lowQualScore : 222222222222222222222222222222
lowQualScore : 1 1 111111111111111111111111111111 555 1 77777777 111 33333333 44444444444 33333 1 1 1 3333 7777777777 1 11111 1 11 333 22222 22 333 1 1 11
lowQualScore : 7 5 000000000000000000000000000000 4 6 6 6 222 5 22222222 777 6 11111111 4 44444444444 3 66 4 33 5 55555 66 1 9 1 5 3 0 0000 66 3333333333 4 5 3 555 1 33333 6 2 4 0 5 99 2 555 2 6 44444 7 4 2 11 6 444 7 7 33
lowQualScore : . . .............................. . . . . ... . ........ ... . ........ . ........... . .. . .. . ..... .. . . . . . . .... .. .......... . . . ... . ..... . . . . . .. . ... . . ..... . . . .. . ... . . ..
lowQualScore : 0 0 000000000000000000000000000000 0 0 0 0 000 0 55555555 555 5 88888888 6 11111111111 5 00 6 66 7 99999 77 7 2 0 0 2 0 2222 22 8888888888 0 6 6 000 8 99999 2 2 0 8 0 33 5 000 5 0 00000 7 0 5 00 0 000 0 0 00
consensus : AAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGAGTTCAGATTGCTCGTTCAGATTGCTCGTTACGAGCAATCTGAACNCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGGAAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAAT--A---TAAAAATCCATCA--NG-A--TT-ATCCATGTGGGATAGAAANAT-CTCACCC-GNGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCA-GGG--ACGAGGCTCTGCC--TCG-AGTT-CCCTGCATGTAATTTT-GACC--CAGAGGGTGAGATN---TTTTCTATCCCACANGGATGAACNCGTGATGGACTTTTTTTTNTCCCAAATTTNATCCCAGTCAAATGATAGA-TCTTCGNTAANGNCTGTCATCACAAAAATAGTCTTCTTTTTAAACGNGTGTTTA
Reference ( gi|2 ) : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAG-------------TGT-----------G--ACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGGAAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAAT--A---TAAGAATCCATCA--AG-A--TT-ATCCATGTGGGACAGAAATAT-CTCACCC-ATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCA-GGA--TCGAAGCTCTGCTAATTA-AGTT-CCCTGCATGTCATTTT-GACC--CAGAGGGTGAGATT---TTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTAC
gi|1 : AAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAG-------------TGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGGAAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAAT--GTTCTAAAAAT--AT----------TT-ATCTAT
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagGAAAACAGTGCAGGAAGAGTTCAGATTGCTCGT-----------A--ACGAGCAATCTGAACACTTCCTGCACTGTTTTCaattaggtata
gi|7 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagaaagcatttattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtgAAAA--------AAAATAAA---A-AATCAA---AAAAAATCCATCA--TGTG--TTGATAAATGAGGGACAAGAATAG-CTCACCCTAT-TGGTTAGAATTTCATGAAGGGATGAGGCTCaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|3 : taATGGG---AGAA--------AACAATCCATCA--GG-AGTTC-ATCCTTGTGGGATAGGAAAAT-CTCACCT----GGATCAAAATTACATGCAG
