lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111
lowQualScore : 5555555 6666666666666666666666666666666 11 6666666666666666666666666666666 22 1111 22222222222 11111111 8888888888888 333333333 44444444444 1111 111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222222222222222222222 11 5555555555555555555555555 333333 111 111 11 3333 2222222222222222222222222222 111 1 333333333333333333333333333 11 22222222 1111 1
lowQualScore : 6 6 7777777 2 2 3333333333333333333333333333333 22 7777777777777777777777777777777 1 00 9999 0 77777777777 66666666 33 0 0 9999999999999 111111111 5 0 0 3 44444444444 1 6666 0 3 2 4 666 4 0 777 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8 99999 44 3 3 5 2222222222222222222222 66 6 22 0000000000000000000000000 88888 555555 6 333 2 555 66 55 5 2 2 2 6 33 9999 4444 3 2 2 5 8888888888888888888888888888 44 0 33 333 0 444 66666 8 1 2 2 55555 111111111111111111111111111 2 99 99 3 44 22222222 1111 4 3 3 88888
lowQualScore : . . ....... . . ............................... .. ............................... . .. .... . ........... ........ .. . . ............. ......... . . . . ........... . .... . . . . ... . . ... . ............................................................................................................................................... . ..... .. . . . ...................... .. . .. ......................... ..... ...... . ... . ... .. .. . . . . . .. .... .... . . . . ............................ .. . .. ... . ... ..... . . . . ..... ........................... . .. .. . .. ........ .... . . . .....
lowQualScore : 0 0 0000000 5 5 5555555555555555555555555555555 22 3333333333333333333333333333333 9 77 0000 1 00000000000 11111111 44 9 7 1111111111111 666666666 7 7 1 2 44444444444 3 4444 2 2 5 3 333 0 2 000 0 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 0 11111 66 3 1 3 6666666666666666666666 44 0 44 3333333333333333333333333 88888 777777 2 666 9 666 88 22 6 3 7 5 0 44 7777 0000 5 5 5 8 7777777777777777777777777777 33 9 77 222 6 444 77777 4 1 7 7 77777 888888888888888888888888888 9 77 44 1 88 44444444 7777 0 1 9 33333
consensus : GGGAGGGGAGGTGTCCTTCACAANCCCCCNCTTC-----------A-----ANTAATTGAAACG-ATCNTACGCCTATAA--------ATACA--TNTCA---------AATGAAATTTCTAATGCTATTTCTAACATG--CGCTTGA-----TNT---TGTCATTTC--------TGCCCGCCTGTCTGACAATAT-ATATAT---TC-GTCCGTCCGTCCGTCCGACCG----C-CCGCCCGCCNGTA-GACCG----TCCACCCAAAN-CAACATCCGTCCGTCCNTCCGTCCG-CCCAT---CCAATAGNC--CCG-NCGG-C-CGTCCA---TC-------CATCCAT--C-TA-------TCCGTC-CGA--CATC---CA-------TT-C-A----CCCATCC----AT--CNAT--A------------------TGCA-------ATTT-GGAATGTTATA-----GT--T-TAAAAGAAGC-TGTCACATCCCT----ACT-AAAC-TACTAAACATTTCGTGTTTCACCCCAAAACAACACAACGAAGCACGTT-TTTTT-TTATTCAATCCAAGTCG----ATAAAGACAAAT--CGC-AA-A---T-AGC-GC--AAGCTTCGTGTATNG-CGTCACAAAT-CAAGGGAGGTAA--C-A-ATTTTGCACTTT-G-TAGCCGCAATGTGA-TA-AT--G-CTAG--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-GT-----AAATGTGATAT-T-G--A--GG------------------AAA----GATGC-TTATGTTCAATAATGATATTANTGA-AT-TA-TAAAACGAAAC-A-TTANAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( gi|1 ) : GGGGGGGGGGGT-TCCT-AACAACCCCCCCCTTC-----------A-----AATAAATGAATCA-ATTCTACGCCTATAA--------ATACA--TGTCA---------AATGAAATTTCTGTTGCTATTTCTAACATT--CACTTGA-----TTT---TGTCATTTC--------TGCCTACCTATCTGACAATAT-TTATGTCGATCCGTCCGTCCGTCCGTCCGACAG----C-CCACCCACCAGTA----CG----TCCATCCAAAG-CAACATCCGCCTGTCCGTCTGCCCA-CCCAT---CCAATAGGC--CCA-GCGG-C-TGTCCA---CT-------CATCGAT--C-TT-------TCCATC-CGAA-CATC---CA-------TT-C-A----CCCATCC----AT--CAAT--A------------------TACA-------ATTT-GGAATGTTATA-----GT--T-TAAAAGAAGC-TGTCATATCCCTCCGCACT-AAACATACTAAATATTTCGTATTTCACCCCGAAACAACACAAAGAAGAGCGTTGTTTTTATTATTCAATCTGAGTCG----ATAAAGACAAAT--AAC-AA-A---T-AGT-TC--AATGTTCATGTATTG-CGTCACAAAT-CAAGGGAGATAA--C-A-ATTGTATACTTT-G-TAGCCGCAGTTTGA-TA-AT--G-ATAG--TTT-GA-ATATCAATAA--AA-CGCATTTCGG-A-GT-----AAACGTGACAT-T-G--A--GT------------------AAA----GATGC-TTATGTTCTGTAATGATATTAATGA-AT-TA-GAAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAAT
gi|3 : GGGAGGGGAGGTGTCCTTCACAACCTTCCACTTCTCAGGTCGCCCACCCGCAATAATTGAAATG-AACGTACCCCTATAG--------ATACA--TGCCA---------AATGAAATGTTTAAAGCTATTTCTAACATG--CAC--GA-------------------C--------GGTCCACTCAA--AACAACATATT-------TCTGTCCGTCCGCCCGTCCAATAGGTTGC-CCAGCCGCNNNNN----NN----NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNN-NNNNN---NNNNNNNNN--NNN-NNNN-N-NNNNNN---NN-------NNNNNNN--N-NN-------NNNNNN-NNNN-NNNN---NN-------NN-N-N----NNNNNNN----NN--NNNNNNA------------------TGCA-------ATTT-GGAATGTTATA-----AT--T-TAAACGA-GC-TGCCACATCCCTGCTCACT-AAACAT--------TTCCTTGTTTCACCCCAAAACAACACAACGAAGCACGTT-TT----TTATTCAATCTAAGTCG----ATAAAGACATAT--TG--AA-A---T-AATATCAAAAGGTTTGTGCATGA-AGTCACAAAT-TAAGGGAGGTAA--C-A-ATT-TGCACTGT-G-TATCCGCACTGTGA-TA-AC--GCAAAG--TTT-GA-ATATCAATTA--AA-CGCATTT
gi|16 : cgtatcacaaccaacCAAACCTCCCATT------------A-----ATTAAA--AA--G-ATCCTACGCCTATAA--------GTACA--GATCA---------AATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCCTGCCTGTCTGACAATAT-ATATAT------GTCTGTCCGTACGACCGAC------CACCA-CTGCCTGTACGACCG----TTCATTTAAAA-T-ATATTCTTCAATTCGT----CCG-TCCAT---CCGATAG
gi|7 : ggggaggatggggactgttgtatctgtcCCCACCTCC-----------A-----ACTAT-TGAAACG-ATCCTACGCCTAT----------------------------------GATATTTATGATGCTATTTCTAACATttagcattcccgcccacca
gi|2 : ccctaggttgCCTCCTCC-----------A-----ACTAT-TGAAACG-ATCGTACGCCTAT----------------------------------GATATTTCTAATGCTATTTCCAACATG--AGTTTCA-----TAT---TGTCATTTC--------TGCCTTCCGGCCTGACAATAC-CTA--TC--TCCGTCGGACCGCCCGTCC----A----C-CAACCAACCAGTACGACCG----TCAACCCAAAT-CAGCATCCGGCTGTCCTTCCGTCCA-CATAT---CTAATAGTC--TTT-CCGG-C--ATCCATATTC-------CATCCAT--C-TA-------TCAATT-C-AC-CAAC---CT-------TT-CTA----CCTTTCC----AT--CAATCCA------------------TCCATCCATCCATTTCGGAACGTTATA-----GT--T-GAAGAGAAAC-TGTTACATTCCT----ACTCAAA------AAACATTTCATG-TTCACTTCAAACCAACACAACGTAACACGTT-TTTTT-------AATC-------------AAAGACAAAT--CGA-AATA---T-AGT-GC--AATCTTCGTGAAATG-CATCACAAAT-CAAGGGAAGTAG--C-A-ACTTT-CAATTT-G-TAGCAGCAAT--------AT--G-ATAG----------TATCGATAA--CA-CTCATTTCAG-A-GT-----AAATATGATAT-T-A--A--AG------------------AAA----GATGC-GTATGTTCAAAAATGATATTAATGA-AT-TA-TAAAA-TGAAA-A-TTAAAACTAAACAC-AGTTTCAgagcaatgtccgtctgcccgtccaccaaccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|20 : aggtgtccctttcaacctccccctaggttgaCCCACCTC-----------C-----AATTATTGAA--AGATACTACGCCTATAA---------TACA--TGTTATATATTTGAAATGACATTTTTAATGCTATTTCTAACATG--AGCTTGA-----TAT---TGTCATTTC--------TG
gi|19 : gaggtgtcgctcacaacctcccgctccccaggttgCCCACCTC-----------C-----AATTATTGAAACG-ATAATACGCCTATAATACATGTAATACA--TTTGA---------AATGAAATTTCTAATGCAATTTCTAACATG--AGCTTGA-----TAG---TGTCATTTC--------TG
gi|5 : gtccctcacaacctcccgctcccgtggttgTAA--------ATATAACTTCCA---------AATGGAAGTTCTAATGCTGTTTCTAACATT--CACCTGA-----TGG---TGTACCTTC--------TGCC-AT---TCTGACAATAT-ATACAT------GCCTGTTATTCAGTCCGACCA----C-CAGCACGCCTGTGTGACCG----TCCATCTAAAA-AAACATCCATCCATCCTTCCATTCA-TCCAT---CCATTG------CA-ACGGCC-CGTCCA---TC-------CACCacaat
gi|6 : TT--GACTTGA-----TTT---TGTCATTTC--------TGCCTGCCTACGTGACAATAT-AAATGTT--------TGTCCATCAGTCTGACCG----C-CCACCCACCAGTA----TGACAATCCATCCAAAG-CAACATCCGTCTGTTCATCAGCCAAACCCAT---CCAATAGGC--T---GC---C-TGGCCA--------------TCAAT--C-T-----------ATC-C-----ATC---CA-------TT-C-A----CCCATCC----AT--CCAT--A------------------TGCA-------ATTT-GGAATGTTATA-----GT--T-TAAAAGAAGC-TGTCACATCCCT----ACT------TACTAAACATTTCTTGTTTCACCTCAAAACAACACAACAAAGCACA-TATTT---TTATTCAATCCGAGGCA----ATAAAGACAAAT--AGA-AA-A---T-AGC-TC--AAGGTTCATGTAGTG-TGTCACAAAT-CAAGGGAGGTAA--T-A-ATTTT-CAATTT-G-TAGCCGCAGTGTAG-TA-AT--GCAAAC--TTT-GA-ATACCAATAA--AGTTGCATTTCAG-A-GT-----AAATGTGATAT-T-G--A--GG------------------AAA----GACGtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|7 : A-----TCT---T-TCAATTC---------ACCCACCTATCTGCCTATCC-TTATATCCATCCATCCATCCATaacagttacaactatacacaattccattgcttatgaactt
gi|4 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatgtccgtctgcccgtccaccaaccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccTC--------TGCTTGCCTGTCTGGCAATAT-AAA------------CGTCCGTCTATCCGACCG----C-CCGCCCA----------------TCTAACCAAA---AATATCCACC-GTCCGTCCAGCCG-CTAATATACCAATTTAT--CCA----T-T-TGTGCA---TT-------AATCAAT--TATA-------TCCGTC-TG-----TC---CG-------TT-C-A----TCCATCT----AT--CCGT-----------------------CC-------ATTT-GGAATATTttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|7 : aacgtgtatttgatggtgacttttctgcccgGTCCGTCTGCCCGTCC----A----C-CAACCAACCAGTAGGACCG----TCAACCCAAAT-CAGCATCCGTCTGTCCTTCCGCCCA-CATAT---CTAATAGTC--TTT-CCGG-C--ATCCATAGTC-------CATCCAT--C-TT-------TCAATT-CACC-CACC---TA-------TC-T-G----CCTATCCTTATAT--CCATCCA------------------TCCATCC----ATTTCGGAATGTTATA-----GT--T-TAAAAGACGC-TGTCACGTCCCT----ACT-CAAC-----AAACATTTCATG-TTCACCCCAAACCAACACAACGTAATGCGTTTTTTTTATT--------------------CAAAGACAAAT--CGA-AATA---T-AGA-GC--AATCTCCGTGTAATG-TGTCACAAAT-CAAGGGAGGTAA--C-A-ACTTT-CAATTT-G-TAGCGGCA----------------ATAG----------TATCGATAAGTAA----ATATCGG-A-GT-----AAATATGATAT-T-G--A--AG------------------AAA----GGT-C-GTATGTTCttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|9 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatCCAACCAGT------------CAACCCAAAAACAACATATGTCTGTCCGTCCGTCCA-CATAT---CTAATATATTTCC---CGG-A-AGTCCA---TC-------CATTCAT--C-CA-------TACATC---AA-T-TC---CA-------TTGC-A----TCCATCC----AT--TCAT-----------------------TA-------A-----GGATGTTATA-----GT--T-TAAAAGAAGC-GGTCACATCCCT----ACT-CAAC-----AAACATTTCATATTTCACCCCAAACCAACACAGCGTAGCACAT--TTTTTATT--------------------CAAAGACAAAT----C-GA-AATCT-AGC-GC--ATGGTTCGTGTAATG-CGTCACAAAT-GAAGGGAGTTAA--C-A-ATT-TGCATTTT-G-TAGCGGCAAT---A-TA-AT--A-ATA------------------------------TTCGG-A-GT-----AAATGTGATAT-T-G--AAGGT--------------------A----TATGC-TTATGTTCAAAAATGATATTAATTA-AT-CA-TAAAA-TGAAA-A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAa
gi|8 : CACCCGTA----CG----TCC-TCCAA--------TCCATCCATTCATC----AA-GCCAT---CCA-----C--CCA-TCCG-TATATCCA---TC-------CATCAGTAAC-TTGAAATGTTTTGTCACGAAACATTACGCAGTCTCGTTT-C-AGTGGCACATCA----GT--CAAT--C------------------T-----------TTC-TAAACCTTCTA-----GTAATATAAACGAAGC-TGTCAAATC-------------ACATACTA--------GTGTTATATCCCAAAACAACACACTAAAGCACGTT-----T-TTATTCAATCCAAGTCGACAAATAAAGACGCA-------AA-A---T-AGC-GCA-AACG-TCGTGTATGG-CGTCATAAAA-TAAAGGAGGCAA--T-ATGTTTTATG--TA-G-TTGTTGCAAT---G-TA-AT--G-CTA---TCT-------TTAATAA--AA-CGCAT-------------------ATGATAT-T-A--T--GG------------------AAT----GATGCGTTATGTTCAATTATGACATTAGTGA-AA-TA-TAAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACC
gi|5 : ttcaatccaaattgttggaaACAT--GCCTGTTATTCAGTCCG-ACCA----CCAGCACGC--CTGTGTGA-C-CGTCCAT--CTAAAAAAACATCCAT--C------------CATC-CT-----TC---CA-------TT-C-A----TCCATCC----ATTGCAAC--GGCCCGTCCATCCACCTGCTGCA-------ATTT-GGAATGTTTTT-----GT--T-c
gi|10 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatat---CA-------TC-C-G----TCCGTCC----AT--CAAT--C------------------CGCA-------ATTT-TGAATGTTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|21 : CA-------ATTT-GTAATATTATACATTAGT--T-AAAACGAAGC-TGCCAAATCCCTACCCACT-AAAC---------GTTTCGTGTTTCAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|5 : cacgTATTATG-----GT--T-TAAAAGAGGC-TGTCAacaagtcgataaagacaaattattgttaaa
gi|4 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTGTG-----GT--T-TAGAAGAAGC-TGCCACATAATT----ACT-A-----ACTCACCATTTCGTGTTACGCCCCAAAAT--CAC----AAGAACG-CATTTT--TTAATCAA----AGTCG----ATAAACACAAAT--TGCGAA-A---T-AAC-TC--AAGCTTCCTATATGA-CGTCACAAAT-GAAGGGCGGTAA--CAA-ATTG--CACTTT-G-TACCCACAATGTGA-TACAT--G-CTAG--CTT-AG-GTAT--------------ATT------------------GTGATAC-T-G--A--GG------------------TAA----GATGC-TTATGTT---TAATAA---TAATGATAT-TA-TAAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAcgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|12 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTTATA-----AT--T-TAAAAAAAACCTGCCACATCCCT----ACT------CGCTAACTATTTCGTGTTACACCCCAAAGCAACACAAAGAATAATCTTCTTTTTTTTTTTCAATTTTCGTC---------AG-CA---------AA-A---T-TGC-GC--AAC-TTTGTGTATGA-CGTCACACAT-CAAAGGAGGTAT--C---ATTGTGCAACTT-G-TAGCCGCATTGTGA-
gi|24 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcT--T-TAAAGGAAGC-TTTCATTTACCT----ACT-CA-TGTACCA----TTTCGTGCTTCTCCCCAAAACAACACAGTGAAG
gi|14 : agtAAGC-TGTCATATACCT----ACT-CA-CGTACCA----TTTCGTGCTTCTCCCCAAAAAAACATAGTGAAGCAC----TTTTT----TTTAATCCAAGTCG----ATAAACGCAGAT--TGC-AA-AA--T-AGC-AC--AAGCTTCGTGT-TTGACGCCACAAAT-CGAGGGTGGTAA--C-A--TTTTGCACTTT-G-TAACCGGATTGTGA-TATAT--G-CTAA--TTT-TTTATATCGATCA--AA-CGCATTTCGGAA-AT-----AAAAGTGAAAT-TGG--A--G--------------------AA----TATGC-TTATGTTTTATAATGAGATAATTAA-AT-AA-CAAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----cnnnnnnnnnncaaaacaa
gi|13 : AGT-TCTCACATCCCTACTTACT-AAACA-----AA-GTTTCAGGTTTCAACCAAAAACGACACGTCGAAG--CGTGATTTT----ATTTAATCCAAGTCG----ATAAAGACAAATTGGA--AA-A---T-AGC-AC--CAGGTTAGTGTTTTG-CGTCACAAAT-CAAGGAAGGTAA--TGA-ATT-TGCACTTT-G-TAGCCACAATGCGA-TA-AT--GCAAAG--TCT-GA-ATATCAATAA--AA-AGCATTTCGC-A-GT-----AAATGTGATAT-T-G--A--GG------------------AAATAATTATGC-TCTTGTTCAATAATGATATTGATGA-AT-CA-TAAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCTgacatt
gi|15 : AAACCAAACAAAGCACA------TTTTTATTA---AATCTAAGTCG----ATAAACACAAAT--TGC-AA-AA--T-AGA-GC--AAGCTTCGTGTGTGA-CGTCACAAAT-TAAAGGAG----------------------------CCGAAATGTGA-TA-ATATG-CTAA--TTTTGA-ATAT--------AA-CGCATTTCAG-AAGT-----AAATGTAGTAT-T-G--G--GT------------------ATA----GATGC-TTATGTTCAATAATGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAA
gi|5 : cttaaagttaaaagaagctatcacaaccctactcacTTT-TTATTCAATCCAAGTCG----ATAAGCACGAAT--TAC-AA-A---TTAGT-GC--AATCTTCGTTTTTAA-CGTCACAAAT-CAAGGGAGGTCA--C-A--TTTTG-ACCCTAG-TAGCCGCAATGTGG-TACAT--G-CTAA--TTTTGA-ATATCGATAC--A--CGTATTTCGG-AAGT-----AAATGTGA--------------------------------AAA----------TTATGTTCGATAATGTTATT---GA-AG-TA---AAACGAAAA-A-TTAAAACTTTGAAC-ATTT-TATTGCT-----TATGACCTTTc
gi|10 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacAAAACAAAT--GTC-AA-AA--T-AGT-CT--AAGCCTCGTCTGTTA-CGTCACACATTCAAGGGAGGTAA--C-A--TTTTGCACTTT-G-TAGCCGCAATGTGATTA-AT--T-CTAAC-TTT-CA-ATATTGATAA--AC-TACATTTCGG-AGGT-----AAATGTGATATAA-G--G--GG------------------AAA----TGTGC-ATTTGTTCCATATTGATAAT-ATGG-ATGTA-TAAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAtaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaac---T-AGC-GC--AAGCTTCGTGTATTA-CGTCACAAAT-CAAGGGAGATAA--C-A-GTT-TGCACTTT-T-TAACCGCAGTGTGA-TACAT--G-CTAA--TTTTGA-AAATCGATAA--AA-CGCATTTCGG-AAGC-----AAAGGTGCTAA-T-G--G--GG------------------GAA----AATGT-TTATGTTCAATAATGATATTATTGA-AA-TA-TAAAA-TGACC-AATTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|18 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcGTTCGTGTATGG-CGTCATAACT-CAAGGGAGATCA--C-A-ATT-TGCACTCT-G-TAGCCGCAGTGTGA-C--AT--G-CTAACTTTT-GA-ATATCGATAA--AA-CGCATTTCGGTT-GT-----AAATGTGATAT-T-GGTG--GTGGGGGGGGGGGGGGGGGGGGG----GATGT-TTATGTTTCATAATGATATTATTAA-Aa
gi|17 : AAAT-CAAGGGAGATAATTC-A----GTGCGGTTA-AATAGCAAGAGTATGA-AAGAT--G-AT----TTT-GA-TTATCGATTA--AA-CGCATTTC------TCTTTTAAATATAA--T-T-T--A--GG------------------AAACA--GATGC-TTATATCCAA-AATGGTATTATTGA-AA-TA------CTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAactcttttcatataaaat
gi|22 : agatgacgtcacaattcaagga-GT-----AAATGGGATAA-T-G--A--GA------------------AAA----AATGT-TTTTGTTCAATAATAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAgt
gi|6 : tcgAAC-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTT
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|23 ): CAGCCACTCGCCAATCCATACATCCATCTATCTACATCCATCCATCCGCAGTTATGAATGTTTTTGTTACGACACTTAACGAAATGTCTTCTCA
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 11111 44444444444444444444444444444444444 4444444444444444444 11111111111 11111111 2222222222 4444444444 1111 222 11111 3333333333333333333 11111111 3333333333 22222222 22222 5555555555 1111 11 11 111 2222222222222 1111111111 22222222222222222222 11111 11
lowQualScore : 3 22222 1 2 3 1 1 22222222222222222222222222222222222 1 5 3 1 0 1111111111111111111 0 66 2 99999999999 1 66666666 5555555555 0 5 5 8888888888 0 0 0000 888 2 555 4 0 22222 55 0 1 2 666 33 777 9999999999999999999 666 3 33333333 4 9999999999 7777 8888888888 00000000 2 55 22222 77777 2 6666 5555555555 1 555 2 5 1 1111 3 6666 222 0 4 00 33 5 44 2 1 1 2 33 000 4 0 2 2 0000000000000 99 2 22 1 33 2 4444444444 2 00000000000000000000 0 00000 2 4 2 888 3 0 11 2 2 2 1 77777
lowQualScore : . ..... . . . . . ................................... . . . . . ................... . .. . ........... . ........ .......... . . . .......... . . .... ... . ... . . ..... .. . . . ... .. ... ................... ... . ........ . .......... .... .......... ........ . .. ..... ..... . .... .......... . ... . . . .... . .... ... . . .. .. . .. . . . . .. ... . . . . ............. .. . .. . .. . .......... . .................... . ..... . . . ... . . .. . . . . .....
