lowQualScore : 1 222 2222 111111 22222 22222 11 1 1111 11 222 333333 1 22 11 2222 11 11 1 111111 1 111 22 333 2222 1111 2222222222 1 22222222222222 1111 11111 11 11111 111111
lowQualScore : 6 5 222 22 0 5 0000 77 555555 00000 1 00000 33 1 2 1 5 6 55 6666 11 555 3 2 2 888888 5 44 55 3333 4 88 11 0 0 2 0 888888 5 11 0 111 4 6 77 555 1111 4444 6 6 4444444444 0 99999999999999 6 66 0 2222 1 4 44444 4 3 33 88888 0 0 666666 1 5 1 8 3 0 3
lowQualScore : . . ... .. . . .... .. ...... ..... . ..... .. . . . . . .. .... .. ... . . . ...... . .. .. .... . .. .. . . . . ...... . .. . ... . . .. ... .... .... . . .......... . .............. . .. . .... . . ..... . . .. ..... . . ...... . . . . . . .
lowQualScore : 0 0 444 66 4 4 0000 99 777777 00000 0 77777 11 7 2 0 0 0 00 8888 00 000 7 5 5 555555 5 00 22 5555 0 33 33 8 8 5 0 222222 5 00 2 555 7 7 55 000 2222 3333 7 7 3333333333 8 00000000000000 7 22 7 2222 7 3 33333 3 9 99 00000 4 1 444444 7 7 1 1 9 3 0
consensus : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTCAGGGTTCGACACTAA-ATCTTTGTCCTGGGAATCCCACAGAA--ACCCATAC-TTTT-----AAATCCGGGTG-CCCTCCTGATAATCGGGGATCCCATTTGGGTTATAAATAAAACAA---AGCATATTTT--CAATGAGTCAGTTGGTCACTNCACCCTNTTACATAAATTATGTAGCTNAACTTTCCGAACTTGACACACAANGTG--AGTAATGATCTATACAGAACA-ATANACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATNACTTGACAGTGATTTTGGCTTAATTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTN-AA-CAACA-C-TT--A----ACC-AAAA--AAC---------AAG-GATCCCAACGGAATCCCNATCTTCCAGAA-----GTTGGGATTCCTCCTAAAAAT---CTGGGTCCTTCN--G-AAT-CCCAGGACACTGTTAGTGTCGAACCC
Reference ( gi|2 ) : AGAAATGGACTGTTTAATGTTTGTTTTTGAATATACAATGTAAGGGTTTGACACTAA-ATCTTTATCTTGGGAATCCCATAGAA--ACCCATAC-TTTT-----AAATCTGAATA-CTTTTCTGATAATCAGGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTT-ACTTTCCGAACTTGACACACAAAGTG--AGTAATGATTTATACAGAACA-ATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTA-AA-CAACA-C-TT--A----ACCCAAAAT-AAC---------AAG-GATCCTGACGGAATTCTCATTTTCCAGAA-----ATTGGGATTTCTCCCGAAAAT---TTGGGTCCTTCT--G-AAT-CTCAGAATACTGTTAGTGTCAAATCC
gi|1 : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTCAGAGTTCGACACTAA-ATCTTTATCTTGAGAACCCCATAGAA--ACCCATAC-TTTT-----AAATCTGAATA-CCTTTCAGATAATCGAGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAATTATGTAGCTA-ACTTTTCGAACTTGACACACAAA
gi|1 : AGGATTTGACACTAA---CAGTATTCTGAGATTC----AGAAGGACCCAAAT-TTTTGGGAGGAATCCAAA-----TTTCTGGAAAATGGGAATTCCAtcagctgttaatctttgttaaaataacagccagatgttatctggtttccaactccacgatgtgagtaatgatttatacagaacaataaaccagaaacttctcaaacagaaggcatatataaattacttgacagtgattttggctttttttctttaaataagacagaattgtttgtatctaaacaacacttatggtaaccaaaaaccaaggatcctgatggaattcccattttccagaaatttggattcctcccaaaaatttgggtccttctgaatctcagaatactgttagtgtcaaatcct
gi|3 : agaagtggactgtttaatgtttgtttttgaatatacaatgtcagagttcgacactaaatctttatcttgagaaccccatagaaacccatacttttaaatctgaatacctttcagataatcgaggatcccacttgaggtataaaaaaatgaggcatattttcaatgagtcagttggtcactgcaccctgttacataaattatgtagctaacttttcgaacttgacacacaaatcagctgttaatctttgttaaaataacagccagatgttatctggtttccaactccacgatgtgagtaatgatttatacagaacaataaaccagaaacttctcaaacagaaggcatatataaattacttgacagtgattttggctttttttctttaaataagacagaattgtttgtatctaaacaacacttatggtaaccaaaaaccaaggatcctgaAGGGTTCAACACTAA-ATTTTCATCTTGAGA-TCCCACAGAA--ACC--------TC-----AAATCTGGGTG-CCCTCCTGATAATCAGGCATCCCACTTGAGGTATAAA-AAAAAAAAAGAGCATATTTT--CAA--------TTGATTACTTCACCCTTTTACA-A----ATGT-GCTTAACTTTTCAAACTTGACAC
gi|8 : AGGGTTTAACACTAA---CGTTGTCCCGGGAATCT--TAGGA--ACAC---C-TGAG-----GAATCCCAA-----CTTCTGAAGATT-GGGATTCCATTTGcagcaccagcagttaatctttgtcaaaacacagtcatttgaaatctgtttttttttcaacttcatagtgcaggtaatgacaaacacataaggaacttctcaaacagaaagcaaatataaataacttgacagagattttagct
