lowQualScore : 11111 111 11 22222 7777777777777777 222222 222222222 1 55555555555555555555555 22222 11 1 111 1 9999999999999999999 11 44444 1111111111 444444 3333333333 2222 11 1 111 11 3333
lowQualScore : 6 1 66666 0 444 5 4 5 5 66 33333 777 0000000000000000 4 1 99 99 555555 999999999 0 55555555555555555555555 8 0 55555 0 55 77 3 5 1 0 8 0 6 1 111 3 9999999999999999999 1 11 7 99 00000 6666666666 99 3 000000 0 55 9999999999 3333 22 4 2 4 7 0 777 3 0 2 333 33 1 8888
lowQualScore : . . ..... . ... . . . . .. ..... ... ................ . . .. .. ...... ......... . ....................... . . ..... . .. .. . . . . . . . . ... . ................... . .. . .. ..... .......... .. . ...... . .. .......... .... .. . . . . . ... . . . ... .. . ....
lowQualScore : 0 0 11111 7 000 7 3 7 7 00 66666 333 9999999999999999 3 0 22 00 000000 888888888 0 44444444444444444444444 2 8 00000 2 00 44 0 0 4 8 0 8 6 8 777 3 8888888888888888888 0 88 0 22 00000 2222222222 22 5 555555 2 22 2222222222 2222 88 0 2 0 0 2 555 2 8 2 555 88 0 0000
consensus : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGT-A-TTTTAAACTCCATTGCG-T-CC-GGG--ACCCGTTTC-C-G-AA----AAA-A-AAGCGATTTCGTT--CATTGCTTTCN-T-TTTCCC-A-T---C-CAAAG-TAACAAA------------A--A-----AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CAACAATTCCATCTAAATCGCGATG---TT-TTGTTA-TTCTA---GTTGTAATTTTCCACCGAAACGTTT-NCCCTA--CG--CATGGACCGGATGTA---GCGG--ATCATACGCACTACCAN-TTGTTTACCTTNACACCGTTATTGG-TCACGT-GACAAGAGTNGGGAGAATCCGAGNGTCATTGAAATTTATGAAATAA---AATGTGTTTTGATGCAATTATGCT--CGCCTTTTTCATATT
Reference ( gi|3 ) : CTGTGTCTCTGACACACT----TTTTCGACTGAGGACTCAC-A-TTTTAAATTCCATTGCG-T-CC-AGG--ATATGTTTC-C-G-AA----AAACACACACAATGTTGTT--CATTCCTTTCA-T-TTTCCC-A-T---C-CAAAG-TAACAAA------------A--A-----AAAGAAACCAAAGAAA-----ATATTTGGAGATATACATTCACTTTTATTG-CAACAATTCCATCAAAATTGTGATG---TT-TTG------------GTT---ATTTTCCACCAAAACATTT-CCCATA--CG--TA-GGACCACATCTA---GCGG--ATCATATGCACTATCAA-GTGTTTACCTTTACACGGGTACT-A-TCACGA-GACAAGTATTGGGAGAATCCAAAAGTCATTGAATTTTATGAAATAA---AATGTGTTTTAATGTAATTATGCT--CGTCTTATGGATATTGAGCTTTATTATA
gi|9 : CTGCATCCCTGACAC-CTGTTATTTTCAGTCGAGGACTCCC-ATTTTTAAATT-CATTGCATT-CT-GGG--AT-TGT------G-AAACATAAAAAGACATTATGTCAATAGCACTGTTTTTG-TGTTGTCT-A-TATGG-CATAGCTAACAGA------------A--A-----ACAGGAATCA
gi|6 : ttcGCGTCTCTGACGCACA----TTTTCGACTGACGACTCGT-A-TTTT-AATTCCATTGCG-T-CC-CGGGAATCCGCTTC-C-G-CA----AAA---AAACAATTTCGTT--CATTACTTTGC-T-TTTCCTAA-T---C-CAAAG-AAACAAATTTCCCAGTTTCA--AAATGGAAAGAAACCAAAGACA-----ATATTTGAGGATA-ACATCCA-GTATATTG-CAACAATTTCATCAAAATCGCGATGTGTTT-TTGTTAATTCTA---GTTGTAATTTTACACCAAAAGGTTT-TTCCTA--CGC-CC-GGACCGGATGTA---GCCG--ATCATATGCACTA
gi|4 : TCCCAGACACACT----TTTTTGACTGAGGACCAGT-A-TTATAAACTCCATTGCG-T-CCCAGC--ACTTGTTTC-C-G----------------CAATTTCATT--CATTGCTT-CACT-TTTCCC-A-T---TTCAAAG-TAACAAA------------ACTA-----AAA-----CAAAGAAA-----ATATTTGGA-ATATTCGTCCAGTTTT-TAG-CAACAATTCCGTCTAAATCGCAATG---TTATTGTTAATTCTA---GTTGTAATTTTCCACCGAAACGTTTGCCCA-A--CG--CATGGACCGGA-ATA---GTGG--AACATATGCACTACCAT-TTGTTTACCTAAGCACAGTTATTGG-TCATGT-GACAAGAGTAAAGAGAATCCGAGTTTCATTGAAATTTATCAAACAAGGCAATG----TTGCTGTAA--ATGCT--c
gi|7 : tTTTCTGACGTACT----TTTTTGACTAAGGACCCAT-A-TTTTAAACTCCATTGTG-T-CCTGGG--ACTCGTTTC-T-GCAA----AAAAA---GCGATTTTTTT--CAGTCATTCCC-T-TTTCCC-AAT---C-CAAGG-TAACAAA------------A--A--------GAAAACAAAGAAA-----ATATTTTGGAATAATTATCCAATTAAACTG-TAACAATTCCATCTAAATTATGATG---TTATTGTTATTTCTAGATGTA---ATTTTCTACCAAAACATTT-GCGCTA--CA--CATGGACCAGATGAA---GTGAACATTATATTCACTA-CAATTTGTTTa
gi|15 : aTCCCTAATGCACA----TTTCCAGCTGAGGACTCGTGG-TTTTAAATT-CATTGCG-TCCC-AGG--AACTCTTTCAC-G-CA----AAA---ATACAATGT
gi|16 : cagctTCTGACGCACA----TTTTCAACATATGACTCTT-A-TTTAAAATTCCATTGCG-T-CC-GGG--ACACGTTTC-CAG-AA----AAA---AAGTGATGTCGTT--CATTatatactttgat
gi|13 : ca----TTTACGACCGATGACCCAT-A-TTTTAAACTCATTTGCG-T-CC-TGGA-ACCCACTTC-C-G-AA--------ATAAGCAATTTTGTT--CATT
gi|8 : ctgactttaaAA------------A--A-----AAAGAAAA-AAAGTGATACATGTATTTAGCAATATACATCCAGTTTTATTGTCACC--TTCCATCTAAATTGGGATA---TT-TTT------------GTT---AATTCTAGTTGTAACATT---CCATAAGCGCTT----ACCATATCTACTCACGT--ATTAAACGCATTatatcttattcctgctaattcaaat