lowQualScore : 3 00000 0 5 5 0 0 11111111111111111111111111111111111 0 0 0 0 1 0000000000000000000 5 99 9 66666666666 9 11111111 1111111111 7 3 7 0000000000 4 2 6666 111 8 222 0 2 77777 55 8 0 3 222 66 000 9999999999999999999 444 6 22222222 0 2222222222 7777 4444444444 99999999 3 00 11111 11111 7 1111 6666666666 3 000 9 3 4 1111 1 9999 888 1 0 00 99 7 33 7 1 0 4 22 444 2 7 4 4 2222222222222 44 5 22 8 44 5 4444444444 5 33333333333333333333 9 11111 7 8 9 333 1 8 66 9 0 9 0 77777
consensus : GGGA-GGGGA--G--GTGTCCCTCACAACCCCCCCCT-----G----CC----TC-----------A-----AATAATTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCCCG--------CCTGTCTGA-CAATATATAT----AT-C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACG-ACC-GTCCACCCAA--AN-CAAC--ATCCGTCCGTCCGTCCGTCCG--CNCAT---CCAATAGNC---CCGNCGG-CC---GTCCAT---CCA-TC--------CATC-CATCCATC--GN-C-ATCC----ATT-C-A----CCC--------ATCCATCCA--T--A-TGCAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCACATCCCT----ACT--A-C-TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACGAAGCGCGT--T-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCACAAAT-CAAGGGAGGTAA--CA-ATTTTGCACTTTG-TAGCCGCAATGTGA-TA-AT--GC-TAA--TTT-GA-ATATCGATAA--AA-CGCATTTC-----GG-A-GTAAATGTGATAT-T--------------------GAGGAAA----GATGC-TTATGTTCAATAATGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGA-GGGGA--G--GTGTCCTTCACAANCCCCCNCT----------------TC-----------A-----ANTAATTGAAACGATCNTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TNT-----TGTCATTTC--------TGCCCG--------CCTGTCTGA-CAATATATAT----ATTC-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCNGTA-G-ACC-GTCCACCCAA--AN-CAAC--ATCCGTCCGTCCNTCCGTCCG--CCCAT---CCAATAGNC---CCGNCGG-CC---GTCCAT---CCA-TC--------CATC-TATCCGTCC-GA-C-ATCC----ATT-C-A----CCC--------ATCCATCNA--T--A-TGCAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCACATCCCT----ACT-AAAC-TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACGAAGCACGT--T-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCACAAAT-CAAGGGAGGTAA--CA-ATTTTGCACTTTG-TAGCCGCAATGTGA-TA-AT--GC-TAG--TTT-GA-ATATCGATAA--AA-CGCATTTC-----GG-A-GTAAATGTGATAT-T--------------------GAGGAAA----GATGC-TTATGTTCAATAATGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTANAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGG-GGGGG--G--GT-TCCT-AACAACCCCCCCCT----------------TC-----------A-----AATAAATGAATCAATTCTACGCCTATAA--------ATACA--TGTCAAATGAAATTTCTGTTGCTATT--TCTAACATTCACTTGA---TTT-----TGTCATTTC--------TGCCTA--------CCTATCTGA-CAATATTTATGTCGATCC-GTCCGTCCGTCCGTCC----GACAGCCCACCCACCAGTA-----C-GTCCATCCAA--AG-CAAC--ATCCGCCTGTCCGTCTGCCCA--CCCAT---CCAATAGGC---CCAGCGG-CT---GTCCAC---TCA-TC--------GATC-TTTCCATCC-GAAC-ATCC----ATT-C-A----CCC--------ATCCATCAA--T--A-TACAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCATATCCCTCCGCACT-AAACATACTAAATA---TTTCGT-ATTTCACCCCGAAACAACACAAAGAAGAGCGT--TGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-A--A-A--T-AGTTCAATGTTCATGTATTGCGTCACAAAT-CAAGGGAGATAA--CA-ATTGTATACTTTG-TAGCCGCAGTTTGA-TA-AT--GA-TAG--TTT-GA-ATATCAATAA--AA-CGCATTTC-----GG-A-GTAAACGTGACAT-T--------------------GAGTAAA----GATGC-TTATGTTCTGTAATGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : C----ATC-C-G----TCC--------GTCCATCAA--T--C-CGCAATTTTGAATGTTt
gi|10 : ATCCA---CGAACAAAACAAATGTC-A--A-AA-T-AGTCTAAGCCTCGTCTGTTACGTCACACATTCAAGGGAGGTAA--CA--TTTTGCACTTTG-TAGCCGCAATGTGATTA-AT--TC-TAAC-TTT-CA-ATATTGATAA--AC-TACATTTC-----GG-AGGTAAATGTGATATAA--------------------GGGGAAA----TGTGC-ATTTGTTCCATATTGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCACAAAT-CAAGGGAGATAA--CA-GTTT-GCACTTTT-TAACCGCAGTGTGA-TACAT--GC-TAA--TTTTGA-AAATCGATAA--AA-CGCATTTC-----GG-AAGCAAAGGTGCTAA-T--------------------GGGGGAA----AATGT-TTATGTTCAATAATGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-CCACCAATCCGTCCGTCCGTTCGTCCG--TGAAT---CCAa
gi|12 : aacacacatcaTTATA-----ATTTAAAAAAAACCTGCCACATCCCT----ACT------CGCTAACTA---TTTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCT-TTTTT-TTTTTCAATTTTCGTC-----AG-CA-------A--A-A--T-TGCGCAA-CTTTGTGTATGACGTCACACAT-CAAAGGAGGTAT--C--ATTGTGCAACTTG-TAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCT----ACT------TACTAAACAAAGTTTCAG-GTTTCAACCAAAAACGACACGTCGAAGCGTGA--T-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-A--A-AA-T-AGCACCAGGTTAGTGTTTTGCGTCACAAAT-CAAGGAAGGTAA--TG-AATTTGCACTTTG-TAGCCACAATGCGA-TA-AT--GCAAAG--TCT-GA-ATATCAATAA--AA-AGCATTTC-----GC-A-GTAAATGTGATAT-T--------------------GAGGAAATAATTATGC-TCTTGTTCAATAATGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCT----ACT-CACG-TAC----CA---TTTCGT-GCTTCTCCCCAAAAAAACATAGTGAAGCAC----T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-A--A-AA-T-AGCACAAGCTTCGTGTTTGACGCCACAAAT-CGAGGGTGGTAA--CA--TTTTGCACTTTG-TAACCGGATTGTGA-TATAT--GC-TAA--TTT-TTTATATCGATCA--AA-CGCATTTC-----GGAA-ATAAAAGTGAAAT-T--------------------G-GAGAA----TATGC-TTATGTTTTATAATGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GTT-AAAAGAAGC-TATCACAACCCT----ACT-----------------------------CAC----AAAC--CA-AACAAAGCACAT--T-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-A--A-AA-T-AGAGCAAGCTTCGTGTGTGACGTCACAAAT-TAAAGGAG--------------------------CCGAAATGTGA-TA-ATATGC-TAA--TTTTGA-ATAT--------AA-CGCATTTC-----AG-AAGTAAATGTAGTAT-T--------------------GGGTATA----GATGC-TTATGTTCAATAATGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cGGATGGGGACTGTTGTATCTGTC-CAAACCTCCC-------------------------------------ATTAATTAAAAAGATCCTACGCCTATAA--------GTACA--GATCAAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCCTG--------CCTGTCTGA-CAATATATAT----AT---GTCTGTCCGTACGACC----GACCACC--ACTGCCTGTACG-ACC-GTTCATTTAA------AAT--AT--ATTCTTCAATTCGTCCG--TCCAT---CCGATAGc
gi|17 : ggggaAAAT-CAAGGGAGATAATTCA-GT---GCGGTTAAATAGCAAGAGTATGA-AAGAT--GA-T----TTT-GA-TTATCGATTA--AA-CGCATTTCTCTTT------TAAATATAAT-T-T---------------------AGGAAACA--GATGC-TTATATCCAA-AATGGTATTATTGA-A---AT-A---CTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAttagcattcccgcccacca
gi|18 : agatgacgtcacaattcaaggaTTCGTGTATGGCGTCATAACT-CAAGGGAGATCA--CA-ATTT-GCACTCTG-TAGCCGCAGTGTGA-CA--T--GC-TAACTTTT-GA-ATATCGATAA--AA-CGCATTTC-----GGTT-GTAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGGG----GATGT-TTATGTTTCATAATGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCCGTGGTTGCCCACCTC-----------C-----AATTATTGAAACGATAATACGCCTATAATACATGTAATACA--TTTGAAATGAAATTTCTAATGCAATT--TCTAACATGAGCTTGA---TAG-----TGTCATTTC--------TGactcttttcatataaaat
gi|2 : A--G--GTGTCCCTTTCAACCTCCCCCTAGGTTGACCTCCT---CC-----------A-----ACTA-TTGAAACGATCGTACGCCTAT-------------------------GATATTTCTAATGCTATT--TCCAACATGAGTTTCA---TAT-----TGTCATTTC--------TGCCTT--------CCGGCCTGA-CAATACCTAT----CTCC-GTCGGACCGCCCGTCC-----ACCAACCA---ACCAGTACG-ACC-GTCAACCCAA--AT-CAGC--ATCCGGCTGTCCTTCCGTCCA--CATAT---CTAATAGTC---TTTCCGG-C----ATCCATATTCCA-TC--------CATC-TATCAATTC-AC-C-AACC----TTT-CTA----CCTTTCCATCAATCCATCCA--TCCA-TCCATTTCGGAACGTTATA-----GTTGAAGAGAAAC-TGTTACATTCCT----ACTCAAA------AAACA---TTTCAT-GTT-CACTTCAAACCAACACAACGTAACACGT--T-TTTTT-------AATC---------AAAGACAAATCGA-A--ATA--T-AGTGCAATCTTCGTGAAATGCATCACAAAT-CAAGGGAAGTAG--CA-ACTTT-CAATTTG-TAGCAGCAATATGA-TA-GT-------------------ATCGATAA--CA-CTCATTTC-----AG-A-GTAAATATGATAT-T--------------------AAAGAAA----GATGC-GTATGTTCAAAAATGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GA--G--GTGTCGCTCACAACCTCCCGCTCCCCAGGTTGCCCACCTC-----------C-----AATTATTGAAA-GATACTACGCCTATAATACATGTTATATA--TTTGAAATGACATTTTTAATGCTATT--TCTAACATGAGCTTGA---TAT-----TGTCATTTC--------TG
gi|21 : --A-CGCAATTTGTAATATTATACATTAGTTAAAACGAAGC-TGCCAAATCCCT----AC-----C-CACTAAACG---TTTCGT-GTTTCA
gi|21 : cACGT--T-TCGTG-TT--TCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaa-GTAAATGGGATAA-T--------------------GAGAAAA----AATGT-TTTTGTTCAATAATAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgTCCAT---ACA-TC--------CATC-TATCT------A-C-ATCC----AT----------CC--------ATCC-------------GCAGTTATGAATGTTTTT-----GTT
gi|24 : cagccactcgccaaTTTAAAGGAAGC-TTTCATTTACCT----ACT-CATG-TAC----CA---TTTCGT-GCTTCTCCCCAAAACAACACAGTGAAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGA-GGGGA--G--GTGTCCTTCACAACCTTCCACT----------------TCTCAGGTCGCCCACCCGCAATAATTGAAATGAACGTACCCCTATAG--------ATACA--TGCCAAATGAAATGTTTAAAGCTATT--TCTAACATGCAC--GA-------------------C--------GGTCCA--------C---TCAAAACAACATAT-------TTCTGTCCGTCCGCCCGTCCAATAGGTTGCCCAGCCGCNNNNN-N-NNN-NNNNNNNNNN--NN-NNNN--NNNNNNNNNNNNNNNNNNNNN--NNNNN---NNNNNNNNN---NNNNNNN-NN---NNNNNN---NNN-NN--------NNNN-NNNNNNNNN-NN-N-NNNN----NNN-N-N----NNN--------NNNNNNNNN--N--A-TGCAATTTGGAATGTTATA-----ATTTAAACGA-GC-TGCCACATCCCT----GCT------CACTAAACA---TTTCCTTGTTTCACCCCAAAACAACACAACGAAGCACG------TTTT-TTATTCAATCTAAGTCGATAAAGACATATTGA-AATA-A--T-ATCAAAAGGTTTGTGCATGAAGTCACAAAT-TAAGGGAGGTAA--CA-A-TTTGCACTGTG-TATCCGCACTGTGA-TA-AC--GCAAAG--TTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnncaaaacaa
gi|4 : cgtatcacaaccaacAACGTGTATTTGA---TGG-----TGACTTTTC--------TGCCCGTCTGCTTGCCTGTCTGG-CAATATAAA-------------CGTCCGTCTATCC----GACCGCCCGCCCA--------------TCTAACCAA--A---AAT--ATCCA-CCGTCCGTCCAGCCG--CTAATATACCAATTTAT---CCATT----T---GTGCAT---TAA-TC--------AATTATATCCGTCT-G-----TCC----GTT-C-A----TCC--------ATCTATCCG--T------CCATTTGGAATATT
gi|4 : TTGTG-----GTTTAGAAGAAGC-TGCCACATAATT----ACT-AA-----CTCACCA---TTTCGT-GTTACGCCCCAAAAT--CACAA-GAA-CGCAT--T-TTTT--------AATCAAAGTCGATAAACACAAATTGCGA--A-A--T-AACTCAAGCTTCCTATATGACGTCACAAAT-GAAGGGCGGTAA--CA-A-ATTGCACTTTG-TACCCACAATGTGA-TACAT--GC-TAG--CTT-AG-GTAT--AT------------------------------TGTGATAC-T--------------------GAGGTAA----GATGC-TTATGTTTAATAA------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTAA--------ATATAACTTCCAAATGGAAGTTCTAATGCTGTT--TCTAACATTCACCTGA---TGG-----TGTACCTTC--------TGC-----------CAT-TCTGA-CAATATATAC----AT---GCCTGTTATTCAGTCC----GACCACCAGCACGCCTGTGTG-ACC-GTCCATCTAA--AA-AAAC--ATCCATCCATCCTTCCATTCA--TCCAT---CCATTG-------CAACGGCCC---GTCCAT---CCA-CC--------
gi|5 : C---ATCCAT---CCA-TC--------CTTC-CATTCATC-----C-ATCC----ATTGC-AACGGCCC--------GTCCATCCACCT--GCTGCAATTTGGAATGTTTTT-----GTTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaaTATTATG-----GTTTAAAAGAGGC-TGTCACGTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-A--A-A--TTAGTGCAATCTTCGTTTTTAACGTCACAAAT-CAAGGGAGGTCA--CA--TTTTGACCCTAG-TAGCCGCAATGTGG-TACAT--GC-TAA--TTTTGA-ATATCGATAC--A--CGTATTTC-----GG-AAGTAAATGTGA-----------------------------AAA----------TTATGTTCGATAATG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTT-----TGTCATTTC--------TGCCTG--------CCTACGTGA-CAATATAAAT---------GTTTGTCCATCAGTCT----GACCGCCCACCCACCAGTATG-ACA-ATCCATCCAA--AG-CAAC--ATCCGTCTGTTCATCAG-CCAAACCCAT---CCAATAG-----------G-CT---GCCTGG---CCA-TC--------AATC-TATCC----------ATCC----ATT-C-A----CCC--------ATCCATCCA--T--A-TGCAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCACATCCCT----ACT------TACTAAACA---TTTCTT-GTTTCACCTCAAAACAACACAACAAAGCACA-----TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-A--A-A--T-AGCTCAAGGTTCATGTAGTGTGTCACAAAT-CAAGGGAGGTAA--TA-ATTTT-CAATTTG-TAGCCGCAGTGTAG-TA-AT--GC-AAAC-TTT-GA-ATACCAATAA--AGTTGCATTTC-----AG-A-GTAAATGTGATAT-T--------------------GAGGAAA----GACGtaa
gi|6 : ttga-TTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaataaagttgcatttcagagtaaatgtgatattgaggaaagacgaacagCCCACCT----------------CC-----------A-----ACTA-TTGAAACGATCCTACGCCT-------------------------ATGATATTTATGATGCTATT--TCTAACATGAGC
gi|7 : ccctaggttgGTCCGTCTGCCC----GTCCACCAACCAACCAGTA-GGACC-GTCAACCCAA--AT-CAGC--ATCCGTCTGTCCTTCCGCCCA--CATAT---CTAATAGTCTTTCCGGCAT-CCATAGTCCAT---CCA-TCTTTCAATTCACC-CACCTATCT-GC-CTATCCTTATATC-C-A----TCC--------ATCCATCCA--T---------TTCGGAATGTTATA-----GTTTAAAAGACGC-TGTCACGTCCCT----ACT-CAAC-----AAACA---TTTCAT-GTT-CACCCCAAACCAACACAACGTAATGCGT--T-TTTTT-T-ATTCAA-------------AGACAAATCGA-A--ATA--T-AGAGCAATCTCCGTGTAATGTGTCACAAAT-CAAGGGAGGTAA--CA-ACTTT-CAATTTG-TAGCGGCAAT-------------------------A-GTATCGATAAGTAA----ATATC-----GG-A-GTAAATATGATAT-T--------------------GAAGAAA----GGT-C-GTATGTTCAaatgtccgtctgcccgtccaccaaccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatC---GTCC-T---CCAATC--------CATC-CATTCATCAAGC-C-ATCC----ACC-C-A----TCCGTAT----ATCCATCCA--T--C-AGTAACTTGAAATGTT
gi|8 : ttcaatccaaattgttggaacacccgtaTA-----ATATAAACGAAGC-TGTCAAATC-------------ACATACTA-----------GT-GTTATATCCCAAAACAACACACTAAAGCACGT--T-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAA--A-A--T-AGCGCAAACGTCGTGTATGGCGTCATAAAA-TAAAGGAGGCAA--TATGTTTT--ATGTAG-TTGTTGCAATG----TA-AT--GC-TAT--CTT-----TA---ATAA--AA-CGC-------------------ATATGATAT-T--------------------ATGGAAT----GATGCGTTATGTTCAATTATGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctag-ACCAGTCAACCCAA--AAACAAC--ATATGTCTGTCCGTCCGTCCA--CATAT---CTAATATAT---TTCCCGG-AA---GTCCAT---CCA-TT--------CATC-CATACATC---A-A-TTCC----ATTGC-A----TCC--------ATCCATTCA--T------TAA----GGATGTTATA-----GTTTAAAAGAAGC-GGTCACATCCCT----ACT-CAAC-----AAACA---TTTCAT-ATTTCACCCCAAACCAACACAGCGTAGCACA------TTTT-TTATTC-------------AAAGACAAATCG--A--A-ATCT-AGCGCATGGTTCGTGTAATGCGTCACAAAT-GAAGGGAGTTAA--CA-A-TTTGCATTTTG-TAGCGGCAAT---A-TA-AT---------------A-ATAT-----------------TC-----GG-A-GTAAATGTGATAT-T--------------------GAAGGTA----TATGC-TTATGTTCAAAAATGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc
Alignments
lowQualScore : 111111111111111111111111111111111111111111111
lowQualScore : 111111111111111111111111111111111111111111111 4444444444444444444 111111 11111111 2222222222 4444444444 1111 33333333333333333333333 111111111 4444444444444 11111111 222222 4444444 11 11 1111111111 111 111111111111 111111111 22222222222222222222 111 1111
lowQualScore : 2 888888888888888888888888888888888888888888888 5 3 0 0 1111111111111111111 0 66 2 2 777 888888 3 44444444 4444444444 3 5 9999999999 0 0000 88 22 1 0 0 4 0 55 88 55 0 1 0 2 888888 777 99999999999999999999999 4 555555555 4 5555555555555 11111111 2 8888 000000 77777 2 6666 9999999 8 1 555 2 1 1 555 1 9999 88888 222 0 4 00 33 5 44 2 1 1 0000000000 2 33 333 4 0 2 2 666666666666 99 2 22 1 33 2 333333333 2 00000000000000000000 33 55555 2 33 444 4 2 111 2 0 2222 3 2 1 77777
lowQualScore : . ............................................. . . . . ................... . .. . . ... ...... . ........ .......... . . .......... . .... .. .. . . . . . .. .. .. . . . . ...... ... ....................... . ......... . ............. ........ . .... ...... ..... . .... ....... . . ... . . . ... . .... ..... ... . . .. .. . .. . . . .......... . .. ... . . . . ............ .. . .. . .. . ......... . .................... .. ..... . .. ... . . ... . . .... . . . .....