gi|9 : ---AGAAC--A---TAAGAAACCAGCA--TG-A--GT-ATTCAT------------TAC-CTCGCCA-GAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtaatctcagtcaaatgatagaccctcgttaaaggctgtcattacaaaaaagtcttctttttaaaccagtgtttaatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : g--A---TAGAAATCTATCATTAG-A-----ATTT-TGTGTGATAGAA-TATACTCACAC-TTTTGATCAAATTTACATGCAGAGACAAGACTCTGCC
gi|12 : -ATCCATTTAGGATAGAAAAAT-CACATTCTGTGGGCCTGAAAT-ACATGCACGGAAGAGGCTCTaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|6 : AGAAATAT-TTCATCC-GAGGGGTCAAAATTACACACAGG-----------GTC-AC-TGTA-GGG--AAGAGGCCC----------AATT-TCCTGCATGTAAAATT-GATCAGCA-AGAGTGAGACA---TTTT
gi|16 : AAAAAT-CTCACCC-TCTTGGTCAAAATAACATGCAGG
gi|13 : ggatctgccgagttcCGTGCACGGACGAGGCTCTGTCGACATGCACGGA---CGAGGCTCTG----TCG-AGTT-C
gi|4 : ACATGCA-GAG--ACAAGACTCTGCCAA-----GTT-CCGTGCA----ATTTT-AACC--AAGAGGGTAAGA-T---TTGTCTAT
gi|6 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttACATGCA-GGAAATTGGGCCTCTTCC--CTACAGTGACCCTGTGTGTAATTTT-GACC--CCTCGGATGAAATA---TTT
gi|11 : agTCA-AATC-CCTTGCA----ATTTT-GACC--GAGAGGGTGAGA-T---TTGCCTATTCCTTAAGGATGAAaaaattgatcagcaagagtgagacatttt
gi|16 : gacacgcctttg-AGTT-CCCTGCATGTTATTTT-GACC--AAGAGGGTGAGATT---TTT
gi|19 : ggatctgccg-AGTT-CCCTGCATGTTATTTT-GACC--CAGA
gi|12 : cgTT-CCGTGCATGT-ATTTCAGGCC--CACAGAATGTGA-T---TTTTCTATCCTAAATGGAT
gi|7 : T-CCCTTCATGAAATTCT-AACC--AATAGGGTGAGCTA---TTCT-TGTCCCTCATTTATCAACACATGATGGATTTTTTTTgaggctct
gi|4 : taaaaaaaaataaaaaatcT-CTCTGCATGTAAATTT-GATC--AAAAGTGTGAG-TA---TATTCTATCACACAtgaggctc
gi|3 : atagaaatctatcattagaatttCTGCATGTAATTTT-GATC--CAG---GTGAGATT---TTC-CTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAA-AGTCTTCTTTTTAAACCAGTGTTTAcaagactctgccaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : GCATGCAATTCT-T-CC--CTGAGGATGAAATT---TTT-CTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTTTAATatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|14 : C--CAGAGGGTGAGATCAAGTTTGCTATCACACACGGATGAACTCGTGATta
gi|10 : taagAGACTCT-TGCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 22222222222222222222222222222
lowQualScore : 44444444444444444444444444444 33333 11 2222222 111 111111 1111111 1111 2222222 2222 333 1 1 1
lowQualScore : 4 3 88888888888888888888888888888 3 1 6 7 33333 77 6666666 777 6 999999 4444444 66 1 6 1 5 6 22 2 5 1111 0 2 1 0 3 9999999 1 55 55 6666 1 1 4 99 1 777 1 0 0 2 1 1 1 7 5 0 1
lowQualScore : . . ............................. . . . . ..... .. ....... ... . ...... ....... .. . . . . . .. . . .... . . . . . ....... . .. .. .... . . . .. . ... . . . . . . . . . . .
