lowQualScore : 11111111 666 2222 33 333 1111111111 1 66666666666666666666 4 1 777
lowQualScore : 88 9 7 22222222 4 0 55 4 5 22 4 000 99 0000 5 1 3 4 11 9 111 8888 777 9999999999 4 5 2 5 6 77 8 6 99999999999999999999 8 0 6 6 7 000 3 6 6 6 6
lowQualScore : .. . . ........ . . .. . . .. . ... .. .... . . . . .. . ... .... ... .......... . . . . . .. . . .................... . . . . . ... . . . . .
lowQualScore : 88 5 1 88888888 4 8 22 3 4 88 4 999 22 4444 7 2 9 0 22 4 000 8888 000 4444444444 4 0 7 0 0 77 0 0 88888888888888888888 0 0 0 0 0 000 0 0 0 0 0
consensus : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCAC-----T--AAAAAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTTTCAAAGG--TCCGGGCCA-GTCACGTTTCTTGTCGGTTAATTACGTC-TTTTAGTTAAATTCGGTAA-TCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATA---------G---------TT-TGTGGTC-AAAATCAATAACAAGCATTCAGGTAATTGTAACCGAGAAGAGAACAGCTTG---CCAAAGANAGTTCTAGAACTTTCTGATCCTTCCCAACGGAAGATAATGTTTTT
Reference ( gi|1 ) : AGGGATCATTTTGGGCTGCACCATTGCGCCATACACCCGTTAAAATTCCAGATGGCGCAC-----T--AAAAAGT-TTGGTGTGTGCTGATTTGGTGCATTCAATTT-CAGTATGGCCCATAA--TTCAAAGG--TCAGGACCA-GTCACGTTTCTTGTCGGTTAATTACATC-TTAAAGTTAAATTTGGT-A-TCTTTGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTCTTTTTCACATTTTGCA-TTCAATCATAATCCTACACAGATGC-TCGCATA---------G---------TT-TGTGGTCAAAAATCAATAACAAACATTCAGGTGATTGTAACCGAGAAGAGAACAGCATGCCTCCAAAGAAAGTTTTAAAACTTTCTGATCCTTCCCAATGGAAAATAACGTTTTT
gi|2 : AGGGATGATTTTGGGCTG----A----GCCATACACTCATTAAAATTCCAGATGGCGCAC-----C--AAAAAGT-TTTGTGTGCTCCGTTTGGGCGCATTCAATTT-CAGTATCGCCCATACCTTTCAAAGG--TCTGGGCCA-GTCACCTTTCTTGTCGGTTAATTATGTC-TTTTAGTTAAATTCGGT-AATCCTTGGTGTTTT---TCATCAGTTA----------TCAGTGCAATT-GGTACCTCTCTGTGTTTTTCGCATTTTGCA-TTTAATCATGATCCTACACAGACGC-TTACATA---------GTTCTGCGCATT-TGTGGTC-AAAATCAATAACAAGCATTCAGGT
gi|3 : cAGGGATCATTTTGGGCTGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCAC-----T--AAAATGT-TTGGTGTGTGCCGAATTGGTGCATTCAATTT-CAGTATAATTCTTACCTTTCAAAGGTCTCAG---CATGTCACGTTTCTTGTTGGTTAATAACGTC-TTTTAGTTAAATTCATTAA-TCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTTGGTGTTTTTCGCATTTTGCATTTCAATCATGATCCTAAGAAGACGC-TTGCATA---------T---------TTCTGTG
gi|5 : tcAGGGATCATTTTGGGTCGCACCATTGAGCCAGACATCCATTAAAATTCCAGATGGCGCACTAAAAT--AAAAAGT-TTGGGATGCACCGAATTGGTGCATTCAATTC-CAGTATGGCCCATACCTTTCAAAGG--TCTGGGTCA-GTCACGTTTCTTGTTGGTTAATTACGTC-TTTTAGTTAAATTCGGTAA-TCCTCATTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGATTTTCACATTTTTCC-TTCAATCc
gi|11 : AGGGATCATTTTGGGTCACGCCGTTGCACTATACACCCATTAAAATTCCAGATGGCGCAC-----T--AAAAAGT-TTGGTGTGCACCGAACTGGCGCATTCAATTT-CAGT
gi|12 : cAGGGATCACTTTGGG--GC----TAGCACCATACGCCCATCAAAATTCCATATGGCCCAT-----TGGAAAAAGTATTGG---GCGCCAATTTGTCCCATTAAATTC-GGAGATGGCCCGTtacgtttcttgtcggttaa