lowQualScore : 8 222222222222222222222222222222222222222222222 9 0 7 1 0000000000000000000 5 99 9 3 000 000000 2 55555555 6666666666 4 0 0000000000 2 6666 88 55 8 3 2 0 2 55 99 55 8 6 2 3 888888 000 77777777777777777777777 0 888888888 4 6666666666666 44444444 3 5555 444444 11111 7 1111 6666666 6 3 000 9 8 4 444 4 3333 11111 888 1 0 00 99 7 33 7 1 0 3333333333 4 22 333 2 7 4 4 444444444444 44 5 22 8 44 5 111111111 5 33333333333333333333 22 77777 5 77 777 5 7 666 9 1 0000 0 9 0 77777
consensus : GGGGGGGGAGGTGTCCCTCACAACCTCCC-------------CCCA---------CCTCC--------------AATNATTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCCCG--------CCTGTCTGA-CAATATATAT-T-G-----TCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-CAAC--ATCCGTCCGTCCGTCCGTCCA--CNCAT---CCAATAGNC---CCGGCGG-CC---G---TCCATCCA-TC--------CATC-CATCCATC--GAC-AT-----CC----ATT-CATCC----ATCCATCCAT--ATGCAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCACATCCCT----ACT----C-TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGAGGGGAGGTGTCCCTCACAACCCCCC-------------CCTG---------CCTCA--------------AATAATTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCCCG--------CCTGTCTGA-CAATATATATATCG-----TCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-CAAC--ATCCGTCCGTCCGTCCGTCCG--CNCAT---CCAATAGNC---CCGNCGG-CC---G---TCCATCCA-TC--------CATC-CATCCATC--GNC-AT-----CC----ATT-CACCC----ATCCATCCAT--ATGCAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCACATCCCT----ACT-A--C-TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGGGGGGGGGTTCCTAACAACCCCCC-------------CCT------------TCA--------------AATAAATGAATCAATTCTACGCCTATAA--------ATACA--TGTCAAATGAAATTTCTGTTGCTATT--TCTAACATTCACTTGA---TTT-----TGTCATTTC--------TGCCTA--------CCTATCTGA-CAATATTTATGTCGATCCGTCCGTCCGTCCGTCC----GACAGCCCACCCACCAGTACG-----TCCATCCAA--AG-CAAC--ATCCGCCTGTCCGTCTGCCCA--CCCAT---CCAATAGGC---CCAGCGG-CT---G---TCCACTCA-TC--------GATC-TTTCCATCCGAAC-AT-----CC----ATT-CACCC----ATCCATCAAT--ATACAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCATATCCCTCCGCACT-AAACATACTAAATA---TTTCGT-ATTTCACCCCGAAACAACACAAAG---AAGAGCGTTGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-A--A-A--T-AGTTCAATGTTCATGTATTGCGTCAC----------AAAT-CAAGGGAGATAA--CA-ATTGTATACTT-TGTAGCCGCAGTTTGA-TA-AT--GATAG--TTT-GA-ATATCAATAA--AA-CGCATTTCGG-A-G-----TAAACGTGACAT-T--------------------GAGTAA--A----GATGC-TTATGTTCTG--TAA---TGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : C-AT-----CC----GTC-CGTCC----ATCAATCC------GCAATTTTGAATGTTt
gi|10 : ATCCA---CGAACAAAACAAATGTC-A--A-AA-T-AGTCTAAGCCTCGTCTGTTACGTCAC----------ACATTCAAGGGAGGTAA--CA--TTTTGCACTT-TGTAGCCGCAATGTGATTA-AT--TCTAAC-TTT-CA-ATATTGATAA--AC-TACATTTCGG-AGG-----TAAATGTGATATAA--------------------GGGGAA--A----TGTGC-ATTTGTTCCA--TAT---TGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCAC----------AAAT-CAAGGGAGATAA--CA-GTTT-GCACTT-TTTAACCGCAGTGTGA-TACAT--GCTAA--TTTTGA-AAATCGATAA--AA-CGCATTTCGG-AAG-----CAAAGGTGCTAA-T--------------------GGGGGA--A----AATGT-TTATGTTCAA--TAA---TGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-CCACCAATCCGTCCGTCCGTTCGTCCG--TGAAT---CCAa
gi|12 : aacacacatcaTTATA-----ATTTAAAAAAAACCTGCCACATCCCT----ACT------CGCTAACTA---TTTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCTT-TTTTT-TT-TTCAATTTTCGTC-----AG-CA-------A--A-A--T-TGCGCAA-CTTTGTGTATGACGTCAC----------ACAT-CAAAGGAGGTAT--C--ATTGTGCAACT-TGTAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCT----ACT------TACTAAACAAAGTTTCAG-GTTTCAACCAAAAACGACACGTCG---AAGCGTGAT-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-A--A-AA-T-AGCACCAGGTTAGTGTTTTGCGTCAC----------AAAT-CAAGGAAGGTAA--TG-AATTTGCACTT-TGTAGCCACAATGCGA-TA-AT--GCAAAG-TCT-GA-ATATCAATAA--AA-AGCATTTCGC-A-G-----TAAATGTGATAT-T--------------------GAGGAA--ATAATTATGC-TCTTGTTCAA--TAA---TGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCT----ACTCA--CGTAC----CA---TTTCGT-GCTTCTCCCCAAAAAAACATAGTG---AAGCAC--T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-A--A-AA-T-AGCACAAGCTTCGTGTTTGACGCCAC----------AAAT-CGAGGGTGGTAA--CA--TTTTGCACTT-TGTAACCGGATTGTGA-TATAT--GCTAA--TTT-TTTATATCGATCA--AA-CGCATTTCGG-A-AA----TAAAAGTGAAAT-T--------------------GGAGAA-------TATGC-TTATGTTTTA--TAA---TGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GTT-AAAAGAAGC-TATCACAACCCT----ACT-----------------------------CAC----AAAC--CA-AACA---AAGCACATT-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-A--A-AA-T-AGAGCAAGCTTCGTGTGTGACGTCAC----------AAAT-TAAAGGAG--------------------------CCGAAATGTGA-TA-ATATGCTAA--TTTTGA-ATAT--------AA-CGCATTTCAG-AAG-----TAAATGTAGTAT-T--------------------GGGTAT--A----GATGC-TTATGTTCAA--TAA---TGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cTAATTAAAAAGATCCTACGCCTATAA--------GTACA--GATCAAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCCTG--------CCTGTCTGA-CAATATATATAT-G-----TCTGTCCGTACGACC----GACCACC--ACTGCCTGTACGACC-GTTCATTTAA--AA-T-AT--ATTCTTCAATTCGTCCGTC------CAT---CCGATAGc
gi|17 : ggggaggatggggactgttgtatctgtccaaacctcccatATGACGTCACAATTCAAGGAAAAT-CAAGGGAGATAATTCA-G---TGCGGTTAAATAGCAAGAGTATGA-AAGAT--GAT----TTT-GA-TTATCGATTA--AA-CGCATTTC------TCTTTTAAATATAAT-T-T---------------------AGGAAACA----GATGC-TTATATCCAA---AA---TGGTATTATTGA-A---AT----ACTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAttagcattcccgcccacca
gi|18 : agTTCGTGTATGGCGTCAT----------AACT-CAAGGGAGATCA--CA-ATTT-GCACTC-TGTAGCCGCAGTGTGA-CA--T--GCTAACTTTT-GA-ATATCGATAA--AA-CGCATTTCGGTT-G-----TAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGG--G----GATGT-TTATGTTTCA--TAA---TGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCCGTGGTTGCCCA---------CCTCC--------------AATTATTGAAACGATAATACGCCTATAATACATGTAATACA--TTTGAAATGAAATTTCTAATGCAATT--TCTAACATGAGCTTGA---TAG-----TGTCATTTC--------TGactcttttcatataaaat
gi|2 : AGGTGTCCCTTTCAACCTCCC-------------CCTAGGTTGACCTCCTCC--------------AACTATTGAAACGATCGTACGCCTAT-------------------------GATATTTCTAATGCTATT--TCCAACATGAGTTTCA---TAT-----TGTCATTTC--------TGCCTT--------CCGGCCTGA-CAATACCTAT--C------TCCGTCGGACCGCCC----GTCCACCAACCAACCAGTACGACC-GTCAACCCAA--AT-CAGC--ATCCGGCTGTCCTTCCGTCCA--CATAT---CTAATAGTCTTTCCGGCAT-CC---ATATTCCATCCA-TC--------TATC-AATTCACC--AAC-CTTTCTACC----TTTCCATCA----ATCCATCCATCCATCCATTTCGGAACGTTATA-----GTTGAAGAGAAAC-TGTTACATTCCT----ACT------CAAAAAACA---TTTCAT-G-TTCACTTCAAACCAACACAACG---TAACACGTT-TTTTT-------AATC---------AAAGACAAATCGA-A--ATA--T-AGTGCAATCTTCGTGAAATGCATCAC----------AAAT-CAAGGGAAGTAG--CA-ACTTT-CAATT-TGTAGCAGCAATATGA-T------------------A-GTATCGATAA--CA-CTCATTTCAG-A-G-----TAAATATGATAT-T--------------------AAAGAA--A----GATGC-GTATGTTCAA--AAA---TGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GAGGTGTCGCTCACAACCTCCCGCTCCCCAGGTTGCCCA---------CCTCC--------------AATTATTGAAA-GATACTACGCCTATAATACATGTTATATA--TTTGAAATGACATTTTTAATGCTATT--TCTAACATGAGCTTGA---TAT-----TGTCATTTC--------TG
gi|21 : --ACGCAATTTGTAATATTATACATTAGTTAAAACGAAGC-TGCCAAATCCCT----AC-----C-CACTAAACG---TTTCGT-GTTTCA
gi|21 : cTTCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaaacgtttcgtgt-G-----TAAATGGGATAA-T--------------------GAGAAA--A----AATGT-TTTTGTTCAA--TAA---TAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgCAG-CC---A---CTCGCCAA-TC--------CATA-CATCCATC----T-AT-----CT----A---CATCC----ATCCATCC------GCAGTTATGAATGTTTTT-----GTT
gi|24 : TTTAAAGGAAGC-TTTCATTTACCT----ACTCA--TGTAC----CA---TTTCGT-GCTTCTCCCCAAAACAACACAGTG---AAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGAGGGGAGGTGTCCTTCACAACCTTCC-------------ACT----------TCTCAGGTCGCCCACCCGCAATAATTGAAATGAACGTACCCCTATAG--------ATACA--TGCCAAATGAAATGTTTAAAGCTATT--TCTAACATGCAC--GA---CG------------------------GTCCA--------C---TCAAAACAACATATTTCT-G-----TCCGTCCGCCCGTCCAATAGGTTGCCCAGCCGCNNNNNNNNNN-NNNNNNNNNN--NN-NNNN--NNNNNNNNNNNNNNNNNNNNN--NNNNN---NNNNNNNNN---NNNNNNN-NN---N---NNNNNNNN-NN--------NNNN-NNNNNNNN--NNN-NN-----NN----NNN-NNNNN----NNNNNNNNNN--ATGCAATTTGGAATGTTATA-----ATTTAAACGA-GC-TGCCACATCCCT----GCT------CACTAAACA---TTTCCTTGTTTCACCCCAAAACAACACAACG---AAGCACG----TTTT-TTATTCAATCTAAGTCGATAAAGACATATTGA-AATA-A--T-ATCAAAAGGTTTGTGCATGAAGTCAC----------AAAT-TAAGGGAGGTAA--CA-A-TTTGCACTG-TGTATCCGCACTGTGA-TA-AC--GCAAAG-TTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnncaaaacaa
gi|4 : cgtatcacaaccaacAACGTGTATTTGA---TGG-----TGACTTTTC--------TGCCCGTCTGCTTGCCTGTCTGG-CAATATAAA------------CGTCCGTCTATCC----GACCGCCCGC------------CC-ATCTAACCAA--A---AAT--ATCCA-CCGTCCGTCCAGCCG--CTAATATACCAATTTAT---CCAT----TT---G---TGCATTAA-TC--------AATTATATCCGTC----T-GT-----CC----GTT-CATCC----ATCTATCCGT-----CCATTTGGAATATT
gi|4 : TTGTG-----GTTTAGAAGAAGC-TGCCACATAATT----ACT-A-----ACTCACCA---TTTCGT-GTTACGCCCCAAAAT--CACAA-G---AA-CGCATT-TTTT--------AATCAAAGTCGATAAACACAAATTGCGA--A-A--T-AACTCAAGCTTCCTATATGACGTCAC----------AAAT-GAAGGGCGGTAA--CA-A-ATTGCACTT-TGTACCCACAATGTGA-TACAT--GCTAG--CTT-AG-GTAT--AT------------------------------TGTGATAC-T--------------------GAGGTA--A----GATGC-TTATGTTTAA--TAA---------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTAA--------ATATAACTTCCAAATGGAAGTTCTAATGCTGTT--TCTAACATTCACCTGA---TGG-----TGTACCTTC--------TGCCA-----------T-TCTGA-CAATATATACAT-G-----CCTGTTATTCAGTCC----GACCACCAGCACGCCTGTGTGACC-GTCCATCTAA--AA-AAAC--ATCCATCCATCCTTCCATTCA--TCCAT---CCATTG-------CAACGGCCC---G---TCCATCCA-CC--------
gi|5 : TGCAATTTGGAATGTTTTT-----GTTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgcTATTATG-----GTTTAAAAGAGGC-TGTCACGTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-A--A-A--TTAGTGCAATCTTCGTTTTTAACGTCAC----------AAAT-CAAGGGAGGTCA--CA--TTTTGACCCT-AGTAGCCGCAATGTGG-TACAT--GCTAA--TTTTGA-ATATCGATAC--A--CGTATTTCGG-AAG-----TAAATGTGA-----------------------------AA--A----------TTATGTTCGA--TAA---TG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTT-----TGTCATTTC--------TGCCTG--------CCTACGTGA-CAATATAAAT---G-----TTTGTCCATCAGTCT----GACCGCCCACCCACCAGTATGACA-ATCCATCCAA--AG-CAAC--ATCCGTCTGTTCATCAG-CCAAACCCAT---CCAATAG-----------G-CT---G---CCTGGCCA-TC--------AATC-TATCCATC--------------C----ATT-CACCC----ATCCATCCAT--ATGCAATTTGGAATGTTATA-----GTTTAAAAGAAGC-TGTCACATCCCT----ACT------TACTAAACA---TTTCTT-GTTTCACCTCAAAACAACACAACA---AAGCACA---TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-A--A-A--T-AGCTCAAGGTTCATGTAGTGTGTCAC----------AAAT-CAAGGGAGGTAA--TA-ATTTT-CAATT-TGTAGCCGCAGTGTAG-TA-AT--GCAAAC-TTT-GA-ATACCAATAA--AGTTGCATTTCAG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GACGtaa
gi|6 : ttgaAA--A----GTTGC---AT-TTCAGAGTAAATGTGATATTGAGGA-A-------AGACGAA-C-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaat-------------CCCA---------CCTCC--------------AACTATTGAAACGATCCTACGCCT-------------------------ATGATATTTATGATGCTATT--TCTAACATGAGC--AA---TG-------------TC--------CGTCTG--------CCCGTCCAC-CAA
gi|7 : ccctaggttgGTCCGTCTGCCC----GTCCACCAACCAACCAGTAGGACC-GTCAACCCAA--AT-CAGC--ATCCGTCTGTCCTTCCGCCCA--CATAT---CTAATAGTCTTTCCGGCAT-CCATAG---TCCATCCA-TCTTTCAATTCACC-CACCTATCT-GCCTAT-----CCTTATATC-CATCC----ATCCATCCAT--------TTCGGAATGTTATA-----GTTTAAAAGACGC-TGTCACGTCCCT----ACT----C-AAC-AAACA---TTTCAT-GTT-CACCCCAAACCAACACAACG---TAATGCGTT-TTTTT-T-ATTCAA-------------AGACAAATCGA-A--ATA--T-AGAGCAATCTCCGTGTAATGTGTCAC----------AAAT-CAAGGGAGGTAA--CA-ACTTT-CAATT-TGTAGCGGCAAT------------------------A-GTATCGATAAGTAA----ATATCGG-A-G-----TAAATATGATAT-T--------------------GAAGAA--A----GGT-C-GTATGTTCAccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatC---G---TCC-TCCAATC--------CATC-CATTCATCAAGCC-AT-----CC----ACC-CATCCGTATATCCATCCAT--CAGTAACTTGAAATGTT
gi|8 : ttcaatccaaattgttggaacacccgtaTA-----ATATAAACGAAGC-TGTCAAATC-----------A--CATACTA-----------GT-GTTATATCCCAAAACAACACACTA---AAGCACGTT-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAA--A-A--T-AGCGCAAACGTCGTGTATGGCGTCAT----------AAAA-TAAAGGAGGCAA--TATGTTTT--ATGT-AGTTGTTGCAATG----TA-AT--GCTAT--CTT-----TA---ATAA--AA-CGC-------------------ATATGATAT-T--------------------ATGGAA--T----GATGCGTTATGTTCAA--TTA---TGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagCAACCAGTCAACCCAA--AAACAAC--ATATGTCTGTCCGTCCGTCCA--CATAT---CTAATATAT---TTCCCGG-AA---G---TCCATCCA-TT--------CATC-CATACATC--AAT--T-----CC----ATTGCATCC----ATCCATTCAT-----TAA----GGATGTTATA-----GTTTAAAAGAAGC-GGTCACATCCCT----ACT----C-AAC-AAACA---TTTCAT-ATTTCACCCCAAACCAACACAGCG---TAGCACA----TTTT-TTATTC-------------AAAGACAAATCG--A--A-ATCT-AGCGCATGGTTCGTGTAATGCGTCAC----------AAAT-GAAGGGAGTTAA--CA-A-TTTGCATTT-TGTAGCGGCAAT---A-TA-AT--------------A-ATAT-----------------TCGG-A-G-----TAAATGTGATAT-T--------------------GAAGGT--A----TATGC-TTATGTTCAA--AAA---TGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc
Alignments
lowQualScore : 1111111111111
lowQualScore : 1111111111111 222222222 4444444444444444444 111111 11111111 2222222222 111111111 44444444444444 11111111 33333333333333333 11111111 11111111 3333333333333333 11111111 111111111 22222222 22222222 11 11 1111111111 111 111111111111 111111111 22222222222222222222 111 1111
lowQualScore : 0000000000000 222222222 1 5 3 0 0 1111111111111111111 0 66 2 2 777 888888 3 44444444 1111111111 1 4 777777777 99999999999999 9999 66666666 55 11 0 0 0 4 0 55 88 55 0 1 3 99999 666 22222222222222222 666 666 33333333 3 33333333 4 2222222222222222 11111111 444444444 7777 44444444 66666 2 2 5555 77777777 5 2 444 0 2 2 1 555 1 9999 88888 222 0 4 00 33 5 44 2 1 1 0000000000 2 33 333 4 0 2 2 666666666666 99 2 22 1 33 2 333333333 2 00000000000000000000 33 55555 2 33 444 4 2 111 2 0 2222 3 2 1 77777
lowQualScore : ............. ......... . . . . . ................... . .. . . ... ...... . ........ .......... . . ......... .............. .... ........ .. .. . . . . . .. .. .. . . . ..... ... ................. ... ... ........ . ........ . ................ ........ ......... .... ........ ..... . . .... ........ . . ... . . . . ... . .... ..... ... . . .. .. . .. . . . .......... . .. ... . . . . ............ .. . .. . .. . ......... . .................... .. ..... . .. ... . . ... . . .... . . . .....
lowQualScore : 0000000000000 999999999 0 7 0 7 1 0000000000000000000 5 99 9 3 000 000000 2 55555555 4444444444 9 4 888888888 00000000000000 4444 11111111 66 88 6 3 2 0 2 55 99 55 8 6 6 22222 444 55555555555555555 444 444 22222222 6 22222222 0 8888888888888888 55555555 555555555 7777 11111111 77777 9 5 7777 11111111 7 2 777 3 7 8 4 444 4 3333 11111 888 1 0 00 99 7 33 7 1 0 3333333333 4 22 333 2 7 4 4 444444444444 44 5 22 8 44 5 111111111 5 33333333333333333333 22 77777 5 77 777 5 7 666 9 1 0000 0 9 0 77777
consensus : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--GGTCGCCCA---------CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCCTG--------CCTGTCCGA-C---------AATATATAT-------C-----GTCCGTCCGTCCGTCC----GACCG--------CCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-CAAC--ATCCGTCCGTCCGTCCGTCCA--CNCAT---CCAATA---GNC---CCG-GCGTCC---G---TCCATC--------CA-TC--------CATC-CATCCATC--NA--C--AT-----CC----ATC-CAT---------CC----ATCCATCCA--T--A-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGGGGGGAGGTGTCCCTCACAACCTCCC-------------CCCA---------CCTCCAATNA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCCCG--------CCTGTCTGA-C---------AATATATAT-------T-----GTCCGTCCGTCCGTCC----GACCG--------CCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-CAAC--ATCCGTCCGTCCGTCCGTCCA--CNCAT---CCAATA---GNC---CCG-GCGGCC---G---TCCATC--------CA-TC--------CATC-CATCCATC--GA--C--AT-----CC----ATT-CAT---------CC----ATCCATCCA--T--A-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGGGGGGGGGTTCCTAACAACCCCCC-------------CCT------------TCAAATAA-ATGAATCAATTCTACGCCTATAA--------ATACA--TGTCAAATGAAATTTCTGTTGCTATT--TCTAACATTCACTTGA---TTT-----TGTCATTTC--------TGCCTA--------CCTATCTGA-C---------AATATTTATGTCGATCC-----GTCCGTCCGTCCGTCC----GACAG--------CCCACCCACCAGTACG-----TCCATCCAA--AG-CAAC--ATCCGCCTGTCCGTCTGCCCA--CCCAT---CCAATA---GGC---CCA-GCGGCT---G---TCCACT--------CA-TC--------GATC-TTTCCATCCGAA--C--AT-----CC----ATT-CAC---------CC----ATCCATCAA--T--A-TACAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCATATCCCTCCGCACTAAACA--TACTAAATA---TTTCGT-ATTTCACCCCGAAACAACACAAAG---AAGAGCGTTGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-A--A-A--T-AGTTCAATGTTCATGTATTGCGTCAC----------AAAT-CAAGGGAGATAA--CA-ATTGTATACTT-TGTAGCCGCAGTTTGA-TA-AT--GATAG--TTT-GA-ATATCAATAA--AA-CGCATTTCGG-A-G-----TAAACGTGACAT-T--------------------GAGTAA--A----GATGC-TTATGTTCTG--TAA---TGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : --C--AT-----CC----GTC-CGT---------CC----ATCAATCC---------GCAATTTTGAATGTTt
gi|10 : A-----ATTTAAATA----C-TGCCACATTCCT-----TT---C---TACTAACTA---TTCCAT-GTTACATCCACGAACAAAACAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|10 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcATCCA---CGAACAAAACAAATGTC-A--A-AA-T-AGTCTAAGCCTCGTCTGTTACGTCAC----------ACATTCAAGGGAGGTAA--CA--TTTTGCACTT-TGTAGCCGCAATGTGATTA-AT--TCTAAC-TTT-CA-ATATTGATAA--AC-TACATTTCGG-AGG-----TAAATGTGATATAA--------------------GGGGAA--A----TGTGC-ATTTGTTCCA--TAT---TGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCAC----------AAAT-CAAGGGAGATAA--CA-GTTT-GCACTT-TTTAACCGCAGTGTGA-TACAT--GCTAA--TTTTGA-AAATCGATAA--AA-CGCATTTCGG-AAG-----CAAAGGTGCTAA-T--------------------GGGGGA--A----AATGT-TTATGTTCAA--TAA---TGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-CCACCAATCCGTCCGTCCGTTCGTCCG--TGAAT---CCAa
gi|12 : aacacacatcaTTATA-----ATTTAAA-AAAAACCTGCCACATCCCT----ACT---C----GCTAACTA---TTTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCTT-TTTTT-TT-TTCAATTTTCGTC-----AG-CA-------A--A-A--T-TGCGCAA-CTTTGTGTATGACGTCAC----------ACAT-CAAAGGAGGTAT--C--ATTGTGCAACT-TGTAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCT----ACT-------TACTAAACAAAGTTTCAG-GTTTCAACCAAAAACGACACGTCG---AAGCGTGAT-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-A--A-AA-T-AGCACCAGGTTAGTGTTTTGCGTCAC----------AAAT-CAAGGAAGGTAA--TG-AATTTGCACTT-TGTAGCCACAATGCGA-TA-AT--GCAAAG-TCT-GA-ATATCAATAA--AA-AGCATTTCGC-A-G-----TAAATGTGATAT-T--------------------GAGGAA--ATAATTATGC-TCTTGTTCAA--TAA---TGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCT----ACT---C----ACGTACCA---TTTCGT-GCTTCTCCCCAAAAAAACATAGTG---AAGCAC--T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-A--A-AA-T-AGCACAAGCTTCGTGTTTGACGCCAC----------AAAT-CGAGGGTGGTAA--CA--TTTTGCACTT-TGTAACCGGATTGTGA-TATAT--GCTAA--TTT-TTTATATCGATCA--AA-CGCATTTCGG-A-AA----TAAAAGTGAAAT-T--------------------GGAGAA-------TATGC-TTATGTTTTA--TAA---TGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GTT-AAA-AGAAGC-TATCACAACCCT----ACT---C---------------------------AC----AAAC--CA-AACA---AAGCACATT-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-A--A-AA-T-AGAGCAAGCTTCGTGTGTGACGTCAC----------AAAT-TAAAGGAG--------------------------CCGAAATGTGA-TA-ATATGCTAA--TTTTGA-ATAT--------AA-CGCATTTCAG-AAG-----TAAATGTAGTAT-T--------------------GGGTAT--A----GATGC-TTATGTTCAA--TAA---TGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cA---------CCTCCCATTAATTAAAAAGATCCTACGCCTATAA--------GTACA--GATCAAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCCTG--------CCTGTCTGA-C---------AATATATATA------T-----GTCTGTCCGTACGACC----GACCA--------CC--ACTGCCTGTACGACC-GTTCATTTAA--AA-T-AT--ATTCTTCAATTCGTCCGTC------CAT---CCGATA---Gc
gi|16 : ggggaggatggggactgttgtatctgtccaaCTG--------CCTGTACGA-CCGTTCATTTAAAATATAT-------TCTTCAATTCGTCCGTCCATCC----GATAGTTAGCATTCCCGCCCACCAttagcattcccgcccacca
gi|17 : ggggaggatggggactgttgtatctgtccaaacctcccattaattaaaaagatcctacgcctataagtacagatcaaatgtaatttctaatgatattaaaaaaacccgcgcttgaaagtgtttttgtgtcctttctgcctgcttgcctgcctgtctgacaatatatatatgtctgtccgtacgaccgaccaccaATGACGTCACAATTCAAGGAAAAT-CAAGGGAGATAATTCA-G---TGCGGTTAAATAGCAAGAGTATGA-AAGAT--GAT----TTT-GA-TTATCGATTA--AA-CGCATTTC------TCTTTTAAATATAAT-T-T---------------------AGGAAACA----GATGC-TTATATCCAA---AA---TGGTATTATTGA-A---AT----ACTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAA
gi|18 : agTTCGTGTATGGCGTCAT----------AACT-CAAGGGAGATCA--CA-ATTT-GCACTC-TGTAGCCGCAGTGTGA-CA--T--GCTAACTTTT-GA-ATATCGATAA--AA-CGCATTTCGGTT-G-----TAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGG--G----GATGT-TTATGTTTCA--TAA---TGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCCGTGGTTGCCCA---------CCTCCAATTA-TTGAAACGATAATACGCCTATAATACATGTAATACA--TTTGAAATGAAATTTCTAATGCAATT--TCTAACATGAGCTTGA---TAG-----TGTCATTTC--------TGactcttttcatataaaat
gi|2 : AGGTGTCCCTTTCAACCTCCC-------------CCTAGGTTGACCTCCTCCAACTA-TTGAAACGATCGTACGCCTAT-------------------------GATATTTCTAATGCTATT--TCCAACATGAGTTTCA---TAT-----TGTCATTTC--------TGCCTT--------CCGGCCTGA-C---------AATACCTAT-------C------TCCGTCGGACCGCCC----GTCCA--------CCAACCAACCAGTACGACC-GTCAACCCAA--AT-CAGC--ATCCGGCTGTCCTTCCGTCCA--CATAT---CTAATA---GTCTTTCCG-GCATCC---ATATTCCATC--------CA-TC--------TATC-AATTCACC--AA--C--CTTTCTACC----TTTCCAT---------CA----ATCCATCCA--TCCA-TCCATTTCGGAACGTTATA-----GTTGAAG-AGAAAC-TGTTACATTCCT----ACT---C----AAAAAACA---TTTCAT-G-TTCACTTCAAACCAACACAACG---TAACACGTT-TTTTT-------AATC---------AAAGACAAATCGA-A--ATA--T-AGTGCAATCTTCGTGAAATGCATCAC----------AAAT-CAAGGGAAGTAG--CA-ACTTT-CAATT-TGTAGCAGCAATATGA-T------------------A-GTATCGATAA--CA-CTCATTTCAG-A-G-----TAAATATGATAT-T--------------------AAAGAA--A----GATGC-GTATGTTCAA--AAA---TGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GAGGTGTCGCTCACAACCTCCCGCTCCCCAGGTTGCCCA---------CCTCCAATTA-TTGAAA-GATACTACGCCTATAATACATGTTATATA--TTTGAAATGACATTTTTAATGCTATT--TCTAACATGAGCTTGA---TAT-----TGTCATTTC--------TG