lowQualScore : 0 0 00000000000000000000000000000 0 0 7 3 33333 33 3333333 555 5 000000 1111111 00 8 7 0 7 7 00 2 0 2222 2 5 0 6 2 6666666 9 77 55 1111 0 0 6 88 0 777 0 7 0 0 0 0 0 3 0 7 0
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGAGT----------TGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAAT--A---TAAAAATCCATCATG-ATT-ATCCATGTGGGACAGAA-ATATCTCA-CCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAGAT----TTTTCTATCCCACANGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGAGTTCAGATTGCTCGTTCAGATTGCTCGTTACGAGCAATCTGAACNCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAAT--A---TAAAAATCCATCANG-ATT-ATCCATGTGGGATAGAA-ANATCTCA-CCCGNGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAGATN---TTTTCTATCCCACANGGATGAACNCGTGATGGACTTTTTTTTNTCCCAAATTTNATCCCAGTCAAATGATAGA-TCTTCGNTAANGNCTGTCATCACAAAAATAGTCTTCTTTTTAAACGNGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAG-------------TGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAAT--GTTCTAAAAAT--AT------TT-ATCTATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAaattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAGAT----TTGCCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : -ATCCATTTAGGATAGAA-AAATCACATTCTGTGGGCCTGAAA-TACATGCACGGAAGAGGCTCT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTC
gi|14 : CCAG--AGGGTGAGATCAAGTTTGCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAGATT---TTT
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGA--AGT------------------------GTGACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAAT--A---TAAGAATCCATCAAG-ATT-ATCCATGTGGGACAGAA-ATATCTCA-CCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAGATT---TTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAGAT----TTTCCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAA-AGTCTTCTTTTTAAACCAGTGTTTAc
gi|4 : --A---TAGAAATCTATCATT-AGA-ATTT-TGTGTGATAGAATATA-CTCA-CACTTTTGATCAAATTTACATGCAGAGACAAGACTCT------------------------GCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAGAT----TTGTCTATatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|5 : GCATGCAATTCTT-CCCTG--AGGATGAAAT----TTTTCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT
gi|6 : AGAA-ATATTTCA-TCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACA---TTTTtaatta
gi|7 : TAAAAAAAAATAAA---A-AATCAA---AAAAAATCCATCATGTGTTGATAAATGAGGGACAAGA-ATAGCTCA-CCCTATTGGTTAGAATTTCATGAAGGGATGAGGCTC
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAGCTA---TTCT-TGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAAC--A---TAAGAAACCAGCATG-AGT-ATTCAT-------------TACCTCG-CCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 1111111111111111
lowQualScore : 0000000000000000 33333 11 55555555 222 111 11 1 1111111 1 2222222 222 1 111 1
lowQualScore : 1 1 6666666666666666 1 6 7 33333 44 22222222 333 777 33 0 0 3 0 7 1111111 0 7 11 22 0 6 3 5555555 0 3 55 55 4 8888 1 1 99 333 0 999 0 3 0 3
lowQualScore : . . ................ . . . ..... .. ........ ... ... .. . . . . . ....... . . .. .. . . . ....... . . .. .. . .... . . .. ... . ... . . . .
lowQualScore : 0 0 5555555555555555 0 7 3 33333 33 55555555 333 555 88 0 2 0 7 3 7777777 0 0 22 22 8 7 2 7777777 8 4 00 55 0 5555 0 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAG---TGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAATA---TAAGA--ATCCATC-ATGANTATTCATGTG-GACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--A-T----TTTTCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGAGTTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAATA---TAAAA--ATCCATC-ATGATTATCCATGTGGGACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--A-T----TTTTCTATCCCACANGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAG---TGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAATGTTCTAAAAATATTTATCTATAATTAattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--A-T----TTGCCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--A-T----TTTTCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--A-TCAAGTTTGCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--A-T----TTTT
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAG----------------TGTGACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAATA---TAAGA--ATCCATC-AAGATTATCCATGTGGGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--ATT----TTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--A-T----TTTCCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : A---TAGAA--ATCTATC-ATTAGAATTT-TGTGTGATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--A-T----TTGTCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--A-T----TTTTCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACA-T----TTTta
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--C-T----ATTCTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAACA---TAAGA--AACCAGC-ATGAGTATTCAT-------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 2222222 111 111111 11 2222222 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 6666666 777 6 999999 1 33 444 8888888 0 8 8 44 44 1 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ....... ... . ...... . .. ... ....... . . . .. .. . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 3333333 555 5 000000 0 88 888 0000000 2 0 6 22 22 4 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAAT--A---TAAAAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAAT--A---TAAGAATCCATCATGANT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAAT--GTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAAT--A---TAAGAATCCATCAAGATT--ATCCATG-TG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : --A---TAGAAATCTATCATTAGA--ATTT-TG-TGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : TAAAAAAAAATAAA---A-AATCAA---AAAAAATCCATCATGTGTTGATAAATGAGG-G-ACAAGA-ATAGCTCACCCTATTGGTTAGAATTTCATGAAGGGATGAGGCTC