gi|10 : AGGGATCATTTTGGGCCGCGCCATTGTGCC
gi|9 : tcAGGGATTCCTTTAGGTCGCGCCTTTGCGCCATTTGCACATTAAAATTTTATATGGTGCAA-----A--AACAAAT-GGGCCGTGCCCCGATCGGACCCATT-AATCCATAATTTGACCCATAG--TTTActgtttcttgtcggttaattacgtctttcagttaaattcggtaatcctcagtgtttttcgcatttttccttcaatcatgatcctaagcagac
gi|4 : GGAATCATTTTGGGACGCGCCATTGCGCCATACATCCTTTAAA-TTCCAGATGGCACAC-----T--AGAAAGT-TAGGTGTGCGCCGATTCT-CGCATTCAATTT-CAGTATGGCACATACCTTTCAAAGG--TCCAGGCCA-GTCATGTTTCTTGTTGGTTAATAATGTT-TTTTAGTTAAATTCGGTGA-TCTTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCATTT-GGTACCTCTTGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAACAGTTGC-TTGCATA---------G----------T-TGTGtctgacaaatgggtccgtcatgtagtatgtcattttt
gi|6 : ATACACCCATTAAAATTCCAGATGGCGTAC-----T--TAAAAGT-TTGGTGTGCACTGAATTGGCGCATTCAATTT-CAGTATGGCCCATACCTTTCAAAG-------------------TTTCTTGTCGGCTAATTACATC-TTTTAGTTAAATT-GGT-AATCCTCAGTGTTTTTTTTCGTCAGTTA----------TCAATGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACACATTGCATA-------------------TT-TCTGc
gi|8 : GATGGGGCAC-----T--AAAAAGT-TCAGTGTTCGCCGAATTGGCGCATTCAATTT-CAGTATAGCCCATACCTTTCAAAGG--TCCGTGCCA-GTCACGTTTCTTGTTGGTAAATTACGTT-TTTTAATTAAATTCAGT-AGTCC--AGTGTTTT---TCGTCAGTTA----------TCAGTATAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGTTCCTAc
gi|15 : GGGCCA-GTCACGTTTCTTGTCG----------TC-TTTTAGTTAAATTCGG
gi|7 : ccCGCGTTTCTTGTCGGTTAATAATATCTTTTAAGTTAAATTCGGTAA-TCCTC--TGTTTT---T-GTCAGTTA----------TCGGTGCAA------------------TTTTCGCATTTTGCA-TTCAATCATGATCCTACGCATATGC-CTGCATATTTCCGCACG---------TT-TGTGGTC-AAAATCAATAACAAGCATTCAGGTAATTGTAACCGAGAAGAGAACAGCTTG---CCAAAGACAGTTCTAAAATTTTCTGATCTT
gi|11 : ACGTTTCTTGTCGGTTAA
gi|10 : cagggatcattttgggtcacgccgttgcactatacacccattaaaattccagatggcgcactaaaaagtttggtgtgcaccgaactggcgcattcaatttcagttGTTTCTTGTCGGTTAATTACGTC-TTTCAGTTAAATTCGGTAA-TCCTCAGTGTTTT---TCG
gi|13 : tcagggatcattttgggccgcgccattgtgccctTAATTATGTC-TTTTAGTTAAATTCGGT-AATCCTCGGTGTTTT---TCGTCAGTTA----------TC--TGCAATT-GGTATCCCTTGGTGTTTTTCAcatttttccttcaatcatgatcctaagcagac
gi|10 : TGTTTC---TTGTCGGTTAATTACGTCTTTCAGTTAAATTCGGTAATCCTCAGTGTTTTTCGCATTTTTCC-TTCAATCATGATCCTAAGCAGA
gi|14 : tcagggatcattttgggccgcgccattgtgcccAAGTTCTAGAACTTTCTGATCCTTCCCAACGGAAGATAATGTTTTTc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GACGCTTGCATAGTTCTGCACGTTTGTGGTCAAAATTATA
Alignments
lowQualScore : 11111 1111 1111111111 666666666666666666666666666666 1 333
lowQualScore : 55 55 00000 4 4 4 5 0000 66 0 8888 0 0 3 1 666 7777777777 4 4 1 5 444444444444444444444444444444 0 4 555 1 0
lowQualScore : .. .. ..... . . . . .... .. . .... . . . . ... .......... . . . . .............................. . . ... . .