gi|1 : atattccaattttTATATTCACTTTTATTG-CAACAATTCCATCAAAATCGTGATG---TT-TTT------------GTT---ATTTTCCACCAAAACGTGT-CCCCTA--TG--TA-GGACCGCATGTG---GCGG--ATCATACACACTACC-A-TTATTTGCCTTTACATCGTTATTGA-CCA-GATGACAAGAATTGGGAGAATCAGAAAGTTATTGAAATTTATGAAATAA---AATTTGTTTTGATGCAATTATATT--CACCTT
gi|2 : ---TT-CTA------------GTTGTAATTTTCTAACAAAACGTTT-GCACTA--CG--CATGGACTGGAAGTA---TTGG--A--ACATGCACTACCCT-ATTTATACCTCAACACCGTTATT-GGTCACTT-GACAAGAGTAAAGTGAATCCAAGTGTCGTTGAAATTTATAAAATAA---AATGTGTCTTAACGCTATT-TGCTTATGTCTTtttcgtatttttgttggtctttatcgtaaaatattcttacaatgaccaatcgtttgcaccataagcatcaatgatttgtattgcaaatgaacagtcaactattgtatgtcatataatcagtattaatgatttcaaagcttggcaaataagccaggcatgacagaaaagtcatgtagataatgagctttaatataag
gi|5 : taatatcgcgataaacatataattaaACCTTTACACCATTATTGA-TCACGT-GACAAGTGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATGTGTTTAAATGCAATTATGCT--CGCCCTTTTCATATTtttttactttattggtctgtaaggtatatttttcctacaatgatcaatctttgtcaccataaacatcattggtactcccaagtgaacagtttactgttttacgtaatgacattggtattcacgatttagaatcctggtaaaacagaccagtgtagttcagtgaatgaaatacaaatgaatgggacatgatgactgttgtaagggtga
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): ATCAATTGCATTATCAACTTCAGTGAATAAATACTGCTAATGAACAGTTAACTGTTTCAGGTAATATCATCCATATTTGCGATTTAAAGTTTTTACAAATGGATCAGGTAAAACAAACCAGCAAAGTTTCAG
Unaligned ( gi|11 ): ACAACACTAGTATTCACAATTAGAATCTTTACAAATAAATCTGGTAAAACAAAACTGCTAGCTGTTTTAGTGAATAAACATTAAAGGAAATGGGACATGATTATTGTTATCAGTGTGA
Unaligned ( gi|12 ): TCCTGATGCACATTTACGACACAGGACCAGTATTTCAAACATCATCGCGTCCCCGGATCAGCTTCTGTGAAAAAGCACTTTCGTTCATTATATCTCCTTTCTGCTATTTCAGC
Unaligned ( gi|14 ): ATTGTCACACAAGTCAATCTAAAGCGCGATGTCTTTGTTAAACCTGCTGATAGATTTGCATCGACAAATTTTCTCTACACCTGAACCGGATAAAGCTGATATAT
Unaligned ( gi|17 ): CCAAAATGTTTCCCCTATGTAGAACAGGACCGCATGTAGCAGATCA
Alignments
lowQualScore : 11111 2222 1 1111 11111 111 222222222222 444444444444444444444 22222 1 22222222222222222222 11111111 11 111 11
lowQualScore : 0 00000 4 0 4 4 2222 4 44 0 4 4 777 1111 3 22222 555 1 5 777777777777 8 777777777777777777777 1 00000 8 3 1 3 1 5 0 5 77777777777777777777 0 5 3 1 9999 11111111 0 66 4 11 8 0 1 6 1 1 1 444 0 0 0 11
lowQualScore : . ..... . . . . .... . .. . . . ... .... . ..... ... . . ............ . ..................... . ..... . . . . . . . . .................... . . . . .... ........ . .. . .. . . . . . . . ... . . . ..
lowQualScore : 2 44444 4 9 4 4 9999 4 66 1 4 4 888 5555 1 55555 000 0 7 333333333333 0 222222222222222222222 0 00000 2 5 0 5 4 7 8 0 88888888888888888888 2 0 4 0 4444 77777777 4 99 8 00 8 8 0 4 4 0 0 000 8 8 8 00
consensus : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGNAA---AAAA-A-GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACG-----CACGGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATGTGTTTTAATGCAATTATGCT--CGCCTTTTTCGTATT
Reference ( family-1186 ) : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGAAA---AAAA-A-GCGATTTCGTT-----CATTGC-TTTCNT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCGAAACGTTTNCC----CTACG-----CATGGACCGGATGTAGCGG--ATCATACGCACTACC--ANTTGTTTACCTTNACACCGTTATTGGTCACGTGACAAGAGTNGGGAGAATCCGAGNGTCATTGAAATTTATGAAATAA---AATGTGTTTTGATGCAATTATGCT--CGCCTTTTTCATATT
gi|1 : TATATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATCGTGATG----T---T-TT-------------TG-TTATTTTCCACCAAAACGTGTCCC----CTATG-----TA-GGACCGCATGTGGCGG--ATCATACACACTACC--A-TTATTTGCCTTTACATCGTTATTGACCAGATGACAAGAATTGGGAGAATCAGAAAGTTATTGAAATTTATGAAATAA---AATTTGTTTTGATGCAATTATATT--CACCTTTTTCGTATT
gi|12 : CCTGATGCACA----TTTACGACACAGGACCAGTA-TTTCAAACATCATCGCG-TCC--CCGG-ATCAGCTTC-TGTGA---AAAA---GCACTTTCGTT-----CATTATATCTCCT-TTtttgttggtctttatcgtaaaatattcttacaatgaccaatcgtttgcaccataagcatcaatgatttgtattgcaaatgaacagtcaactattgtatgtcatataatcagtattaatgatttcaaagcttggcaaataagccaggcatgacagaaaagtcatgtagataatgagctttaatataag
gi|13 : t----TTTACGACCGATGACCCATA-TTTTAAACTCATTTGCG-TCCT-G-GA-ACCCACTTC-CG--A---AATA-A-GCAATTTTGTT-----CATTA--TATCTT-ATTCCTGCTAA-T---T-CAAActgctatttcagc
gi|14 : ctgactttaaATTGTCACACAAGTCAATCTAA-AGCGCGATG----TC--T-TTGTT-A-AACCTGCTGATAGATTTGCATCGACAAATTTTCT----CTACA-----CCTGAACCGGATAAAGCTG--AT-ATAt
