lowQualScore : 111111111111111 33333333333333333333
lowQualScore : 1 111 11111 11 44444444 11 11 22 1 33333 111 111 33333333333 2222 1 11 555555555555555 2 1 1 1 22222222222222222222 1 1 33 11111
lowQualScore : 6 0 0 0 777 55555 4 7777 7 6 88 88888888 77 0 2 44 00 2 33333 1 444 9 777 0 777 22222222222 0 88 1 8888 3 6 55 7 888888888888888 4 4 0 6 4 88 3 3 4 6 7 6 5 6 7 6 55555555555555555555 5 6 6 5 44 6 4 00000 3
lowQualScore : . . . . ... ..... . .... . . .. ........ .. . . .. .. . ..... . ... . ... . ... ........... . .. . .... . . .. . ............... . . . . . .. . . . . . . . . . . .................... . . . . .. . . ..... .
lowQualScore : 5 8 2 0 555 11111 7 7777 3 7 00 33333333 00 7 5 22 33 3 22222 4 000 6 555 2 555 00000000000 8 44 0 3333 7 0 00 3 555555555555555 0 0 0 0 0 00 0 0 0 0 0 0 0 0 0 0 00000000000000000000 0 0 0 0 00 0 0 00000 9
consensus : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCNCCTGGGCAAGCTCCAGCCTTC-NAAGTGGGTCA--------CGGTC-NCTTCACNTTTACATGGAGA-GATTTTTAACCTATCGTCGTTTTTATGCTTTTAACGTGGTGTTAAAAAGGGTCGTTTT-G-ATAATCAACAAGAATCGGC---ATGCTTCAATAGT---ACTACA--T-CTNCGAGAA-CATCTTTCGACGGGA----ACCTNC-TATCAACAGAATCAACTTTGC---GTAATCGTCTTCAAGAANCANCTTTTAANCNNCNTNTCTACNGGAATCTTCTAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTTACGCCATGCTTTAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAACAG--------------------CATGGAAGATGGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTTCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCATCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
Reference ( gi|2 ) : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACGAATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTAA-ATAATCAACAAGAATCAGC---ATGCTACAATAGT---ACTACA--T-CTCCAAGAAACATCTTTTGACGGGA----ACCTCCATATCATCAGAATCAACTTAGCCAAAAAATGGACTTCAAGAATCATC-TCTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGCAATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCATCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATTGAACATCATATCGCCAAGAACCAACTTAGAGAATAATCATCTTATCCAGCCAGTGGTGCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCTACTTATCCTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACACTTAA
gi|1 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTTCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACCTATCATCGTTTTTATGTTTTTAACGTGGTGTTGAAAAGGGTCGTTTTGATAAAAACTACAAGAATCAGC---ATGCTTCAATAGT---ACTACAGCTACTCCAAGAAACATCTTTTGACGGGA----ACCTCCATATCCACAGAATCAACTTTGT-----------CTTCAAGAATCATCTTTTAAACAACTTATCTACTAGAATCTTCTAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTTACGCCATGCTTTAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAACAG--------------------CATGGAAGATGGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTTCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCATCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTAAA
gi|5 : aCTCTTCAAGC--------A-GC---AGGACG----TCCACTGGATA-GCCCAAGCCTTC-AAAGTGGGTCAGATTTTAGTGATCGTCTTCACTTCTACATGTAGACGATTTTTcagacagacattttgttatcttcctcattaattgcacgatacattaaatacagtcaagctacagtagttatttgactcggccagaattcaatttccatttgagaacacatttatcatatagacacttccaggtagatatacgataatataatactaattatactactttatacaagtccagttaacagtaggcctaccaatatgtcagtccggagccgaaatcgcgtggttacaagtccaagacgatacagagaaaacacgcatacggatatttacatatatatattatgtatttagagaattgtataaa
gi|20 : acaCTCTTCAAGCGGCTGTCGA-GC---AGGACGGAta
gi|9 : ccCTCTTCAAACAGCTGCCAATGCTGAAAGACCTATG-CACC----CAAG-TCCAGTCTTCGCAAGTGGGTCA--------CTGTC-ACTTC
gi|4 : cgTTTACATGGAGT-GATTTTTAACCTATCATCGATTTTATG-TTTTAACATGGTGATAAAAGGGGTCGTTTT-G-GTATTCAACAAGAATAGGCATTATACTGCAGTAATATAACTACA--T-TGGCGAGAAc
gi|8 : TACATGGAGA-GATTATTAACAAATCGTCGTTTTTATGCTTTTAACGTGGCGTTAGAAAGGGTTGTTTT---ATAATCAGCA
gi|10 : TTAATGTGGTGTTAAAAAAGGTCGTTT-AG-ATATTCAACAAGAATCAGC---ATGCTACAta
gi|3 : aacctactaaacatttcaAGGGTTGTTTTTA--TAATCACCAAGAAACAGC---ATGCTTCTACAGT---AC------T-CT---------ATCTTTCGACGGGA----ACTGGC-TTTCAT-AGG---AACT--GC---GTAATCGTCTTCAAGAAACAAC-TTTAATCTTCGTCTCTACAGGAAg
gi|11 : AGAATCGGC---ATGCCTC-----T---ACTGTA----CTTCAAGAGTCATCTTTCGATGGGATTTTACCTTCTTATCAACTAAATC
gi|12 : TTATCTTGATTGCCAAAAAGTCTAGATTTAAG-TT-----CGATAGTAAACAAACGCTTAA
gi|6 : tGCTCGCCAAAATGTCTAGAGCAAAGATG-----CGAGTGTAAA
gi|17 : CTCGCCATAAAGCCCAGAGCTAAG-TG-----CGAGGGTAAATAAAtatatataagtatagttgttttactttttcattcggattgaacagatacgatt
gi|18 : CCCAAAAGCTTAGAGCCAAG-TG-----CGAGGGTAAAGAAA
gi|15 : GCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACGCTTA
gi|19 : GCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTTtacata
gi|14 : GCCTAGAGCTAAG-AG-----TGAGGGTAAAGAAACACTTA
gi|13 : GCCTAGAGCTAAG-TGCAGTGCGAGGGTAAATAAACACTTAAtacatac
gi|16 : CCTAGAGCTAAG-TG-----CGAGGGTGAAGAAACGCTTAacatac
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): AATAACCTTCAATCTTCAATATCAAGTGTCAGCCATATGTTTACACATTTAAATACTGACAAATTAACATTTGGGTAGTTTTCAGTTA
Alignments
lowQualScore : 11111111111111111111
lowQualScore : 111 11 33333333 11 11 1 11 111 111 333333333333333 2222 3 5555555555555 2 66666666666666666666
lowQualScore : 3 8 444 3 3 1 3 0 3 2 11 66666666 11 1 00 66 2 0 11 99 0 111 3 3 444 3 111111111111111 1111 1 0 9 3 0000000000000 1 1 3 1 22 1 1 11 4 2 4 22222222222222222222 2 3 88 3 99999 1
lowQualScore : . . ... . . . . . . . .. ........ .. . .. .. . . .. .. . ... . . ... . ............... .... . . . . ............. . . . . .. . . .. . . . .................... . . .. . ..... .