gi|21 : --A-CGCAATTTGTAATATTATACATTAGTTAAAA-CGAAGC-TGCCAAATCCCT----AC----C---CACTAAACG---TTTCGT-GTTTCA
gi|21 : cTTCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaaacgtttcgtgt-G-----TAAATGGGATAA-T--------------------GAGAAA--A----AATGT-TTTTGTTCAA--TAA---TAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgC---G---CCAATC--------CA-TA--------CATC-CATCTATC--TA--C--AT-----CC----AT--------------CC----ATCC-------------GCAGTTATGAATGTTTTT-----GTT
gi|24 : cagccactTTTAAA-GGAAGC-TTTCATTTACCT----ACT---CATGTAC----CA---TTTCGT-GCTTCTCCCCAAAACAACACAGTG---AAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGAGGGGAGGTGTCCTTCACAACCTTCCACTTCTCAGGTCGCCCA---------CCCGCAATAA-TTGAAATGAACGTACCCCTATAG--------ATACA--TGCCAAATGAAATGTTTAAAGCTATT--TCTAACATGCAC--GA---CG------------------------GTCCA--------C---TCAAAAC---------AACATATTTC------T-----GTCCGTCCGCCCGTCCAATAGGTTG--------CCCAGCCGCNNNNNNNNNN-NNNNNNNNNN--NN-NNNN--NNNNNNNNNNNNNNNNNNNNN--NNNNN---NNNNNN---NNN---NNN-NNNNNN---N---NNNNNN--------NN-NN--------NNNN-NNNNNNNN--NN--N--NN-----NN----NNN-NNN---------NN----NNNNNNNNN--N--A-TGCAATTTGGAATGTTATA-----ATTTAAA-CGA-GC-TGCCACATCCCT----GCT---C----ACTAAACA---TTTCCTTGTTTCACCCCAAAACAACACAACG---AAGCACG----TTTT-TTATTCAATCTAAGTCGATAAAGACATATTGA-AATA-A--T-ATCAAAAGGTTTGTGCATGAAGTCAC----------AAAT-TAAGGGAGGTAA--CA-A-TTTGCACTG-TGTATCCGCACTGTGA-TA-AC--GCAAAG-TTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnncaaaacaa
gi|4 : cgtatcacaaccaacAACGTGTATTTGA---TGG-----TGACTTTTC--------TGCCCGTCTGCTTGCCTGTCTGG-C---------AATATAAA-----------------CGTCCGTCTATCC----GACCG--------CCCGC------------CC-ATCTAACCAA--A---AAT--ATCCA-CCGTCCGTCCAGCCG--CTAATATACCAATT---TAT---C----CATTT---G---TGCATT--------AA-TC--------AATTATATCCGTC------T--GT-----CC----GTT-CAT---------CC----ATCTATCCG--T------CCATTTGGAATATT
gi|4 : TTGTG-----GTTTAGA-AGAAGC-TGCCACATAATT----ACT---A----ACTCACCA---TTTCGT-GTTACGCCCCAAAAT--CACAA-G---AA-CGCATT-TTTT--------AATCAAAGTCGATAAACACAAATTGCGA--A-A--T-AACTCAAGCTTCCTATATGACGTCAC----------AAAT-GAAGGGCGGTAA--CA-A-ATTGCACTT-TGTACCCACAATGTGA-TACAT--GCTAG--CTT-AG-GTAT--AT------------------------------TGTGATAC-T--------------------GAGGTA--A----GATGC-TTATGTTTAA--TAA---------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTAA--------ATATAACTTCCAAATGGAAGTTCTAATGCTGTT--TCTAACATTCACCTGA---TGG-----TGTACCTTC--------TGCCA-----------T-TCTGA-C---------AATATATACA------T-----GCCTGTTATTCAGTCC----GACCA--------CCAGCACGCCTGTGTGACC-GTCCATCTAA--AA-AAAC--ATCCATCCATCCTTCCATTCA--TCCAT---CC-ATT---GCA---ACG-GC--CC---G---TCCATC--------CA-CC--------
gi|5 : TCAGTCCGACCA--C--------CAGCA---CGC---CTGTGTGACC---G---TCCATCTAAAAAAACA-TC--------CATC-CATCCTTC--CATTC--AT-----CC----ATC-CATTGCAACGGCCC----GTCCATCCACCT--GCTGCAATTTGGAATGTTTTT-----GTTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttatTATTATG-----GTTTAAA-AGAGGC-TGTCACGTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-A--A-A--TTAGTGCAATCTTCGTTTTTAACGTCAC----------AAAT-CAAGGGAGGTCA--CA--TTTTGACCCT-AGTAGCCGCAATGTGG-TACAT--GCTAA--TTTTGA-ATATCGATAC--A--CGTATTTCGG-AAG-----TAAATGTGA-----------------------------AA--A----------TTATGTTCGA--TAA---TG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTT-----TGTCATTTC--------TGCCTG--------CCTACGTGA-C---------AATATAAAT-------------GTTTGTCCATCAGTCT----GACCG--------CCCACCCACCAGTATGACA-ATCCATCCAA--AG-CAAC--ATCCGTCTGTTCATCAG-CCAAACCCAT---CCAATA---GGC---T---GC--CT---G---GCCATC--------AA-TC--------TATC-CATCCAT-------------------------T-CAC---------CC----ATCCATCCA--T--A-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT-------TACTAAACA---TTTCTT-GTTTCACCTCAAAACAACACAACA---AAGCACA---TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-A--A-A--T-AGCTCAAGGTTCATGTAGTGTGTCAC----------AAAT-CAAGGGAGGTAA--TA-ATTTT-CAATT-TGTAGCCGCAGTGTAG-TA-AT--GCAAAC-TTT-GA-ATACCAATAA--AGTTGCATTTCAG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GACGtaa
gi|6 : ttgaAA--A----GTTGC---AT-TTCAGAGTAAATGTGATATTGAGGA-A-------AGACGAA-C-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaat-------------CCCA---------CCTCCAACTA-TTGAAACGATCCTACGCCT-------------------------ATGATATTTATGATGCTATT--TCTAACATGAGC--AA---TG-------------TC--------CGTCTG--------CCCGTCCAC-C---------AA
gi|7 : ccctaggttgGTCCGTCTGCCC----GTCCA--------CCAACCAACCAGTAGGACC-GTCAACCCAA--AT-CAGC--ATCCGTCTGTCCTTCCGCCCA--CATAT---CTAATA---GTCTTTCCG-GCATCCATAG---TCCATC--------CA-TCTTTCAATTCACC-CACCTATC--TG--CCTAT-----CCTTATATC-CAT---------CC----ATCCATCCA--T---------TTCGGAATGTTATA-----GTTTAAA-AGACGC-TGTCACGTCCCT----ACT---C---AAC-AAACA---TTTCAT-GTT-CACCCCAAACCAACACAACG---TAATGCGTT-TTTTT-T-ATTCAA-------------AGACAAATCGA-A--ATA--T-AGAGCAATCTCCGTGTAATGTGTCAC----------AAAT-CAAGGGAGGTAA--CA-ACTTT-CAATT-TGTAGCGGCAAT------------------------A-GTATCGATAAGTAA----ATATCGG-A-G-----TAAATATGATAT-T--------------------GAAGAA--A----GGT-C-GTATGTTCAccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatC---G---TCC-TC--------CAATC--------CATC-CATTCATC--AAGCC--AT-----CC----ACC-CAT---------CCGTATATCCATCCA--T--C-AGTAACTTGAAATGTT
gi|8 : ttcaatccaaattgttggaacacccgtaTA-----ATATAAA-CGAAGC-TGTCAAATCAC-----A---------TACTA-----------GT-GTTATATCCCAAAACAACACACTA---AAGCACGTT-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAA--A-A--T-AGCGCAAACGTCGTGTATGGCGTCAT----------AAAA-TAAAGGAGGCAA--TATGTTTT--ATGT-AGTTGTTGCAATG----TA-AT--GCTAT--CTT-----TA---ATAA--AA-CGC-------------------ATATGATAT-T--------------------ATGGAA--T----GATGCGTTATGTTCAA--TTA---TGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagCAACCAGTCAACCCAA--AAACAAC--ATATGTCTGTCCGTCCGTCCA--CATAT---CTAATATATTTC---CCG-GAA------G---TCCATC--------CA-TT--------CATC-CATACATC--AA--T---T-----CC----ATTGCAT---------CC----ATCCATTCA--T------TAA----GGATGTTATA-----GTTTAAA-AGAAGC-GGTCACATCCCT----ACT---C---AAC-AAACA---TTTCAT-ATTTCACCCCAAACCAACACAGCG---TAGCACA----TTTT-TTATTC-------------AAAGACAAATCG--A--A-ATCT-AGCGCATGGTTCGTGTAATGCGTCAC----------AAAT-GAAGGGAGTTAA--CA-A-TTTGCATTT-TGTAGCGGCAAT---A-TA-AT--------------A-ATAT-----------------TCGG-A-G-----TAAATGTGATAT-T--------------------GAAGGT--A----TATGC-TTATGTTCAA--AAA---TGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc
Alignments
lowQualScore : 33333333 4444444444444444444 111111 11111111 22222222 44444444444 1111 11111111 333333333333333333 111111111 333333333333333333 11 22222222 11 11 111 111111111111 1111111111 22222222222222222222 111 1111
lowQualScore : 3 88888888 4 5 3 0 0 1111111111111111111 0 66 2 2 777 888888 3 44444444 33333333 4 22 5 11111111111 0 0000 88 1 0 0 4 1 0 55 55555555 55 0 3 44 55 2 666 444444444444444444 555 555 3 444444444 4 555555555555555555 8888 55 8888 77 555 3 66666 2 2 5555 55555555 7 2 444 0 2 6 1 555 1 9999 88888 222 0 4 00 33 5 44 2 1 1 2 33 000 4 0 2 2 555555555555 99 2 22 1 33 2 1111111111 2 2 00000000000000000000 88888 2 33 444 4 2 111 2 0 2222 3 2 1 77777
lowQualScore : . ........ . . . . . ................... . .. . . ... ...... . ........ ........ . .. . ........... . .... .. . . . . . . .. ........ .. . . .. .. . ... .................. ... ... . ......... . .................. .... .. .... .. ... . ..... . . .... ........ . . ... . . . . ... . .... ..... ... . . .. .. . .. . . . . .. ... . . . . ............ .. . .. . .. . .......... . . .................... ..... . .. ... . . ... . . .... . . . .....
lowQualScore : 2 11111111 8 7 0 7 1 0000000000000000000 5 99 9 3 000 000000 2 55555555 11111111 5 11 1 99999999999 2 6666 88 8 3 2 0 5 5 00 77777777 00 5 8 99 00 3 444 777777777777777777 888 888 6 111111111 0 111111111111111111 5555 11 5555 77 888 3 77777 9 5 7777 55555555 3 2 777 3 7 1 4 444 4 3333 11111 888 1 0 00 99 7 33 7 1 0 4 22 444 2 7 4 4 999999999999 44 5 22 8 44 5 7777777777 5 5 33333333333333333333 99999 5 77 777 5 7 666 9 1 0000 0 9 0 77777
consensus : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCACCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCG-TCC--ACNCAT---CCAATA---GNC---CCGGCGT--CC---GT---CCATCCA-TC--------CATC-CATCCATCN--A--C------A----TCC----ATC-CATCC----ATCCATCCAT-TGCAA---TTT-GGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCACAAAT-CAAGGGAGGTAA--CA-ATTTTGCACTTTG-TAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTC-----GG-A-G-TAAATGTGATAT-T--------------------GAGGAAA----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTCGCCCACCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCCGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCG-TCC--ACNCAT---CCAATA---GNC---CCGGCGT--CC---GT---CCATCCA-TC--------CATC-CATCCATCN--A--C------A----TCC----ATC-CATCC----ATCCATCCATATGCAA---TTT-GGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCACAAAT-CAAGGGAGGTAA--CA-ATTTTGCACTTTG-TAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTC-----GG-A-G-TAAATGTGATAT-T--------------------GAGGAAA----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGGGGGGGGGTTCCTAACAACCCCCCCCT------------------TCAAATAA-ATGAATCAATTCTACGCCTATAA--------ATACA--TGTCAAATGAAATTTCTGTTGCTATT--TCTAACATTCACTTGA---TTT-----TGTCATTTC--------TGCC--------TACCTATCTGACAATATTTATGTCGATCC-GTCCGTCCGTCCGTCC----GACAGCCCACCCACCAGTACG-----TCCATCCAA--AG-C-----AAC--ATCCGCCTGTCCGTCTG-CCC--ACCCAT---CCAATA---GGC---CCAGCGG--CT---GT---CCACTCA-TC--------GATC-TTTCCATCCGAA--C------A----TCC----ATT-CACCC----ATCCATCAATATACAA---TTT-GGAATGTTATA-----GTTTAAA-AGAAGC-TGTCATATCCCTCCGCACTAAACA--TACTAAATA---TTTCGT-ATTTCACCCCGAAACAACACAAAG---AAGAGCGTTGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-A--A-A--T-AGTTCAATGTTCATGTATTGCGTCACAAAT-CAAGGGAGATAA--CA-ATTGTATACTTTG-TAGCCGCAGTTTGA-TA-AT--GATAG--TTT-GA-ATATCAATAA--AA-CGCATTTC-----GG-A-G-TAAACGTGACAT-T--------------------GAGTAAA----GATGC-TTATGTTCTG--TAA---TGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : --C------A----TCC----GTC-CGTCC----ATCAATCC----GCAA---TTT-TGAATGTTt
gi|10 : A-----ATTTAAATA----C-TGCCACATTCCT-----TT---C---TACTAACTA---TTCCAT-GTTACATCCACGAACAAAACAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|10 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcATCCA---CGAACAAAACAAATGTC-A--A-AA-T-AGTCTAAGCCTCGTCTGTTACGTCACACATTCAAGGGAGGTAA--CA--TTTTGCACTTTG-TAGCCGCAATGTGATTA-AT--TCTAAC-TTT-CA-ATATTGATAA--AC-TACATTTC-----GG-AGG-TAAATGTGATATAA--------------------GGGGAAA----TGTGC-ATTTGTTCCA--TAT---TGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCACAAAT-CAAGGGAGATAA--CA-GTTT-GCACTTTT-TAACCGCAGTGTGA-TACAT--GCTAA--TTTTGA-AAATCGATAA--AA-CGCATTTC-----GG-AAG-CAAAGGTGCTAA-T--------------------GGGGGAA----AATGT-TTATGTTCAA--TAA---TGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-C-----CACCAATCCGTCCGTCCGTTCG-TCC--GTGAAT---CCAa
gi|12 : aacacacatcaTTATA-----ATTTAAA-AAAAACCTGCCACATCCCT----ACT---C----GCTAACTA---TTTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCTT-TTTTT-TT-TTCAATTTTCGTC-----AG-CA-------A--A-A--T-TGCGCAA-CTTTGTGTATGACGTCACACAT-CAAAGGAGGTAT--C--ATTGTGCAACTTG-TAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCT----ACT-------TACTAAACAAAGTTTCAG-GTTTCAACCAAAAACGACACGTCG---AAGCGTGAT-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-A--A-AA-T-AGCACCAGGTTAGTGTTTTGCGTCACAAAT-CAAGGAAGGTAA--TG-AATTTGCACTTTG-TAGCCACAATGCGA-TA-AT--GCAAAG-TCT-GA-ATATCAATAA--AA-AGCATTTC-----GC-A-G-TAAATGTGATAT-T--------------------GAGGAAATAATTATGC-TCTTGTTCAA--TAA---TGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCT----ACT---C----ACGTACCA---TTTCGT-GCTTCTCCCCAAAAAAACATAGTG---AAGCAC--T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-A--A-AA-T-AGCACAAGCTTCGTGTTTGACGCCACAAAT-CGAGGGTGGTAA--CA--TTTTGCACTTTG-TAACCGGATTGTGA-TATAT--GCTAA--TTT-TTTATATCGATCA--AA-CGCATTTC-----GG-A-AATAAAAGTGAAAT-T--------------------GGAGAA-----TATGC-TTATGTTTTA--TAA---TGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GTT-AAA-AGAAGC-TATCACAACCCT----ACT---C---------------------------AC----AAAC--CA-AACA---AAGCACATT-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-A--A-AA-T-AGAGCAAGCTTCGTGTGTGACGTCACAAAT-TAAAGGAG--------------------------CCGAAATGTGA-TA-ATATGCTAA--TTTTGA-ATAT--------AA-CGCATTTC-----AG-AAG-TAAATGTAGTAT-T--------------------GGGTATA----GATGC-TTATGTTCAA--TAA---TGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cACCTCCCATTAATTAAAAAGATCCTACGCCTATAA--------GTACA--GATCAAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCC--------TGCCTGTCTGACAATATATATA------T-GTCTGTCCGTACGACC----GACCACC--ACTGCCTGTACGACC-GTTCATTTAA--AA-T------AT--ATTCTTCAATTCGTCCG-TC------CAT---CCGATA---GT-----TAGCATTCCC---GC---CCACCc
gi|17 : ggggaggatggggactgttgtatctgtccaaAAAT-CAAGGGAGATAATTCA-GT---GCGGTTAAATAGCAAGAGTATGA-AAGAT--GAT----TTT-GA-TTATCGATTA--AA-CGCATTTCTCTTT-------TAAATATAAT-T-T---------------------AGGAAACA--GATGC-TTATATCCAA---AA---TGGTATTATTGA-A---AT-A---CTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAa
gi|18 : agatgacgtcacaattcaaggaTTCGTGTATGGCGTCATAACT-CAAGGGAGATCA--CA-ATTT-GCACTCTG-TAGCCGCAGTGTGA-CA--T--GCTAACTTTT-GA-ATATCGATAA--AA-CGCATTTC-----GGTT-G-TAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGGG----GATGT-TTATGTTTCA--TAA---TGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCC--GTGGTTGCCCACCTCCAATTA-TTGAAACGATAATACGCCTATAATACATGTAATACA--TTTGAAATGAAATTTCTAATGCAATT--TCTAACATGAGCTTGA---TAG-----TGTCATTTC--------TGactcttttcatataaaat
gi|2 : AGGTGTCCCTTTCAACCTCCCCCTA----G--GTTGACCTCCTCCAACTA-TTGAAACGATCGTACGCCTAT-------------------------GATATTTCTAATGCTATT--TCCAACATGAGTTTCA---TAT-----TGTCATTTC--------TGCC--------TTCCGGCCTGACAATACCTAT-------C--TCCGTCGGACCGCCC----GTCCACCAACCAACCAGTACGACC-GTCAACCCAA--AT-C-----AGC--ATCCGGCTGTCCTTCCG-TCC--ACATAT---CTAATA---GTCTTTCCGGCAT--CC---ATATTCCATCCA-TC--------TATC-AATTCACCA--A--CCTTTCTACCTTTCC----ATC-AATCC----ATCCATCCAT---CCA---TTTCGGAACGTTATA-----GTTGAAG-AGAAAC-TGTTACATTCCT----ACT---C---AAA-AAACA---TTTCAT-GTT-CACTTCAAACCAACACAACG---TAACACGTT-TTTTT-------AATC---------AAAGACAAATCGA-A--ATA--T-AGTGCAATCTTCGTGAAATGCATCACAAAT-CAAGGGAAGTAG--CA-ACTTT-CAATTTG-TAGCAGCAATATGA-TA-GT------------------ATCGATAA--CA-CTCATTTC-----AG-A-G-TAAATATGATAT-T--------------------AAAGAAA----GATGC-GTATGTTCAA--AAA---TGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GAGGTGTCGCTCACAACCTCCCGCTCCCCAG--GTTGCCCACCTCCAATTA-TTGAAA-GATACTACGCCTATAATACATGTTATATA--TTTGAAATGACATTTTTAATGCTATT--TCTAACATGAGCTTGA---TAT-----TGTCATTTC--------TG
gi|21 : ACGCAA---TTT-GTAATATTATACATTAGTTAAAA-CGAAGC-TGCCAAATCCCT----AC----C---CACTAAACG---TTTCGT-GTTTCA
gi|21 : cTTCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaaacgtttcgtgt-G-TAAATGGGATAA-T--------------------GAGAAAA----AATGT-TTTTGTTCAA--TAA---TAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgC---GC---CAATCCA-TA--------CATC-CATCTATCT--A--C------A----TCC----ATC-----C----ATCC--------GCAG---TTA-TGAATGTTTTT-----GTT
gi|24 : cagccactTTTAAA-GGAAGC-TTTCATTTACCT----ACT---CATGTAC----CA---TTTCGT-GCTTCTCCCCAAAACAACACAGTG---AAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGAGGGGAGGTGTCCTTCACAACCTTCCACTTCTCAG--GTCGCCCACCCGCAATAA-TTGAAATGAACGTACCCCTATAG--------ATACA--TGCCAAATGAAATGTTTAAAGCTATT--TCTAACATGCAC--GA---CG-------GTCCACTC--------AA-------------------AACAACATATTT-------CTGTCCGTCCGCCCGTCCAATAGGTTGCCCAGCCGCNNNNNNNNNN-NNNNNNNNNN--NN-N-----NNN--NNNNNNNNNNNNNNNNN-NNN--NNNNNN---NNNNNN---NNN---NNNNNNN--NN---NN---NNNNNNN-NN--------NNNN-NNNNNNNNN--N--N------N----NNN----NNN-NNNNN----NNNNNNNNNNATGCAA---TTT-GGAATGTTATA-----ATTTAAA-CGA-GC-TGCCACATCCCT----GCT---C----ACTAAACA---TTTCCTTGTTTCACCCCAAAACAACACAACG---AAGCACG----TTTT-TTATTCAATCTAAGTCGATAAAGACATATTGA-AATA-A--T-ATCAAAAGGTTTGTGCATGAAGTCACAAAT-TAAGGGAGGTAA--CA-A-TTTGCACTGTG-TATCCGCACTGTGA-TA-AC--GCAAAG-TTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnncaaaacaa
gi|4 : cgtatcacaaccaacAACGTGTATTTGA---TGG-----TGACTTTTC--------TGCCCGTCTGCTTGCCTGTCTGGCAATATAAA-------------CGTCCGTCTATCC----GACCGCCCGCCCA-------------TCTAACCAA--A--------AAT--ATCCA-CCGTCCGTCCA-GCC--GCTAATATACCAATT---TAT---CCA---T--TT---GT---GCATTAA-TC--------AATTATATCCGTCT--GTCC------G----TTC----ATC-CATCT----ATCCGTCCATTTGGAATATTTT-GGA
gi|4 : TTGTG-----GTTTAGA-AGAAGC-TGCCACATAATT----ACT---A----ACTCACCA---TTTCGT-GTTACGCCCCAAAAT--CACAA-G---AA-CGCATT-TTTT--------AATCAAAGTCGATAAACACAAATTGCGA--A-A--T-AACTCAAGCTTCCTATATGACGTCACAAAT-GAAGGGCGGTAA--CA-A-ATTGCACTTTG-TACCCACAATGTGA-TACAT--GCTAG--CTT-AG-GTAT--AT-------------------------------TGTGATAC-T--------------------GAGGTAA----GATGC-TTATGTTTAA--TAA---------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAtaggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTAA--------ATATAACTTCCAAATGGAAGTTCTAATGCTGTT--TCTAACATTCACCTGA---TGG-----TGTACCTTC--------TGCCA-------T-----TCTGACAATATATACA------T-GCCTGTTATTCAGTCC----GACCACCAGCACGCCTGTGTGACC-GTCCATCTAA--AA-A-----AAC--ATCCATCCATCCTTCCA-TTC--ATCCAT---CC-ATT---GCA---ACGGC----CC---GT---CCATCCA-CC--------
gi|5 : TGCAA---TTT-GGAATGTTTTT-----GTTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgcTATTATG-----GTTTAAA-AGAGGC-TGTCACGTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-A--A-A--TTAGTGCAATCTTCGTTTTTAACGTCACAAAT-CAAGGGAGGTCA--CA--TTTTGACCCTAG-TAGCCGCAATGTGG-TACAT--GCTAA--TTTTGA-ATATCGATAC--A--CGTATTTC-----GG-AAG-TAAATGTGA-----------------------------AAA----------TTATGTTCGA--TAA---TG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTT-----TGTCATTTC--------TGCC--------TGCCTACGTGACAATATAAAT---------GTTTGTCCATCAGTCT----GACCGCCCACCCACCAGTATGACA-ATCCATCCAA--AG-C-----AAC--ATCCGTCTGTTCATCAG--CCAAACCCAT---CCAATA---GGC-------TGC--CT---GG---CCATCAA-TC--------TATC-CATCCATTC--A--C-------------------------CC----ATCCATCCATATGCAA---TTT-GGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT-------TACTAAACA---TTTCTT-GTTTCACCTCAAAACAACACAACA---AAGCACA---TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-A--A-A--T-AGCTCAAGGTTCATGTAGTGTGTCACAAAT-CAAGGGAGGTAA--TA-ATTTT-CAATTTG-TAGCCGCAGTGTAG-TA-AT--GCAAAC-TTT-GA-ATACCAATAA--AGTTGCATTTC-----AG-A-G-TAAATGTGATAT-T--------------------GAGGAAA----GACGtaa
gi|6 : ttgaAAA----GTTGC---AT-TTCAGAGTAAATGTGATATTGAGGA-A-------AGACGAA-C-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaat--G--GTTGCCCACCTCCAACTA-TTGAAACGATCCTACGCCT-------------------------ATGATATTTATGATGCTATT--TCTAACATGAGC--AA---TG-------------TC--------CGTC--------TGCCCGTCCACCAA
gi|7 : ccctaGTCCGTCTGCCC----GTCCACCAACCAACCAGTAGGACC-GTCAACCCAA--AT-C-----AGC--ATCCGTCTGTCCTTCCG-CCC--ACATAT---CTAATA---GTCTTTCCGGCAT--CCATAGT---CCATCCA-TCTTTCAATTCACC-CACCTATCT--G--CCT----A----TCCTTATATC-CATCC----ATCCATCCAT---------TTC-GGAATGTTATA-----GTTTAAA-AGACGC-TGTCACGTCCCT----ACT---C---AAC-AAACA---TTTCAT-GTT-CACCCCAAACCAACACAACG---TAATGCGTT-TTTTT-T-ATTCAA-------------AGACAAATCGA-A--ATA--T-AGAGCAATCTCCGTGTAATGTGTCACAAAT-CAAGGGAGGTAA--CA-ACTTT-CAATTTG-TAGCGGCAAT------------------------A-GTATCGATAAGTAA----ATATC-----GG-A-G-TAAATATGATAT-T--------------------GAAGAAA----GGT-C-GTATGTTCAccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatTCAATCCAA--AT-TGTTGGAAC--ACCCGTACGTCC-TCCAATCC--ATCCAT---TCATCA---AGC---C----AT--CC---AC---CCATCCG-TA--------TATC-CATCCATC
gi|8 : tCGT--AC---GT---CC-TCCAATC--------CATC-CATTCATCA--AGCC------A----TCC----ACC-CATCCGTATATCCATCCATCAGTAA---CTT-GAAATGTTagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|8 : ttcaatccaaattgttggaacaccTA-----ATATAAA-CGAAGC-TGTCAAATCAC-----A---------TACTA-----------GT-GTTATATCCCAAAACAACACACTA---AAGCACGTT-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAA--A-A--T-AGCGCAAACGTCGTGTATGGCGTCATAAAA-TAAAGGAGGCAA--TATGTTTT--ATGTAG-TTGTTGCAATG----TA-AT--GCTAT--CTT-----TA---ATAA--AA-CGC--------------------ATATGATAT-T--------------------ATGGAAT----GATGCGTTATGTTCAA--TTA---TGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagCAACCAGTCAACCCAA--AAAC-----AAC--ATATGTCTGTCCGTCCG-TCC--ACATAT---CTAATATATTTC---CCGGAA--------GT---CCATCCA-TT--------CATC-CATACATCA--A--T-----------TCC----ATTGCATCC----ATCCATTCAT---TAA--------GGATGTTATA-----GTTTAAA-AGAAGC-GGTCACATCCCT----ACT---C---AAC-AAACA---TTTCAT-ATTTCACCCCAAACCAACACAGCG---TAGCACA----TTTT-TTATTC-------------AAAGACAAATCG--A--A-ATCT-AGCGCATGGTTCGTGTAATGCGTCACAAAT-GAAGGGAGTTAA--CA-A-TTTGCATTTTG-TAGCGGCAAT---A-TA-AT--------------A-ATAT-----------------TC-----GG-A-G-TAAATGTGATAT-T--------------------GAAGGTA----TATGC-TTATGTTCAA--AAA---TGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc
Alignments
lowQualScore : 33333333 4444444444444444444 111111 11111111 22222222 44444444444 1111 11111111 3333333333333333333333333 111111111 333333333333333333 222222 22222222 11 11 1111111111 111 111111111111 111111111 22222222222222222222 111 1111
lowQualScore : 3 88888888 77 5 3 0 0 1111111111111111111 0 66 2 2 777 888888 3 44444444 33333333 4 22 11111111111 0 0000 88 1 0 0 4 1 0 55 55555555 55 0 3 44 55 2 666 8888888888888888888888888 555 444444444 4 444444444444444444 8888 4 333333 66666 2 2 5555 55555555 7 2 444 0 2 6 1 555 1 9999 88888 222 0 4 00 33 5 44 2 1 1 0000000000 2 33 333 4 0 2 2 555555555555 99 2 22 1 33 2 333333333 2 00000000000000000000 33 55555 2 33 444 4 2 111 2 0 2222 3 2 1 77777
lowQualScore : . ........ .. . . . . ................... . .. . . ... ...... . ........ ........ . .. ........... . .... .. . . . . . . .. ........ .. . . .. .. . ... ......................... ... ......... . .................. .... . ...... ..... . . .... ........ . . ... . . . . ... . .... ..... ... . . .. .. . .. . . . .......... . .. ... . . . . ............ .. . .. . .. . ......... . .................... .. ..... . .. ... . . ... . . .... . . . .....