gi|15 : GCTTCCCTAATGCACA----TTTCCAGCTGAGGACTCGTGGTTTTAAATTC-ATTGCG-TCCCAG-GA-ACTC-TTTCACGCAA---AAAt
gi|16 : caCTGACGCACA----TTTTCAACATATGACTCTTA-TTTAAAATTCCATTGCG-TCC--G-GG-ACACGTTTC-CAGAA---AAAA-A-GTGATGTCGTT-----CATTtacaatgtatatactttgat
gi|17 : catCCAAAATGTTTCCC----CTATGTAGAACA-GGACCGCATGTAGCAG--ATCA
gi|2 : TAATATCGCGATAAACAT---A-TAATT-AATTCTAGTTG-TAATTTTCTAACAAAACGTTTGCA----CTACG-----CATGGACTGGAAGTATTGG--AACAT--GCACTACCCTATTTAT--ACCTCAACACCGTTATTGGTCACTTGACAAGAGTAAAGTGAATCCAAGTGTCGTTGAAATTTATAAAATAA---AATGTGTCTTAACGCTATT-TGCTTATGTCTTTTT
gi|3 : CTGTGTCTCTGACACACT----TTTTCGACTGAGGACTCACA-TTTTAAATTCCATTGCG-TCC--A-GG-ATATGTTTC-CGAAA---AACACACACAATGTTGTT-----CATTCC-TTTCAT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAACCAAAGAAA-----ATATTTGGAGATATACATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATTGTGATG----T---T-TTG----------GTT----ATTTTCCACCAAAACATTTCCC----ATACG-----TA-GGACCACATCTAGCGG--ATCATATGCACTATC--AAGTGTTTACCTTTACACGGGTACTA-TCACGAGACAAGTATTGGGAGAATCCAAAAGTCATTGAATTTTATGAAATAA---AATGTGTTTTAATGTAATTATGCT--CGTCTTATGGATATTttactttattggtctgtaaggtatatttttcctacaatgatcaatctttgtcaccataaacatcattggtactcccaagtgaacagtttactgttttacgtaatgacattggtattcacgatttagaatcctggtaaaacagaccagtgtagttcagtgaatgaaatacaaatgaatgggacatgatgactgttgtaagggtga
gi|4 : TCCCAGACACACT----TTTTTGACTGAGGACCAGTA-TTATAAACTCCATTGCG-TCC--C-AGCACTTGTTTC-CG--------------CAATTTCATT-----CATTGC-TTCACT-TTTCCC----A-T---TTCAAAG-TAACAAA--------------AC------TAAAACAAAGAAA-----ATATTTGG-AATATTCGTCCAGTTTT-TAG-CA-ACAATTCCGTCTAA-ATCGCAATG----T---TATTGTT-AATTCTAGTTG-TAATTTTCCACCGAAACGTTTGCC----CAACG-----CATGGACCGGA-ATAGTGG--AACATATGCACTACC--ATTTGTTTACCTAAGCACAGTTATTGGTCATGTGACAAGAGTAAAGAGAATCCGAGTTTCATTGAAATTTATCAAACAAGGCAATG----TTGCTGTAA--ATGCT--gagctttattata
gi|5 : tACCTTTACACCATTATTGATCACGTGACAAGTGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATGTGTTTAAATGCAATTATGCT--CGCCCTTTTCATATTa
gi|6 : GCGTCTCTGACGCACA----TTTTCGACTGACGACTCGTA-TTTTAA-TTCCATTGCG-TCCCGG-GA-ATCCGCTTC-CGCAA---AAAA-A--CAATTTCGTT-----CATTAC-TTTGCT-TTTCCT----AAT---C-CAAAG-AAACAAATTTCCCAGTTTCAAAATGGAAAGAAACCAAAGACA-----ATATTTGAGGATA-ACATCCAGTAT-ATTG-CA-ACAATTTCATCAAA-ATCGCGATG----TGTTT-TTGTT-AATTCTAGTTG-TAATTTTACACCAAAAGGTTTTTC----CTACG-----CCCGGACCGGATGTAGCCG--ATCATATGCACTACtttttgggtcaatatcataaattattcttacaacaaccaatcgtttgcatcataagcatcagtgatttgtatcccaaatgaacagtctactgttgtacgtaatgtaatcagtattcgcgatttataagctttgcaaataaaccaggtatgacggaaaagttttgtggatattaagctttaatataagg
gi|7 : CTGACGTACT----TTTTTGACTAAGGACCCATA-TTTTAAACTCCATTGTG-TCCT-G-GG-ACTCGTTTC-TGCAA---AAAA-A-GCGATTTTTTT-----CAGTCA-TTCCCT-TTTCCC----AAT---C-CAAGG-TAACAAA--------------AA------GAAAACAAAGAAA-----ATATTTTGGAATAATTATCCAATTAAACTG-TA-ACAATTCCATCTAA-ATTATGATG----T---TATTGTT-ATTTCTAGATG-TAATTTTCTACCAAAACATTTGCG----CTACA-----CATGGACCAGATGAAGTGAACATTATATTCACTACA--ATTTGTTT
gi|8 : atttAA--------------AA---AAAGAAAA-AAAGTGATACATGTATTTAGCAATATACATCCAGTTTTATTGTCA-CC--TTCCATCTAA-ATTGGGATAT---T---T-TTGTTAA-TTCTAGTTG-TAACATTCCAT--AAGCGCTTACCATATCTACT-----CACG
gi|9 : atattccaattttCTGCATCCCTGACAC-CTGTTATTTTCAGTCGAGGACTCCCA-TTTTTAAATTCATTGCATTCT--G-GG-A-----TTG-TGAAACATAAAA-A-GACATTATGTCAATAGCACTGT-TTTTGTGTTGTCT----A-TATGG-CATAGCTAACAGA--------------AA---ACAGGAATCAtattaaacgcatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATCAATTGCATTATCAACTTCAGTGAATAAATACTGCTAATGAACAGTTAACTGTTTCAGGTAATATCATCCATATTTGCGATTTAAAGTTTTTACAAATGGATCAGGTAAAACAAACCAGCAAAGTTTCAG
Unaligned ( gi|11 ): ACAACACTAGTATTCACAATTAGAATCTTTACAAATAAATCTGGTAAAACAAAACTGCTAGCTGTTTTAGTGAATAAACATTAAAGGAAATGGGACATGATTATTGTTATCAGTGTGA
Alignments
lowQualScore : 11111 2222 111111 11111 111 222222222222 444444444444444444444 22222 1 22222222222222222222 22222 11 111 11
lowQualScore : 0 00000 4 0 4 4 2222 4 44 0 4 5 777 444444 22222 222 5 777777777777 8 777777777777777777777 1 00000 8 3 1 3 1 5 0 5 77777777777777777777 0 5 1 9999 00000 0 66 11 11 0 0 1 6 1 1 1 444 8 8 3 33
lowQualScore : . ..... . . . . .... . .. . . . ... ...... ..... ... . ............ . ..................... . ..... . . . . . . . . .................... . . . .... ..... . .. .. .. . . . . . . . ... . . . ..