gi|12 : gacagaataacatgtattataataacactttaaacaagaacaaggataAGAGTTCGACACTAA-CTTTTTTGCTTGTGAATCTC-------------TACATTTT-----AAATCTGGGTAGCCTCCCTGATAAT------------TTAGGTTATAAATAAAACAA---AACTTATTTTAACAAT--GTCAATTg
gi|10 : GGGCTCAACACTAA---CTGTGTCCTGGGATTCCCA-AAAA--ACCCAGAT-TTTT-----AGAatt
gi|9 : aaacaacaacaagccaaaatcacggttatggtatggatcccaacagaatctccattctcacaagtttctTTGACTCAAACATTTTTG-CTTTGGAATCCAACAGGA--ATCCCTAC-TTTTT----AAATTTTGGTG-CCCTCCTGATAATCGGGGATCCCATTTTGGTTATGAATAAAACAA---AGCACATTTT--TACGAAGTC
gi|15 : TG-CCTTCCTAGTAATAATGGATACCATTTTGGTTATAAA-AAAATAA---AG-ATATTTT--TA
gi|1 : TTTCC-AACTC----CACGATGTG--AGTAATGATTTATACAGAACA-ATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTA-AA-CAACA-C-TT--ATGGTAACCAAAA--ACC---------AAG-GATCCTGATGGAATTCCCATTTTCCAGAA-----ATTTGGATTCCTCCCAAAAAT---TTGGGTCCTTCT--G-AAT-CTCAGAATACTGTTAGTGTCAAATCCtgtag
gi|3 : agaagtggactgtttaatgtttgtttttgaatatacaatgtcagagttcgacactaaatctttatcttgagaaccccatagaaacccatacttttaaatctgaatacctttcagataatcgaggatcccacttgaggtataaaaaaatgaggcatattttcaatgagtcagttggtcactgcaccctgttacataaattatgtagctaacttttcgaacttgacacacaaatcagctgttaatctttgttaaaataacagccagatgttatctggTTTC--AACTT------CATAGTGCAGGTAATGA------CA-AACACATAA-----GGAACTTCTCAAACAGAAAGCAAA-TATAAATAACTTGACAGAGATTTTAGCTt
gi|14 : agggttcaacactaaattttcatcttgagatcccacagaaacctcaaatctgggtgccctcctgataatcaggcatcccacttgaggtataaaaaaaaaaaagagcatattttcaattgattacttcacccttttacaaatgtgcttaacttttcaaacttgacaccagcaccagcagttaatctttgtcaaaacacagtcatttgaaatctgttttttCACAATGTA--AGTAATGCTCTGTGTAGACCA-ACACACAA-GAA-CTTTCCAAACAGAAGGCAAA-TATAAGT
gi|4 : cTATACAGAAAA-ATGCACGATGAA--TTGGTAATTGGAATCCAAAATAAAAATCAGTTTTCAGTGATTTTG--TTAATTCTTTTTTATTTAATAAAACAGATCAGCATATATTTT-AA-TAACA-CATT--G----ACC-AAAA--AAC---------AAG-GATCCCAACAGAATCCCAATCTTCCAGAA-----ATTGGGATTCCTCCTGAAAATC--TTGGATCC-TCG--G-AAT-CACTGGACATGATTAGTGTCAAa
gi|6 : cacAAGACAGGATAACATGTATTCT-AA-TAACA-C-TTT-A----ACCAAAAAA-AAC---------AAG-GATCCTAACAGAATCCCCATCTTCCAGAA-----GTTGAGATTCCCCCTGAATA----CTGGGTTCCTTA--G-AATACTGAG-ACACT----GTGCCAAACCC
gi|8 : GACAGAATAACATGTAT-TATAA-TAACA-C-TTTAA----AC----AAG-AAC---------AAG-GATACAAATGGAATCCCAATCTTC-AGAA-----GTTGGGATTCCTC-------------AGGTGTTCCTAAG-ATT-CCCGGGACAACGTTAGTGTTAAACCCtg
gi|5 : GTATTTT-GATCAA-A-C-TT--A----ACCATAAATCAAC---------CAGTGGTCCCATCAGAAT-CAAAACTTCCATTA-----ATTCCGATTCCGCC--AAAATATCTTGGATCCTCGT--T-A-T-CCCAGAACACTGTTAGCAACAAACCCtg
gi|10 : agtaaA-AA-CAACAAC-----A----AGCCAAAAT-CACGGTTATGGTATG-GATCCCAACAGAATCTCCATTCTC-ACAA-----GTT------TCTTCTAAAAAT---CTGGGTTTTTTG--GGAAT-CCCAGGACACAGTTAGTGTTGAGCCCtggcaatcaaacacattttaaagggttacctgatgactatagactggttac
gi|13 : ATCTTCCAGAACCCGAGTTGGAATACCTCCTAAAAAT---CTGGGTTCTTTA--C-AAT-CTGAGTACACTGTTAGTGTTGAA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): GTAGTATGCTATGCGGAAAAATGCATGATGAATTTGTAATCGGAATACAAAATAAAAATCAGTTTTAAGCAGTTTTGTTTGTTCTTCTTTCTTTAATAAAACAAATCAGCATGTATTTTAATAACACTTTGACAAA
Unaligned ( gi|11 ): TAATAAAACAACTTAACATGAATATTAATAATACCTTCAACAAAAATTCAAGAATCCCAACAAAATCATCTTTCAAAAGAATCTCTGGACATCATTTGTGGCAATCATAGAAATGAT
Unaligned ( gi|16 ): TGACTAACTGTTTCGATTTGGTATCCCACAGGAATCCATATTTTTTATAAATTGGTGCCTTC
Unaligned ( gi|17 ): CAATACTCATAATGGGTATAACTACACTTCCAGTTACA
Alignments
lowQualScore : 11 11111 1 1 111 111 22 1111 1 1 22 222 11111111 22 11111
lowQualScore : 2 8 00 6 55 6 11111 1 5 1 33 1 3 9 2 99 99 444 0 1 1 7 000 7 11 8 1111 1 1 88 66 0 66 0 1 3 6 7 1 1 0 1 3 1 1 0 88 111 1 5 5 88888888 6 6 55 5 0 1 2 22222 2 1 55 5 0 1 5 2
lowQualScore : . . .. . .. . ..... . . . .. . . . . .. .. ... . . . . ... . .. . .... . . .. .. . .. . . . . . . . . . . . . . .. ... . . . ........ . . .. . . . . ..... . . .. . . . . .