lowQualScore : 2 11111111 99 7 0 7 1 0000000000000000000 5 99 9 3 000 000000 2 55555555 11111111 5 11 99999999999 2 6666 88 8 3 2 0 5 5 00 77777777 00 5 8 99 00 3 444 3333333333333333333333333 888 111111111 0 555555555555555555 5555 0 888888 77777 9 5 7777 55555555 3 2 777 3 7 1 4 444 4 3333 11111 888 1 0 00 99 7 33 7 1 0 3333333333 4 22 333 2 7 4 4 999999999999 44 5 22 8 44 5 111111111 5 33333333333333333333 22 77777 5 77 777 5 7 666 9 1 0000 0 9 0 77777
consensus : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCG-TCC--ACNCAT---CCAATA---GNC---CCG-GCGT--CC----GT---CCATCCATC--------CATC-CATCCATCC--G--C------A----TCC----ATC-CATCCATCCATCCAT-T-GCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCG-TCC--ACNCAT---CCAATA---GNC---CCG-GCGT--CC----GT---CCATCCATC--------CATC-CATCCATCN--A--C------A----TCC----ATC-CATCCATCCATCCAT-T-GCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGGGGGGGGGTTCCTAACAACCCCCCCCT--------------------TCAAATAA-ATGAATCAATTCTACGCCTATAA--------ATACA--TGTCAAATGAAATTTCTGTTGCTATT--TCTAACATTCACTTGA---TTT-----TGTCATTTC--------TGCC--------TACCTATCTGACAATATTTATGTCGATCC-GTCCGTCCGTCCGTCC----GACAGCCCACCCACCAGTACG-----TCCATCCAA--AG-C-----AAC--ATCCGCCTGTCCGTCTG-CCC--ACCCAT---CCAATA---GGC---CCA-GCGG--CT----GT---CCACTCATC--------GATC-TTTCCATCCGAA--C------A----TCC----ATT-CACCCATCCATCAATAT-ACAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCATATCCCTCCGCACTAAACA--TACTAAATA---TTTCGT-ATTTCACCCCGAAACAACACAAAG---AAGAGCGTTGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-A--A-A--T-AGTTCAATGTTCATGTATTGCGTCAC----------AAAT-CAAGGGAGATAA--CA-ATTGTATACTT-TGTAGCCGCAGTTTGA-TA-AT--GATAG--TTT-GA-ATATCAATAA--AA-CGCATTTCGG-A-G-----TAAACGTGACAT-T--------------------GAGTAA--A----GATGC-TTATGTTCTG--TAA---TGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : --C------A----TCC----GTC-CGTCCATCAATCC-----GCAATTTTGAATGTTt
gi|10 : A-----ATTTAAATA----C-TGCCACATTCCT-----TT---C---TACTAACTA---TTCCAT-GTTACATCCACGAACAAAACAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|10 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcATCCA---CGAACAAAACAAATGTC-A--A-AA-T-AGTCTAAGCCTCGTCTGTTACGTCAC----------ACATTCAAGGGAGGTAA--CA--TTTTGCACTT-TGTAGCCGCAATGTGATTA-AT--TCTAAC-TTT-CA-ATATTGATAA--AC-TACATTTCGG-AGG-----TAAATGTGATATAA--------------------GGGGAA--A----TGTGC-ATTTGTTCCA--TAT---TGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCAC----------AAAT-CAAGGGAGATAA--CA-GTTT-GCACTT-TTTAACCGCAGTGTGA-TACAT--GCTAA--TTTTGA-AAATCGATAA--AA-CGCATTTCGG-AAG-----CAAAGGTGCTAA-T--------------------GGGGGA--A----AATGT-TTATGTTCAA--TAA---TGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-C-----CACCAATCCGTCCGTCCGTTCG-TCC--GTGAAT---CCAa
gi|12 : aacacacatcaTTATA-----ATTTAAA-AAAAACCTGCCACATCCCT----ACT---C----GCTAACTA---TTTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCTT-TTTTT-TT-TTCAATTTTCGTC-----AG-CA-------A--A-A--T-TGCGCAA-CTTTGTGTATGACGTCAC----------ACAT-CAAAGGAGGTAT--C--ATTGTGCAACT-TGTAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCT----ACT-------TACTAAACAAAGTTTCAG-GTTTCAACCAAAAACGACACGTCG---AAGCGTGAT-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-A--A-AA-T-AGCACCAGGTTAGTGTTTTGCGTCAC----------AAAT-CAAGGAAGGTAA--TG-AATTTGCACTT-TGTAGCCACAATGCGA-TA-AT--GCAAAG-TCT-GA-ATATCAATAA--AA-AGCATTTCGC-A-G-----TAAATGTGATAT-T--------------------GAGGAA--ATAATTATGC-TCTTGTTCAA--TAA---TGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCT----ACT---C----ACGTACCA---TTTCGT-GCTTCTCCCCAAAAAAACATAGTG---AAGCAC--T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-A--A-AA-T-AGCACAAGCTTCGTGTTTGACGCCAC----------AAAT-CGAGGGTGGTAA--CA--TTTTGCACTT-TGTAACCGGATTGTGA-TATAT--GCTAA--TTT-TTTATATCGATCA--AA-CGCATTTCGG-A-AA----TAAAAGTGAAAT-T--------------------GGAGAA-------TATGC-TTATGTTTTA--TAA---TGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GTT-AAA-AGAAGC-TATCACAACCCT----ACT---C---------------------------AC----AAAC--CA-AACA---AAGCACATT-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-A--A-AA-T-AGAGCAAGCTTCGTGTGTGACGTCAC----------AAAT-TAAAGGAG--------------------------CCGAAATGTGA-TA-ATATGCTAA--TTTTGA-ATAT--------AA-CGCATTTCAG-AAG-----TAAATGTAGTAT-T--------------------GGGTAT--A----GATGC-TTATGTTCAA--TAA---TGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cTGTCCAAACCTCCCATTAATTAAAAAGATCCTACGCCTATAA--------GTACA--GATCAAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCC--------TGCCTGTCTGACAATATATATA------T-GTCTGTCCGTACGACC----GACCACC--ACTGCCTGTACGACC-GTTCATTTAA--AA-T------AT--ATTCTTCAATTCGTCCG-TC------CAT---CCGATA---GT-----TA-GCATTCCC----GC---CCACCc
gi|17 : ggggaggatggggactgttgtatcATGACGTCACAATTCAAGGAAAAT-CAAGGGAGATAATTCA-G---TGCGGTTAAATAGCAAGAGTATGA-AAGAT--GAT----TTT-GA-TTATCGATTA--AA-CGCATTTC------TCTTTTAAATATAAT-T-T---------------------AGGAAACA----GATGC-TTATATCCAA---AA---TGGTATTATTGA-A---AT----ACTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAa
gi|18 : agTTCGTGTATGGCGTCAT----------AACT-CAAGGGAGATCA--CA-ATTT-GCACTC-TGTAGCCGCAGTGTGA-CA--T--GCTAACTTTT-GA-ATATCGATAA--AA-CGCATTTCGGTT-G-----TAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGG--G----GATGT-TTATGTTTCA--TAA---TGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCC--GTGGTTGCCCA--CCTCCAATTA-TTGAAACGATAATACGCCTATAATACATGTAATACA--TTTGAAATGAAATTTCTAATGCAATT--TCTAACATGAGCTTGA---TAG-----TGTCATTTC--------TGactcttttcatataaaat
gi|2 : AGGTGTCCCTTTCAACCTCCCCCTA----G--GTTGACCT--CCTCCAACTA-TTGAAACGATCGTACGCCTAT-------------------------GATATTTCTAATGCTATT--TCCAACATGAGTTTCA---TAT-----TGTCATTTC--------TGCC--------TTCCGGCCTGACAATACCTAT-------C--TCCGTCGGACCGCCC----GTCCACCAACCAACCAGTACGACC-GTCAACCCAA--AT-C-----AGC--ATCCGGCTGTCCTTCCG-TCC--ACATAT---CTAATA---GTCTTTCCG-GCAT--CC----ATATTCCATCCATC--------TATC-AATTCACCA--A--CCTTTCTACCTTTCC----ATC-AATCCATCCATCCAT-C--CATTTCGGAACGTTATA-----GTTGAAG-AGAAAC-TGTTACATTCCT----ACT---C---AAA-AAACA---TTTCAT-GTT-CACTTCAAACCAACACAACG---TAACACGTT-TTTTT-------AATC---------AAAGACAAATCGA-A--ATA--T-AGTGCAATCTTCGTGAAATGCATCAC----------AAAT-CAAGGGAAGTAG--CA-ACTTT-CAATT-TGTAGCAGCAATATGA-TA-GT------------------ATCGATAA--CA-CTCATTTCAG-A-G-----TAAATATGATAT-T--------------------AAAGAA--A----GATGC-GTATGTTCAA--AAA---TGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GAGGTGTCGCTCACAACCTCCCGCTCCCCAG--GTTGCCCA--CCTCCAATTA-TTGAAA-GATACTACGCCTATAATACATGTTATATA--TTTGAAATGACATTTTTAATGCTATT--TCTAACATGAGCTTGA---TAT-----TGTCATTTC--------TG
gi|21 : -GCAATTTGTAATATTATACATTAGTTAAAA-CGAAGC-TGCCAAATCCCT----AC----C---CACTAAACG---TTTCGT-GTTTCA
gi|21 : cacTTCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaaacgtttcgtgt-G-----TAAATGGGATAA-T--------------------GAGAAA--A----AATGT-TTTTGTTCAA--TAA---TAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgC----GC---CAATCCATA--------CATC-CATCTATCT--A--C------A----TCC----ATC-CATCC-------------GCAGTTATGAATGTTTTT-----GTT
gi|24 : cagccactTTTAAA-GGAAGC-TTTCATTTACCT----ACT---CATGTAC----CA---TTTCGT-GCTTCTCCCCAAAACAACACAGTG---AAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGAGGGGAGGTGTCCTTCACAACCTTCCACTTCTCAG--GTCGCCCA--CCCGCAATAA-TTGAAATGAACGTACCCCTATAG--------ATACA--TGCCAAATGAAATGTTTAAAGCTATT--TCTAACATGCAC--GA---CG-------GTCCACTC--------AA-------------------AACAACATATTT-------CTGTCCGTCCGCCCGTCCAATAGGTTGCCCAGCCGCNNNNNNNNNN-NNNNNNNNNN--NN-N-----NNN--NNNNNNNNNNNNNNNNN-NNN--NNNNNN---NNNNNN---NNN---NNN-NNNN--NN----NN---NNNNNNNNN--------NNNN-NNNNNNNNN--N--N------N----NNN----NNN-NNNNNNNNNNNNNNNAT-GCAATTTGGAATGTTATA-----ATTTAAA-CGA-GC-TGCCACATCCCT----GCT---C----ACTAAACA---TTTCCTTGTTTCACCCCAAAACAACACAACG---AAGCACG----TTTT-TTATTCAATCTAAGTCGATAAAGACATATTGA-AATA-A--T-ATCAAAAGGTTTGTGCATGAAGTCAC----------AAAT-TAAGGGAGGTAA--CA-A-TTTGCACTG-TGTATCCGCACTGTGA-TA-AC--GCAAAG-TTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnncaaaacaa
gi|4 : cgtatcacaaccaacAACGTGTATTTGA---TGG-----TGACTTTTC--------TGCCCGTCTGCTTGCCTGTCTGGCAATATAAA-------------CGTCCGTCTATCC----GACCGCCCGCCCA-------------TCTAACCAA--A--------AAT--ATCCA-CCGTCCGTCCA-GCC--GCTAATATACCAATT---TAT---CCA----T--TT----GT---GCATTAATC--------AATTATATCCGTCT--GTCC------G----TTC----ATC-CATCTATCCGTCC--------ATTTGGAATATT
gi|4 : TTGTG-----GTTTAGA-AGAAGC-TGCCACATAATT----ACT---A----ACTCACCA---TTTCGT-GTTACGCCCCAAAAT--CACAA-G---AA-CGCATT-TTTT--------AATCAAAGTCGATAAACACAAATTGCGA--A-A--T-AACTCAAGCTTCCTATATGACGTCAC----------AAAT-GAAGGGCGGTAA--CA-A-ATTGCACTT-TGTACCCACAATGTGA-TACAT--GCTAG--CTT-AG-GTAT--AT------------------------------TGTGATAC-T--------------------GAGGTA--A----GATGC-TTATGTTTAA--TAA---------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTAA--------ATATAACTTCCAAATGGAAGTTCTAATGCTGTT--TCTAACATTCACCTGA---TGG-----TGTACCTTC--------TGCCA-------T-----TCTGACAATATATACA------T-GCCTGTTATTCAGTCC----GACCACCAGCACGCCTGTGTGACC-GTCCATCTAA--AA-A-----AAC--ATCCATCCATCCTTCCA-TTC--ATCCAT---CC-ATT---GCA---ACG-GC----CC----GT---CCATCCACC--------
gi|5 : -T-GCAATTTGGAATGTTTTT-----GTTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgcTATTATG-----GTTTAAA-AGAGGC-TGTCACGTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-A--A-A--TTAGTGCAATCTTCGTTTTTAACGTCAC----------AAAT-CAAGGGAGGTCA--CA--TTTTGACCCT-AGTAGCCGCAATGTGG-TACAT--GCTAA--TTTTGA-ATATCGATAC--A--CGTATTTCGG-AAG-----TAAATGTGA-----------------------------AA--A----------TTATGTTCGA--TAA---TG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTT-----TGTCATTTC--------TGCC--------TGCCTACGTGACAATATAAAT---------GTTTGTCCATCAGTCT----GACCGCCCACCCACCAGTATGACA-ATCCATCCAA--AG-C-----AAC--ATCCGTCTGTTCATCAG--CCAAACCCAT---CCAATA---GGC--------TGC--CT----GG---CCATCAATC--------TATC-CATCCATTC--A--C-------------------------CCATCCATCCATAT-GCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT-------TACTAAACA---TTTCTT-GTTTCACCTCAAAACAACACAACA---AAGCACA---TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-A--A-A--T-AGCTCAAGGTTCATGTAGTGTGTCAC----------AAAT-CAAGGGAGGTAA--TA-ATTTT-CAATT-TGTAGCCGCAGTGTAG-TA-AT--GCAAAC-TTT-GA-ATACCAATAA--AGTTGCATTTCAG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GACGtaa
gi|6 : ttgaAA--A----GTTGC---AT-TTCAGAGTAAATGTGATATTGAGGA-A-------AGACGAA-C-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaat--G--GTTGCCCA--CCTCCAACTA-TTGAAACGATCCTACGCCT-------------------------ATGATATTTATGATGCTATT--TCTAACATGAGC--AA---TG-------------TC--------CGTC--------TGCCCGTCCACCAA
gi|7 : ccctaGTCCGTCTGCCC----GTCCACCAACCAACCAGTAGGACC-GTCAACCCAA--AT-C-----AGC--ATCCGTCTGTCCTTCCG-CCC--ACATAT---CTAATA---GTCTTTCCG-GCAT--CCATA-GT---CCATCCATCTTTCAATTCACC-CACCTATCT--G--CCT----A----TCCTTATATC-CATCCATCCATCCAT-T------TCGGAATGTTATA-----GTTTAAA-AGACGC-TGTCACGTCCCT----ACT---C---AAC-AAACA---TTTCAT-GTT-CACCCCAAACCAACACAACG---TAATGCGTT-TTTTT-T-ATTCAA-------------AGACAAATCGA-A--ATA--T-AGAGCAATCTCCGTGTAATGTGTCAC----------AAAT-CAAGGGAGGTAA--CA-ACTTT-CAATT-TGTAGCGGCAAT------------------------A-GTATCGATAAGTAA----ATATCGG-A-G-----TAAATATGATAT-T--------------------GAAGAA--A----GGT-C-GTATGTTCAccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatTCAATCCAA--AT-TGTTGGAAC--ACCCGTACGTCC-TCCAATCC--ATCCAT---TCATCA---AGC---C-----AT--CC----AC---CCATCCGTA--------TATC-CATCCATC
gi|8 : tC---CCGTACGT--CCTCCAAT---CCATCCATT--------CATC-AAGCCATCC--A--C------------CC----ATC-CGTATATCCATCCAT-CAGTAACTTGAAATGTTagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|8 : ttcaatccaaattgttggaacaTA-----ATATAAA-CGAAGC-TGTCAAATCAC-----A---------TACTA-----------GT-GTTATATCCCAAAACAACACACTA---AAGCACGTT-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAA--A-A--T-AGCGCAAACGTCGTGTATGGCGTCAT----------AAAA-TAAAGGAGGCAA--TATGTTTT--ATGT-AGTTGTTGCAATG----TA-AT--GCTAT--CTT-----TA---ATAA--AA-CGC-------------------ATATGATAT-T--------------------ATGGAA--T----GATGCGTTATGTTCAA--TTA---TGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagCAACCAGTCAACCCAA--AAAC-----AAC--ATATGTCTGTCCGTCCG-TCC--ACATAT---CTAATATATTTC---CCG-GAA---------GT---CCATCCATT--------CATC-CATACATCA--A--T-----------TCC----ATTGCATCCATCCATTCAT-T---AA----GGATGTTATA-----GTTTAAA-AGAAGC-GGTCACATCCCT----ACT---C---AAC-AAACA---TTTCAT-ATTTCACCCCAAACCAACACAGCG---TAGCACA----TTTT-TTATTC-------------AAAGACAAATCG--A--A-ATCT-AGCGCATGGTTCGTGTAATGCGTCAC----------AAAT-GAAGGGAGTTAA--CA-A-TTTGCATTT-TGTAGCGGCAAT---A-TA-AT--------------A-ATAT-----------------TCGG-A-G-----TAAATGTGATAT-T--------------------GAAGGT--A----TATGC-TTATGTTCAA--AAA---TGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc
Alignments
lowQualScore : 33333333 4444444444444444444 111111 11111111 22222222 44444444444 1111 11111111 4444444444444444444 22222222 33333333333333 22222 22222222 11 11 1111111111 111 111111111111 111111111 22222222222222222222 111 1111
lowQualScore : 3 88888888 77 5 3 0 0 1111111111111111111 0 66 2 2 777 888888 3 44444444 33333333 4 22 11111111111 0 0000 88 1 0 0 4 1 0 55 55555555 55 0 3 1 888888 666 1111111111111111111 666 666 44444444 0 22222222222222 0 8888 4 66666 66666 2 2 5555 55555555 7 2 444 0 2 6 1 555 1 9999 88888 222 0 4 00 33 5 44 2 1 1 0000000000 2 33 333 4 0 2 2 555555555555 99 2 22 1 33 2 333333333 2 00000000000000000000 33 55555 2 33 444 4 2 111 2 0 2222 3 2 1 77777
lowQualScore : . ........ .. . . . . ................... . .. . . ... ...... . ........ ........ . .. ........... . .... .. . . . . . . .. ........ .. . . . ...... ... ................... ... ... ........ . .............. . .... . ..... ..... . . .... ........ . . ... . . . . ... . .... ..... ... . . .. .. . .. . . . .......... . .. ... . . . . ............ .. . .. . .. . ......... . .................... .. ..... . .. ... . . ... . . .... . . . .....