lowQualScore : 66 55 00000 0 9 0 0 6666 11 1 5555 4 3 6 4 444 5555555555 0 4 3 7 000000000000000000000000000000 0 0 000 0 7
consensus : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATA---------G---------TT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTGATTGTAACCGAGAAGAGAACAGCNTGCCTCCAAAGANAGTTCTAAAACTTTCTGATCCTTCCCAACGGAAGATAACGTTTTT
Reference ( family-1183 ) : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATA---------G---------TT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTAATTGTAACCGAGAAGAGAACAGCTTG---CCAAAGANAGTTCTAGAACTTTCTGATCCTTCCCAACGGAAGATAATGTTTTT
gi|1 : AGGGATCATTTTGGGCTGCACCATTGCGCCATACACCCGTTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGTGCTGATTTGGTGCATTCAATTT-CAGTATGGCCCATAA--T-T----CAAA--GGTCAGGACCA----GTCACGTTTCTTGTCGGTTAATTACATCTTAA-AGTTAAATTTGGT-ATCTTTGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTCTTTTTCACATTTTGCA-TTCAATCATAATCCTACACAGATGC-TCGCATA---------G---------TT---------TGTGGTCAAAAATCAATAACAAACATTCAGGTGATTGTAACCGAGAAGAGAACAGCATGCCTCCAAAGAAAGTTTTAAAACTTTCTGATCCTTCCCAATGGAAAATAACGTTTTT
gi|10 : AGGGATCATTTTGGGCCGCGCCATTGTGCC
gi|10 : tc--GGGCCGCGCCATTGTGCCCTGTTTCTTGTCGGTTAATTACGTCTTTC-AGTTAAATTCGGTAATCCTCAGTGTTTT---TCGctgtttcttgtcggttaattacgtctttcagttaaattcggtaatcctcagtgtttttcgcatttttccttcaatcatgatcctaagcagac
gi|10 : tcagggatcattttTGTTTC---TTGTCGGTTAATTACGTCTTTCAGTTAAATTCGGTAATCCTCAGTGTTTTTCGCATTTTTCC-TTCAATCATGATCCTAAGCAGACcatttttccttcaatcatgatcctaagcagac
gi|11 : tcagggatcattttgggccgcgccattgtgcccAGGGATCATTTTGGGTCACGCCGTTGCACTATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCACCGAACTGGCGCATTCAATTT-CAGT
gi|11 : cCA----GTTACGTTTCTTGTCGGTTAAtacgtttcttgtcggttaa
gi|12 : cagggatcattttgggtcacgccgttgcactatacacccattaaaattccagatggcgcactaaaaagtttggtgtgcaccgaactggcgcattcaatttAGGGATCACTTTGGG----GCTA--GCACCATACGCCCATCAAAATTCCATATGGCCCATTGGAAA-----AAGTATTGG---GCGCCAATTTGTCCCATTAAATTC-GGAGATGGCCCGT
gi|13 : TAATTATGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TC--TGCAATT-GGTATCCCTTGGTGTTTTTC
gi|14 : AGTTCTAGAACTTTCTGATCCTTCCCAACGGAAGATAATGTTTTTa
gi|15 : aCCGGGCCA----GTCACGTTTCTTGT----------CGTCTTTT-AGTTAAATTCGG
gi|16 : GACGC-TTGCATA---------G---------TTCTGCACGTTTGTGGTC-AAAATTA
gi|2 : AGGGATGATTTTGGGC--------TGAGCCATACACTCATTAAAATTCCAGATGGCGCACC--AAA-----AAGT-TTTGTGTGCTCCGTTTGGGCGCATTCAATTT-CAGTATCGCCCATACCTT-T----CAAA--GGTCTGGGCCA----GTCACCTTTCTTGTCGGTTAATTATGTCTTTT-AGTTAAATTCGGTAATCCTTGGTGTTTT---TCATCAGTTA----------TCAGTGCAATT-GGTACCTCTCTGTGTTTTTCGCATTTTGCA-TTTAATCATGATCCTACACAGACGC-TTACATA---------GTTCTGCGCATT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTta
gi|3 : cAGGGATCATTTTGGGCTGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----ATGT-TTGGTGTGTGCCGAATTGGTGCATTCAATTT-CAGTATAATTCTTACCTT-T----CAAA--GGTCTCAGCAT----GTCACGTTTCTTGTTGGTTAATAACGTCTTTT-AGTTAAATTCATTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTTGGTGTTTTTCGCATTTTGCATTTCAATCATGATCCTAAGAAGACGC-TTGCATA---------T---------TTC--------TGTG
gi|4 : tcGGAATCATTTTGGGACGCGCCATTGCGCCATACATCCTTTAAA-TTCCAGATGGCACACT--AGA-----AAGT-TAGGTGTGCGCCGA-TTCTCGCATTCAATTT-CAGTATGGCACATACCTT-T----CAAA--GGTCCAGGCCA----GTCATGTTTCTTGTTGGTTAATAATGTTTTTT-AGTTAAATTCGGTGATCTTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCATTT-GGTACCTCTTGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAACAGTTGC-TTGCATA---------G----------T---------TGTGc
gi|5 : AGGGATCATTTTGGGTCGCACCATTGAGCCAGACATCCATTAAAATTCCAGATGGCGCACT--AAAATAAAAAGT-TTGGGATGCACCGAATTGGTGCATTCAATTC-CAGTATGGCCCATACCTT-T----CAAA--GGTCTGGGTCA----GTCACGTTTCTTGTTGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCATTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGATTTTCACATTTTTCC-TTCAATCc
gi|6 : ATACACCCATTAAAATTCCAGATGGCGTACT--TAA-----AAGT-TTGGTGTGCACTGAATTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--G--------------------TTTCTTGTCGGCTAATTACATCTTTT-AGTTAAATT-GGTAATCCTCAGTGTTTTTTTTCGTCAGTTA----------TCAATGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACACATTGCATA-------------------TT---------TCTG
gi|7 : CGCGTTTCTTGTCGGTTAATAATATCTTTTAAGTTAAATTCGGTAATCCTC--TGTTTT---T-GTCAGTTA----------TCGGTGCAA------------------TTTTCGCATTTTGCA-TTCAATCATGATCCTACGCATATGC-CTGCATATTTCCGCACG---------TT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTAATTGTAACCGAGAAGAGAACAGCTTG---CCAAAGACAGTTCTAAAATTTTCTGATCTTc
gi|8 : GATGGGGCACT--AAA-----AAGT-TCAGTGTTCGCCGAATTGGCGCATTCAATTT-CAGTATAGCCCATACCTT-T----CAAA--GGTCCGTGCCA----GTCACGTTTCTTGTTGGTAAATTACGTTTTTT-AATTAAATTCAGTAGTC--CAGTGTTTT---TCGTCAGTTA----------TCAGTATAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGTTCCTA
gi|9 : AGGGATTCCTTTAGGTCGCGCCTTTGCGCCATTTGCACATTAAAATTTTATATGGTGCAAA--AAC-----AAAT-GGGCCGTGCCCCGATCGGACCCATT-AATCCATAATTTGACCCATAGTTTATCTGACAAATGGGTCCG
Alignments
lowQualScore : 11111 1111 1111111111 666666666666666666666666666666 1 222
lowQualScore : 55 55 00000 4 4 4 5 0000 66 0 8888 0 0 3 1 666 7777777777 4 4 1 5 444444444444444444444444444444 0 1 000 1
lowQualScore : .. .. ..... . . . . .... .. . .... . . . . ... .......... . . . . .............................. . . ... .