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAAC--A---TAAGAAACCAGCATGAGT--ATTCAT---------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 55555555 222 111 33333333 1 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 22222222 333 777 7 11111111 0 7 44 0 0 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ........ ... ... . ........ . . .. . . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 55555555 333 555 3 77777777 0 0 22 2 8 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAATA---TAAGAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAATA---TAAAAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAATGTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAATA---TAAGAATCCATCAAGATTATCCATGTG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : A---TAGAAATCTATCATTAGAATTT-TGTGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAACA---TAAGAAACCAGCATGAGTATTCAT--------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 2222222 111 111111 11 2222222 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 6666666 777 6 999999 33 444 8888888 0 8 8 44 44 1 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ....... ... . ...... .. ... ....... . . . .. .. . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 3333333 555 5 000000 88 888 0000000 2 0 6 22 22 4 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAAT--A---TAAAAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAAT--A---TAAGAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAAT--GTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAAT--A---TAAGAATCCATCAAGATT--ATCCATG-TG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : --A---TAGAAATCTATCATTAGA--ATTT-TG-TGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : TAAAAAAAAATAAA---A-AATCAA---AAAAAATCCATCATGTGTTGATAAATGAGG-G-ACAAGA-ATAGCTCACCCTATTGGTTAGAATTTCATGAAGGGATGAGGCTC
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAAC--A---TAAGAAACCAGCATGAGT--ATTCAT---------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 55555555 222 111 33333333 1 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 22222222 333 777 7 11111111 0 7 44 0 0 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ........ ... ... . ........ . . .. . . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 55555555 333 555 3 77777777 0 0 22 2 8 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAATA---TAAGAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAATA---TAAAAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAATGTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAATA---TAAGAATCCATCAAGATTATCCATGTG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : A---TAGAAATCTATCATTAGAATTT-TGTGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAACA---TAAGAAACCAGCATGAGTATTCAT--------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 2222222 111 111111 11 2222222 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 6666666 777 6 999999 33 444 8888888 0 8 8 44 44 1 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ....... ... . ...... .. ... ....... . . . .. .. . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 3333333 555 5 000000 88 888 0000000 2 0 6 22 22 4 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAAT--A---TAAAAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAAT--A---TAAGAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAAT--GTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAAT--A---TAAGAATCCATCAAGATT--ATCCATG-TG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : --A---TAGAAATCTATCATTAGA--ATTT-TG-TGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : TAAAAAAAAATAAA---A-AATCAA---AAAAAATCCATCATGTGTTGATAAATGAGG-G-ACAAGA-ATAGCTCACCCTATTGGTTAGAATTTCATGAAGGGATGAGGCTC
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAAC--A---TAAGAAACCAGCATGAGT--ATTCAT---------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 55555555 222 111 33333333 1 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 22222222 333 777 7 11111111 0 7 44 0 0 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ........ ... ... . ........ . . .. . . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 55555555 333 555 3 77777777 0 0 22 2 8 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAATA---TAAGAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAATA---TAAAAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAATGTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAATA---TAAGAATCCATCAAGATTATCCATGTG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : A---TAGAAATCTATCATTAGAATTT-TGTGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAACA---TAAGAAACCAGCATGAGTATTCAT--------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 2222222 111 111111 11 2222222 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 6666666 777 6 999999 33 444 8888888 0 8 8 44 44 1 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ....... ... . ...... .. ... ....... . . . .. .. . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 3333333 555 5 000000 88 888 0000000 2 0 6 22 22 4 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAAT--A---TAAAAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAAT--A---TAAGAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAAT--GTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAAT--A---TAAGAATCCATCAAGATT--ATCCATG-TG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : --A---TAGAAATCTATCATTAGA--ATTT-TG-TGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : TAAAAAAAAATAAA---A-AATCAA---AAAAAATCCATCATGTGTTGATAAATGAGG-G-ACAAGA-ATAGCTCACCCTATTGGTTAGAATTTCATGAAGGGATGAGGCTC
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAAC--A---TAAGAAACCAGCATGAGT--ATTCAT---------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
blockSeqs : A G G G T . CA . . G CAA TG AAA GTGTG T T TT CA A G A CTAATTA A CA AC CAAG T T AT AAT . TGA T C
blockSeqs : G T . T . G A . TCA GAGGG . G GA CA A . A CCTCA T . . . . T A . . CGT . A
blockSeqs : . . A . TT . . C TA TA T . CCTC T . . . . A C . .