lowQualScore : 2 0 000 2 2 0 2 2 2 5 00 22222222 00 0 22 55 0 5 88 22 7 777 7 5 000 8 444444444444444 2222 0 0 8 2 0000000000000 0 0 7 0 00 0 0 77 0 5 0 55555555555555555555 5 0 00 6 11111 0
consensus : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTCN-AAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTT-GATAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTACA--T-CTCCAAG-AA-CATCTTTCGACGGGA----ACCTCCATATCAACAGAATCAACTT-GC---G-AAT-GTCTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
Reference ( family-1146 ) : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCNCCTGGGCAAGCTCCAGCCTTCN-AAGTGGGTCA--------CGGTC-NCTTCACNTTTACATGGAGA-GATTTTTAACCTATCGTCGTTTTTATGCTTTTAACGTGGTGTTAAAAAGGGTCGTTTT-GATAATCA--ACAAGAATCGGC---ATGCTTCAATAGT---ACTACA--T-CTNCGAG-AA-CATCTTTCGACGGGA----ACCTNC-TATCAACAGAATCAACTTTGC---GTAATCGTCTTCAAGAANCANCTTTTAANCNNCNTNTCTACNGGAATCTTCTAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTTACGCCATGCTTTAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAACAG--------------------CATGGAAGATGGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTTCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCATCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
gi|1 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTTCAGCCTTCT-AAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACCTATCATCGTTTTTATGTTTTTAACGTGGTGTTGAAAAGGGTCGTTTT-GATAAAAACTACAAGAATCAGC---ATGCTTCAATAGT---ACTACAGCTACTCCAAG-AAACATCTTTTGACGGGA----ACCTCCATATCCACAGAATCAACTTTG-----------TCTTCAAGAATCATCTTTTAAACAACTTATCTACTAGAATCTTCTAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTTACGCCATGCTTTAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAACAG--------------------CATGGAAGATGGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTTCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCATCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTAAA
gi|10 : aTTAATGTGGTGTTAAAAAAGGTCGTTTA-GATATTCA--ACAAGAATCAGC---ATGCTACAcagacagacattttgttatcttcctcattaattgcacgatacattaaatacagtcaagctacagtagttatttgactcggccagaattcaatttccatttgagaacacatttatcatatagacacttccaggtagatatacgataatataatactaattatactactttatacaagtccagttaacagtaggcctaccaatatgtcagtccggagccgaaatcgcgtggttacaagtccaagacgatacagagaaaacacgcatacggatatttacatatatatattatgtatttagagaattgtataaa
gi|11 : aacctactaaacatttcaAGAATCGGC---ATGCCTC-----T---ACTGTA----CTTCAAG-AGTCATCTTTCGATGGGATTTTACCTTCTTATCAACTAAATCg
gi|12 : TTATCTTGATTGCCAAAAAGTCTAGATTTAAG-TT-----CGATAGTAAACAAACGCTTAA
gi|13 : tGCCTAGAGCTAAG-TGCAGTGCGAGGGTAAATAAACACTTAA
gi|14 : GCCTAGAGCTAAG-AG-----TGAGGGTAAAGAAACACTTAacatac
gi|15 : GCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACGCTTAtacatac
gi|16 : CCTAGAGCTAAG-TG-----CGAGGGTGAAGAAACGCTTAtacata
gi|17 : CTCGCCATAAAGCCCAGAGCTAAG-TG-----CGAGGGTAAATAAAtacata
gi|18 : CCCAAAAGCTTAGAGCCAAG-TG-----CGAGGGTAAAGAAA
gi|19 : GCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTT
gi|2 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTCT-AAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACGAATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTAAATAATCA--ACAAGAATCAGC---ATGCTACAATAGT---ACTACA--T-CTCCAAGAAA-CATCTTTTGACGGGA----ACCTCCATATCATCAGAATCAACTTAGCCAAAAAATGGACTTCAAGAATCATC-TCTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGCAATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCATCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATTGAACATCATATCGCCAAGAACCAACTTAGAGAATAATCATCTTATCCAGCCAGTGGTGCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCTACTTATCCTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACACTTAA
gi|20 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGA
gi|3 : ccAGGGTTGTTTT-TATAATCA--CCAAGAAACAGC---ATGCTTCTACAGT---ACT-------CT----------ATCTTTCGACGGGA----ACTGGC-TTTCA-TAGGA---ACT--GC---GTAATCGTCTTCAAGAAACAAC-TTTAATCTTCGTCTCTACAGGAA
gi|4 : TTTACATGGAGT-GATTTTTAACCTATCATCGATTTTATG-TTTTAACATGGTGATAAAAGGGGTCGTTTT-GGTATTCA--ACAAGAATAGGCATTATACTGCAGTAATATAACTACA--T-TGGCGAG-AA-
gi|5 : CTCTTCAAGC--------A-GC---A----GGACGTCCACTGGAT-AGCCCAAGCCTTCA-AAGTGGGTCAGATTTTAGTGATCGTCTTCACTTCTACATGTAGACGATTTTT
gi|6 : acaGCTCGCCAAAATGTCTAGAGCAAAGATG-----CGAGTGTAAATta
gi|8 : TACATGGAGA-GATTATTAACAAATCGTCGTTTTTATGCTTTTAACGTGGCGTTAGAAAGGGTTGTTTT--ATAATCA--GCAtatataagtatagttgttttactttttcattcggattgaacagatacgatt
gi|9 : CTCTTCAAACAGCTGCCAATGCTGAAAGACCTATG-CACC----CAAG-TCCAGTCTTCGCAAGTGGGTCA--------CTGTC-ACTTCta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAACCTTCAATCTTCAATATCAAGTGTCAGCCATATGTTTACACATTTAAATACTGACAAATTAACATTTGGGTAGTTTTCAGTTA
Alignments
lowQualScore : 111 11 33333333 11 111 111 222222222222222 2222 2222 11 6666666666666666 1 66666666666666666666
lowQualScore : 3 8 444 3 3 1 3 0 3 2 11 66666666 00 99 22 0 5 6 99 0 111 1 3 444 3 555555555555555 1111 1111 00 8888888888888888 3 1 1 1 99999999999999999999 1 1 22 3 99999 1
lowQualScore : . . ... . . . . . . . .. ........ .. .. .. . . . .. . ... . . ... . ............... .... .... .. ................ . . . . .................... . . .. . ..... .
lowQualScore : 2 0 000 2 2 2 2 2 2 5 00 22222222 22 44 00 8 2 7 22 7 777 0 5 000 8 000000000000000 2222 2222 00 3333333333333333 3 0 0 0 55555555555555555555 0 0 00 6 11111 0
consensus : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTACA--T-CTCCAAG-AA-CATCTTTCGACGGGA----ACC----TCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
Reference ( family-1146 ) : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-NAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTACA--T-CTCCAAG-AA-CATCTTTCGACGGGA----ACC----TCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
gi|1 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTTCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACCTATCATCGTTTTTATGTTTTTAACGTGGTGTTGAAAAGGGTCGTTTTGA-TAAAAACTACAAGAATCAGC---ATGCTTCAATAGT---ACTACAGCTACTCCAAGAAA-CATCTTTTGACGGGA----ACC----TCCATATCCACAGAATCAACTT-----------T-GT-CTTCAAGAATCATCTTTTAAACAACTTATCTACTAGAATCTTCTAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTTACGCCATGCTTTAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAACAG--------------------CATGGAAGATGGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTTCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCATCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTAAA
gi|10 : aTTAATGTGGTGTTAAAAAAGGTCGTTTAGA-TATTCA--ACAAGAATCAGC---ATGCTACAcagacagacattttgttatcttcctcattaattgcacgatacattaaatacagtcaagctacagtagttatttgactcggccagaattcaatttccatttgagaacacatttatcatatagacacttccaggtagatatacgataatataatactaattatactactttatacaagtccagttaacagtaggcctaccaatatgtcagtccggagccgaaatcgcgtggttacaagtccaagacgatacagagaaaacacgcatacggatatttacatatatatattatgtatttagagaattgtataaa
gi|11 : aacctactaaacatttcaAGAATCGGC---ATGCCTC-----T---ACTGTA----CTTCAAG-AGTCATCTTTCGATGGGATTTTACC----TTCTTATCAACTAAATCg
gi|12 : TTATCTTGATTGCCAAAAAGTCTAGATTTAAG-TT-----CGATAGTAAACAAACGCTTAA
gi|13 : tGCCTAGAGCTAAG-TGCAGTGCGAGGGTAAATAAACACTTAA
gi|14 : GCCTAGAGCTAAG-AG-----TGAGGGTAAAGAAACACTTAacatac
gi|15 : GCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACGCTTAtacatac
gi|16 : CCTAGAGCTAAG-TG-----CGAGGGTGAAGAAACGCTTAtacata
gi|17 : CTCGCCATAAAGCCCAGAGCTAAG-TG-----CGAGGGTAAATAAAtacata
gi|18 : CCCAAAAGCTTAGAGCCAAG-TG-----CGAGGGTAAAGAAA
gi|19 : GCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTT
gi|2 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACGAATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTAAATAATCA--ACAAGAATCAGC---ATGCTACAATAGT---ACTACA--T-CTCCAAG-AAACATCTTTTGACGGGA----ACC----TCCATATCATCAGAATCAACTTAGCCAAAA-AAT-GGACTTCAAGAATCATC-TCTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGCAATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCATCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATTGAACATCATATCGCCAAGAACCAACTTAGAGAATAATCATCTTATCCAGCCAGTGGTGCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCTACTTATCCTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACACTTAA
gi|20 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGA
gi|3 : ccAGGGTTGTTTTTA-TAATCA--CCAAGAAACAGC---ATGCTTCTACAGT---ACT-------CT----------ATCTTTCGACGGGA----ACTGGCTTTCATAGGAAC----------T-GC----GTAATCGT-CTTCAAGAAACAAC-TTTAATCTTCGTCTCTACAGGAA
gi|4 : TTTACATGGAGT-GATTTTTAACCTATCATCGATTTTATGTTTT-AACATGGTGATAAAAGGGGTCGTTTTGG-TATTCA--ACAAGAATAGGCATTATACTGCAGTAATATAACTACA--T-TGGCGAG-AA-
gi|5 : CTCTTCAAGC--------A-GC---A----GGACGTCCACTGGAT-AGCCCAAGCCTTC-AAAGTGGGTCAGATTTTAGTGATCGTCTTCACTTCTACATGTAGACGATTTTT
gi|6 : acaGCTCGCCAAAATGTCTAGAGCAAAGATG-----CGAGTGTAAATta
gi|8 : TACATGGAGA-GATTATTAACAAATCGTCGTTTTTATGCTTTTAACGTGGCGTTAGAAAGGGTTGTTTT-A-TAATCA--GCAtatataagtatagttgttttactttttcattcggattgaacagatacgatt
gi|9 : CTCTTCAAACAGCTGCCAATGCTGAAAGACCTATG-CACC----CAAG-TCCAGTCTTCGCAAGTGGGTCA--------CTGTC-ACTTCta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAACCTTCAATCTTCAATATCAAGTGTCAGCCATATGTTTACACATTTAAATACTGACAAATTAACATTTGGGTAGTTTTCAGTTA
Alignments
lowQualScore : 111 11 33333333 11 111 111 222222222222222 2222 2222 11 6666666666666666 1 66666666666666666666
lowQualScore : 3 8 444 3 3 1 3 0 3 2 11 66666666 00 99 22 0 5 6 99 0 111 1 3 444 3 555555555555555 1111 1111 00 8888888888888888 3 1 1 1 99999999999999999999 1 1 22 3 99999 1
lowQualScore : . . ... . . . . . . . .. ........ .. .. .. . . . .. . ... . . ... . ............... .... .... .. ................ . . . . .................... . . .. . ..... .