lowQualScore : 5 0 22 0 55 7 88888 7 7 4 22 0 0 8 2 22 22 444 2 0 0 3 333 3 33 2 2222 0 4 33 33 3 66 7 0 7 7 3 0 0 7 0 3 0 4 0 88 555 0 7 7 99999999 7 7 00 7 4 0 5 55555 5 0 22 0 9 0 0 0
consensus : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTTATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA--AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTT-GTTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-T-----T--AA-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
Reference ( family-1194 ) : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTCAGGGTTCGACACTAA-ATCTTTGTCCTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCCGGGT-GCCCTCCTGATAATCGGGGATCCCATTTGGGTTATAAATAAAACAA--AGCATATTTT--CAATGAGTCAGTTGGTCACTNCACCCTNTTACATAAATTATGTAGCTNAACTTTCCGAACTTGACACACAANGTGAGTAA-TGATCTATA-CAGAACAATANACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATNACTTGACAGTGATTTTGGCTTAATTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTNAA-CAACAC-T-----T--AA-CCA-AAA--AACAAG-GATCCCAACGGAATCCCNATCTTCCAGAA-----GTTGGGATTCCTCCTAAAAATC-T-GGGTCCTTCNG-AATCCCAGGACACTGTTAGTGTCGAACCC
gi|1 : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTCAGAGTTCGACACTAA-ATCTTTATCTTGAGAACCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACCTTTCAGATAATCGAGGATCCCACTTGAGGTATAAA-AAAATGA--GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAATTATGTAGCT-AACTTTTCGAACTTGACACACAA
gi|1 : TTTCC-AACTC----CACGATGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-TTATGGT--AA-CCA-AAA--ACCAAG-GATCCTGATGGAATTCCCATTTTCCAGAA-----ATTTGGATTCCTCCCAAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCCatcagctgttaatctttgttaaaataacagccagatgttatctggtttccaactccacgatgtgagtaatgatttatacagaacaataaaccagaaacttctcaaacagaaggcatatataaattacttgacagtgattttggctttttttctttaaataagacagaattgtttgtatctaaacaacacttatggtaaccaaaaaccaaggatcctgatggaattcccattttccagaaatttggattcctcccaaaaatttgggtccttctgaatctcagaatactgttagtgtcaaatcct
gi|10 : agaagtggactgtttaatgtttgtttttgaatatacaatgtcagagttcgacactaaatctttatcttgagaaccccatagaaacccatacttttaaatctgaatacctttcagataatcgaggatcccacttgaggtataaaaaaatgaggcatattttcaatgagtcagttggtcactgcaccctgttacataaattatgtagctaacttttcgaacttgacacacaaatcagctgttaatctttgttaaaataacagccagatgttatctggG-GATCCCAACAGAATCTCCATTCTC-ACAA-----GTT------TCTTCTAAAAATC-T-GGGTTTTTTGGGAATCCCAGGACACAGTTAGTGTTGAGCCCt
gi|12 : aaacaacaacaagccaaaatcacggttatggtatAGAGTTCGACACTAA-CTTTTTTGCTTGTGAATCTC-----------TACATTT---T-AAATCTGGGTAGCCTCCCTGATA------------ATTTAGGTTATAAATAAAACAA--AACTTATTTTAACAAT--GTCAATT
gi|13 : ATCTTCCAGAACCCGAGTTGGAATACCTCCTAAAAATC-T-GGGTTCTTTAC-AATCTGAGTACACTGTTAGTGTTGAACTCatt
gi|14 : CACAATGTAAGTAA-TGCTCTGTG-TAGACCAACACACAA-GAA-CTTTCCAAACAGAAGGCAAA-TATAAGT
gi|15 : cT-GCCTTCCTAGTAATAATGGATACCATTTTGGTTATAAA-AAAATAA--AG-ATATTTT--TAa
gi|16 : GGTATCCCACAGGAATCCATAT-TTTTTAT-AAATT--GGT-GCCTTCtgtag
gi|2 : tgactaactgtttcgatttAGAAATGGACTGTTTAATGTTTGTTTTTGAATATACAATGTAAGGGTTTGACACTAA-ATCTTTATCTTGGGAATCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACTTTTCTGATAATCAGGGATCCCACTTGAGGTATAAA-AAAATGA--GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTT-ACTTTCCGAACTTGACACACAAAGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-T-----T--AACCCA-AAAT-AACAAG-GATCCTGACGGAATTCTCATTTTCCAGAA-----ATTGGGATTTCTCCCGAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCC
gi|3 : AGGGTTCAACACTAA-ATTTTCATCTTGAGA-TCCCACAGAAACC--------T---C-AAATCTGGGT-GCCCTCCTGATAATCAGGCATCCCACTTGAGGTATAAAAAAAAAAAAGAGCATATTTT--CAA--------TTGATTACTTCACCCTTTTACA-A----ATGT-GCTTAACTTTTCAAACTTGACAC-CAGCACCAGCAGTTAATCTTTGTCAAAACA