lowQualScore : 2 44444 4 9 4 4 9999 4 66 1 4 3 888 000000 55555 000 7 333333333333 0 222222222222222222222 0 00000 2 5 0 5 4 7 8 0 88888888888888888888 2 0 0 4444 44444 4 99 88 00 8 8 4 4 4 4 4 000 0 0 2 88
consensus : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGCAA---AAAA-A-GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGCA---C-GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
Reference ( family-1186 ) : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGNAA---AAAA-A-GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGCA---C-GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
gi|1 : TATATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATCGTGATG----T---T-TT-------------TG-TTATTTTCCACCAAAACGTGTCCC----CTATGTA-----GGACCGCATGTGGCGG--ATCATACACACTACC--ATT-ATTTGCCTTTACATCGTTATTGACCAGATGACAAGAATTGGGAGAATCAGAAAGTTATTGAAATTTATGAAATAA---AATT-TGTTTT-GATGCAATTATATT--CACCTTTTTCGTATT
gi|12 : CCTGATGCACA----TTTACGACACAGGACCAGTA-TTTCAAACATCATCGCG-TCC--CCGG-ATCAGCTTC-TGTGA---AAAA---GCACTTTCGTT-----CATTATATCTCCT-TTtttgttggtctttatcgtaaaatattcttacaatgaccaatcgtttgcaccataagcatcaatgatttgtattgcaaatgaacagtcaactattgtatgtcatataatcagtattaatgatttcaaagcttggcaaataagccaggcatgacagaaaagtcatgtagataatgagctttaatataag
gi|13 : t----TTTACGACCGATGACCCATA-TTTTAAACTCATTTGCG-TCCT-G-GA-ACCCACTTC-CG--A---AATA-A-GCAATTTTGTT-----CATTA--TATCTT-ATTCCTGCTAA-T---T-CAAActgctatttcagc
gi|14 : ctgactttaaATTGTCACACAAGTCAATCTAA-AGCGCGATG----TC--T-TTGTT-A-AACCTGCTGATAGATTTGCATCGACAAATTTTCT----CTACACC---T-GAACCGGATAAAGCTG--AT-ATATt
gi|15 : GCTTCCCTAATGCACA----TTTCCAGCTGAGGACTCGTGGTTTTAAATTC-ATTGCG-TCCCAG-GA-ACTC-TTTCACGCAA---AAA
gi|16 : caCTGACGCACA----TTTTCAACATATGACTCTTA-TTTAAAATTCCATTGCG-TCC--G-GG-ACACGTTTC-CAGAA---AAAA-A-GTGATGTCGTT-----CATTtacaatgtatatactttgat
gi|17 : catCCAAAATGTTTCCC----CTATGTAGAACAGGACCGCATGTAGCAG--ATCA
gi|2 : TAATATCGCGATAAACAT---A-TAATT-AATTCTAGTTG-TAATTTTCTAACAAAACGTTTGCA----CTACGCA---T-GGACTGGAAGTATTGG--A--ACATGCACTACCCTATTTAT--ACCTCAACACCGTTATTGGTCACTTGACAAGAGTAAAGTGAATCCAAGTGTCGTTGAAATTTATAAAATAA---AATG-TGTCTT-AACGCTATT-TGCTTATGTCTTTTT
gi|3 : CTGTGTCTCTGACACACT----TTTTCGACTGAGGACTCACA-TTTTAAATTCCATTGCG-TCC--A-GG-ATATGTTTC-CGAAA---AACACACACAATGTTGTT-----CATTCC-TTTCAT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAACCAAAGAAA-----ATATTTGGAGATATACATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATTGTGATG----T---T-TTG----------GTT----ATTTTCCACCAAAACATTTCCC----ATACGTA-----GGACCACATCTAGCGG--ATCATATGCACTATC--AAGTGTTTACCTTTACACGGGTACTA-TCACGAGACAAGTATTGGGAGAATCCAAAAGTCATTGAATTTTATGAAATAA---AATG-TGTTTT-AATGTAATTATGCT--CGTCTTttactttattggtctgtaaggtatatttttcctacaatgatcaatctttgtcaccataaacatcattggtactcccaagtgaacagtttactgttttacgtaatgacattggtattcacgatttagaatcctggtaaaacagaccagtgtagttcagtgaatgaaatacaaatgaatgggacatgatgactgttgtaagggtga
gi|4 : TCCCAGACACACT----TTTTTGACTGAGGACCAGTA-TTATAAACTCCATTGCG-TCC--C-AGCACTTGTTTC-CGCAA--------------TTTCATT-----CATTGC-TTCACT-TTTCCC----A-T---TTCAAAG-TAACAAA--------------AC------TAAAACAAAGAAA-----ATATTTGG-AATATTCGTCCAGTTTT-TAG-CA-ACAATTCCGTCTAA-ATCGCAATG----T---TATTGTT-AATTCTAGTTG-TAATTTTCCACCGAAACGTTTGCC----CAACGCA---T-GGACCGGA-ATAGTGG--AACATATGCACTACC--ATTTGTTTACCTAAGCACAGTTATTGGTCATGTGACAAGAGTAAAGAGAATCCGAGTTTCATTGAAATTTATCAAACAAGGCAATGTTGCTGTAAATGCatggatattgagctttattata
gi|5 : tACCTTTACACCATTATTGATCACGTGACAAGTGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTA-AATGCAATTATGCT--CGCCCTTTTCATATTta
gi|6 : GCGTCTCTGACGCACA----TTTTCGACTGACGACTCGTA-TTTTAA-TTCCATTGCG-TCCCGG-GA-ATCCGCTTC-CGCAA---AAAA-A--CAATTTCGTT-----CATTAC-TTTGCT-TTTCCT----AAT---C-CAAAG-AAACAAATTTCCCAGTTTCAAAATGGAAAGAAACCAAAGACA-----ATATTTGAGGATA-ACATCCAGTAT-ATTG-CA-ACAATTTCATCAAA-ATCGCGATG----TGTTT-TTGTT-AATTCTAGTTG-TAATTTTACACCAAAAGGTTTTTC----CTACGCC---C-GGACCGGATGTAGCCG--ATCATATGCACTACtttttgggtcaatatcataaattattcttacaacaaccaatcgtttgcatcataagcatcagtgatttgtatcccaaatgaacagtctactgttgtacgtaatgtaatcagtattcgcgatttataagctttgcaaataaaccaggtatgacggaaaagttttgtggatattaagctttaatataagg
gi|7 : CTGACGTACT----TTTTTGACTAAGGACCCATA-TTTTAAACTCCATTGTG-TCCT-G-GG-ACTCGTTTC-TGCAA---AAAA-A-GCGATTTTTTT-----CAGTCA-TTCCCT-TTTCCC----AAT---C-CAAGG-TAACAAA--------------AA------GAAAACAAAGAAA-----ATATTTTGGAATAATTATCCAATTAAACTG-TA-ACAATTCCATCTAA-ATTATGATG----T---TATTGTT-ATTTCTAGATG-TAATTTTCTACCAAAACATTTGCG----CTACACA---T-GGACCAGATGAAGTGAACATTATATTCACTACA--ATTTGTTT
gi|8 : atttAA--------------AA---AAAGAAAA-AAAGTGATACATGTATTTAGCAATATACATCCAGTTTTATTGTCA-CC--TTCCATCTAA-ATTGGGATAT---T---T-TTGTTAA-TTCTAGTTG-TAACATTCCAT--AAGCGCTTACCATATCTACTCA---C-G
gi|9 : atattccaattttCTGCATCCCTGACAC-CTGTTATTTTCAGTCGAGGACTCCCA-TTTTTAAATTCATTGCATTCT--G-GG-A-----TTG-TGAAACATAAAA-A-GACATTATGTCAATAGCACTGT-TTTTGTGTTGTCT----A-TATGG-CATAGCTAACAGA--------------AA---ACAGGAATCAtattaaacgcatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATCAATTGCATTATCAACTTCAGTGAATAAATACTGCTAATGAACAGTTAACTGTTTCAGGTAATATCATCCATATTTGCGATTTAAAGTTTTTACAAATGGATCAGGTAAAACAAACCAGCAAAGTTTCAG
Unaligned ( gi|11 ): ACAACACTAGTATTCACAATTAGAATCTTTACAAATAAATCTGGTAAAACAAAACTGCTAGCTGTTTTAGTGAATAAACATTAAAGGAAATGGGACATGATTATTGTTATCAGTGTGA
Alignments
lowQualScore : 11111 2222 1111111 11111 111 222222222222 444444444444444444444 22222 1 22222222222222222222 111111 11 111 11
lowQualScore : 0 00000 4 0 4 4 2222 4 44 0 4 8 777 2222222 22222 222 5 777777777777 8 777777777777777777777 1 00000 8 3 1 3 1 5 0 5 77777777777777777777 0 5 1 9999 666666 0 66 11 11 0 0 1 6 1 1 1 444 8 8 3 33
lowQualScore : . ..... . . . . .... . .. . . . ... ....... ..... ... . ............ . ..................... . ..... . . . . . . . . .................... . . . .... ...... . .. .. .. . . . . . . . ... . . . ..