lowQualScore : 66 55 00000 0 9 0 0 6666 11 1 5555 4 3 6 4 444 5555555555 0 4 3 7 000000000000000000000000000000 0 0 555 0
consensus : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATA---------G---------TT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTGATTGTAACCGAGAAGAGAACAGCNTGCCTCCAAAGANAGTTCTAAAACTTTCTGATCCTTCCCAACGGAAGATAACGTTTTT
Reference ( family-1183 ) : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATA---------G---------TT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTGATTGTAACCGAGAAGAGAACAGCNTGCCTCCAAAGANAGTTCTAAAACTTTCTGATCCTTCCCAACGGAAGATAACGTTTTT
gi|1 : AGGGATCATTTTGGGCTGCACCATTGCGCCATACACCCGTTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGTGCTGATTTGGTGCATTCAATTT-CAGTATGGCCCATAA--T-T----CAAA--GGTCAGGACCA----GTCACGTTTCTTGTCGGTTAATTACATCTTAA-AGTTAAATTTGGT-ATCTTTGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTCTTTTTCACATTTTGCA-TTCAATCATAATCCTACACAGATGC-TCGCATA---------G---------TT---------TGTGGTCAAAAATCAATAACAAACATTCAGGTGATTGTAACCGAGAAGAGAACAGCATGCCTCCAAAGAAAGTTTTAAAACTTTCTGATCCTTCCCAATGGAAAATAACGTTTTT
gi|10 : AGGGATCATTTTGGGCCGCGCCATTGTGCC
gi|10 : tc--GGGCCGCGCCATTGTGCCCTGTTTCTTGTCGGTTAATTACGTCTTTC-AGTTAAATTCGGTAATCCTCAGTGTTTT---TCGctgtttcttgtcggttaattacgtctttcagttaaattcggtaatcctcagtgtttttcgcatttttccttcaatcatgatcctaagcagac
gi|10 : tcagggatcattttTGTTTC---TTGTCGGTTAATTACGTCTTTCAGTTAAATTCGGTAATCCTCAGTGTTTTTCGCATTTTTCC-TTCAATCATGATCCTAAGCAGACcatttttccttcaatcatgatcctaagcagac
gi|11 : tcagggatcattttgggccgcgccattgtgcccAGGGATCATTTTGGGTCACGCCGTTGCACTATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCACCGAACTGGCGCATTCAATTT-CAGT
gi|11 : cCA----GTTACGTTTCTTGTCGGTTAAtacgtttcttgtcggttaa
gi|12 : cagggatcattttgggtcacgccgttgcactatacacccattaaaattccagatggcgcactaaaaagtttggtgtgcaccgaactggcgcattcaatttAGGGATCACTTTGGG----GCTA--GCACCATACGCCCATCAAAATTCCATATGGCCCATTGGAAA-----AAGTATTGG---GCGCCAATTTGTCCCATTAAATTC-GGAGATGGCCCGT
gi|13 : TAATTATGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TC--TGCAATT-GGTATCCCTTGGTGTTTTTC
gi|14 : AGTTCTAGAACTTTCTGATCCTTCCCAACGGAAGATAATGTTTTTa
gi|15 : aCCGGGCCA----GTCACGTTTCTTGT----------CGTCTTTT-AGTTAAATTCGG
gi|16 : GACGC-TTGCATA---------G---------TTCTGCACGTTTGTGGTC-AAAATTA
gi|2 : AGGGATGATTTTGGGC--------TGAGCCATACACTCATTAAAATTCCAGATGGCGCACC--AAA-----AAGT-TTTGTGTGCTCCGTTTGGGCGCATTCAATTT-CAGTATCGCCCATACCTT-T----CAAA--GGTCTGGGCCA----GTCACCTTTCTTGTCGGTTAATTATGTCTTTT-AGTTAAATTCGGTAATCCTTGGTGTTTT---TCATCAGTTA----------TCAGTGCAATT-GGTACCTCTCTGTGTTTTTCGCATTTTGCA-TTTAATCATGATCCTACACAGACGC-TTACATA---------GTTCTGCGCATT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTta
gi|3 : cAGGGATCATTTTGGGCTGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----ATGT-TTGGTGTGTGCCGAATTGGTGCATTCAATTT-CAGTATAATTCTTACCTT-T----CAAA--GGTCTCAGCAT----GTCACGTTTCTTGTTGGTTAATAACGTCTTTT-AGTTAAATTCATTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTTGGTGTTTTTCGCATTTTGCATTTCAATCATGATCCTAAGAAGACGC-TTGCATA---------T---------TTC--------TGTG