gi|3 : TTTC--AACTT----CATAGTGCAGGTAA-TGA-------CA----AACACATAA-GGAACTTCTCAAACAGAAAGCAAA-TATAAATAACTTGACAGAGATTTTAGCTcagtcatttgaaatctgtttttttttcaacttcatagtgcaggtaatgacaaacacataaggaacttctcaaacagaaagcaaatataaataacttgacagagattttagct
gi|4 : agggttcaacactaaattttcatcttgagatcccacagaaacctcaaatctgggtgccctcctgataatcaggcatcccacttgaggtataaaaaaaaaaaagagcatattttcaattgattacttcacccttttacaaatgtgcttaacttttcaaacttgacaccagcaccagcagttaatctttgtcaaaacacagtcatttgaaatctgttttttCTATA-CAGAAAAATGCACGATGAA--TTGGTAATTGGAATCCAAAATAAAAATCAGTTTTCAGTGATTTTG--TTAATTCTTTTTTATTTAATAAAACAGATCAGCATATATTTTAA-TAACACAT-----T--GA-CCA-AAA--AACAAG-GATCCCAACAGAATCCCAATCTTCCAGAA-----ATTGGGATTCCTCCTGAAAATCTT-GGATCC-TCGG-AATCACTGGACATGATTAGTGTCA
gi|5 : caAGTAAGTATTTTGATCAA-AC-T-----T--AA-CCATAAATCAACCAGTGGTCCCATCAGAATCAAAA-CTTCCATTA-----ATTCCGATTCCGCCAAAATATC-TTGGATCCT-CGT-TATCCCAGAACACTGTTAGCAACAAACCC
gi|6 : AAGACAGGATAACATGTATTCTAA-TAACAC-T-----TT-AA-CCA-AAAAAAACAAG-GATCCTAACAGAATCCCCATCTTCCAGAA-----GTTGAGATTCCCCCTGAATA-C-T-GGGTTCCTTAG-AATACTGAGACACT----GTGCCAAACCCtggcaatcaaacacattttaaagggttacctgatgactatagactggttac
gi|7 : AGTA--TG--CTATG-CGGAAAAATGCATGA-TGAATTTGT-AATCGGAATACAAAATAAAAATCAGTTTTAAGCAGTTTTG--TTTGTTCTTCTTTCTTTAATAAAACAAATCAGCATGTATTTTAA-TAACAC-T-----T--tg
gi|8 : gtGACAGAATAACATGTATTATAA-TAACAC-T-----TTAAA-C---AAG--AACAAG-GATACAAATGGAATCCCAATCTTC-AGAA-----GTTGGGATTCCTC----AGGT------GTTCCTAAG-ATTCCCGGGACAACGTTAGTGTTAAACCCtgacaaa
gi|9 : TTGACTCAAACATTTTTG-CTTTGGAATCCAACAGGAATCCCTAC-TTT---TTAAATTTTGGT-GCCCTCCTGATAATCGGGGATCCCATTTTGGTTATGAATAAAACAA--AGCACATTTT--TACGAAGTCtg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAACAACTTAACATGAATATTAATAATACCTTCAACAAAAATTCAAGAATCCCAACAAAATCATCTTTCAAAAGAATCTCTGGACATCATTTGTGGCAATCATAGAAATGAT
Unaligned ( gi|17 ): CAATACTCATAATGGGTATAACTACACTTCCAGTTACA
Alignments
lowQualScore : 1111 11111 1 111 111 111 1111 1 1 22 222 22222222 22 11111
lowQualScore : 1 6 0000 55 6 11111 5 555 1 1 3 22 111 99 444 0 7 000 7 7 7 8 1111 4 1 88 66 0 66 0 3 6 4 1 1 0 1 3 1 1 4 0 99 111 5 5 33333333 6 6 55 5 11 0 22222 2 55 55 5 0 2 5 3 2
lowQualScore : . . .... .. . ..... . ... . . . .. ... .. ... . . ... . . . . .... . . .. .. . .. . . . . . . . . . . . . . .. ... . . ........ . . .. . .. . ..... . .. .. . . . . . .
lowQualScore : 0 7 2222 55 7 88888 7 777 0 0 3 88 777 22 444 2 3 000 3 3 3 2 2222 6 4 33 33 3 11 7 7 7 2 0 0 7 0 3 4 4 6 0 00 555 7 7 77777777 7 7 00 7 99 7 55555 5 44 22 0 9 2 0 1 0
consensus : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TT--A-----A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
Reference ( family-1194 ) : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TT--A-----A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
gi|1 : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTCAGAGTTCGACACTAA-ATCTTT--ATCTTGAGAACCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACCTTTCAGATAATCGAGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAATTATGTAGC-TAACTTTTCGAACTTGACACACAA
gi|1 : TTTCC-AACTC----CACGATGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-TT--ATGGTAA-CCA-AAA--ACCAAG-GATCCTGATGGAATTCCCATTTTCCAGAA-----ATTTGGATTCCTCCCAAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCCatcagctgttaatctttgttaaaataacagccagatgttatctggtttccaactccacgatgtgagtaatgatttatacagaacaataaaccagaaacttctcaaacagaaggcatatataaattacttgacagtgattttggctttttttctttaaataagacagaattgtttgtatctaaacaacacttatggtaaccaaaaaccaaggatcctgatggaattcccattttccagaaatttggattcctcccaaaaatttgggtccttctgaatctcagaatactgttagtgtcaaatcct
gi|10 : agaagtggactgtttaatgtttgtttttgaatatacaatgtcagagttcgacactaaatctttatcttgagaaccccatagaaacccatacttttaaatctgaatacctttcagataatcgaggatcccacttgaggtataaaaaaatgaggcatattttcaatgagtcagttggtcactgcaccctgttacataaattatgtagctaacttttcgaacttgacacacaaatcagctgttaatctttgttaaaataacagccagatgttatctggG-GATCCCAACAGAATCTCCATTCTC-ACAA-----GTT------TCTTCTAAAAATC-T-GGGTTTTTTGGGAATCCCAGGACACAGTTAGTGTTGAGCCCt
