . TGA T ACAT T T . . . . . . . . .
blockSeqs : A . . . . . . . . . . TGTAGTT . . . AC C . C ATTAAA . . . AC . . . G . ACAT C
blockSeqs : G . . . . . . . . . . GTATAT . . . . C . . TATC . . . C . . . . .
blockSeqs : A . . . . . . . . . . G . . . . . . . . . .
blockSeqs : A . . . . . . . . . . . . .
blockSeqs : A . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqCons : ATCGGTAAATACTA******************* C** ** ANANA****** TAN*
originalCons : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TACATC-TACA-TGA----ACACACGGA-TCTT--A-TCGGT-AAA---T-A--------ATAC-AAAAA-C-AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC---AC---ATATGACAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
finalCons : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TACATC-TACA-TGA----ACACACGGA-TCTTATCGGTAAATACTA-------------------AAAAC--AAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACCANANA------TGACAT--T-TTTATTTTAN-AATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
Alignments
lowQualScore : 1111111111111 444444444444444 33333333333333333333333333333 111 1111111 1111 111111
lowQualScore : 2 2 4444 2 2 5 2 2 33 3333333333333 8 333333333333333 2 2 2 2 777777 3 3 2 11111111111111111111111111111 33 2 4444 555 0 2 000 88888 1 3 2222222 0 3 0000 6666 1 3 55 4 4 55 111111 4 1
lowQualScore : . . .... . . . . . .. ............. . ............... . . . . ...... . . . ............................. .. . .... ... . . ... ..... . . ....... . . .... .... . . .. . . .. ...... . .
lowQualScore : 7 2 7777 2 5 0 7 7 77 8888888888888 0 999999999999999 9 9 9 9 000000 3 1 3 55555555555555555555555555555 99 1 9999 888 5 6 000 22222 7 3 3333333 8 1 5555 4444 3 8 55 0 0 55 666666 1 4
consensus : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TAC-ATC-TACA-TGA----ACACACGGA-TCTT--A-TC-GGTAAATA---CTA--------AAAACAAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC-AN---ACATGA-CAT--T-TTTATTT-TAGAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
Reference ( family-1249 ) : NGTATACTCAGTTGCAAAAG-AAAG----TGTGCA-CTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTATTCTATTTATAGTACA-G-TGAT-TATT---C-TTT-TAC-ATC-TACA-TGA----ACACACGGA-TCTT--A-TC-GGTAAATA---CTA--------AAAACAAA--TGACAC-CGTGACATTGGCA---ATAGAATGACGAA--TATTTNG--ATACC-AN---ANATGA-CAT--T-TTTATTT-TANAATNTATA--CAACTAAT-TT-AACA--AAAA-----CCTCAGTGCACACTTTCTTTTGCAACGG
gi|1 : CTCAGTTGCAAA-G-AAAG----TATGCA-CTTTTTAAT-T-TCCAAA-TA--T-------------TT-CTAGTTTAATTATAGTTCA-GGTG-T-AATT---C-TTT-CAC-AGA-TAAC-TGA----AC-----------T--G-T----TAAATA---CAA--------AAAACAAAAATGACAC-AATAACAT-GGAG---A-AAAATACCACA--CATTAAA--ACATTTAA---ACATAAACAT--T-TTTGTTT--AGAGTCTATA--CACCTAAT-TT-AACA--AAAA-----TCT-AGTGCACATTTTC-TTTGCAAC