lowQualScore : 2 11111111 99 7 0 7 1 0000000000000000000 5 99 9 3 000 000000 2 55555555 11111111 5 11 99999999999 2 6666 88 8 3 2 0 5 5 00 77777777 00 5 8 3 333333 444 9999999999999999999 444 444 55555555 3 99999999999999 2 5555 0 11111 77777 9 5 7777 55555555 3 2 777 3 7 1 4 444 4 3333 11111 888 1 0 00 99 7 33 7 1 0 3333333333 4 22 333 2 7 4 4 999999999999 44 5 22 8 44 5 111111111 5 33333333333333333333 22 77777 5 77 777 5 7 666 9 1 0000 0 9 0 77777
consensus : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCGTCC--ACNCAT---CCAATA---GNC---CCGG-CGT--CC---GT---CCATCCATC--------CATCCATCCATCCG--C------A----TCC----ATC-CATCCATCCATCCAT-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCGTCC--ACNCAT---CCAATA---GNC---CCGG-CGT--CC---GT---CCATCCATC--------CATCCATCCATCCG--C------A----TCC----ATC-CATCCATCCATCCAT-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGGGGGGGGGTTCCTAACAACCCCCCCCT--------------------TCAAATAA-ATGAATCAATTCTACGCCTATAA--------ATACA--TGTCAAATGAAATTTCTGTTGCTATT--TCTAACATTCACTTGA---TTT-----TGTCATTTC--------TGCC--------TACCTATCTGACAATATTTATGTCGATCC-GTCCGTCCGTCCGTCC----GACAGCCCACCCACCAGTACG-----TCCATCCAA--AG-C-----AAC--ATCCGCCTGTCCGTCTGCCC--ACCCAT---CCAATA---GGC---CCAG-CGG--CT---GT---CCACTCATC--------GATCTTTCCATCCGAAC------A----TCC----ATT-CACCCATCCATCAATATACAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCATATCCCTCCGCACTAAACA--TACTAAATA---TTTCGT-ATTTCACCCCGAAACAACACAAAG---AAGAGCGTTGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-A--A-A--T-AGTTCAATGTTCATGTATTGCGTCAC----------AAAT-CAAGGGAGATAA--CA-ATTGTATACTT-TGTAGCCGCAGTTTGA-TA-AT--GATAG--TTT-GA-ATATCAATAA--AA-CGCATTTCGG-A-G-----TAAACGTGACAT-T--------------------GAGTAA--A----GATGC-TTATGTTCTG--TAA---TGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : --C------A----TCC----GTC-CGTCCATCAATCC----GCAATTTTGAATGTTt
gi|10 : A-----ATTTAAATA----C-TGCCACATTCCT-----TT---C---TACTAACTA---TTCCAT-GTTACATCCACGAACAAAACAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|10 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcATCCA---CGAACAAAACAAATGTC-A--A-AA-T-AGTCTAAGCCTCGTCTGTTACGTCAC----------ACATTCAAGGGAGGTAA--CA--TTTTGCACTT-TGTAGCCGCAATGTGATTA-AT--TCTAAC-TTT-CA-ATATTGATAA--AC-TACATTTCGG-AGG-----TAAATGTGATATAA--------------------GGGGAA--A----TGTGC-ATTTGTTCCA--TAT---TGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCAC----------AAAT-CAAGGGAGATAA--CA-GTTT-GCACTT-TTTAACCGCAGTGTGA-TACAT--GCTAA--TTTTGA-AAATCGATAA--AA-CGCATTTCGG-AAG-----CAAAGGTGCTAA-T--------------------GGGGGA--A----AATGT-TTATGTTCAA--TAA---TGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-C-----CACCAATCCGTCCGTCCGTTCGTCC--GTGAAT---CCAa
gi|12 : aacacacatcaTTATA-----ATTTAAA-AAAAACCTGCCACATCCCT----ACT---C----GCTAACTA---TTTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCTT-TTTTT-TT-TTCAATTTTCGTC-----AG-CA-------A--A-A--T-TGCGCAA-CTTTGTGTATGACGTCAC----------ACAT-CAAAGGAGGTAT--C--ATTGTGCAACT-TGTAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCT----ACT-------TACTAAACAAAGTTTCAG-GTTTCAACCAAAAACGACACGTCG---AAGCGTGAT-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-A--A-AA-T-AGCACCAGGTTAGTGTTTTGCGTCAC----------AAAT-CAAGGAAGGTAA--TG-AATTTGCACTT-TGTAGCCACAATGCGA-TA-AT--GCAAAG-TCT-GA-ATATCAATAA--AA-AGCATTTCGC-A-G-----TAAATGTGATAT-T--------------------GAGGAA--ATAATTATGC-TCTTGTTCAA--TAA---TGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCT----ACT---C----ACGTACCA---TTTCGT-GCTTCTCCCCAAAAAAACATAGTG---AAGCAC--T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-A--A-AA-T-AGCACAAGCTTCGTGTTTGACGCCAC----------AAAT-CGAGGGTGGTAA--CA--TTTTGCACTT-TGTAACCGGATTGTGA-TATAT--GCTAA--TTT-TTTATATCGATCA--AA-CGCATTTCGG-A-AA----TAAAAGTGAAAT-T--------------------GGAGAA-------TATGC-TTATGTTTTA--TAA---TGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GTT-AAA-AGAAGC-TATCACAACCCT----ACT---C---------------------------AC----AAAC--CA-AACA---AAGCACATT-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-A--A-AA-T-AGAGCAAGCTTCGTGTGTGACGTCAC----------AAAT-TAAAGGAG--------------------------CCGAAATGTGA-TA-ATATGCTAA--TTTTGA-ATAT--------AA-CGCATTTCAG-AAG-----TAAATGTAGTAT-T--------------------GGGTAT--A----GATGC-TTATGTTCAA--TAA---TGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cTGTCCAAACCTCCCATTAATTAAAAAGATCCTACGCCTATAA--------GTACA--GATCAAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCC--------TGCCTGTCTGACAATATATATA------T-GTCTGTCCGTACGACC----GACCACC--ACTGCCTGTACGACC-GTTCATTTAA--AA-T------AT--ATTCTTCAATTCGTCCGTC------CAT---CCGATA---GT-----TAG-CATTCCC---GC---CCACCc
gi|17 : ggggaggatggggactgttgtatcATGACGTCACAATTCAAGGAAAAT-CAAGGGAGATAATTCA-G---TGCGGTTAAATAGCAAGAGTATGA-AAGAT--GAT----TTT-GA-TTATCGATTA--AA-CGCATTTC------TCTTTTAAATATAAT-T-T---------------------AGGAAACA----GATGC-TTATATCCAA---AA---TGGTATTATTGA-A---AT----ACTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAa
gi|18 : agTTCGTGTATGGCGTCAT----------AACT-CAAGGGAGATCA--CA-ATTT-GCACTC-TGTAGCCGCAGTGTGA-CA--T--GCTAACTTTT-GA-ATATCGATAA--AA-CGCATTTCGGTT-G-----TAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGG--G----GATGT-TTATGTTTCA--TAA---TGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCC--GTGGTTGCCCA--CCTCCAATTA-TTGAAACGATAATACGCCTATAATACATGTAATACA--TTTGAAATGAAATTTCTAATGCAATT--TCTAACATGAGCTTGA---TAG-----TGTCATTTC--------TGactcttttcatataaaat
gi|2 : AGGTGTCCCTTTCAACCTCCCCCTA----G--GTTGACCT--CCTCCAACTA-TTGAAACGATCGTACGCCTAT-------------------------GATATTTCTAATGCTATT--TCCAACATGAGTTTCA---TAT-----TGTCATTTC--------TGCC--------TTCCGGCCTGACAATACCTAT-------C--TCCGTCGGACCGCCC----GTCCACCAACCAACCAGTACGACC-GTCAACCCAA--AT-C-----AGC--ATCCGGCTGTCCTTCCGTCC--ACATAT---CTAATA---GTCTTTCCGG-CAT--CC---ATATTCCATCCATC--------TATCAATTCACCAA--CCTTTCTACCTTTCC----ATC-AATCCATCCATCCAT-C-CATTTCGGAACGTTATA-----GTTGAAG-AGAAAC-TGTTACATTCCT----ACT---C---AAA-AAACA---TTTCAT-GTT-CACTTCAAACCAACACAACG---TAACACGTT-TTTTT-------AATC---------AAAGACAAATCGA-A--ATA--T-AGTGCAATCTTCGTGAAATGCATCAC----------AAAT-CAAGGGAAGTAG--CA-ACTTT-CAATT-TGTAGCAGCAATATGA-TA-GT------------------ATCGATAA--CA-CTCATTTCAG-A-G-----TAAATATGATAT-T--------------------AAAGAA--A----GATGC-GTATGTTCAA--AAA---TGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GAGGTGTCGCTCACAACCTCCCGCTCCCCAG--GTTGCCCA--CCTCCAATTA-TTGAAA-GATACTACGCCTATAATACATGTTATATA--TTTGAAATGACATTTTTAATGCTATT--TCTAACATGAGCTTGA---TAT-----TGTCATTTC--------TG
gi|21 : GCAATTTGTAATATTATACATTAGTTAAAA-CGAAGC-TGCCAAATCCCT----AC----C---CACTAAACG---TTTCGT-GTTTCA
gi|21 : cacTTCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaaacgtttcgtgt-G-----TAAATGGGATAA-T--------------------GAGAAA--A----AATGT-TTTTGTTCAA--TAA---TAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgC---GC---CAATCCATA--------CATCCATCTATCTA--C------A----TCC----ATC-CATCC------------GCAGTTATGAATGTTTTT-----GTT
gi|24 : cagccactTTTAAA-GGAAGC-TTTCATTTACCT----ACT---CATGTAC----CA---TTTCGT-GCTTCTCCCCAAAACAACACAGTG---AAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGAGGGGAGGTGTCCTTCACAACCTTCCACTTCTCAG--GTCGCCCA--CCCGCAATAA-TTGAAATGAACGTACCCCTATAG--------ATACA--TGCCAAATGAAATGTTTAAAGCTATT--TCTAACATGCAC--GA---CG-------GTCCACTC--------AA-------------------AACAACATATTT-------CTGTCCGTCCGCCCGTCCAATAGGTTGCCCAGCCGCNNNNNNNNNN-NNNNNNNNNN--NN-N-----NNN--NNNNNNNNNNNNNNNNNNNN--NNNNNN---NNNNNN---NNN---NNNN-NNN--NN---NN---NNNNNNNNN--------NNNNNNNNNNNNNN--N------N----NNN----NNN-NNNNNNNNNNNNNNNATGCAATTTGGAATGTTATA-----ATTTAAA-CGA-GC-TGCCACATCCCT----GCT---C----ACTAAACA---TTTCCTTGTTTCACCCCAAAACAACACAACG---AAGCACG----TTTT-TTATTCAATCTAAGTCGATAAAGACATATTGA-AATA-A--T-ATCAAAAGGTTTGTGCATGAAGTCAC----------AAAT-TAAGGGAGGTAA--CA-A-TTTGCACTG-TGTATCCGCACTGTGA-TA-AC--GCAAAG-TTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnncaaaacaa
gi|4 : cgtatcacaaccaacAACGTGTATTTGA---TGG-----TGACTTTTC--------TGCCCGTCTGCTTGCCTGTCTGGCAATATAAA-------------CGTCCGTCTATCC----GACCGCCCGCCCA-------------TCTAACCAA--A--------AAT--ATCCA-CCGTCCGTCCAGCC--GCTAATATACCAATT---TAT---CCA----T--TT---GT---GCATTAATCAATTA---TATCCGTCTGTCCG--------------TTC----ATC-CATCTATCCGTCC-------ATTTGGAATATT
gi|4 : TTGTG-----GTTTAGA-AGAAGC-TGCCACATAATT----ACT---A----ACTCACCA---TTTCGT-GTTACGCCCCAAAAT--CACAA-G---AA-CGCATT-TTTT--------AATCAAAGTCGATAAACACAAATTGCGA--A-A--T-AACTCAAGCTTCCTATATGACGTCAC----------AAAT-GAAGGGCGGTAA--CA-A-ATTGCACTT-TGTACCCACAATGTGA-TACAT--GCTAG--CTT-AG-GTAT--AT------------------------------TGTGATAC-T--------------------GAGGTA--A----GATGC-TTATGTTTAA--TAA---------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTAA--------ATATAACTTCCAAATGGAAGTTCTAATGCTGTT--TCTAACATTCACCTGA---TGG-----TGTACCTTC--------TGCCA-------T-----TCTGACAATATATACA------T-GCCTGTTATTCAGTCC----GACCACCAGCACGCCTGTGTGACC-GTCCATCTAA--AA-A-----AAC--ATCCATCCATCCTTCCATTC--ATCCAT---CC-ATT---GCA---ACGG-C----CC---GT---CCATCCACC--------
gi|5 : -TGCAATTTGGAATGTTTTT-----GTTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgcTATTATG-----GTTTAAA-AGAGGC-TGTCACGTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-A--A-A--TTAGTGCAATCTTCGTTTTTAACGTCAC----------AAAT-CAAGGGAGGTCA--CA--TTTTGACCCT-AGTAGCCGCAATGTGG-TACAT--GCTAA--TTTTGA-ATATCGATAC--A--CGTATTTCGG-AAG-----TAAATGTGA-----------------------------AA--A----------TTATGTTCGA--TAA---TG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTT-----TGTCATTTC--------TGCC--------TGCCTACGTGACAATATAAAT---------GTTTGTCCATCAGTCT----GACCGCCCACCCACCAGTATGACA-ATCCATCCAA--AG-C-----AAC--ATCCGTCTGTTCATCAG-CCAAACCCAT---CCAATA---GGC--------TGC--CT---GG---CCATCAATC--------TATCCATCCATTCA--C-------------------------CCATCCATCCATATGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT-------TACTAAACA---TTTCTT-GTTTCACCTCAAAACAACACAACA---AAGCACA---TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-A--A-A--T-AGCTCAAGGTTCATGTAGTGTGTCAC----------AAAT-CAAGGGAGGTAA--TA-ATTTT-CAATT-TGTAGCCGCAGTGTAG-TA-AT--GCAAAC-TTT-GA-ATACCAATAA--AGTTGCATTTCAG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GACGtaa
gi|6 : ttgaAA--A----GTTGC---AT-TTCAGAGTAAATGTGATATTGAGGA-A-------AGACGAA-C-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaat--G--GTTGCCCA--CCTCCAACTA-TTGAAACGATCCTACGCCT-------------------------ATGATATTTATGATGCTATT--TCTAACATGAGC--AA---TG-------------TC--------CGTC--------TGCCCGTCCACCAA
gi|7 : ccctaGTCCGTCTGCCC----GTCCACCAACCAACCAGTAGGACC-GTCAACCCAA--AT-C-----AGC--ATCCGTCTGTCCTTCCGCCC--ACATAT---CTAATA---GTCTTTCCGG-CAT--CCATAGT---CCATCCATCTTTCAATTCACCCACCTATCTG--CCT----A----TCCTTATATC-CATCCATCCATCCAT-T-----TCGGAATGTTATA-----GTTTAAA-AGACGC-TGTCACGTCCCT----ACT---C---AAC-AAACA---TTTCAT-GTT-CACCCCAAACCAACACAACG---TAATGCGTT-TTTTT-T-ATTCAA-------------AGACAAATCGA-A--ATA--T-AGAGCAATCTCCGTGTAATGTGTCAC----------AAAT-CAAGGGAGGTAA--CA-ACTTT-CAATT-TGTAGCGGCAAT------------------------A-GTATCGATAAGTAA----ATATCGG-A-G-----TAAATATGATAT-T--------------------GAAGAA--A----GGT-C-GTATGTTCAccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatTCAATCCAA--AT-TGTTGGAAC--ACCCGTACGTCC-----TCC--A---AT---CCA-------------------T--CC---AT---TCATCAAGC--------CATCCACCCATCCG--T------A----T------ATC-CATCCAT-CA-------GTAACTTGAAATGTT
gi|8 : tTA-----ATATAAA-CGAAGC-TGTCAAATCAC-----A---------TACTA-----------GT-GTTATATCCCAAAACAACACACTA---AAGCACGTT-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAA--A-A--T-AGCGCAAACGTCGTGTATGGCGTCAT----------AAAA-TAAAGGAGGCAA--TATGTTTT--ATGT-AGTTGTTGCAATG----TA-AT--GCTAT--CTT-----TA---ATAA--AA-CGC-------------------ATATGATAT-T--------------------ATGGAA--T----GATGCGTTATGTTCAA--TTA---TGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagCAACCAGTCAACCCAA--AAAC-----AAC--ATATGTCTGTCCGTCCGTCC--ACATAT---CTAATATATTTC---CCGGAAGT--CC---AT---CCATTCATC--------CATACATCAAT-----------------TCC----ATTGCATCCATCCATTCAT-T--AA----GGATGTTATA-----GTTTAAA-AGAAGC-GGTCACATCCCT----ACT---C---AAC-AAACA---TTTCAT-ATTTCACCCCAAACCAACACAGCG---TAGCACA----TTTT-TTATTC-------------AAAGACAAATCG--A--A-ATCT-AGCGCATGGTTCGTGTAATGCGTCAC----------AAAT-GAAGGGAGTTAA--CA-A-TTTGCATTT-TGTAGCGGCAAT---A-TA-AT--------------A-ATAT-----------------TCGG-A-G-----TAAATGTGATAT-T--------------------GAAGGT--A----TATGC-TTATGTTCAA--AAA---TGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc
Alignments
lowQualScore : 33333333 4444444444444444444 111111 11111111 22222222 44444444444 1111 11111111 4444444444444444444 22222222 33333333333333 22222 22222222 11 11 1111111111 111 111111111111 111111111 22222222222222222222 111 1111
lowQualScore : 3 88888888 77 5 3 0 0 1111111111111111111 0 66 2 2 777 888888 3 44444444 33333333 4 22 11111111111 0 0000 88 1 0 0 4 1 0 55 55555555 55 0 3 1 888888 666 1111111111111111111 666 666 44444444 0 22222222222222 0 8888 4 66666 66666 2 2 5555 55555555 7 2 444 0 2 6 1 555 1 9999 88888 222 0 4 00 33 5 44 2 1 1 0000000000 2 33 333 4 0 2 2 555555555555 99 2 22 1 33 2 333333333 2 00000000000000000000 33 55555 2 33 444 4 2 111 2 0 2222 3 2 1 77777
lowQualScore : . ........ .. . . . . ................... . .. . . ... ...... . ........ ........ . .. ........... . .... .. . . . . . . .. ........ .. . . . ...... ... ................... ... ... ........ . .............. . .... . ..... ..... . . .... ........ . . ... . . . . ... . .... ..... ... . . .. .. . .. . . . .......... . .. ... . . . . ............ .. . .. . .. . ......... . .................... .. ..... . .. ... . . ... . . .... . . . .....