gi|12 : aaacaacaacaagccaaaatcacggttatggtatAGAGTTCGACACTAA-CTTTTT--TGCTTGTGAATCTC-----------TACATTT---T-AAATCTGGGTAGCCTCCCTGATAAT------------TTAGGTTATAAATAAAACAA---AACTTATTTTAACAAT--GTCAATT
gi|13 : ATCTTCCAGAACCCGAGTTGGAATACCTCCTAAAAATC-T-GGGTTCTTTAC-AATCTGAGTACACTGTTAGTGTTGAACTCatt
gi|14 : CACAATGTAAGTAA-TGCTCTGTG-TAGACCAACACACAA-G-AACTTTCCAAACAGAAGGCAAA-TATAAGT
gi|15 : cT-GCCTTCCTAGTAATAATGGATACCATTTTGGTTATAAA-AAAATAA---AG-ATATTTT--TAa
gi|16 : ACTAA-CTGTTTCGATTT--GGTATCCCACAGGAATCCATAT-TTTTTAT-AAATT--GGT-GCCTTCtgtag
gi|2 : tgAGAAATGGACTGTTTAATGTTTGTTTTTGAATATACAATGTAAGGGTTTGACACTAA-ATCTTT--ATCTTGGGAATCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACTTTTCTGATAATCAGGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTT-ACTTTCCGAACTTGACACACAAAGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-TT--A-----ACCCA-AAAT-AACAAG-GATCCTGACGGAATTCTCATTTTCCAGAA-----ATTGGGATTTCTCCCGAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCC
gi|3 : AGGGTTCAACACTAA-ATTTTC--ATCTTGAGA-TCCCACAGAAACC--------T---C-AAATCTGGGT-GCCCTCCTGATAATCAGGCATCCCACTTGAGGTATAAA-AAAAAAAAAGAGCATATTTT--CAA--------TTGATTACTTCACCCTTTTACA-A----ATGT-GCTTAACTTTTCAAACTTGACAC-CAGCACCAGCAGTTAATCTTTGTCAAAACA
gi|3 : TTTC--AACTT----CATAGTGCAGGTAA-TGA-------CA----AACACATAA-GGAACTTCTCAAACAGAAAGCAAA-TATAAATAACTTGACAGAGATTTTAGCTcagtcatttgaaatctgtttttttttcaacttcatagtgcaggtaatgacaaacacataaggaacttctcaaacagaaagcaaatataaataacttgacagagattttagct
gi|4 : agggttcaacactaaattttcatcttgagatcccacagaaacctcaaatctgggtgccctcctgataatcaggcatcccacttgaggtataaaaaaaaaaaagagcatattttcaattgattacttcacccttttacaaatgtgcttaacttttcaaacttgacaccagcaccagcagttaatctttgtcaaaacacagtcatttgaaatctgttttttCTATA-CAGAAAAATGCACGATGAA--TTGGTAATTGGAATCCAAAATAAAAATCAGTTTTCAGTGATTTTG--TTAATTCTTTTTTATTTAATAAAACAGATCAGCATATATTTTAA-TAACACATT--G-----A-CCA-AAA--AACAAG-GATCCCAACAGAATCCCAATCTTCCAGAA-----ATTGGGATTCCTCCTGAAAATCTT-GGATCC-TCGG-AATCACTGGACATGATTAGTGTCA
gi|5 : caAGTAAGTATTTTGATCAA-AC-TT--A-----A-CCATAAATCAACCAGTGGTCCCATCAGAATCAAAA-CTTCCATTA-----ATTCCGATTCCGCCAAAATATC-TTGGATCCT-CGT-TATCCCAGAACACTGTTAGCAACAAACCC
gi|6 : AAGACAGGATAACATGTATTCTAA-TAACAC-TTT-A-----A-CCA-AAAAAAACAAG-GATCCTAACAGAATCCCCATCTTCCAGAA-----GTTGAGATTCCCCCTGAATA-C-T-GGGTTCCTTAG-AATACTGAGACACT----GTGCCAAACCCtggcaatcaaacacattttaaagggttacctgatgactatagactggttac
gi|7 : AGTA--TG--CTATG-CGGAAAAATGCATGA-TGAATTTGT-AATCGGAATACAAAATAAAAATCAGTTTTAAGCAGTTTTG-TTTG-TTCTTCTTTCTTTAATAAAACAAATCAGCATGTATTTTAA-TAACAC-TT--tg
gi|8 : gtGACAGAATAACATGTATTATAA-TAACAC-TTTAA-----A-C---AAG--AACAAG-GATACAAATGGAATCCCAATCTT-CAGAA-----GTTGGGATTCCTC----AGGT------GTTCCTAAG-ATTCCCGGGACAACGTTAGTGTTAAACCCtgacaaa
gi|9 : TTGACTCAAACATTTTT--G-CTTTGGAATCCAACAGGAATCCCTAC-TTT---TTAAATTTTGGT-GCCCTCCTGATAATCGGGGATCCCATTTTGGTTATGAATAAAACAA---AGCACATTTT--TACGAAGTCtg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAACAACTTAACATGAATATTAATAATACCTTCAACAAAAATTCAAGAATCCCAACAAAATCATCTTTCAAAAGAATCTCTGGACATCATTTGTGGCAATCATAGAAATGAT
Unaligned ( gi|17 ): CAATACTCATAATGGGTATAACTACACTTCCAGTTACA
Alignments
lowQualScore : 1111 11111 1 111 111 111 1111 1 1 22 222 22222222 22 11111
lowQualScore : 1 6 0000 55 6 11111 5 555 1 1 3 22 111 99 444 0 7 000 7 7 7 8 1111 4 1 88 66 0 66 0 3 6 4 1 1 0 1 3 1 1 4 0 99 111 5 5 33333333 6 6 55 5 11 0 22222 2 55 55 5 0 2 5 3 2
lowQualScore : . . .... .. . ..... . ... . . . .. ... .. ... . . ... . . . . .... . . .. .. . .. . . . . . . . . . . . . . .. ... . . ........ . . .. . .. . ..... . .. .. . . . . . .