lowQualScore : 2 44444 4 9 4 4 9999 4 66 1 4 4 888 8888888 55555 000 7 333333333333 0 222222222222222222222 0 00000 2 5 0 5 4 7 8 0 88888888888888888888 2 0 0 4444 888888 4 99 88 00 8 8 4 4 4 4 4 000 0 0 2 88
consensus : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGCAA---AAAAA---GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGC---AC-GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
Reference ( family-1186 ) : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGCAA---AAAAA---GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGC---AC-GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
gi|1 : TATATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATCGTGATG----T---T-TT-------------TG-TTATTTTCCACCAAAACGTGTCCC----CTATGT---A--GGACCGCATGTGGCGG--ATCATACACACTACC--ATT-ATTTGCCTTTACATCGTTATTGACCAGATGACAAGAATTGGGAGAATCAGAAAGTTATTGAAATTTATGAAATAA---AATT-TGTTTT-GATGCAATTATATT--CACCTTTTTCGTATT
gi|12 : CCTGATGCACA----TTTACGACACAGGACCAGTA-TTTCAAACATCATCGCG-TCC--CCGG-ATCAGCTTC-TGTGA---AAAA----GCACTTTCGTT-----CATTATATCTCCT-TTtttgttggtctttatcgtaaaatattcttacaatgaccaatcgtttgcaccataagcatcaatgatttgtattgcaaatgaacagtcaactattgtatgtcatataatcagtattaatgatttcaaagcttggcaaataagccaggcatgacagaaaagtcatgtagataatgagctttaatataag
gi|13 : t----TTTACGACCGATGACCCATA-TTTTAAACTCATTTGCG-TCCT-G-GA-ACCCACTTC-CG--A---AATAA---GCAATTTTGTT-----CATTA--TATCTT-ATTCCTGCTAA-T---T-CAAActgctatttcagc
gi|14 : ctgactttaaATTGTCACACAAGTCAATCTAA-AGCGCGATG----TC--T-TTGTT-A-AACCTGCTGATAGATTTGCATCGACAAATTTTCT----CTACAC---CT-GAACCGGATAAAGCTG--AT-ATATt
gi|15 : GCTTCCCTAATGCACA----TTTCCAGCTGAGGACTCGTGGTTTTAAATTC-ATTGCG-TCCCAG-GA-ACTC-TTTCACGCAA---AAA
gi|16 : caCTGACGCACA----TTTTCAACATATGACTCTTA-TTTAAAATTCCATTGCG-TCC--G-GG-ACACGTTTC-CAGAA---AAAAA---GTGATGTCGTT-----CATTtacaatgtatatactttgat
gi|17 : catCCAAAATGTTTCCC----CTATGTAGAACAGGACCGCATGTAGCAG--ATCA
gi|2 : TAATATCGCGATAAACAT---A-TAATT-AATTCTAGTTG-TAATTTTCTAACAAAACGTTTGCA----CTACGC---AT-GGACTGGAAGTATTGG--A--ACATGCACTACCCTATTTAT--ACCTCAACACCGTTATTGGTCACTTGACAAGAGTAAAGTGAATCCAAGTGTCGTTGAAATTTATAAAATAA---AATG-TGTCTT-AACGCTATT-TGCTTATGTCTTTTT
gi|3 : CTGTGTCTCTGACACACT----TTTTCGACTGAGGACTCACA-TTTTAAATTCCATTGCG-TCC--A-GG-ATATGTTTC-CG-AA---AAACACACACAATGTTGTT-----CATTCC-TTTCAT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAACCAAAGAAA-----ATATTTGGAGATATACATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATTGTGATG----T---T-TTG----------GTT----ATTTTCCACCAAAACATTTCCC----ATACGT---A--GGACCACATCTAGCGG--ATCATATGCACTATC--AAGTGTTTACCTTTACACGGGTACTA-TCACGAGACAAGTATTGGGAGAATCCAAAAGTCATTGAATTTTATGAAATAA---AATG-TGTTTT-AATGTAATTATGCT--CGTCTTttactttattggtctgtaaggtatatttttcctacaatgatcaatctttgtcaccataaacatcattggtactcccaagtgaacagtttactgttttacgtaatgacattggtattcacgatttagaatcctggtaaaacagaccagtgtagttcagtgaatgaaatacaaatgaatgggacatgatgactgttgtaagggtga
gi|4 : TCCCAGACACACT----TTTTTGACTGAGGACCAGTA-TTATAAACTCCATTGCG-TCC--C-AGCACTTGTTTC-CGCAA---------------TTTCATT-----CATTGC-TTCACT-TTTCCC----A-T---TTCAAAG-TAACAAA--------------AC------TAAAACAAAGAAA-----ATATTTGG-AATATTCGTCCAGTTTT-TAG-CA-ACAATTCCGTCTAA-ATCGCAATG----T---TATTGTT-AATTCTAGTTG-TAATTTTCCACCGAAACGTTTGCC----CAACGC---AT-GGACCGGA-ATAGTGG--AACATATGCACTACC--ATTTGTTTACCTAAGCACAGTTATTGGTCATGTGACAAGAGTAAAGAGAATCCGAGTTTCATTGAAATTTATCAAACAAGGCAATGTTGCTGTAAATGCatggatattgagctttattata
gi|5 : tACCTTTACACCATTATTGATCACGTGACAAGTGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTA-AATGCAATTATGCT--CGCCCTTTTCATATTta
gi|6 : GCGTCTCTGACGCACA----TTTTCGACTGACGACTCGTA-TTTTAA-TTCCATTGCG-TCCCGG-GA-ATCCGCTTC-CGCAA---AAAAA----CAATTTCGTT-----CATTAC-TTTGCT-TTTCCT----AAT---C-CAAAG-AAACAAATTTCCCAGTTTCAAAATGGAAAGAAACCAAAGACA-----ATATTTGAGGATA-ACATCCAGTAT-ATTG-CA-ACAATTTCATCAAA-ATCGCGATG----TGTTT-TTGTT-AATTCTAGTTG-TAATTTTACACCAAAAGGTTTTTC----CTACGC---CC-GGACCGGATGTAGCCG--ATCATATGCACTACtttttgggtcaatatcataaattattcttacaacaaccaatcgtttgcatcataagcatcagtgatttgtatcccaaatgaacagtctactgttgtacgtaatgtaatcagtattcgcgatttataagctttgcaaataaaccaggtatgacggaaaagttttgtggatattaagctttaatataagg
gi|7 : CTGACGTACT----TTTTTGACTAAGGACCCATA-TTTTAAACTCCATTGTG-TCCT-G-GG-ACTCGTTTC-TGCAA---AAAAA---GCGATTTTTTT-----CAGTCA-TTCCCT-TTTCCC----AAT---C-CAAGG-TAACAAA--------------AA------GAAAACAAAGAAA-----ATATTTTGGAATAATTATCCAATTAAACTG-TA-ACAATTCCATCTAA-ATTATGATG----T---TATTGTT-ATTTCTAGATG-TAATTTTCTACCAAAACATTTGCG----CTACAC---AT-GGACCAGATGAAGTGAACATTATATTCACTACA--ATTTGTTT
gi|8 : atttAA--------------AA---AAAGAAAA-AAAGTGATACATGTATTTAGCAATATACATCCAGTTTTATTGTCA-CC--TTCCATCTAA-ATTGGGATAT---T---T-TTGTTAA-TTCTAGTTG-TAACATTCCAT--AAGCGCTTACCATATCTACTC---AC-G
gi|9 : atattccaattttCTGCATCCCTGACAC-CTGTTATTTTCAGTCGAGGACTCCCA-TTTTTAAATTCATTGCATTCT--G-GG-A-----TTG-TGAAACATAAAAA---GACATTATGTCAATAGCACTGT-TTTTGTGTTGTCT----A-TATGG-CATAGCTAACAGA--------------AA---ACAGGAATCAtattaaacgcatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATCAATTGCATTATCAACTTCAGTGAATAAATACTGCTAATGAACAGTTAACTGTTTCAGGTAATATCATCCATATTTGCGATTTAAAGTTTTTACAAATGGATCAGGTAAAACAAACCAGCAAAGTTTCAG
Unaligned ( gi|11 ): ACAACACTAGTATTCACAATTAGAATCTTTACAAATAAATCTGGTAAAACAAAACTGCTAGCTGTTTTAGTGAATAAACATTAAAGGAAATGGGACATGATTATTGTTATCAGTGTGA
Alignments
lowQualScore : 11111 2222 1111111 11111 111 222222222222 444444444444444444444 22222 1 22222222222222222222 111111 11 111 11
lowQualScore : 0 00000 4 0 4 4 2222 4 44 0 4 8 777 2222222 22222 222 5 777777777777 8 777777777777777777777 1 00000 8 3 1 3 1 5 0 5 77777777777777777777 0 5 1 9999 666666 0 66 11 11 0 0 1 6 1 1 1 444 8 8 3 33
lowQualScore : . ..... . . . . .... . .. . . . ... ....... ..... ... . ............ . ..................... . ..... . . . . . . . . .................... . . . .... ...... . .. .. .. . . . . . . . ... . . . ..