gi|4 : tcGGAATCATTTTGGGACGCGCCATTGCGCCATACATCCTTTAAA-TTCCAGATGGCACACT--AGA-----AAGT-TAGGTGTGCGCCGA-TTCTCGCATTCAATTT-CAGTATGGCACATACCTT-T----CAAA--GGTCCAGGCCA----GTCATGTTTCTTGTTGGTTAATAATGTTTTTT-AGTTAAATTCGGTGATCTTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCATTT-GGTACCTCTTGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAACAGTTGC-TTGCATA---------G----------T---------TGTGc
gi|5 : AGGGATCATTTTGGGTCGCACCATTGAGCCAGACATCCATTAAAATTCCAGATGGCGCACT--AAAATAAAAAGT-TTGGGATGCACCGAATTGGTGCATTCAATTC-CAGTATGGCCCATACCTT-T----CAAA--GGTCTGGGTCA----GTCACGTTTCTTGTTGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCATTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGATTTTCACATTTTTCC-TTCAATCc
gi|6 : ATACACCCATTAAAATTCCAGATGGCGTACT--TAA-----AAGT-TTGGTGTGCACTGAATTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--G--------------------TTTCTTGTCGGCTAATTACATCTTTT-AGTTAAATT-GGTAATCCTCAGTGTTTTTTTTCGTCAGTTA----------TCAATGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACACATTGCATA-------------------TT---------TCTG
gi|7 : CGCGTTTCTTGTCGGTTAATAATATCTTTTAAGTTAAATTCGGTAATCCTC--TGTTTT---T-GTCAGTTA----------TCGGTGCAA------------------TTTTCGCATTTTGCA-TTCAATCATGATCCTACGCATATGC-CTGCATATTTCCGCACG---------TT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTAATTGTAACCGAGAAGAGAACAGCTTG---CCAAAGACAGTTCTAAAATTTTCTGATCTTc
gi|8 : GATGGGGCACT--AAA-----AAGT-TCAGTGTTCGCCGAATTGGCGCATTCAATTT-CAGTATAGCCCATACCTT-T----CAAA--GGTCCGTGCCA----GTCACGTTTCTTGTTGGTAAATTACGTTTTTT-AATTAAATTCAGTAGTC--CAGTGTTTT---TCGTCAGTTA----------TCAGTATAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGTTCCTA
gi|9 : AGGGATTCCTTTAGGTCGCGCCTTTGCGCCATTTGCACATTAAAATTTTATATGGTGCAAA--AAC-----AAAT-GGGCCGTGCCCCGATCGGACCCATT-AATCCATAATTTGACCCATAGTTTATCTGACAAATGGGTCCG
blockSeqs : CC GG ATAAA A A A A CTGA TG TTGT A A TTT ATTACGTCTT C T A A GTTCTGCACGTT . T . C
blockSeqs : TC . . . T . . . . . . G . . . . C . GTTCTGCGCATT .
blockSeqs : CT . . . T . . . . . . G . . . . A . TTTCCGCACGTT .
blockSeqs : AC . . . A . . . . . . G . . . . A . TTTC
blockSeqs : TC . . . A . . . . . . G . . . . A . GT
blockSeqs : TC . . . A . . . . . . A . . . . C . TT
blockSeqs : C . . . A . . . . . . A . . . .
blockSeqs : . . . . T . . . . A . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : NTTCGCCTT*********************
originalCons : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATA---------G---------TT---------TGTGGTC-AAAATCAATAACAAGCATTCAGGTGATTGTAACCGAGAAGAGAACAGCNTGCCTCCAAAGANAGTTCTAAAACTTTCTGATCCTTCCCAACGGAAGATAACGTTTTT
finalCons : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATANTTCGCCTT---------------------TGTGGTC-AAAATCAATAACAAGCATTCAGGTGATTGTAACCGAGAAGAGAACAGCNTGCCTCCAAAGANAGTTCTAAAACTTTCTGATCCTTCCCAACGGAAGATAACGTTTTT
Alignments
lowQualScore : 11111 1111 1111111111 5555555555 1 222
lowQualScore : 55 55 00000 4 4 4 5 0000 66 0 8888 0 0 3 1 666 7777777777 4 4 1 5 1 1111111111 0 1 000 1
lowQualScore : .. .. ..... . . . . .... .. . .... . . . . ... .......... . . . . . .......... . . ... .