lowQualScore : 2 11111111 99 7 0 7 1 0000000000000000000 5 99 9 3 000 000000 2 55555555 11111111 5 11 99999999999 2 6666 88 8 3 2 0 5 5 00 77777777 00 5 8 3 333333 444 9999999999999999999 444 444 55555555 3 99999999999999 2 5555 0 11111 77777 9 5 7777 55555555 3 2 777 3 7 1 4 444 4 3333 11111 888 1 0 00 99 7 33 7 1 0 3333333333 4 22 333 2 7 4 4 999999999999 44 5 22 8 44 5 111111111 5 33333333333333333333 22 77777 5 77 777 5 7 666 9 1 0000 0 9 0 77777
consensus : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCGTCC--ACNCAT---CCAATA---GNC---CCGG-CGT--CC---GT---CCATCCATC--------CATCCATCCATCCG--C------A----TCC----ATC-CATCCATCCATCCAT-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCGTCC--ACNCAT---CCAATA---GNC---CCGG-CGT--CC---GT---CCATCCATC--------CATCCATCCATCCG--C------A----TCC----ATC-CATCCATCCATCCAT-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGGGGGGGGGTTCCTAACAACCCCCCCCT--------------------TCAAATAA-ATGAATCAATTCTACGCCTATAA--------ATACA--TGTCAAATGAAATTTCTGTTGCTATT--TCTAACATTCACTTGA---TTT-----TGTCATTTC--------TGCC--------TACCTATCTGACAATATTTATGTCGATCC-GTCCGTCCGTCCGTCC----GACAGCCCACCCACCAGTACG-----TCCATCCAA--AG-C-----AAC--ATCCGCCTGTCCGTCTGCCC--ACCCAT---CCAATA---GGC---CCAG-CGG--CT---GT---CCACTCATC--------GATCTTTCCATCCGAAC------A----TCC----ATT-CACCCATCCATCAATATACAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCATATCCCTCCGCACTAAACA--TACTAAATA---TTTCGT-ATTTCACCCCGAAACAACACAAAG---AAGAGCGTTGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-A--A-A--T-AGTTCAATGTTCATGTATTGCGTCAC----------AAAT-CAAGGGAGATAA--CA-ATTGTATACTT-TGTAGCCGCAGTTTGA-TA-AT--GATAG--TTT-GA-ATATCAATAA--AA-CGCATTTCGG-A-G-----TAAACGTGACAT-T--------------------GAGTAA--A----GATGC-TTATGTTCTG--TAA---TGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : --C------A----TCC----GTC-CGTCCATCAATCC----GCAATTTTGAATGTTt
gi|10 : A-----ATTTAAATA----C-TGCCACATTCCT-----TT---C---TACTAACTA---TTCCAT-GTTACATCCACGAACAAAACAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|10 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcATCCA---CGAACAAAACAAATGTC-A--A-AA-T-AGTCTAAGCCTCGTCTGTTACGTCAC----------ACATTCAAGGGAGGTAA--CA--TTTTGCACTT-TGTAGCCGCAATGTGATTA-AT--TCTAAC-TTT-CA-ATATTGATAA--AC-TACATTTCGG-AGG-----TAAATGTGATATAA--------------------GGGGAA--A----TGTGC-ATTTGTTCCA--TAT---TGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCAC----------AAAT-CAAGGGAGATAA--CA-GTTT-GCACTT-TTTAACCGCAGTGTGA-TACAT--GCTAA--TTTTGA-AAATCGATAA--AA-CGCATTTCGG-AAG-----CAAAGGTGCTAA-T--------------------GGGGGA--A----AATGT-TTATGTTCAA--TAA---TGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-C-----CACCAATCCGTCCGTCCGTTCGTCC--GTGAAT---CCAa
gi|12 : aacacacatcaTTATA-----ATTTAAA-AAAAACCTGCCACATCCCT----ACT---C----GCTAACTA---TTTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCTT-TTTTT-TT-TTCAATTTTCGTC-----AG-CA-------A--A-A--T-TGCGCAA-CTTTGTGTATGACGTCAC----------ACAT-CAAAGGAGGTAT--C--ATTGTGCAACT-TGTAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCT----ACT-------TACTAAACAAAGTTTCAG-GTTTCAACCAAAAACGACACGTCG---AAGCGTGAT-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-A--A-AA-T-AGCACCAGGTTAGTGTTTTGCGTCAC----------AAAT-CAAGGAAGGTAA--TG-AATTTGCACTT-TGTAGCCACAATGCGA-TA-AT--GCAAAG-TCT-GA-ATATCAATAA--AA-AGCATTTCGC-A-G-----TAAATGTGATAT-T--------------------GAGGAA--ATAATTATGC-TCTTGTTCAA--TAA---TGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCT----ACT---C----ACGTACCA---TTTCGT-GCTTCTCCCCAAAAAAACATAGTG---AAGCAC--T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-A--A-AA-T-AGCACAAGCTTCGTGTTTGACGCCAC----------AAAT-CGAGGGTGGTAA--CA--TTTTGCACTT-TGTAACCGGATTGTGA-TATAT--GCTAA--TTT-TTTATATCGATCA--AA-CGCATTTCGG-A-AA----TAAAAGTGAAAT-T--------------------GGAGAA-------TATGC-TTATGTTTTA--TAA---TGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GTT-AAA-AGAAGC-TATCACAACCCT----ACT---C---------------------------AC----AAAC--CA-AACA---AAGCACATT-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-A--A-AA-T-AGAGCAAGCTTCGTGTGTGACGTCAC----------AAAT-TAAAGGAG--------------------------CCGAAATGTGA-TA-ATATGCTAA--TTTTGA-ATAT--------AA-CGCATTTCAG-AAG-----TAAATGTAGTAT-T--------------------GGGTAT--A----GATGC-TTATGTTCAA--TAA---TGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cTGTCCAAACCTCCCATTAATTAAAAAGATCCTACGCCTATAA--------GTACA--GATCAAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCC--------TGCCTGTCTGACAATATATATA------T-GTCTGTCCGTACGACC----GACCACC--ACTGCCTGTACGACC-GTTCATTTAA--AA-T------AT--ATTCTTCAATTCGTCCGTC------CAT---CCGATA---GT-----TAG-CATTCCC---GC---CCACCc
gi|17 : ggggaggatggggactgttgtatcATGACGTCACAATTCAAGGAAAAT-CAAGGGAGATAATTCA-G---TGCGGTTAAATAGCAAGAGTATGA-AAGAT--GAT----TTT-GA-TTATCGATTA--AA-CGCATTTC------TCTTTTAAATATAAT-T-T---------------------AGGAAACA----GATGC-TTATATCCAA---AA---TGGTATTATTGA-A---AT----ACTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAa
gi|18 : agTTCGTGTATGGCGTCAT----------AACT-CAAGGGAGATCA--CA-ATTT-GCACTC-TGTAGCCGCAGTGTGA-CA--T--GCTAACTTTT-GA-ATATCGATAA--AA-CGCATTTCGGTT-G-----TAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGG--G----GATGT-TTATGTTTCA--TAA---TGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCC--GTGGTTGCCCA--CCTCCAATTA-TTGAAACGATAATACGCCTATAATACATGTAATACA--TTTGAAATGAAATTTCTAATGCAATT--TCTAACATGAGCTTGA---TAG-----TGTCATTTC--------TGactcttttcatataaaat
gi|2 : AGGTGTCCCTTTCAACCTCCCCCTA----G--GTTGACCT--CCTCCAACTA-TTGAAACGATCGTACGCCTAT-------------------------GATATTTCTAATGCTATT--TCCAACATGAGTTTCA---TAT-----TGTCATTTC--------TGCC--------TTCCGGCCTGACAATACCTAT-------C--TCCGTCGGACCGCCC----GTCCACCAACCAACCAGTACGACC-GTCAACCCAA--AT-C-----AGC--ATCCGGCTGTCCTTCCGTCC--ACATAT---CTAATA---GTCTTTCCGG-CAT--CC---ATATTCCATCCATC--------TATCAATTCACCAA--CCTTTCTACCTTTCC----ATC-AATCCATCCATCCAT-C-CATTTCGGAACGTTATA-----GTTGAAG-AGAAAC-TGTTACATTCCT----ACT---C---AAA-AAACA---TTTCAT-GTT-CACTTCAAACCAACACAACG---TAACACGTT-TTTTT-------AATC---------AAAGACAAATCGA-A--ATA--T-AGTGCAATCTTCGTGAAATGCATCAC----------AAAT-CAAGGGAAGTAG--CA-ACTTT-CAATT-TGTAGCAGCAATATGA-TA-GT------------------ATCGATAA--CA-CTCATTTCAG-A-G-----TAAATATGATAT-T--------------------AAAGAA--A----GATGC-GTATGTTCAA--AAA---TGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GAGGTGTCGCTCACAACCTCCCGCTCCCCAG--GTTGCCCA--CCTCCAATTA-TTGAAA-GATACTACGCCTATAATACATGTTATATA--TTTGAAATGACATTTTTAATGCTATT--TCTAACATGAGCTTGA---TAT-----TGTCATTTC--------TG
gi|21 : GCAATTTGTAATATTATACATTAGTTAAAA-CGAAGC-TGCCAAATCCCT----AC----C---CACTAAACG---TTTCGT-GTTTCA
gi|21 : cacTTCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaaacgtttcgtgt-G-----TAAATGGGATAA-T--------------------GAGAAA--A----AATGT-TTTTGTTCAA--TAA---TAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgC---GC---CAATCCATA--------CATCCATCTATCTA--C------A----TCC----ATC-CATCC------------GCAGTTATGAATGTTTTT-----GTT
gi|24 : cagccactTTTAAA-GGAAGC-TTTCATTTACCT----ACT---CATGTAC----CA---TTTCGT-GCTTCTCCCCAAAACAACACAGTG---AAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGAGGGGAGGTGTCCTTCACAACCTTCCACTTCTCAG--GTCGCCCA--CCCGCAATAA-TTGAAATGAACGTACCCCTATAG--------ATACA--TGCCAAATGAAATGTTTAAAGCTATT--TCTAACATGCAC--GA---CG-------GTCCACTC--------AA-------------------AACAACATATTT-------CTGTCCGTCCGCCCGTCCAATAGGTTGCCCAGCCGCNNNNNNNNNN-NNNNNNNNNN--NN-N-----NNN--NNNNNNNNNNNNNNNNNNNN--NNNNNN---NNNNNN---NNN---NNNN-NNN--NN---NN---NNNNNNNNN--------NNNNNNNNNNNNNN--N------N----NNN----NNN-NNNNNNNNNNNNNNNATGCAATTTGGAATGTTATA-----ATTTAAA-CGA-GC-TGCCACATCCCT----GCT---C----ACTAAACA---TTTCCTTGTTTCACCCCAAAACAACACAACG---AAGCACG----TTTT-TTATTCAATCTAAGTCGATAAAGACATATTGA-AATA-A--T-ATCAAAAGGTTTGTGCATGAAGTCAC----------AAAT-TAAGGGAGGTAA--CA-A-TTTGCACTG-TGTATCCGCACTGTGA-TA-AC--GCAAAG-TTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnncaaaacaa
gi|4 : cgtatcacaaccaacAACGTGTATTTGA---TGG-----TGACTTTTC--------TGCCCGTCTGCTTGCCTGTCTGGCAATATAAA-------------CGTCCGTCTATCC----GACCGCCCGCCCA-------------TCTAACCAA--A--------AAT--ATCCA-CCGTCCGTCCAGCC--GCTAATATACCAATT---TAT---CCA----T--TT---GT---GCATTAATCAATTA---TATCCGTCTGTCCG--------------TTC----ATC-CATCTATCCGTCC-------ATTTGGAATATT
gi|4 : TTGTG-----GTTTAGA-AGAAGC-TGCCACATAATT----ACT---A----ACTCACCA---TTTCGT-GTTACGCCCCAAAAT--CACAA-G---AA-CGCATT-TTTT--------AATCAAAGTCGATAAACACAAATTGCGA--A-A--T-AACTCAAGCTTCCTATATGACGTCAC----------AAAT-GAAGGGCGGTAA--CA-A-ATTGCACTT-TGTACCCACAATGTGA-TACAT--GCTAG--CTT-AG-GTAT--AT------------------------------TGTGATAC-T--------------------GAGGTA--A----GATGC-TTATGTTTAA--TAA---------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTAA--------ATATAACTTCCAAATGGAAGTTCTAATGCTGTT--TCTAACATTCACCTGA---TGG-----TGTACCTTC--------TGCCA-------T-----TCTGACAATATATACA------T-GCCTGTTATTCAGTCC----GACCACCAGCACGCCTGTGTGACC-GTCCATCTAA--AA-A-----AAC--ATCCATCCATCCTTCCATTC--ATCCAT---CC-ATT---GCA---ACGG-C----CC---GT---CCATCCACC--------
gi|5 : -TGCAATTTGGAATGTTTTT-----GTTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgcTATTATG-----GTTTAAA-AGAGGC-TGTCACGTgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-A--A-A--TTAGTGCAATCTTCGTTTTTAACGTCAC----------AAAT-CAAGGGAGGTCA--CA--TTTTGACCCT-AGTAGCCGCAATGTGG-TACAT--GCTAA--TTTTGA-ATATCGATAC--A--CGTATTTCGG-AAG-----TAAATGTGA-----------------------------AA--A----------TTATGTTCGA--TAA---TG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTT-----TGTCATTTC--------TGCC--------TGCCTACGTGACAATATAAAT---------GTTTGTCCATCAGTCT----GACCGCCCACCCACCAGTATGACA-ATCCATCCAA--AG-C-----AAC--ATCCGTCTGTTCATCAG-CCAAACCCAT---CCAATA---GGC--------TGC--CT---GG---CCATCAATC--------TATCCATCCATTCA--C-------------------------CCATCCATCCATATGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT-------TACTAAACA---TTTCTT-GTTTCACCTCAAAACAACACAACA---AAGCACA---TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-A--A-A--T-AGCTCAAGGTTCATGTAGTGTGTCAC----------AAAT-CAAGGGAGGTAA--TA-ATTTT-CAATT-TGTAGCCGCAGTGTAG-TA-AT--GCAAAC-TTT-GA-ATACCAATAA--AGTTGCATTTCAG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GACGtaa
gi|6 : ttgaAA--A----GTTGC---AT-TTCAGAGTAAATGTGATATTGAGGA-A-------AGACGAA-C-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaat--G--GTTGCCCA--CCTCCAACTA-TTGAAACGATCCTACGCCT-------------------------ATGATATTTATGATGCTATT--TCTAACATGAGC--AA---TG-------------TC--------CGTC--------TGCCCGTCCACCAA
gi|7 : ccctaGTCCGTCTGCCC----GTCCACCAACCAACCAGTAGGACC-GTCAACCCAA--AT-C-----AGC--ATCCGTCTGTCCTTCCGCCC--ACATAT---CTAATA---GTCTTTCCGG-CAT--CCATAGT---CCATCCATCTTTCAATTCACCCACCTATCTG--CCT----A----TCCTTATATC-CATCCATCCATCCAT-T-----TCGGAATGTTATA-----GTTTAAA-AGACGC-TGTCACGTCCCT----ACT---C---AAC-AAACA---TTTCAT-GTT-CACCCCAAACCAACACAACG---TAATGCGTT-TTTTT-T-ATTCAA-------------AGACAAATCGA-A--ATA--T-AGAGCAATCTCCGTGTAATGTGTCAC----------AAAT-CAAGGGAGGTAA--CA-ACTTT-CAATT-TGTAGCGGCAAT------------------------A-GTATCGATAAGTAA----ATATCGG-A-G-----TAAATATGATAT-T--------------------GAAGAA--A----GGT-C-GTATGTTCAccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaatTCAATCCAA--AT-TGTTGGAAC--ACCCGTACGTCC-----TCC--A---AT---CCA-------------------T--CC---AT---TCATCAAGC--------CATCCACCCATCCG--T------A----T------ATC-CATCCAT-CA-------GTAACTTGAAATGTT
gi|8 : tTA-----ATATAAA-CGAAGC-TGTCAAATCAC-----A---------TACTA-----------GT-GTTATATCCCAAAACAACACACTA---AAGCACGTT-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAA--A-A--T-AGCGCAAACGTCGTGTATGGCGTCAT----------AAAA-TAAAGGAGGCAA--TATGTTTT--ATGT-AGTTGTTGCAATG----TA-AT--GCTAT--CTT-----TA---ATAA--AA-CGC-------------------ATATGATAT-T--------------------ATGGAA--T----GATGCGTTATGTTCAA--TTA---TGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagCAACCAGTCAACCCAA--AAAC-----AAC--ATATGTCTGTCCGTCCGTCC--ACATAT---CTAATATATTTC---CCGGAAGT--CC---AT---CCATTCATC--------CATACATCAAT-----------------TCC----ATTGCATCCATCCATTCAT-T--AA----GGATGTTATA-----GTTTAAA-AGAAGC-GGTCACATCCCT----ACT---C---AAC-AAACA---TTTCAT-ATTTCACCCCAAACCAACACAGCG---TAGCACA----TTTT-TTATTC-------------AAAGACAAATCG--A--A-ATCT-AGCGCATGGTTCGTGTAATGCGTCAC----------AAAT-GAAGGGAGTTAA--CA-A-TTTGCATTT-TGTAGCGGCAAT---A-TA-AT--------------A-ATAT-----------------TCGG-A-G-----TAAATGTGATAT-T--------------------GAAGGT--A----TATGC-TTATGTTCAA--AAA---TGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc
blockSeqs : G CCCGTG AA A A TACATGTAATACATTTG AA C T AAG TTTTTG C TGCCTGCT CGTCTGCT G TG TATG AATA AA T A C CC TTGTTGG CA G T AAACCC ATA TATTTCCCGGAAGT ATA ATT TTTCAATT CCTTTCTACCTT TTAT G NNATG CATTA T C . CATGT T C AAG T A A AAT T CTT TTTT TTC G CG AT T TC T G T AATTCAAGGA T TT TGT G A T ATATGCTAA TG T TG A GT T TCTTT A GGTGGTGGGGGGGGGGGGGG AC TAATT G AG ATG T T TGT A CAA A A A TAAAA
blockSeqs : C CCCCAG . . C TACATGTTATATATTTG . A T . G A . A T GG TCTG . CA A . C . AAC . G T GTGA . GTCTTTCCGGCAT . . AATTA CCTA . . ATATG . . . . CT T C . . A C . G GAT TTTT CAA T CA . T A . G T . . . GT G . . ATTCTAAC TG . CG A . . AGG . . . T . . . A . AT . CAG C . T .
blockSeqs : G TCTCAG . . C ATATAACTTCC . A T . T A . . G TG CATG . CG N . A . CC . T T ACAT . GTCTTTCCGGCAT . . . CA . . ATC . . . . CA T A . . T T . A ATT TTTT CAA T C . . A . G G . . . AT G . . CATGCTAA TG . CA A . . AAG . . . A . . . T . TC . CAC C . T .
blockSeqs : A AG . . T GTACAGATC . A T . T A . . G TA TC . AG T . N . AT . N N NNNN . GTTAGCATTC . . . CA . . ATT . . . . CC G C . . T C . A GTT TTTT TAA T G . . A . G T . . . AA G . . ATGCAAAG C . CG C . . AAA . . . T . . . T . TA . AA G . T .
blockSeqs : . . C ATACATGCC . C T . G C . . G CG TG . CA A . T . TC . G G GCTA . NNNNNNNNNN . . . NN . . ATT . . . . CA T A . . T C . A ATT TTTT CAA C C . . A . G G . . . AT G . . TATGCTAA G . CG T . . AAG . . . G . . . T . TT . AA T . G .
blockSeqs : . . . . . T C . G T . . . . . . AA A . C . NN . T T ATCC . GCAACGGC . . . TA . . G . . . . CA T A . . T T . A GTT TTTT TAA T C . . . . T G . . . AC G . . TGCTAACT T . CG A . . TTG . . . G . . . T . TT . CA A . C .
blockSeqs : . . C T . T C . . . . . . . . C . AA . A C ACAT . TATCCAT . . . C . . G . . . . C T A . . T C . G GTT TTT AAA T A . . . . G G . . . AT G . . ACGCAAAG G . CG A . . AAG . . . G . . . A . TT . TA C . T .
blockSeqs : A . . . A . . A . GC . T T ACAT . GGCTGC . . . . . . G . . . . T T C . . A C . A T TT CAA T A . . . . G G . . . AC G . . CATGCTAG G . CA T . . AG . . . G . . . A . AT . CA T . G .
blockSeqs : . . . . . . A . TC . G T C . T . . . . . . . . . . . C T A . . T C . G G T CGA A C . . . . T T . . . T G . . CATGCTAA G . CG A . . AG . . . A . . . T . TC . AA A . G .
blockSeqs : A . . . . . A . . . . . . . C . A . . A T . A A T CAA C A . . . . G G . . . T G . . ATGCAAAC A . CA A . . AG . . . G . . . A . . . C C . T .
blockSeqs : . . . . C . A . . T C . A A . CA C A . . . . T G . . . G G . . ATGCTAT G . CG A . . AG . . . G . . . G . . . A C . C .
blockSeqs : . . . . A . . . . . . . . . C . . . . . A A . . . A . . . GATGAT . . . A . . AG . . . G . . . A . . . A A . T .
blockSeqs : . . . . T . . . . . . . . . . . . G T . . . A . . . GT . . . . . . . . . . G . . . . . . . . . . T
blockSeqs : . . . T . . . . . . . . . T . . . T . . . AT . . . . . . . . . . G . . . . .
blockSeqs : . G . . . A . . . . . . . . . . . . . T .
blockSeqs : T . . . . . . . . .
blockSeqCons : CCCCAG** ATACATTC*********** TATG******* GCTCCGGCAT********* CA************ GT*** **** C******* GTT* TTTT* AT* NNTNNNAN**** AG*******
originalCons : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCC--G--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAA--------ATACA--TNTCAAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATAT-------C-GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCGTCC--ACNCAT---CCAATA---GNC---CCGG-CGT--CC---GT---CCATCCATC--------CATCCATCCATCCG--C------A----TCC----ATC-CATCCATCCATCCAT-TGCAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACT---C---TACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CA-ATTTTGCACTT-TGTAGCCGCAATGTGA-TA-AT--GCTAA--TTT-GA-ATATCGATAA--AA-CGCATTTCGG-A-G-----TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
finalCons : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCCCAG--GTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATAAATACATTC-----------AAATGAAATTTCTAATGCTATT--TCTAACATGCGCTTGA---TGT-----TGTCATTTC--------TGCC--------TGCCTGTCTGACAATATATATATG-------TCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCCGTCCGTCC--ACNCAT---CCAATAGCTCCGGCAT---------CC---GT---CCATCCATC--------CATCCATCCATCCGCA------------TCC----ATC-CATCCATCCATCCGT---CAATTTGGAATGTTATA-----GTTTAAA-AGAAGC-TGTCACATCCCT----ACTC-------ACTAAACA---TTTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTTTT-ATTCAATCCAAGTCGATAAAGACAAATCGC-A--A-A--T-AGCGCAAGCTTCGTGTATNGCGTCAC----------AAAT-CAAGGGAGGTAA--CAAT-TTTGCACTT-TGTAGCCGCAATGTGA-TANNTNNNAN----TTT-GA-ATATCGATAA--AA-CGCATTTCGGAG-------TAAATGTGATAT-T--------------------GAGGAA--A----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Alignments
lowQualScore : 6666666666666666666666666666666 1111111 44444444 111111111 1111 111111 11111111 44444444444444 111111111 55555555555555555555555 1111 11111 111111111 11111 11 11111 333333333 1111111111 22222222222222222222 111 1111
lowQualScore : 8 5 3 77 5 3 0 0000000000000000000000000000000 0 66 2 2 777 3333333 3 11111111 4 22 1 777777777 0000 333333 1 0 0 4 1 0 55 77777777 55 0 7777 0 999999 666 1 77777777777777 9999 7777777 555555555 4 44444444444444444444444 1111 00000 77777 33 2 2 1 1 555 111111111 2 1 1 555 1 44 3 55555 222 0 4 00 55555 2 1 1 2 33 7777777 0 2 2 000000000 99 2 00 1 33 2 1111111111 2 2 00000000000000000000 88888 2 33 444 4 2 111 2 0 2222 3 2 1 77777
lowQualScore : . . . .. . . . ............................... . .. . . ... ....... . ........ . .. . ......... .... ...... . . . . . . .. ........ .. . .... . ...... ... . .............. .... ....... ......... . ....................... .... ..... ..... .. . . . . ... ......... . . . ... . .. . ..... ... . . .. ..... . . . . .. ....... . . . ......... .. . .. . .. . .......... . . .................... ..... . .. ... . . ... . . .... . . . .....