lowQualScore : 2 44444 4 9 4 4 9999 4 66 1 4 4 888 8888888 55555 000 7 333333333333 0 222222222222222222222 0 00000 2 5 0 5 4 7 8 0 88888888888888888888 2 0 0 4444 888888 4 99 88 00 8 8 4 4 4 4 4 000 0 0 2 88
consensus : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGCAA---AAAAA---GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGC---AC-GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
Reference ( family-1186 ) : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGCAA---AAAAA---GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGC---AC-GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
gi|1 : TATATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATCGTGATG----T---T-TT-------------TG-TTATTTTCCACCAAAACGTGTCCC----CTATGT---A--GGACCGCATGTGGCGG--ATCATACACACTACC--ATT-ATTTGCCTTTACATCGTTATTGACCAGATGACAAGAATTGGGAGAATCAGAAAGTTATTGAAATTTATGAAATAA---AATT-TGTTTT-GATGCAATTATATT--CACCTTTTTCGTATT
gi|12 : CCTGATGCACA----TTTACGACACAGGACCAGTA-TTTCAAACATCATCGCG-TCC--CCGG-ATCAGCTTC-TGTGA---AAAA----GCACTTTCGTT-----CATTATATCTCCT-TTtttgttggtctttatcgtaaaatattcttacaatgaccaatcgtttgcaccataagcatcaatgatttgtattgcaaatgaacagtcaactattgtatgtcatataatcagtattaatgatttcaaagcttggcaaataagccaggcatgacagaaaagtcatgtagataatgagctttaatataag
gi|13 : t----TTTACGACCGATGACCCATA-TTTTAAACTCATTTGCG-TCCT-G-GA-ACCCACTTC-CG--A---AATAA---GCAATTTTGTT-----CATTA--TATCTT-ATTCCTGCTAA-T---T-CAAActgctatttcagc
gi|14 : ctgactttaaATTGTCACACAAGTCAATCTAA-AGCGCGATG----TC--T-TTGTT-A-AACCTGCTGATAGATTTGCATCGACAAATTTTCT----CTACAC---CT-GAACCGGATAAAGCTG--AT-ATATt
gi|15 : GCTTCCCTAATGCACA----TTTCCAGCTGAGGACTCGTGGTTTTAAATTC-ATTGCG-TCCCAG-GA-ACTC-TTTCACGCAA---AAA
gi|16 : caCTGACGCACA----TTTTCAACATATGACTCTTA-TTTAAAATTCCATTGCG-TCC--G-GG-ACACGTTTC-CAGAA---AAAAA---GTGATGTCGTT-----CATTtacaatgtatatactttgat
gi|17 : catCCAAAATGTTTCCC----CTATGTAGAACAGGACCGCATGTAGCAG--ATCA
gi|2 : TAATATCGCGATAAACAT---A-TAATT-AATTCTAGTTG-TAATTTTCTAACAAAACGTTTGCA----CTACGC---AT-GGACTGGAAGTATTGG--A--ACATGCACTACCCTATTTAT--ACCTCAACACCGTTATTGGTCACTTGACAAGAGTAAAGTGAATCCAAGTGTCGTTGAAATTTATAAAATAA---AATG-TGTCTT-AACGCTATT-TGCTTATGTCTTTTT
gi|3 : CTGTGTCTCTGACACACT----TTTTCGACTGAGGACTCACA-TTTTAAATTCCATTGCG-TCC--A-GG-ATATGTTTC-CG-AA---AAACACACACAATGTTGTT-----CATTCC-TTTCAT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAACCAAAGAAA-----ATATTTGGAGATATACATTCACTTTTATTG-CA-ACAATTCCATCAAA-ATTGTGATG----T---T-TTG----------GTT----ATTTTCCACCAAAACATTTCCC----ATACGT---A--GGACCACATCTAGCGG--ATCATATGCACTATC--AAGTGTTTACCTTTACACGGGTACTA-TCACGAGACAAGTATTGGGAGAATCCAAAAGTCATTGAATTTTATGAAATAA---AATG-TGTTTT-AATGTAATTATGCT--CGTCTTttactttattggtctgtaaggtatatttttcctacaatgatcaatctttgtcaccataaacatcattggtactcccaagtgaacagtttactgttttacgtaatgacattggtattcacgatttagaatcctggtaaaacagaccagtgtagttcagtgaatgaaatacaaatgaatgggacatgatgactgttgtaagggtga
gi|4 : TCCCAGACACACT----TTTTTGACTGAGGACCAGTA-TTATAAACTCCATTGCG-TCC--C-AGCACTTGTTTC-CGCAA---------------TTTCATT-----CATTGC-TTCACT-TTTCCC----A-T---TTCAAAG-TAACAAA--------------AC------TAAAACAAAGAAA-----ATATTTGG-AATATTCGTCCAGTTTT-TAG-CA-ACAATTCCGTCTAA-ATCGCAATG----T---TATTGTT-AATTCTAGTTG-TAATTTTCCACCGAAACGTTTGCC----CAACGC---AT-GGACCGGA-ATAGTGG--AACATATGCACTACC--ATTTGTTTACCTAAGCACAGTTATTGGTCATGTGACAAGAGTAAAGAGAATCCGAGTTTCATTGAAATTTATCAAACAAGGCAATGTTGCTGTAAATGCatggatattgagctttattata
gi|5 : tACCTTTACACCATTATTGATCACGTGACAAGTGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTA-AATGCAATTATGCT--CGCCCTTTTCATATTta