gi|1 : atatatgttATACACAGTTGCAAA-G-AAAA----TGTGCA-C---TAGAT-T-Ttgtgtatctattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|10 : atatatgttctcagttgcaaagaaagtatgcactttttaatttccaaatatttctagtttaattatagttcaggtgtaattctttcacagataactgaactgttaaatacaaaaaacaaaaatgacacaataacatggagaaaaataccacacattaaaacatttaaacataaacatttttgtttagagtctatacacctaatttaacaaTTTTAAAT-C--C-AAA-TA--T-------------GATCTCTTCTATC-ATAGTACA-T-ACAT-GTTT---C-CAT-TAC-ATC-TGCA-TGA----ACACACGGA-TCTTTGT-TC-CGTAAATA---CTA--------AAAACAAC--CGACCC-CGTGACATTTACACACATTGTAT-ATTAG--TATTTAT--ACACC-TA---ATATAG-CActattagcatattcacgataataatacagcaataaaatgaaaatttaacaatttgaatattttattttcgaaggtcctccaatattccaa
gi|11 : TACTTGGTTACAAAAG-AAAG----AAGACG-CTTTTAAAT-T-CC-AAAATA--T-------------TTTCTGTTCTATTTATAGCACA-G-GTA--TACTA--C-TTT-TAG-GTC-TACA-TAT----TTACACAGA-T
gi|12 : aatacctctgattaatagacacaatatgaacacaatatataaatataatt-CAT--T-TTAATATACAAAATTTATA--CAACTTAT-AT-TACT--AAAA-----CCTCGGTGTAAATTTTCTTTTACAACat
gi|12 : acTAGACTCAGTTGTAAAAG-AAAA----TTTACA-Ctgagtctattataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|13 : accattttaatatacaaaatttatacaacttatattactaaaacctcgTATACTCAATTGCAAAAG-TAAG----TGTATA-CTTC-ACAT-T-TC-AAT-TA--T-------------TTTCTGTTCTATTAATAGAACA-G---ATATACT---T-TTTCTAC-ATC-TACATTTT----ATACAAGGA-TCTTG-A-TT-GGTCAAAA---CTT--------AATATAAA--Tttataaaaaaaactattcttaacatatatacaaagttacattttaagaagatttgacgttgagtgttatcacc
gi|14 : attttcatcaggcattcGTAAACA----TA--------CAAA--AG--TGACAGATGTGATTTTAACA---ATAGAATGACGAA--TATTTTG--ATACC-AT---GAATGG-CAT--G-TTTACTT-TACAATTCACG--CAAATAAT-TT-GACATCAAA----------AGTGTACATCATTTTTTTCAAa
gi|15 : atATA---CAA--------AAACCAAA--TGACTA-CGTAACATTCGCA---ATAAAATGACGA---TATTTTG--ATACC-AC---A--TGA-CATATT-TTTATTT-TAGAATATATG--CAACAACT-TTAAATA--AAAA-----CCTCAATGTATGCTTTCTTTTGCAACaatcggtttataga
gi|16 : TATATTTAGTTGCAAAAT-AAAG----TGCGCA-CTTTTAAAT-TATT-AAA-TA--T-------------TTTCTATATAAATTAAAGTACA-G-tgaataaagttt
gi|17 : atttaaagaaaatgtattatttacagttctgtct-------------TTTATATTTTATTTATAGCGGAAG-TA---TACT---CATTT-TAC-TTAATATA-TGA----AGACATGCA-TATT--G-TTTAGTTAATA---CTA--------AAACCAAA--TGACAC-CGTGACATTGGTA---ATAgtgtag
gi|18 : ATTTTG--ATACC-AA---ACATCA-TGT--A-TTTCTGT-TAAAAGATATA--TA--TAAGATT-AACA--AAAA-----CCTAAGTG-ACACTTTCTTTTGCAACAG
gi|19 : CAGTTGAGAACG-AAAA----AGTTCA-CTTTTGAAT-T-TC-AAA-TA--C-------------TTTCTATACTATCTATAATACA-G-agttt
gi|2 : acCTCAGTTTCAAAAGTAAAG----TGTGCG-TTTTTAAAT-T-GC-AAA-TG--T-------------T--CTATTTTATTTATAGCACA-G--G------------------------TACA-TGG----ACACATGGA-T--T--A-TT------ATA---CTG--------AAACCAAA--TGA-AC-CGGTTTATTGGAA---AAAGAA-AAAGAAAATATTTTT--A-ACC-AT---TTATAG-CAT--A-TTAATGT-T------TATA--CAACCAAT-TT-AACG--AAAG-----CTTCGGTGCACAATTTCTTTTGCGACatatataattaa