lowQualScore : 66 55 00000 0 9 0 0 6666 11 1 5555 4 3 6 4 444 5555555555 0 4 3 7 0 5555555555 0 0 555 0
consensus : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATAGTT---C-GCACGTTTGTGGTC-AAAATCAATAACAAGCATTCAGGTGATTGTAACCGAGAAGAGAACAGCNTGCCTCCAAAGANAGTTCTAAAACTTTCTGATCCTTCCCAACGGAAGATAACGTTTTT
Reference ( family-1183 ) : AGGGATCATTTTGGGCCGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCGCCGANTTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--GGTCCGGGCCA----GTCACGTTTCTTGTCGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACGC-TTGCATANTT---C-GC-C-TTTGTGGTC-AAAATCAATAACAAGCATTCAGGTGATTGTAACCGAGAAGAGAACAGCNTGCCTCCAAAGANAGTTCTAAAACTTTCTGATCCTTCCCAACGGAAGATAACGTTTTT
gi|1 : AGGGATCATTTTGGGCTGCACCATTGCGCCATACACCCGTTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGTGCTGATTTGGTGCATTCAATTT-CAGTATGGCCCATAA--T-T----CAAA--GGTCAGGACCA----GTCACGTTTCTTGTCGGTTAATTACATCTTAA-AGTTAAATTTGGT-ATCTTTGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTCTTTTTCACATTTTGCA-TTCAATCATAATCCTACACAGATGC-TCGCATAG------------TTTGTGGTCAAAAATCAATAACAAACATTCAGGTGATTGTAACCGAGAAGAGAACAGCATGCCTCCAAAGAAAGTTTTAAAACTTTCTGATCCTTCCCAATGGAAAATAACGTTTTT
gi|10 : AGGGATCATTTTGGGCCGCGCCATTGTGCC
gi|10 : tc--GGGCCGCGCCATTGTGCCCTGTTTCTTGTCGGTTAATTACGTCTTTC-AGTTAAATTCGGTAATCCTCAGTGTTTT---TCGctgtttcttgtcggttaattacgtctttcagttaaattcggtaatcctcagtgtttttcgcatttttccttcaatcatgatcctaagcagac
gi|10 : tcagggatcattttTGTTTC---TTGTCGGTTAATTACGTCTTTCAGTTAAATTCGGTAATCCTCAGTGTTTTTCGCATTTTTCC-TTCAATCATGATCCTAAGCAGACcatttttccttcaatcatgatcctaagcagac
gi|11 : tcagggatcattttgggccgcgccattgtgcccAGGGATCATTTTGGGTCACGCCGTTGCACTATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----AAGT-TTGGTGTGCACCGAACTGGCGCATTCAATTT-CAGT
gi|11 : cCA----GTTACGTTTCTTGTCGGTTAAtacgtttcttgtcggttaa
gi|12 : cagggatcattttgggtcacgccgttgcactatacacccattaaaattccagatggcgcactaaaaagtttggtgtgcaccgaactggcgcattcaatttAGGGATCACTTTGGG----GCTA--GCACCATACGCCCATCAAAATTCCATATGGCCCATTGGAAA-----AAGTATTGG---GCGCCAATTTGTCCCATTAAATTC-GGAGATGGCCCGT
gi|13 : TAATTATGTCTTTT-AGTTAAATTCGGTAATCCTCGGTGTTTT---TCGTCAGTTA----------TC--TGCAATT-GGTATCCCTTGGTGTTTTTC
gi|14 : AGTTCTAGAACTTTCTGATCCTTCCCAACGGAAGATAATGTTTTTa
gi|15 : aCCGGGCCA----GTCACGTTTCTTGT----------CGTCTTTT-AGTTAAATTCGG
gi|16 : GACGC-TTGCATAGTT---CTGCACGTTTGTGGTC-AAAATTA