gi|6 : GCGTCTCTGACGCACA----TTTTCGACTGACGACTCGTA-TTTTAA-TTCCATTGCG-TCCCGG-GA-ATCCGCTTC-CGCAA---AAAAA----CAATTTCGTT-----CATTAC-TTTGCT-TTTCCT----AAT---C-CAAAG-AAACAAATTTCCCAGTTTCAAAATGGAAAGAAACCAAAGACA-----ATATTTGAGGATA-ACATCCAGTAT-ATTG-CA-ACAATTTCATCAAA-ATCGCGATG----TGTTT-TTGTT-AATTCTAGTTG-TAATTTTACACCAAAAGGTTTTTC----CTACGC---CC-GGACCGGATGTAGCCG--ATCATATGCACTACtttttgggtcaatatcataaattattcttacaacaaccaatcgtttgcatcataagcatcagtgatttgtatcccaaatgaacagtctactgttgtacgtaatgtaatcagtattcgcgatttataagctttgcaaataaaccaggtatgacggaaaagttttgtggatattaagctttaatataagg
gi|7 : CTGACGTACT----TTTTTGACTAAGGACCCATA-TTTTAAACTCCATTGTG-TCCT-G-GG-ACTCGTTTC-TGCAA---AAAAA---GCGATTTTTTT-----CAGTCA-TTCCCT-TTTCCC----AAT---C-CAAGG-TAACAAA--------------AA------GAAAACAAAGAAA-----ATATTTTGGAATAATTATCCAATTAAACTG-TA-ACAATTCCATCTAA-ATTATGATG----T---TATTGTT-ATTTCTAGATG-TAATTTTCTACCAAAACATTTGCG----CTACAC---AT-GGACCAGATGAAGTGAACATTATATTCACTACA--ATTTGTTT
gi|8 : atttAA--------------AA---AAAGAAAA-AAAGTGATACATGTATTTAGCAATATACATCCAGTTTTATTGTCA-CC--TTCCATCTAA-ATTGGGATAT---T---T-TTGTTAA-TTCTAGTTG-TAACATTCCAT--AAGCGCTTACCATATCTACTC---AC-G
gi|9 : atattccaattttCTGCATCCCTGACAC-CTGTTATTTTCAGTCGAGGACTCCCA-TTTTTAAATTCATTGCATTCT--G-GG-A-----TTG-TGAAACATAAAAA---GACATTATGTCAATAGCACTGT-TTTTGTGTTGTCT----A-TATGG-CATAGCTAACAGA--------------AA---ACAGGAATCAtattaaacgcatt
blockSeqs : TGTTA C G T CAG C CC A C CAT ACACACA AATAG CC G ATATGG C TTTCCCAGTTTCAAAATGGAA A TACAT G T C T T C T AACATATAATTAATT A T ATAT AGAACA AC TC CT A G A A T GGC T A A TA
blockSeqs : A T . . CGG . CT . G . AGCA . GC . ATTT . AAAA C . G T G T T . . TGTTTTTGTTAATT . C . CT . TC . T G T T A . . . A .
blockSeqs : A A . . TG . CA . C . AGTG . AC . AATC . AAAC A . C A G A . . . TTATTGTTAATT . G . AT . AC . A A A A T . . . . .
blockSeqs : T T . . TG . TA . C . AGCG . CA . AATC . AC A . . T A T . . . TTATTGTTATTT . C . AT . TC . T . T T A . . .
blockSeqs : T T . . G . CT . C . AGAC . GT . ATC AA T . G . . . . TTTTTGTTAATT . G . CC . TT
blockSeqs : A T . . A . TC . A . ACA . A . . . . TCTTTGTTAAA . T . AT . T
blockSeqs : T T . . C . CT . . . . . . TTTTG . G . AC . .
blockSeqs : C . . G . . . . . A . A
blockSeqCons : CG** AGCG*** NC* AATC******** TTTTTGTTAATT******** AT****
originalCons : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCC--G-GG-ACCCGTTTC-CGCAA---AAAAA---GCGATTTCGTT-----CATTNC-TTTCCT-TTTCCC----A-T---C-CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATG----T---T-TTGTT-A-TTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGC---AC-GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
finalCons : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCG-TCCCG--GG-ACCCGTTTC-CGCAA---AAAAAGCG---ATTTCGTT-----CATTNC-TTTCCT-TTTCCCAATC--------CAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAA-ATCGCGATGTTTTTGTTAATT--------CTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACGCAT----GGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATCAATTGCATTATCAACTTCAGTGAATAAATACTGCTAATGAACAGTTAACTGTTTCAGGTAATATCATCCATATTTGCGATTTAAAGTTTTTACAAATGGATCAGGTAAAACAAACCAGCAAAGTTTCAG
Unaligned ( gi|11 ): ACAACACTAGTATTCACAATTAGAATCTTTACAAATAAATCTGGTAAAACAAAACTGCTAGCTGTTTTAGTGAATAAACATTAAAGGAAATGGGACATGATTATTGTTATCAGTGTGA
Alignments
lowQualScore : 11111 1111 111111 11111 111 111 111 33333333333333 111 22222 1 11111111 11 111 11
lowQualScore : 0 00000 4 0 4 0 0000 4 8 777 222222 22222 222 111 3 111 8 0 99999999999999 111 1 00000 8 3 1 3 1 5 2 0 77 66 3 2 5 1 9999 11111111 0 66 11 11 0 0 1 6 1 1 1 444 8 8 3 33
lowQualScore : . ..... . . . . .... . . ... ...... ..... ... ... . ... . . .............. ... . ..... . . . . . . . . .. .. . . . . .... ........ . .. .. .. . . . . . . . ... . . . ..