gi|2 : atgtttatttcTACTCAGTCGCAAAAG-AAAT----TGTGCA-Ctgagtaattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|20 : atgtttatttcctcagtttcaaaagtaaagtgtgcgtttttaaattgcaaatgttctattttatttatagcacaggtacatggacacatggattattatactgaaaccaaatgaaccggtttattggaaaaagaaaaagaaaatatttttaaccatttatagcatattaatgtttatacaaccaatttaacgaaagcttcgTTGCAAGA----AG----TGTCAA-CTTTT-----T-T---AA-TA--T-------------TCTCTATTCTATTTATAGTAGA-G-CTAT-ACCT---A-TTT-TAC-ATC-TACA-TGattagatagataaaatatttcaatacattgacataaacacttatcacgacgcaattcaagattgactatttcactgacagtctttaattatattgcaa
gi|21 : ATACTCAGTTGAGAAAG-AAAG----TGTGCA-CTTAAAATT-T-TC-AAA-TG--T-------------CTTCTATTCTATTTATAG
gi|3 : GTATACTCAGTTGCAAAAG-AAAA----TGGGCA-CTTTTAAAT-T-TC-AAA-TA--G-------------TTTATATTGGATTTATCGTACA-G-TGAT-TATT---C-TCT-TAC-ATT-TGCA-TGA----ACACACGGA-TCCT--AATT-GATAAGTAGGCCTATTATGCGAAAAACAAA--GGACGC-CGTGACATTGACA---ATAGAATGATGAA--TATTTGG--ATACC-AC---ATATGA-CAT--T-TTTATTC-TATAGTTTATA--CAATTAAT-TT-AACA--AAAT-----ACTCAGTGCACTATTTCTTTTACAACGG
gi|4 : cCTCAGTTGCAAA-G-AAAG----TGTTCAACTTTTAAAT-T-TC-AAA-TA--T-------------TTTCTGTTCTATTTATAGTAAAAG-TAAA--ATA---A-ATT-TAC-ATC-CGCA-TGTCTGTGTGCAAGGA-TCTT--AATC-AATCAATA---CT---------AAAATAAA--TAA----------ATTG-----------ATGA--AA---ATTTTG--ATACC-AC---ACTTAA-CGT--G-TTTCTTT-AAGAATTTATAGTTAAGTAGT-TT-AACA--GAAA-----CTTCAGTGTACACTTcga
gi|5 : TATACTCAGTTGCAAAGG-AAAATGACTGTGCA-CTTTTAAAT-TCTC-GAA-TAATT-------------TTTTTATTATATTTAAAGTACA-G--G---TATA---T-TTT-TAC-ATC-TTCA-T-----------CAGA-TTTT--A-T----TAAA---------------------AAA--TGACAC-CATGTCATTGGCA---ATAGAATGACGAA--AACTTGA--A---C-AC---AT-TTA-CAT--TATTTTTTT-Taatattgtgattgattatatactagca
gi|6 : aatatctctcatcacatgggtcgcacacataatacagaaaTATACTCTGTTGCAAAAG-AACA----TGTGCA-TTTTTAAACAT-GC-TAA-TA--TATATATATGTGTGTTTTT-TTTTATTTGCAGT----G-TAAT-TCTTTTAC-TTT-TAC-TTC-TAAA-TGA----ACACATGGA-TTTT--A-TT-GGCAAAT---------------------------ACAT-TCTGACGTCAGCA---ACAGCGTGATGAA--CATT------TAC----------TG------------ATTT-CAAA------A--CTACT--T-TT-AACA--AAGA-----GCTTAGTGCGCACTTTCTTTTGCAAtccaacta
gi|7 : TATAGTCAGTTGCAAAAA-TAAG----TGTACA-CTTTTAAAT-T-TC-AGA-TA--T-------------TTTCCATACTATTTATAGCACATG-TG---TAGT-----TTG-TATAATT-TTTA-TCA----ATACG-GAA-CCTC--A-TC-GGTAAATA---CT---------GAAACAAA--TAAAGT-GATGACACT
gi|8 : atttagaagaatcattgtttttatttatcaataataACACAGTTGCT---G-AAAG----TGTACA-CGGTTGAAG-T-TC-AAA-TA--A-------------TTTCTATTTCATTTATAGTGCA-G-GTAT-GATT---A-TTT-TAC-ATC-TTCA-TGA------ACACGGATTTTT--A-GC-GGTAAAAA---AT---------GAAACCAA--T-ACAT-CGTGACATTGGCA---ATAAAATGACGGA--TAATTGGTAATACA-AT---AAATAA--AT--T-TTTAtctcatactatatgcacctaac
gi|9 : TT---C-TTT-TAC-ATC-TACA-TAA----ACACACGAT-TCTTT-A-TC-------------------------AACAAA--T----C-CG--GCATTGGCG---ATGGATTGGTGAG---ATT--G--ATAAC-AGTAAACGTGA-C----C-TTTACTT-TA-AATATATA--CAACTAAT-TT-AACA--AAAAAAAAA----AGTGCACCCTTTTTTTTACAAC
gi|9 : ttatatGTATATCCAGTTGTAAAAA-AAAG----GGTGCA-CTTTTtggatatacaa