gi|2 : AGGGATGATTTTGGGC--------TGAGCCATACACTCATTAAAATTCCAGATGGCGCACC--AAA-----AAGT-TTTGTGTGCTCCGTTTGGGCGCATTCAATTT-CAGTATCGCCCATACCTT-T----CAAA--GGTCTGGGCCA----GTCACCTTTCTTGTCGGTTAATTATGTCTTTT-AGTTAAATTCGGTAATCCTTGGTGTTTT---TCATCAGTTA----------TCAGTGCAATT-GGTACCTCTCTGTGTTTTTCGCATTTTGCA-TTTAATCATGATCCTACACAGACGC-TTACATAGTTCTGC-GC-A-TTTGTGGTC-AAAATCAATAACAAGCATTCAGGTta
gi|3 : cAGGGATCATTTTGGGCTGCGCCATTGCGCCATACACCCATTAAAATTCCAGATGGCGCACT--AAA-----ATGT-TTGGTGTGTGCCGAATTGGTGCATTCAATTT-CAGTATAATTCTTACCTT-T----CAAA--GGTCTCAGCAT----GTCACGTTTCTTGTTGGTTAATAACGTCTTTT-AGTTAAATTCATTAATCCTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTTGGTGTTTTTCGCATTTTGCATTTCAATCATGATCCTAAGAAGACGC-TTGCATATTT---C-
gi|4 : tcGGAATCATTTTGGGACGCGCCATTGCGCCATACATCCTTTAAA-TTCCAGATGGCACACT--AGA-----AAGT-TAGGTGTGCGCCGA-TTCTCGCATTCAATTT-CAGTATGGCACATACCTT-T----CAAA--GGTCCAGGCCA----GTCATGTTTCTTGTTGGTTAATAATGTTTTTT-AGTTAAATTCGGTGATCTTCGGTGTTTT---TCGTCAGTTA----------TCAGTGCATTT-GGTACCTCTTGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAACAGTTGC-TTGCATAGTT---tgtgc
gi|5 : AGGGATCATTTTGGGTCGCACCATTGAGCCAGACATCCATTAAAATTCCAGATGGCGCACT--AAAATAAAAAGT-TTGGGATGCACCGAATTGGTGCATTCAATTC-CAGTATGGCCCATACCTT-T----CAAA--GGTCTGGGTCA----GTCACGTTTCTTGTTGGTTAATTACGTCTTTT-AGTTAAATTCGGTAATCCTCATTGTTTT---TCGTCAGTTA----------TCAGTGCAATT-GGTACCTCTCGGTGATTTTCACATTTTTCC-TTCAATCgtgc
gi|6 : ATACACCCATTAAAATTCCAGATGGCGTACT--TAA-----AAGT-TTGGTGTGCACTGAATTGGCGCATTCAATTT-CAGTATGGCCCATACCTT-T----CAAA--G--------------------TTTCTTGTCGGCTAATTACATCTTTT-AGTTAAATT-GGTAATCCTCAGTGTTTTTTTTCGTCAGTTA----------TCAATGCAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGATCCTAAGCAGACACATTGCATATTT---C-
gi|7 : CGCGTTTCTTGTCGGTTAATAATATCTTTTAAGTTAAATTCGGTAATCCTC--TGTTTT---T-GTCAGTTA----------TCGGTGCAA------------------TTTTCGCATTTTGCA-TTCAATCATGATCCTACGCATATGC-CTGCATATTTC--C-GCACGTTTGTGGTC-AAAATCAATAACAAGCATTCAGGTAATTGTAACCGAGAAGAGAACAGCTTG---CCAAAGACAGTTCTAAAATTTTCTGATCTTtgc
gi|8 : GATGGGGCACT--AAA-----AAGT-TCAGTGTTCGCCGAATTGGCGCATTCAATTT-CAGTATAGCCCATACCTT-T----CAAA--GGTCCGTGCCA----GTCACGTTTCTTGTTGGTAAATTACGTTTTTT-AATTAAATTCAGTAGTC--CAGTGTTTT---TCGTCAGTTA----------TCAGTATAATT-GGTACCTCTCGGTGTTTTTCGCATTTTGCA-TTCAATCATGTTCCTA
gi|9 : AGGGATTCCTTTAGGTCGCGCCTTTGCGCCATTTGCACATTAAAATTTTATATGGTGCAAA--AAC-----AAAT-GGGCCGTGCCCCGATCGGACCCATT-AATCCATAATTTGACCCATAGTTTATCTGACAAATGGGTCCG