lowQualScore : 0 7 2222 55 7 88888 7 777 0 0 3 88 777 22 444 2 3 000 3 3 3 2 2222 6 4 33 33 3 11 7 7 7 2 0 0 7 0 3 4 4 6 0 00 555 7 7 77777777 7 7 00 7 99 7 55555 5 44 22 0 9 2 0 1 0
consensus : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TT--A-----A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
Reference ( family-1194 ) : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TT--A-----A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
gi|1 : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTCAGAGTTCGACACTAA-ATCTTT--ATCTTGAGAACCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACCTTTCAGATAATCGAGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAATTATGTAGC-TAACTTTTCGAACTTGACACACAA
gi|1 : TTTCC-AACTC----CACGATGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-TT--ATGGTAA-CCA-AAA--ACCAAG-GATCCTGATGGAATTCCCATTTTCCAGAA-----ATTTGGATTCCTCCCAAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCCatcagctgttaatctttgttaaaataacagccagatgttatctggtttccaactccacgatgtgagtaatgatttatacagaacaataaaccagaaacttctcaaacagaaggcatatataaattacttgacagtgattttggctttttttctttaaataagacagaattgtttgtatctaaacaacacttatggtaaccaaaaaccaaggatcctgatggaattcccattttccagaaatttggattcctcccaaaaatttgggtccttctgaatctcagaatactgttagtgtcaaatcct
gi|10 : agaagtggactgtttaatgtttgtttttgaatatacaatgtcagagttcgacactaaatctttatcttgagaaccccatagaaacccatacttttaaatctgaatacctttcagataatcgaggatcccacttgaggtataaaaaaatgaggcatattttcaatgagtcagttggtcactgcaccctgttacataaattatgtagctaacttttcgaacttgacacacaaatcagctgttaatctttgttaaaataacagccagatgttatctggG-GATCCCAACAGAATCTCCATTCTC-ACAA-----GTT------TCTTCTAAAAATC-T-GGGTTTTTTGGGAATCCCAGGACACAGTTAGTGTTGAGCCCt
gi|12 : aaacaacaacaagccaaaatcacggttatggtatAGAGTTCGACACTAA-CTTTTT--TGCTTGTGAATCTC-----------TACATTT---T-AAATCTGGGTAGCCTCCCTGATAAT------------TTAGGTTATAAATAAAACAA---AACTTATTTTAACAAT--GTCAATT
gi|13 : ATCTTCCAGAACCCGAGTTGGAATACCTCCTAAAAATC-T-GGGTTCTTTAC-AATCTGAGTACACTGTTAGTGTTGAACTCatt
gi|14 : CACAATGTAAGTAA-TGCTCTGTG-TAGACCAACACACAA-G-AACTTTCCAAACAGAAGGCAAA-TATAAGT
gi|15 : cT-GCCTTCCTAGTAATAATGGATACCATTTTGGTTATAAA-AAAATAA---AG-ATATTTT--TAa
gi|16 : ACTAA-CTGTTTCGATTT--GGTATCCCACAGGAATCCATAT-TTTTTAT-AAATT--GGT-GCCTTCtgtag
gi|2 : tgAGAAATGGACTGTTTAATGTTTGTTTTTGAATATACAATGTAAGGGTTTGACACTAA-ATCTTT--ATCTTGGGAATCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACTTTTCTGATAATCAGGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTT-ACTTTCCGAACTTGACACACAAAGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-TT--A-----ACCCA-AAAT-AACAAG-GATCCTGACGGAATTCTCATTTTCCAGAA-----ATTGGGATTTCTCCCGAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCC
gi|3 : AGGGTTCAACACTAA-ATTTTC--ATCTTGAGA-TCCCACAGAAACC--------T---C-AAATCTGGGT-GCCCTCCTGATAATCAGGCATCCCACTTGAGGTATAAA-AAAAAAAAAGAGCATATTTT--CAA--------TTGATTACTTCACCCTTTTACA-A----ATGT-GCTTAACTTTTCAAACTTGACAC-CAGCACCAGCAGTTAATCTTTGTCAAAACA
gi|3 : TTTC--AACTT----CATAGTGCAGGTAA-TGA-------CA----AACACATAA-GGAACTTCTCAAACAGAAAGCAAA-TATAAATAACTTGACAGAGATTTTAGCTcagtcatttgaaatctgtttttttttcaacttcatagtgcaggtaatgacaaacacataaggaacttctcaaacagaaagcaaatataaataacttgacagagattttagct
gi|4 : agggttcaacactaaattttcatcttgagatcccacagaaacctcaaatctgggtgccctcctgataatcaggcatcccacttgaggtataaaaaaaaaaaagagcatattttcaattgattacttcacccttttacaaatgtgcttaacttttcaaacttgacaccagcaccagcagttaatctttgtcaaaacacagtcatttgaaatctgttttttCTATA-CAGAAAAATGCACGATGAA--TTGGTAATTGGAATCCAAAATAAAAATCAGTTTTCAGTGATTTTG--TTAATTCTTTTTTATTTAATAAAACAGATCAGCATATATTTTAA-TAACACATT--G-----A-CCA-AAA--AACAAG-GATCCCAACAGAATCCCAATCTTCCAGAA-----ATTGGGATTCCTCCTGAAAATCTT-GGATCC-TCGG-AATCACTGGACATGATTAGTGTCA
gi|5 : caAGTAAGTATTTTGATCAA-AC-TT--A-----A-CCATAAATCAACCAGTGGTCCCATCAGAATCAAAA-CTTCCATTA-----ATTCCGATTCCGCCAAAATATC-TTGGATCCT-CGT-TATCCCAGAACACTGTTAGCAACAAACCC