lowQualScore : 2 44444 4 9 4 9 9999 4 4 888 666666 55555 000 777 5 777 0 8 22222222222222 777 0 00000 2 5 0 5 4 7 1 4 99 88 1 1 0 0 4444 77777777 4 99 88 00 8 8 4 4 4 4 4 000 0 0 2 88
consensus : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCGTCCCGGGA-CCCGTTTC-CGCAA---AAAAA---GCGATTTCGTT-----CATTNC-TTTCCTTTTC---CCAAT---CCAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCNAAATCGCGATGT--TTTTGTTAATTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACG-----CACGGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
Reference ( family-1186 ) : CTGCGTCCCTGACGCACN----TTTTCGACCGAGGACCCGTA-TTTTAAACTCCATTGCGTCCCGGGA-CCCGTTTC-CGCAA---AAAAA---GCGATTTCGTT-----CATTNC-TTTCCTTTTC---CCAAT---CCAAAG-TAACAAA--------------AA---AAAGAAANCAAAGAAA-----ATATTTGGGAATATACATCCAGTTTTATTG-CA-ACAATTCCATCTAAATCGCGATGT--TTTTGTTAATTCTAGTTG-TAATTTTCCACCAAAACGTTTNCC----CTACG-----CATGGACCGGATGTAGCGG--ATCATATGCACTACC--ATTTGTTTACCTTTACACCGTTATTGGTCACGTGACAAGAGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTT-AATGCAATTATGCT--CGCCTTTTTCGTATT
gi|1 : TATATTCACTTTTATTG-CA-ACAATTCCATCAAAATCGTGATGT--TTTTGTTA--------------TTTTCCACCAAAACGTGTCCC----CTATG-----TA-GGACCGCATGTGGCGG--ATCATACACACTACC--ATT-ATTTGCCTTTACATCGTTATTGACCAGATGACAAGAATTGGGAGAATCAGAAAGTTATTGAAATTTATGAAATAA---AATT-TGTTTT-GATGCAATTATATT--CACCTTTTTCGTATT
gi|12 : CCTGATGCACA----TTTACGACACAGGACCAGTA-TTTCAAACATCATCGCGTCCCCGGA-TCAGCTTC-TGT-G---AAAAA---GCACTTTCGTT-----CATTATATCTCCTTTtttgttggtctttatcgtaaaatattcttacaatgaccaatcgtttgcaccataagcatcaatgatttgtattgcaaatgaacagtcaactattgtatgtcatataatcagtattaatgatttcaaagcttggcaaataagccaggcatgacagaaaagtcatgtagataatgagctttaatataag
gi|13 : t----TTTACGACCGATGACCCATA-TTTTAAACTCATTTGCGTCCTGGAA-CCCACTTC-CG--A---AATAA---GCAATTTTGTT-----CATTA--TATCTTATTCCTGCTAAT---TCAAActgctatttcagc
gi|14 : ctgactttaaATTGTCACACAAGTCAATCTAAAGCGCGATGT--CTTTGTTAAACCT-GCTGATAGATTTGCATCGACAAATTTTCT----CTACA-----CCTGAACCGGATAAAGCTG--AT-ATATt
gi|15 : GCTTCCCTAATGCACA----TTTCCAGCTGAGGACTCGTGGTTTTAAATTC-ATTGCGTCCCAGGA-ACTCTTTCACGCAA---AAA
gi|16 : caCTGACGCACA----TTTTCAACATATGACTCTTA-TTTAAAATTCCATTGCGT-CCGGGA-CACGTTTC-CAGAA---AAAAA---GTGATGTCGTT-----CATTtacaatgtatatactttgat
gi|17 : catCCAAAATGTTTCCC----CTATGTAGAACA-GGACCGCATGTAGCAG--ATCA
gi|2 : TTAATTCTAGTTG-TAATTTTCTAACAAAACGTTTGCA----CTACG-----CATGGACTGGAAGTATTGG--A--ACATGCACTACCCTATTTAT--ACCTCAACACCGTTATTGGTCACTTGACAAGAGTAAAGTGAATCCAAGTGTCGTTGAAATTTATAAAATAA---AATG-TGTCTT-AACGCTATT-TGCTTATGTCTTTTT
gi|3 : taatatcgcgataaacatataaCTGTGTCTCTGACACACT----TTTTCGACTGAGGACTCACA-TTTTAAATTCCATTGCGTCC-AGGA-TATGTTTC-CG-AA---AAACACACACAATGTTGTT-----CATTCC-TTTCATTTTC---CCA-T---CCAAAG-TAACAAA--------------AA---AAAGAAACCAAAGAAA-----ATATTTGGAGATATACATTCACTTTTATTG-CA-ACAATTCCATCAAAATTGTGATGT--TTTGGTTA--------------TTTTCCACCAAAACATTTCCC----ATACG-----TA-GGACCACATCTAGCGG--ATCATATGCACTATC--AAGTGTTTACCTTTACACGGGTACTA-TCACGAGACAAGTATTGGGAGAATCCAAAAGTCATTGAATTTTATGAAATAA---AATG-TGTTTT-AATGTAATTATGCT--CGTCTTttactttattggtctgtaaggtatatttttcctacaatgatcaatctttgtcaccataaacatcattggtactcccaagtgaacagtttactgttttacgtaatgacattggtattcacgatttagaatcctggtaaaacagaccagtgtagttcagtgaatgaaatacaaatgaatgggacatgatgactgttgtaagggtga
gi|4 : TCCCAGACACACT----TTTTTGACTGAGGACCAGTA-TTATAAACTCCATTGCGTCCCAGCA-CTTGTTTC-CGCAA---------------TTTCATT-----CATTGC-TTCACTTTTC---CCATT---TCAAAG-TAACAAA--------------AC------TAAAACAAAGAAA-----ATATTTGG-AATATTCGTCCAGTTTT-TAG-CA-ACAATTCCGTCTAAATCGCAATGT--TATTGTTAATTCTAGTTG-TAATTTTCCACCGAAACGTTTGCC----CAACG-----CATGGACCGGA-ATAGTGG--AACATATGCACTACC--ATTTGTTTACCTAAGCACAGTTATTGGTCATGTGACAAGAGTAAAGAGAATCCGAGTTTCATTGAAATTTATCAAACAAGGCAATGTTGCTGTAAATGCatggatattgagctttattata
gi|5 : tACCTTTACACCATTATTGATCACGTGACAAGTGTTGGGAGAATCCGAAAGTCATTGAAATTTATGAAATAA---AATG-TGTTTA-AATGCAATTATGCT--CGCCCTTTTCATATTta
gi|6 : GCGTCTCTGACGCACA----TTTTCGACTGACGACTCGTA-TTTTAA-TTCCATTGCGTCCCGGGAATCCGCTTC-CGCAA---AAAAA----CAATTTCGTT-----CATTAC-TTTGCTTTTC---CTAAT---CCAAAG-AAACAAATTTCCCAGTTTCAAAATGGAAAGAAACCAAAGACA-----ATATTTGAGGATA-ACATCCAGTAT-ATTG-CA-ACAATTTCATCAAAATCGCGATGTGTTTTTGTTAATTCTAGTTG-TAATTTTACACCAAAAGGTTTTTC----CTACG-----CCCGGACCGGATGTAGCCG--ATCATATGCACTACtttttgggtcaatatcataaattattcttacaacaaccaatcgtttgcatcataagcatcagtgatttgtatcccaaatgaacagtctactgttgtacgtaatgtaatcagtattcgcgatttataagctttgcaaataaaccaggtatgacggaaaagttttgtggatattaagctttaatataagg
gi|7 : CTGACGTACT----TTTTTGACTAAGGACCCATA-TTTTAAACTCCATTGTGTCCTGGGA-CTCGTTTC-TGCAA---AAAAA---GCGATTTTTTT-----CAGTCA-TTCCCTTTTC---CCAAT---CCAAGG-TAAC-----------------AA---AAAGAAAACAAAGAAA-----ATATTTTGGAATAATTATCCAATTAAACTG-TA-ACAATTCCATCTAAATTATGATGT--TATTGTTATTTCTAGATG-TAATTTTCTACCAAAACATTTGCG----CTACA-----CATGGACCAGATGAAGTGAACATTATATTCACTACA--ATTTGTTT
gi|8 : atttAA--------------AA---AAAGAAAA-AAAGTGATACATGTATTTAGCAATATACATCCAGTTTTATTGTCA-CC--TTCCATCTAAATTGGGATAT--TTTTGTTAATTCTAGTTG-TAACATTCCAT--AAGCGCTTACCATATCTACT-----CACG
gi|9 : atattccaattttCTGCATCCCTGACAC-CTGTTATTTTCAGTCGAGGACTCCCA-TTTTTAAATTCATTGCATTCTGGGA------TTG-TGAAACATAAAAA---GACATTATGTCAATAGCACTGT-TTTTGTGTTG---TCTATATGGCATAGCTAACAGA--------------AA---ACAGGAATCAtattaaacgcatt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): ATCAATTGCATTATCAACTTCAGTGAATAAATACTGCTAATGAACAGTTAACTGTTTCAGGTAATATCATCCATATTTGCGATTTAAAGTTTTTACAAATGGATCAGGTAAAACAAACCAGCAAAGTTTCAG
Unaligned ( gi|11 ): ACAACACTAGTATTCACAATTAGAATCTTTACAAATAAATCTGGTAAAACAAAACTGCTAGCTGTTTTAGTGAATAAACATTAAAGGAAATGGGACATGATTATTGTTATCAGTGTGA