lowQualScore : 2 2 7 99 7 0 7 1111111111111111111111111111111 5 11 9 3 000 8888888 2 22222222 5 11 7 444444444 6666 111111 9 2 1 4 6 5 55 11111111 55 5 7777 4 000000 444 1 99999999999999 6666 1111111 444444444 4 66666666666666666666666 5555 88888 77777 99 9 7 9 3 000 444444444 9 8 4 444 4 99 3 55555 888 1 0 00 00000 7 1 0 4 22 6666666 7 4 4 444444444 44 5 66 8 44 5 7777777777 5 5 33333333333333333333 99999 5 77 777 5 7 666 9 1 0000 0 9 0 77777
consensus : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCCCAGGTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATA--------A--------ATACA---T-TC-AAATGAAATTTCTAATGCTATTTCTAA--CATGCGCTTGA---TGTT-----GTCATTTCTGCC--------TGCCTGTCTGACAATATATATAT------GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCC----GTCCGTCCA--CNCAT---CCAATAG---N---T---CCGGCAT--CC---G---TCCATCCATC--------CATC-CATCCATCCG--C------A----TCCGTC-CATCCATCCATCCGT---CAATTT-G---GAATGTTATA-----GT--T-TAAAAGAAGC-TGTCACATCCCTACTCACTAAACA---T---------TTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-AA--A--T-AGCGCAAGCTTCGTGTATNGCGTCACAAAT-CAAGGGAGGTAA--CA-ATTTTGCACTTTG-TAGCCGCAATGTGA-TAN--TGCTANTTT-GA-ATATCGATAA--AA-CGCATTTC-----GG-A-G-TAAATGTGATAT-T--------------------GAGGAAA----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
Reference ( family-1213 ) : GGGGGGGGAGGTGTCCCTCACAACCTCCCGCTCCCCAGGTTGCCCA--CCTCCAATTA-TTGAAACGATCCTACGCCTATA--------A--------ATACA---T-TC-AAATGAAATTTCTAATGCTATTTCTAA--CATGCGCTTGA---TGTT-----GTCATTTCTGCC--------TGCCTGTCTGACAATATATATAT------GTCCGTCCGTCCGTCC----GACCGCCCGCCCGCCAGTACGACC-GTCCACCCAA--AN-C-----AAC--ATCCGTCCGTCC----GTCCGTCCA--CNCAT---CCAATAG---C---T---CCGGCAT--CC---G---TCCATCCATC--------CATC-CATCCATCCG--C------A----TCCATC-CATCCATCCATCCGT---CAATTT-G---GAATGTTATA-----GT--T-TAAAAGAAGC-TGTCACATCCCTACTCACTAAACA---T---------TTCGT-GTTTCACCCCAAAACAACACAACG---AAGCGCGTT-TTTTT-TTATTCAATCCAAGTCGATAAAGACAAATCGC-AA--A--T-AGCGCAAGCTTCGTGTATNGCGTCACAAAT-CAAGGGAGGTAA--CA-ATTTTGCACTTTG-TAGCCGCAATGTGA-TANN-TNNNANTTT-GA-ATATCGATAA--AA-CGCATTTC-----GG-A-G-TAAATGTGATAT-T--------------------GAGGAAA----GATGC-TTATGTTCAA--TAA---TGATATTANTGA-AT-TAT-AAAACGAAAC-A-TTACAACTATACAC-AATTNCATTGCT-----TATGACCTTTAA
gi|1 : GGGGGGGGGGGTTCCTAACAACCCCCCCCT------------------TCAAATAA-ATGAATCAATTCTACGCCTATA--------A--------ATACA---TGTC-AAATGAAATTTCTGTTGCTATTTCTAA--CATTCACTTGA---TTTT-----GTCATTTCTGCC--------TACCTATCTGACAATATTTATGTCGATCCGTCCGTCCGTCCGTCC----GACAGCCCACCCACCAGTACG-----TCCATCCAA--AG-C-----AAC--ATCCGCCTGTCC----GTCTGCCCA--CCCAT---CCAATAG---G---C---CCAGCGG--CT---G---TCCACTCATC--------GATC-TTTCCATCCGAAC------A----TCCATT-CACCCATCCATCAATATACAATTT-G---GAATGTTATA-----GT--T-TAAAAGAAGC-TGTCATATCCCTCCGCACTAAACA---TACTAAATATTTCGT-ATTTCACCCCGAAACAACACAAAG---AAGAGCGTTGTTTTTATTATTCAATCTGAGTCGATAAAGACAAATAAC-AA--A--T-AGTTCAATGTTCATGTATTGCGTCACAAAT-CAAGGGAGATAA--CA-ATTGTATACTTTG-TAGCCGCAGTTTGA-TAA--TGATAGTTT-GA-ATATCAATAA--AA-CGCATTTC-----GG-A-G-TAAACGTGACAT-T--------------------GAGTAAA----GATGC-TTATGTTCTG--TAA---TGATATTAATGA-AT-TAG-AAAACTAAAC-A-TTACAACTATACAC-AATTACATTGCT-----TATGACCTTTAA
gi|10 : --C------A----TCCGTC-CGTCCATCAATCCG----CAATTT-T---GAATGTTt
gi|10 : ATCCA---CGAACAAAACAAATGTC-AA--AA-T-AGTCTAAGCCTCGTCTGTTACGTCACACATTCAAGGGAGGTAA--CA--TTTTGCACTTTG-TAGCCGCAATGTGATTAAT-TCTAACTTT-CA-ATATTGATAA--AC-TACATTTC-----GG-AGG-TAAATGTGATATAA--------------------GGGGAAA----TGTGC-ATTTGTTCCA--TAT---TGATAATA-TGG-ATGTAT-AAACCAAAACAA-TCAAAACTATATGC-AATTATTTTGCTTAAAATATGATCTTTAAtttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttacatccacgaacaaaacaaatgtcaaaatagtctaagcctcgtctgttacgtcacacattcaagggaggtaacattttgcactttgtagccgcaatgtgattaattctaactttcaatattgataaactacatttcggaggtaaatgtgatataaggggaaatgtgcatttgttccatattgataatatggatgtataaaccaaaacaatcaaaactatatgcaattattttgcttaaaatatgatctttaaa
gi|11 : catccgtccgtccatcaatccgcaattttgaatgtttttgtcgaacaacttgatgttgtttcgttttctatgacatatcagtccatactttttaaagcttctcgcaatttaaatactgccacattcctttctactaactattccatgttac--T-AGCGCAAGCTTCGTGTATTACGTCACAAAT-CAAGGGAGATAA--CA-GTTT-GCACTTTT-TAACCGCAGTGTGA-TACA-TGCTAATTTTGA-AAATCGATAA--AA-CGCATTTC-----GG-AAG-CAAAGGTGCTAA-T--------------------GGGGGAA----AATGT-TTATGTTCAA--TAA---TGATATTATTGA-AA-TAT-AAAATGACCA-A-TTGCAACTATACAC-AATTTCATAGCT-----TGTGATCTTTAAa
gi|12 : caatctggaatgtttttgttgcgacactttatgtagttccgtctcaaccgtccttattttctaaagcttcttatagttacaaaacatctttcatctttcctcacaaacttgtttgtgttggacaaaagcactttttatacaatcC-ATCCACTCAACCAC-C-----CACCAATCCGTCCGTCC----GTTCGTCCG--TGAAT---CCAa
gi|12 : aacacacatcaTTATA-----AT--T-TAAAAAAAACCTGCCACATCCCTACTCGCTAACTA---T---------TTCGT-GTTACACCCCAAAGCAACACAAAGAATAATCTTCTT-TTTTT-TT-TTCAATTTTCGTC-----AG-CA-------AA--A--T-TGCGCAA-CTTTGTGTATGACGTCACACAT-CAAAGGAGGTAT--C--ATTGTGCAACTTG-TAGCCGCATTGTGA-caaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcttataatttaaaaaaaacctgccacatccctactcgctaactatttcgtgttacaccccaaagcaacacaaagaataatcttctttttttttttcaattttcgtcagcaaaattgcgcaactttgtgtatgacgtcacacatcaaaggaggtatcattgtgcaacttgtagccgcattgtga
gi|13 : aacacacatcacatccactcaaccacccaccaatccgtccgtccgttcgtccgtgaatccacaaaatcgtgattttgattggggggggggggggtgcgatactttatatgaacttattcgcctttattttctaaagcttcAGT-TCTCACATCCCTACTTACTAAACAAAGT---------TTCAG-GTTTCAACCAAAAACGACACGTCG---AAGCGTGAT-TTT-----ATTTAATCCAAGTCGATAAAGACAAATTGG-AA--AA-T-AGCACCAGGTTAGTGTTTTGCGTCACAAAT-CAAGGAAGGTAA--TG-AATTTGCACTTTG-TAGCCACAATGCGA-TAAT-GCAAAGTCT-GA-ATATCAATAA--AA-AGCATTTC-----GC-A-G-TAAATGTGATAT-T--------------------GAGGAAATAATTATGC-TCTTGTTCAA--TAA---TGATATTGATGA-AT-CAT-AAAATGAAA--------AATTATACACAAATTTCACTGCT-----TATGGCCT
gi|14 : AAGC-TGTCATATACCTACTCACGTACCA---T---------TTCGT-GCTTCTCCCCAAAAAAACATAGTG---AAGCAC--T-TTTTT-TTA----ATCCAAGTCGATAAACGCAGATTGC-AA--AA-T-AGCACAAGCTTCGTGTTTGACGCCACAAAT-CGAGGGTGGTAA--CA--TTTTGCACTTTG-TAACCGGATTGTGA-TATA-TGCTAATTT-TTTATATCGATCA--AA-CGCATTTC-----GG-A-AATAAAAGTGAAAT-T--------------------GGAGAA-----TATGC-TTATGTTTTA--TAA---TGAGATAATTAA-AT-AAC-AAAATGAAAA-A-TTACAACTATACAC-TGTTTCATTGCT-----
gi|15 : TTAAA-----GT--T--AAAAGAAGC-TATCACAACCCTACTCAC------------------------------------AAAC--CA-AACA---AAGCACATT-TTT-----ATTAAATCTAAGTCGATAAACACAAATTGC-AA--AA-T-AGAGCAAGCTTCGTGTGTGACGTCACAAAT-TAAAGGAG--------------------------CCGAAATGTGA-TAATATGCTAATTTTGA-ATAT--------AA-CGCATTTC-----AG-AAG-TAAATGTAGTAT-T--------------------GGGTATA----GATGC-TTATGTTCAA--TAA---TGATATTTTTGA-AT-TACAAAAAGGAAAC-A-TAAGAACTATACAC-AATTGCATTGCT-----TATGACCTTTAAgacatt
gi|16 : cTGTCCAAACCTCCCATTAATTAAAAAGATCCTACGCCTATA--------A--------GTACA---GATC-AAATGTAATTTCTAATGATATTAAAAAAACCCGCGCTTGAAAGTGTTTTTGTGTCCTTTCTGCCTGCTTGCCTGCCTGTCTGACAATATATATAT------GTCTGTCCGTACGACC----GACCACC--ACTGCCTGTACGACC-GTTCATTTAA--AA-T------AT--ATTCTTCAATTC----GTCCGTC------CAT---CCGATAG---T---T-----AGCATTCCC---G---CCCACCc
gi|17 : ggggaggatggggactgttgtatcAAAT-CAAGGGAGATAATTCA-GT---GCGGTTAAATAGCAAGAGTATGA-AAGA-TG--ATTTT-GA-TTATCGATTA--AA-CGCATTTCTCTTT-------TAAATATAAT-T-T---------------------AGGAAACA--GATGC-TTATATCCAA---AA---TGGTATTATTGA-A---AT-A---CTATAC----TATAGCTTTTCCT-TATTCCATTGCT-----TATGACCTTTAAa
gi|18 : agatgacgtcacaattcaaggaTTCGTGTATGGCGTCATAACT-CAAGGGAGATCA--CA-ATTT-GCACTCTG-TAGCCGCAGTGTGA-CATG-CTAACTTTT-GA-ATATCGATAA--AA-CGCATTTC-----GGTT-G-TAAATGTGATAT-TGGTGGTGGGGGGGGGGGGGGGGGGGGG----GATGT-TTATGTTTCA--TAA---TGATATTATTAA-Agt
gi|19 : gGTCCCTCACAACCTCCCGCTCCCGTGGTTGCCCA--CCTCCAATTA-TTGAAACGATAATACGCCTATAATACATGTA--------ATACA---T-TTGAAATGAAATTTCTAATGCAATTTCTAA--CATGAGCTTGA---TAGT-----GTCATTTCTGactcttttcatataaaat
gi|2 : AGGTGTCCCTTTCAACCTCCC----CCTAGGTTGACCT--CCTCCAACTA-TTGAAACGATCGTACGCCTAT-----------------------------------GATATTTCTAATGCTATTTCCAA--CATGAGTTTCA---TATT-----GTCATTTCTGCC--------TTCCGGCCTGACAATACCTATCT--------CCGTCGGACCGCCC----GTCCACCAACCAACCAGTACGACC-GTCAACCCAA--AT-C-----AGC--ATCCGGCTGTCC----TTCCGTCCA--CATAT---CTAATAGTCTT---T---CCGGCAT--CC---ATATTCCATCCATC--------TATC-AATTCACCAA--CCTTTCTACCTTTCCATC-AATCCATCCATCCAT---CCATTTCG---GAACGTTATA-----GT--T-GAAGAGAAAC-TGTTACATTCCTACTCAAAAAACA---T---------TTCAT-G-TTCACTTCAAACCAACACAACG---TAACACGTT-TTTTT-------AATC---------AAAGACAAATCGA-AAT-A--T-AGTGCAATCTTCGTGAAATGCATCACAAAT-CAAGGGAAGTAG--CA-ACTTT-CAATTTG-TAGCAGCAATATGA-TAG----------------TATCGATAA--CA-CTCATTTC-----AG-A-G-TAAATATGATAT-T--------------------AAAGAAA----GATGC-GTATGTTCAA--AAA---TGATATTAATGA-AT-TAT-AAAATGAAA--A-TTAAAACTAAACAC-AGTTTCAacaat
gi|20 : GAGGTGTCGCTCACAACCTCCCGCTCCCCAGGTTGCCCA--CCTCCAATTA-TTGAAA-GATACTACGCCTATA--------ATACATGTTATATA---T-TTGAAATGACATTTTTAATGCTATTTCTAA--CATGAGCTTGA---TATT-----GTCATTTCTG
gi|21 : ---CAATTT-G---TAATATTATACATTAGT--T-AAAACGAAGC-TGCCAAATCCCTACCCACTAAACG---T---------TTCGT-GTTTCA
gi|21 : cacgTTCAA--CAAGTCGATAAAGACAAATacaagtcgataaagacaaattattgttaaa
gi|22 : cacgcaatttgtaatattatacattagttaaaacgaagctgccaaatccctacccactaaacgtttcgtgt-G-TAAATGGGATAA-T--------------------GAGAAAA----AATGT-TTTTGTTCAA--TAA---TAATAT---------------AAACGAGAT-A-TTACAACGATACAC-AATTGCATTGCT-----TATGGCCTTTAAtattgttaaa
gi|23 : tcgCAC--TC---G---CCAATCCATA--------CATC-CATCTATC--------------------TA-CATCCATCCATCCG----CAGTTA-T---GAATGTTTTT-----GT--T-
gi|24 : cagcT--T-TAAAGGAAGC-TTTCATTTACCTACTCATGTACCA---T---------TTCGT-GCTTCTCCCCAAAACAACACAGTG---AAGCacgacacttaacgaaatgtcttctca
gi|3 : agtGGGAGGGGAGGTGTCCTTCACAACCTTCCACTTCTCAGGTCGCCCA--CCCGCAATAA-TTGAAATGAACGTACCCCTATA--------G--------ATACA---TGCC-AAATGAAATGTTTAAAGCTATTTCTAA--CATGCAC--GA---CG-------GTCCACTCAA-------------------AACAACATATTTCT------GTCCGTCCGCCCGTCCAATAGGTTGCCCAGCCGCnnnnnnnnnncaaaacaa
gi|3 : cgtatcacaaccaac---CAATTT-G---GAATGTTATA-----AT--T-TAAACGA-GC-TGCCACATCCCTGCTCACTAAACA---T---------TTCCTTGTTTCACCCCAAAACAACACAACG---AAGCACGTT-TTTT----ATTCAATCTAAGTCGATAAAGACATATTGA-AATAA--T-ATCAAAAGGTTTGTGCATGAAGTCACAAAT-TAAGGGAGGTAA--CA-ATTT-GCACTGTG-TATCCGCACTGTGA-TAAC-GCAAAGTTT-GA-ATATCAATTA--AA-CGCATTTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgcaatttggaatgttataatttaaacgagctgccacatccctgctcactaaacatttccttgtttcaccccaaaacaacacaacgaagcacgttttttattcaatctaagtcgataaagacatattgaaataatatcaaaaggtttgtgcatgaagtcacaaattaagggaggtaacaatttgcactgtgtatccgcactgtgataacgcaaagtttgaatatcaattaaacgcattt
gi|4 : cgtatcacaaccaacgggaggggaggtgtccttcacaaccttccacttctcaggtcgcccacccgcaataattgaaatgaacgtacccctatagatacatgccaaatgaaatgtttaaagctatttctaacatgcacgacggtccactcaaaacaacatatttctgtccgtccgcccgtccaataggttgcccagccgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgAA--CGTGTATTTGA---TGGT-----GACTTTTCTGCCCGTCTGCTTGCCTGTCTGGCAATATAAA------------CGTCCGTCTATCC----GACCGCCCGC------------CC-ATCTAACCAA--A--------AAT--ATCCA-CCGTCC----GTCCAGCCG--CTAATATACCAATTT---A---T---C---CAT--TT---G---TGCATTAATC--------AATTATATCCGTCTG--------------TCCGTT-CATCCATCTATCCGT---CCATTT-G---GAATATT
gi|4 : TTGTG-----GT--T-TAGAAGAAGC-TGCCACATAATTACTAACTCACCA---T---------TTCGT-GTTACGCCCCAAAAT--CACAA-G---AA-CGCATT-TTTT--------AATCAAAGTCGATAAACACAAATTGCGAA--A--T-AACTCAAGCTTCCTATATGACGTCACAAAT-GAAGGGCGGTAA--CA-A-ATTGCACTTTG-TACCCACAATGTGA-TACA-TGCTAGCTT-AG-GTAT--AT-------------------------------TGTGATAC-T--------------------GAGGTAA----GATGC-TTATGTTTAA--TAA---------TAATGATAT-TAT-AAA---AAAC-A-TTATAACTTTACAC-AATTGTATTGCT-----CGTGACTTTTAAttggataggacattttatgtagaatcattgattggcacataaagcttcttgtggtttagaagaagctgccacataattactaactcaccatttcgtgttacgccccaaaatcacaagaacgcattttttaatcaaagtcgataaacacaaattgcgaaataactcaagcttcctatatgacgtcacaaatgaagggcggtaacaaattgcactttgtacccacaatgtgatacatgctagcttaggtatattgtgatactgaggtaagatgcttatgtttaataataatgatattataaaaaacattataactttacacaattgtattgctcgtgacttttaa
gi|5 : aacgtgtatttgatggtgacttttctgcccgtctgcttgcctgtctggcaatataaacgtccgtctatccgaccgcccgcccatctaaccaaaaatatccaccgtccgtccagccgctaatataccaatttatccatttgtgcattaatcaattatatccgtctgtccgttcatccatctatccgtccatttggaatattttggataggacattttatgtagaatcattgattggcacataaagcttcTA--------A--------ATATAACTT-CC-AAATGGAAGTTCTAATGCTGTTTCTAA--CATTCACCTGA---TGGT-----GTACCTTCTGCCA-------T-----TCTGACAATATATACAT------GCCTGTTATTCAGTCC----GACCACCAGCACGCCTGTGTGACC-GTCCATCTAA--AA-A-----AAC--ATCCATCCATCC----TTCCATTCA--TCCAT---CC-ATTG---C---A---ACGGC----CC---G---TCCATCCACC--------
gi|5 : TATTATG-----GT--T-TAAAAGAGGC-TGTCACGTtgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|5 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagctTTT-TTATTCAATCCAAGTCGATAAGCACGAATTAC-AA--A--TTAGTGCAATCTTCGTTTTTAACGTCACAAAT-CAAGGGAGGTCA--CA--TTTTGACCCTAG-TAGCCGCAATGTGG-TACA-TGCTAATTTTGA-ATATCGATAC--A--CGTATTTC-----GG-AAG-TAAATGTGA-----------------------------AAA----------TTATGTTCGA--TAA---TG---TTATTGA-A---GT-AAAACGAAAA-A-TTAAAACTTTGAAC-A-TTTTATTGCT-----TATGACCTTTgcactttttattcaatccaagtcgataagcacgaattacaaattagtgcaatcttcgtttttaacgtcacaaatcaagggaggtcacattttgaccctagtagccgcaatgtggtacatgctaattttgaatatcgatacacgtatttcggaagtaaatgtgaaaattatgttcgataatgttattgaagtaaaacgaaaaattaaaactttgaacattttattgcttatgaccttttaa
gi|6 : taaatataacttccaaatggaagttctaatgctgtttctaacattcacctgatggtgtaccttctgccattctgacaatatatacatgcctgttattcagtccgaccaccagcacgcctgtgtgaccgtccatctaaaaaaacatccatccatccttccattcatccatccattgcaacggcccgtccatccacctgctgcaatttggaatgtttttgttgcgacactttatgtagtctctgttatctaaagcttattatggtttaaaagaggctgtcacgtgcacCTTGA---TTTT-----GTCATTTCTGCC--------TGCCTACGTGACAATATA-A-AT------GTTTGTCCATCAGTCT----GACCGCCCACCCACCAGTATGACA-ATCCATCCAA--AG-C-----AAC--ATCCGTCTGTTC----ATCAG-CCAAACCCAT---CCAATAGG--C---T------GC----CT---G---GCCATCAATC--------TATC-CATCCATTCA--C----------------C-CATCCATCCATATG----CAATTT-G---GAATGTTATA-----GT--T-TAAAAGAAGC-TGTCACATCCCTACTTACTAAACA---T---------TTCTT-GTTTCACCTCAAAACAACACAACA---AAGCACA---TATTT-TTATTCAATCCGAGGCAATAAAGACAAATAGA-AA--A--T-AGCTCAAGGTTCATGTAGTGTGTCACAAAT-CAAGGGAGGTAA--TA-ATTTT-CAATTTG-TAGCCGCAGTGTAG-TAAT-GCAAACTTT-GA-ATACCAATAA--AGTTGCATTTC-----AG-A-G-TAAATGTGATAT-T--------------------GAGGAAA----GACGtaa
gi|6 : ttgaAAA----GTTGC---AT-TTCAGAGTAAATGTGATATTGAGGA-A-------AGACGAA-C-AGTTACAACTATACAC-AATTCCATTGCT-----TATGAACTTaacagttacaactatacacaattccattgcttatgaactt
gi|7 : ttgacttgattttgtcatttctgcctgcctacgtgacaatataaatgtttgtccatcagtctgaccgcccacccaccagtatgacaatccatccaaagcaacatccgtctgttcatcagccaaacccatccaataggctgcctggccatcaatctatccatccattcacccatccatccatatgcaatttggaatgttatagtttaaaagaagctgtcacatccctacttactaaacatttcttgtttcacctcaaaacaacacaacaaagcacatatttttattcaatccgaggcaataaagacaaatagaaaatagctcaaggttcatgtagtgtgtcacaaatcaagggaggtaataattttcaatttgtagccgcagtgtagtaatgcaaactttgaataccaatCCCTAGGTTGCCCA--CCTCCAACTA-TTGAAACGATCCTACGCCT-----------------------------------ATGATATTTATGATGCTATTTCTAA--CATGAGC--AA---TG-------------TCCGTC--------TGCCCGTCCACCAA
gi|7 : AT------GTCCGTCTGCCCGTCC-----ACCAACCA---ACCAGTAGGACC-GTCAACCCAA--AT-C-----AGC--ATCCGTCTGTCC----TTCCGCCCA--CATAT---CTAATAG---TCTTT---CCGGCAT--CCATAG---TCCATCCATCTTTCAATTCACC-CACCTATCTG--CCT----A----TCCTTA-TATCCATCCATCCAT---CCATTTCG---GAATGTTATA-----GT--T-TAAAAGACGC-TGTCACGTCCCTACTCAACAAACA---T---------TTCAT-GTT-CACCCCAAACCAACACAACG---TAATGCGTT-TTTTT-T-ATTCAA-------------AGACAAATCGA-AAT-A--T-AGAGCAATCTCCGTGTAATGTGTCACAAAT-CAAGGGAGGTAA--CA-ACTTT-CAATTTG-TAGCGGCAAT---------------------A-GTATCGATAAGTAA----ATATC-----GG-A-G-TAAATATGATAT-T--------------------GAAGAAA----GGT-C-GTATGTTCAccaaccagtaggaccgtcaacccaaatcagcatccgtctgtccttccgcccacatatctaatagtctttccggcatccatagtccatccatctttcaattcacccacctatctgcctatccttatatccatccatccatccatttcggaatgttatagtttaaaagacgctgtcacgtccctactcaacaaacatttcatgttcaccccaaaccaacacaacgtaatgcgttttttttattcaaagacaaatcgaaatatagagcaatctccgtgtaatgtgtcacaaatcaagggaggtaacaactttcaatttgtagcggcaatagtatcgataagtaaatatcggagtaaatatgatattgaagaaaggtcgtatgttca
gi|8 : ccctaggttgcccacctccaactattgaaacgatcctacgcctatgatatttatgatgctatttctaacatgagcaTCAATCCAA--AT-TGTTGGAAC--ACCCGTACGTCCTCCAATCCATCCA--TTCAT---C--A-AG---C-----------CAT--CC---A---CCCATCCGTA--------TATC-CATCCATC
gi|8 : tCC----GTACGTCC-------T---CCAAT--------------C--CAT--CC---A---TTCATCAAGC--------CATC-CACCCATCCG--T------A----T-------ATCCATCCATCAGT----AACTT-G---AAATGTTagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|8 : ttcaatccaaattgttggaacacCATCAGT---CAATCT-TTCTAAACCTTCTA-----GTAATATAAACGAAGC-TGTCAAATC---ACATACTA--------------------GT-GTTATATCCCAAAACAACACACTA---AAGCACGTT-TT-----TATTCAATCCAAGTCGACAAATAAAGA-CGCAAA--A--T-AGCGCAAACGTCGTGTATGGCGTCATAAAA-TAAAGGAGGCAA--TATGTTTT--ATGTAG-TTGTTGCAATGTAA------TGCTATCTT-----TA---ATAA--AA-CGC--------------------ATATGATAT-T--------------------ATGGAAT----GATGCGTTATGTTCAA--TTA---TGACATTAGTGA-AA-TAT-AAAAC--AAC-ACTTACAACTTAACAC-AATGTTATTACT-----AATGACCttgtcacgaaacattacgcagtctcgtttcagtggcacatcagtcaatctttctaaaccttctagtaatataaacgaagctgtcaaatcacatactagtgttatatcccaaaacaacacactaaagcacgtttttattcaatccaagtcgacaaataaagacgcaaaatagcgcaaacgtcgtgtatggcgtcataaaataaaggaggcaatatgttttatgtagttgttgcaatgtaatgctatctttaataaaacgcatatgatattatggaatgatgcgttatgttcaattatgacattagtgaaatataaaacaacacttacaacttaacacaatgttattactaatgaccc
gi|9 : ttcaatccaaattgttggaacacccgtacgtcctccaatccatccattcatcaagccatccacccatccgtatatccatccatcagtaacttgaaatgttttgtcacgaaacattacgcagtctcgtttcagtggcaCAACCAGTCAACCCAA--AAAC-----AAC--ATATGTCTGTCC----GTCCGTCCA--CATAT---CTAATAT---A---TTTCCCGGAA--------G---TCCATCCATT--------CATC-CATACATCAA--T-----------TCCATTGCATCCATCCATTCAT---TAA--------GGATGTTATA-----GT--T-TAAAAGAAGC-GGTCACATCCCTACTCAACAAACA---T---------TTCAT-ATTTCACCCCAAACCAACACAGCG---TAGCACA----TTTT-TTATTC-------------AAAGACAAATCG--AA--ATCT-AGCGCATGGTTCGTGTAATGCGTCACAAAT-GAAGGGAGTTAA--CA-A-TTTGCATTTTG-TAGCGGCAATATAA-T---------------A-ATA-----------------TTC-----GG-A-G-TAAATGTGATAT-T--------------------GAAGGTA----TATGC-TTATGTTCAA--AAA---TGATATTAATTA-AT-CAT-AAAATGAAA--A-TTAAAACTATACAT--ATTTCATTGTT-----TATGGCCTTTAAc