gi|6 : AAGACAGGATAACATGTATTCTAA-TAACAC-TTT-A-----A-CCA-AAAAAAACAAG-GATCCTAACAGAATCCCCATCTTCCAGAA-----GTTGAGATTCCCCCTGAATA-C-T-GGGTTCCTTAG-AATACTGAGACACT----GTGCCAAACCCtggcaatcaaacacattttaaagggttacctgatgactatagactggttac
gi|7 : AGTA--TG--CTATG-CGGAAAAATGCATGA-TGAATTTGT-AATCGGAATACAAAATAAAAATCAGTTTTAAGCAGTTTTG-TTTG-TTCTTCTTTCTTTAATAAAACAAATCAGCATGTATTTTAA-TAACAC-TT--tg
gi|8 : gtGACAGAATAACATGTATTATAA-TAACAC-TTTAA-----A-C---AAG--AACAAG-GATACAAATGGAATCCCAATCTT-CAGAA-----GTTGGGATTCCTC----AGGT------GTTCCTAAG-ATTCCCGGGACAACGTTAGTGTTAAACCCtgacaaa
gi|9 : TTGACTCAAACATTTTT--G-CTTTGGAATCCAACAGGAATCCCTAC-TTT---TTAAATTTTGGT-GCCCTCCTGATAATCGGGGATCCCATTTTGGTTATGAATAAAACAA---AGCACATTTT--TACGAAGTCtg
blockSeqs : A C CGAT CA A TTAT A AAT A T T CA AAG AA TGA T AAC A T A G GACA T A GT CT GT A T A T C G A T A T G AA TTT T A TAA C T TC T CA CCCGA G TA CT T G G A G
blockSeqs : . TG CA . TT . CAG T T T TA . . GAA . . . T . A GACA A G A AT G C . G C C G A A A A G G TTT . . TA . . AA . TG . G TA C . A . A G
blockSeqs : . AT CC . T . CAG G G . TG . . T . . C C A AT A A . A C C A . C T T . . . . . A . . T . CA . G CG C . T . A A
blockSeqs : . AT . . T . CGG G G . AA . . . . . T A A A A G . G G T T . C T C . . . G . . . . CA . C TG T . G . T A
blockSeqs : . G . . C . . T T . CA . . . . G G . . G . T . . . A . . . . TA . G AA C . G . A A
blockSeqs : . . . . . AA . G TG C . A . G A
blockSeqs : . . . . . A . G A
blockSeqCons : A*******
originalCons : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TT--A-----A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
finalCons : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TTA-------A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAACAACTTAACATGAATATTAATAATACCTTCAACAAAAATTCAAGAATCCCAACAAAATCATCTTTCAAAAGAATCTCTGGACATCATTTGTGGCAATCATAGAAATGAT
Unaligned ( gi|17 ): CAATACTCATAATGGGTATAACTACACTTCCAGTTACA
Alignments
lowQualScore : 1111 11111 1 111 111 111 1111 1 1 22 222 22222222 22 11111
lowQualScore : 1 6 0000 55 6 11111 5 555 1 1 3 22 111 99 444 0 7 000 7 7 7 8 1111 4 1 88 66 0 66 0 3 6 4 1 1 0 1 3 1 1 4 0 99 111 5 5 33333333 6 6 55 5 11 0 22222 2 55 55 5 0 2 5 3 2
lowQualScore : . . .... .. . ..... . ... . . . .. ... .. ... . . ... . . . . .... . . .. .. . .. . . . . . . . . . . . . . .. ... . . ........ . . .. . .. . ..... . .. .. . . . . . .
lowQualScore : 0 7 2222 55 7 88888 7 777 0 0 3 88 777 22 444 2 3 000 3 3 3 2 2222 6 4 33 33 3 11 7 7 7 2 0 0 7 0 3 4 4 6 0 00 555 7 7 77777777 7 7 00 7 99 7 55555 5 44 22 0 9 2 0 1 0
consensus : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TT--A-----A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
Reference ( family-1194 ) : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTNAGGGTTCGACACTAA-ATTTTT--ATCTTGGGAATCCCACAGAAACCCATAC-TTT---T-AAATCTGGGT-GCCTTCCTGATAATCGGGGATCCCACTTGGGNTATAAA-AAAACGA---AGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTTAACTTTCCGAACTTGACACACAACGCGAGTAA-TGATCTATG-CAGAACAATACACGA-GAAACTTCTCAAACGGAAGGCAAA-TATAAATCACTTGACAGCGATTTTGGCTTG-TTCTTCTTTATTTAATAAGACAGAATAGCATGTATTTTAA-CAACAC-TT--A-----A-CCA-AAA--AACAAG-GATCCCGACGGAATCCCCATCTTCCAGAA-----GTTGGGATTCCTCCCGAAAATC-T-GGGTCCTTCGG-AATCCCGGGACACTGTTAGTGTCGAACCC
gi|1 : AGAAGTGGACTGTTTAATGTTTGTTTTTGAATATACAATGTCAGAGTTCGACACTAA-ATCTTT--ATCTTGAGAACCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACCTTTCAGATAATCGAGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAATTATGTAGC-TAACTTTTCGAACTTGACACACAA
gi|1 : TTTCC-AACTC----CACGATGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-TT--ATGGTAA-CCA-AAA--ACCAAG-GATCCTGATGGAATTCCCATTTTCCAGAA-----ATTTGGATTCCTCCCAAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCCatcagctgttaatctttgttaaaataacagccagatgttatctggtttccaactccacgatgtgagtaatgatttatacagaacaataaaccagaaacttctcaaacagaaggcatatataaattacttgacagtgattttggctttttttctttaaataagacagaattgtttgtatctaaacaacacttatggtaaccaaaaaccaaggatcctgatggaattcccattttccagaaatttggattcctcccaaaaatttgggtccttctgaatctcagaatactgttagtgtcaaatcct