blockSeqs : A . . GA GA T TCG C . . . . A
blockSeqs : CCG A . . . .
blockSeqs : CCA A . . . .
blockSeqs : . A . . . .
blockSeqs : A . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : A*****
originalCons : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAAT--A---TAAAAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
finalCons : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAATA-----TAAAAATCCATCATGAGT--ATTCATG-TG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA
Alignments
lowQualScore : 44444444444444 33333 11 55555555 222 111 33333333 1 2222222 222 1 111 1
lowQualScore : 1 1 99999999999999 6 7 33333 44 22222222 333 777 7 11111111 0 7 44 0 0 6 3 5555555 0 3 55 55 8888 4 0 1 99 333 0 999 0 3 0 3
lowQualScore : . . .............. . . ..... .. ........ ... ... . ........ . . .. . . . . ....... . . .. .. .... . . . .. ... . ... . . . .
lowQualScore : 0 0 55555555555555 7 3 33333 33 55555555 333 555 3 77777777 0 0 22 2 8 7 2 7777777 8 4 00 55 5555 0 6 4 88 333 0 888 7 3 7 7
consensus : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGA---AGAATA---TAAGAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGNGGGGTCGAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
Reference ( family-1245 ) : AAAGCATTNATTCACCACGTATCAGCAATNGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTNACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAN-CGTATCTATGGAGTAAAGGGTTAAAGTCTA-AGAAAGATGGA---AGAATA---TAAAAATCCATCATGAGTATTCATGTG-G-ACAGAA-ATATCTCACCCGAGGGGTCAAAATTACATGCAGGGACGAGGCTCTGTCGACATGCAGGGACGAGGCTCTGCC--TCGAGTTCCCTGCATGTAATTTTGACCCAG--AGGGTGAG--AT----TTT-TCTATCCCACATGGATGAACTCATGATGGACTTTTTTTTCTCCCA---TTCATCTCAGTCAAATGATAGA-TCTTCGNTAATGGCCGTCATCACAAAAATA-TCTTCTTTTTAAACGCGTGTTTA
gi|1 : AAATGCTTTCTAT-ATTAG---AGGTGTCCAAAGG-CGTCTTTATGAAGTAAAGGGTTAAAG
gi|1 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactAAAGCATTTATTCACCACGTATCAGCAATTGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGTTCAGATTGCTCGTTACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGGCCTTCTGTGATTGGTGCAGG-----AAAAT-CGTATCTATGGAGTAAAGGGTTAAAGTCTATAGAAAGATGGATTGAAAATGTTCTAAAAATattcaccacgtatcagcaattggtgaattatgtttatattaactgacagagtggaaaacagtgcaggaagtgttcagattgctcgttacgagcaatctgaactcttcctgcactgttttcaaaggccttctgtgattggtgcaggaaaatcgtatctatggagtaaagggttaaagtctatagaaagatggattgaaaatgttctaaaaatatttatctataattaggtata
gi|10 : aagcaagaggaaactctattgtggaagcagcataagccatatagaagtctgtaggttacactaatttatttaagctgaaatcttataatatgaacccctcttgtgtccacttcctgagtagaactagtactgaatgctggttttaagcggcatcgggacgagctgcggattgaacctgcaacctctggcgtgagcggcaaacactctatcaactatactacagccactctttaaccctttacttcataaagacgcctttggacacctctaatatagAGACTCTT-GCTAATGTCTGTCATCACAAAAATA-TCTTCTTTTTAAATGTGTGTTTAatttatctataattaggtata
gi|11 : GACACGCCTTTG----TCAAATCCCTTGCA----ATTTTGACCGAG--AGGGTGAG--AT----TTG-CCTATTCCTTAAGGATGAAacatgcaaaatttcacata
gi|12 : GCC--TC---TTCCGTGCATGTATTTCAGGCCCAC--AGAATGTG--AT----TTT-TCTATCCTAAATGGAT
gi|13 : CGTGCACGGACGAGGCTCTGTCGACATGCACGGACGAGGCTCTG----TCGAGTTCtct
gi|14 : CCAG--AGGGTGAG--ATCAAGTTT-GCTATCACACACGGATGAACTCGTGAT
gi|16 : taagGGATCTGCC----GAGTTCCCTGCATGTTATTTTGACCAAG--AGGGTGAG--AT----TTT-T
gi|19 : CGAGTTCCCTGCATGTTATTTTGACCCAG--A
gi|2 : AAAGCATTAATTCACCACGTATCAGCAATGGGTGAATTATGTTTATATTAACTGACAGAGTGGAAAACAGTGCAGGAAGTGT-------------GACGAGCAATCTGAACTCTTCCTGCACTGTTTTCAAAGACCTTCTGTGATTGATGCGGG-----AAAACATGTATCTATGGAGTAAAGCGTTAAAG--------AAGATGGA---AGAATA---TAAGAATCCATCAAGATTATCCATGTG-GGACAGAA-ATATCTCACCCATGGGGTTGAAATTACATGCAGGTACGAGGCTCTGTCGACATGCAGGATCGAAGCTCTGCTAATTAAGTTCCCTGCATGTCATTTTGACCCAG--AGGGTGAG--AT----TTTTTCTATCCCACATGGATGAACTCATTATGGACTTTTTTTTCTCCCA---TTCACCTCAGTCAAATGATAGA-TCTGTGATAATGGCCTTCACCACAAAAATATTCTACTTTTTTAATGCGTGTTTA
gi|3 : CTGCATGTAATTTTGATCCAG-----GTGAG--AT----TTT-CCTATCCCACAAGGATGAACTCCTGATGGA--TTGTTTTCTCCCA---TTAATCTCAGTCAAATGATAGA-CCCTCGTTAAAGGCTGTCATTACAAAAAAG-TCTTCTTTTTAAACCAGTGTTTAc
gi|4 : A---TAGAAATCTATCATTAGAATTT-TGTGTG-ATAGAATATA-CTCACACTTTTGATCAAATTTACATGCAGAGACAAGACTCTGCCatgcacaaaatttcatatatatacatgaagaaattaatattttaaagtaca
gi|4 : ACATGCAGAGACAAGACTCTGCC----AAGTTCCGTGCA----ATTTTAACCAAG--AGGGTAAG--AT----TTG-TCTATaagttccgtgcaattttaaccaagagggtaagatttgtctat
gi|5 : atagaaatctatcattagaattttgtgtgatagaatatactcacacttttgatcaaatttGCATGCAATTCTT-CCCTG--AGGATGAA--AT----TTT-TCTACCCAACATTAATATACACATGATTG-CTCATTTTTATTCTAAATTTCATTCTAGTCAAATGATAGA-TTTT---TAAT
gi|6 : AGAA-ATATTTCATCCGAGGGGTCAAAATTACACACAGGG-----------TC-AC-TGTAGGGAAGAGGCCC---------AATTTCCTGCATGTAAAATTGA-TCAGCAAGAGTGAGACAT----TTT-ta
gi|7 : GCC--TCA---TCCCTTCATGAAATTCTAACCAAT--AGGGTGAG--CT----ATT-CTTGTCCCTCATTTATCAACACATGATGGATTTTTTTT
gi|9 : taaaaaaaaataaaaaatc---AGAACA---TAAGAAACCAGCATGAGTATTCAT--------------TACCTCGCCAGAGGGGTGAGAATTTCATGTAGGGACGATGCTCTGTCtc
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): ATCGGGACGAGCGTGGAATCGAACATGCGACCTATGACATTAGGTGTAAATCTATCAACTACGTTACCACCTCGCTACCCCTT
Unaligned ( gi|15 ): ATCAAGCATACAACTTCTGGCGTGAGTAGTCAACACTCTTACAACTGTACTA
Unaligned ( gi|17 ): ACTTTTTAAATGCGTGTTCAACGTGCAAAATTTCAGATACATG
Unaligned ( gi|18 ): ATAGAAATCAATCATTAGAATTTTGTGTGATAGAATAA