gi|10 : agaagtggactgtttaatgtttgtttttgaatatacaatgtcagagttcgacactaaatctttatcttgagaaccccatagaaacccatacttttaaatctgaatacctttcagataatcgaggatcccacttgaggtataaaaaaatgaggcatattttcaatgagtcagttggtcactgcaccctgttacataaattatgtagctaacttttcgaacttgacacacaaatcagctgttaatctttgttaaaataacagccagatgttatctggG-GATCCCAACAGAATCTCCATTCTC-ACAA-----GTT------TCTTCTAAAAATC-T-GGGTTTTTTGGGAATCCCAGGACACAGTTAGTGTTGAGCCCt
gi|12 : aaacaacaacaagccaaaatcacggttatggtatAGAGTTCGACACTAA-CTTTTT--TGCTTGTGAATCTC-----------TACATTT---T-AAATCTGGGTAGCCTCCCTGATAAT------------TTAGGTTATAAATAAAACAA---AACTTATTTTAACAAT--GTCAATT
gi|13 : ATCTTCCAGAACCCGAGTTGGAATACCTCCTAAAAATC-T-GGGTTCTTTAC-AATCTGAGTACACTGTTAGTGTTGAACTCatt
gi|14 : CACAATGTAAGTAA-TGCTCTGTG-TAGACCAACACACAA-G-AACTTTCCAAACAGAAGGCAAA-TATAAGT
gi|15 : cT-GCCTTCCTAGTAATAATGGATACCATTTTGGTTATAAA-AAAATAA---AG-ATATTTT--TAa
gi|16 : ACTAA-CTGTTTCGATTT--GGTATCCCACAGGAATCCATAT-TTTTTAT-AAATT--GGT-GCCTTCtgtag
gi|2 : tgAGAAATGGACTGTTTAATGTTTGTTTTTGAATATACAATGTAAGGGTTTGACACTAA-ATCTTT--ATCTTGGGAATCCCATAGAAACCCATAC-TTT---T-AAATCTGAAT-ACTTTTCTGATAATCAGGGATCCCACTTGAGGTATAAA-AAAATGA---GGCATATTTT--CAATGAGTCAGTTGGTCACTGCACCCTGTTACATAAACTATGTAGCTT-ACTTTCCGAACTTGACACACAAAGTGAGTAA-TGATTTATA-CAGAACAATAAACCA-GAAACTTCTCAAACAGAAGGCATA-TATAAATTACTTGACAGTGATTTTGGCTT--TTTTTCTTTA---AATAAGACAGAATTGTTTGTATCTAAA-CAACAC-TT--A-----ACCCA-AAAT-AACAAG-GATCCTGACGGAATTCTCATTTTCCAGAA-----ATTGGGATTTCTCCCGAAAATT-T-GGGTCCTTCTG-AATCTCAGAATACTGTTAGTGTCAAATCC
gi|3 : AGGGTTCAACACTAA-ATTTTC--ATCTTGAGA-TCCCACAGAAACC--------T---C-AAATCTGGGT-GCCCTCCTGATAATCAGGCATCCCACTTGAGGTATAAA-AAAAAAAAAGAGCATATTTT--CAA--------TTGATTACTTCACCCTTTTACA-A----ATGT-GCTTAACTTTTCAAACTTGACAC-CAGCACCAGCAGTTAATCTTTGTCAAAACA
gi|3 : TTTC--AACTT----CATAGTGCAGGTAA-TGA-------CA----AACACATAA-GGAACTTCTCAAACAGAAAGCAAA-TATAAATAACTTGACAGAGATTTTAGCTcagtcatttgaaatctgtttttttttcaacttcatagtgcaggtaatgacaaacacataaggaacttctcaaacagaaagcaaatataaataacttgacagagattttagct
gi|4 : agggttcaacactaaattttcatcttgagatcccacagaaacctcaaatctgggtgccctcctgataatcaggcatcccacttgaggtataaaaaaaaaaaagagcatattttcaattgattacttcacccttttacaaatgtgcttaacttttcaaacttgacaccagcaccagcagttaatctttgtcaaaacacagtcatttgaaatctgttttttCTATA-CAGAAAAATGCACGATGAA--TTGGTAATTGGAATCCAAAATAAAAATCAGTTTTCAGTGATTTTG--TTAATTCTTTTTTATTTAATAAAACAGATCAGCATATATTTTAA-TAACACATT--G-----A-CCA-AAA--AACAAG-GATCCCAACAGAATCCCAATCTTCCAGAA-----ATTGGGATTCCTCCTGAAAATCTT-GGATCC-TCGG-AATCACTGGACATGATTAGTGTCA
gi|5 : caAGTAAGTATTTTGATCAA-AC-TT--A-----A-CCATAAATCAACCAGTGGTCCCATCAGAATCAAAA-CTTCCATTA-----ATTCCGATTCCGCCAAAATATC-TTGGATCCT-CGT-TATCCCAGAACACTGTTAGCAACAAACCC
gi|6 : AAGACAGGATAACATGTATTCTAA-TAACAC-TTT-A-----A-CCA-AAAAAAACAAG-GATCCTAACAGAATCCCCATCTTCCAGAA-----GTTGAGATTCCCCCTGAATA-C-T-GGGTTCCTTAG-AATACTGAGACACT----GTGCCAAACCCtggcaatcaaacacattttaaagggttacctgatgactatagactggttac
gi|7 : AGTA--TG--CTATG-CGGAAAAATGCATGA-TGAATTTGT-AATCGGAATACAAAATAAAAATCAGTTTTAAGCAGTTTTG-TTTG-TTCTTCTTTCTTTAATAAAACAAATCAGCATGTATTTTAA-TAACAC-TT--tg
gi|8 : gtGACAGAATAACATGTATTATAA-TAACAC-TTTAA-----A-C---AAG--AACAAG-GATACAAATGGAATCCCAATCTT-CAGAA-----GTTGGGATTCCTC----AGGT------GTTCCTAAG-ATTCCCGGGACAACGTTAGTGTTAAACCCtgacaaa
gi|9 : TTGACTCAAACATTTTT--G-CTTTGGAATCCAACAGGAATCCCTAC-TTT---TTAAATTTTGGT-GCCCTCCTGATAATCGGGGATCCCATTTTGGTTATGAATAAAACAA---AGCACATTTT--TACGAAGTCtg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TAATAAAACAACTTAACATGAATATTAATAATACCTTCAACAAAAATTCAAGAATCCCAACAAAATCATCTTTCAAAAGAATCTCTGGACATCATTTGTGGCAATCATAGAAATGAT
Unaligned ( gi|17 ): CAATACTCATAATGGGTATAACTACACTTCCAGTTACA