lowQualScore : 2 0 000 2 2 2 2 2 2 5 22 22222222 22 44 00 8 2 7 22 7 777 0 5 000 8 000000000000000 2222 2222 00 3333333333333333 3 0 0 0 55555555555555555555 0 0 00 6 11111 0
consensus : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTACA--T-CTCCAAG-AA-CATCTTTCGACGGGA----ACC----TCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
Reference ( family-1146 ) : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTACA--T-CTCCAAG-AA-CATCTTTCGACGGGA----ACC----TCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
gi|1 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTTCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACCTATCATCGTTTTTATGTTTTTAACGTGGTGTTGAAAAGGGTCGTTTTGA-TAAAAACTACAAGAATCAGC---ATGCTTCAATAGT---ACTACAGCTACTCCAAGAAA-CATCTTTTGACGGGA----ACC----TCCATATCCACAGAATCAACTT-----------T-GT-CTTCAAGAATCATCTTTTAAACAACTTATCTACTAGAATCTTCTAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTTACGCCATGCTTTAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAACAG--------------------CATGGAAGATGGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTTCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCATCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTAAA
gi|10 : aTTAATGTGGTGTTAAAAAAGGTCGTTTAGA-TATTCA--ACAAGAATCAGC---ATGCTACAcagacagacattttgttatcttcctcattaattgcacgatacattaaatacagtcaagctacagtagttatttgactcggccagaattcaatttccatttgagaacacatttatcatatagacacttccaggtagatatacgataatataatactaattatactactttatacaagtccagttaacagtaggcctaccaatatgtcagtccggagccgaaatcgcgtggttacaagtccaagacgatacagagaaaacacgcatacggatatttacatatatatattatgtatttagagaattgtataaa
gi|11 : aacctactaaacatttcaAGAATCGGC---ATGCCTC-----T---ACTGTA----CTTCAAG-AGTCATCTTTCGATGGGATTTTACC----TTCTTATCAACTAAATCg
gi|12 : TTATCTTGATTGCCAAAAAGTCTAGATTTAAG-TT-----CGATAGTAAACAAACGCTTAA
gi|13 : tGCCTAGAGCTAAG-TGCAGTGCGAGGGTAAATAAACACTTAA
gi|14 : GCCTAGAGCTAAG-AG-----TGAGGGTAAAGAAACACTTAacatac
gi|15 : GCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACGCTTAtacatac
gi|16 : CCTAGAGCTAAG-TG-----CGAGGGTGAAGAAACGCTTAtacata
gi|17 : CTCGCCATAAAGCCCAGAGCTAAG-TG-----CGAGGGTAAATAAAtacata
gi|18 : CCCAAAAGCTTAGAGCCAAG-TG-----CGAGGGTAAAGAAA
gi|19 : GCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTT
gi|2 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACGAATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTAAATAATCA--ACAAGAATCAGC---ATGCTACAATAGT---ACTACA--T-CTCCAAG-AAACATCTTTTGACGGGA----ACC----TCCATATCATCAGAATCAACTTAGCCAAAA-AAT-GGACTTCAAGAATCATC-TCTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGCAATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCATCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATTGAACATCATATCGCCAAGAACCAACTTAGAGAATAATCATCTTATCCAGCCAGTGGTGCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCTACTTATCCTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACACTTAA
gi|20 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGA
gi|3 : ccAGGGTTGTTTTTA-TAATCA--CCAAGAAACAGC---ATGCTTCTACAGT---ACT-------CT----------ATCTTTCGACGGGA----ACTGGCTTTCATAGGAAC----------T-GC----GTAATCGT-CTTCAAGAAACAAC-TTTAATCTTCGTCTCTACAGGAA
gi|4 : TTTACATGGAGT-GATTTTTAACCTATCATCGATTTTATGTTTT-AACATGGTGATAAAAGGGGTCGTTTTGG-TATTCA--ACAAGAATAGGCATTATACTGCAGTAATATAACTACA--T-TGGCGAG-AA-
gi|5 : CTCTTCAAGC--------A-GC---A----GGACGTCCACTGGAT-AGCCCAAGCCTTC-AAAGTGGGTCAGATTTTAGTGATCGTCTTCACTTCTACATGTAGACGATTTTT
gi|6 : acaGCTCGCCAAAATGTCTAGAGCAAAGATG-----CGAGTGTAAATta
gi|8 : TACATGGAGA-GATTATTAACAAATCGTCGTTTTTATGCTTTTAACGTGGCGTTAGAAAGGGTTGTTTT-A-TAATCA--GCAtatataagtatagttgttttactttttcattcggattgaacagatacgatt
gi|9 : CTCTTCAAACAGCTGCCAATGCTGAAAGACCTATG-CACC----CAAG-TCCAGTCTTCGCAAGTGGGTCA--------CTGTC-ACTTCta
blockSeqs : G T TGA G T T T A C GC GATTTTAG GT AC GA G A . ATT A A ATA G TCTCCAAGAAA TTTT GGCT TA AGCCAAAAAATGGA . A A T ATCTTAACAACTGGATCAAA T G TA A CAGTG C
blockSeqs : G . . G T C T A C T . C G CT A . . . T A . A CTTCAAGAGT . . AG GCGTAATCGT . . . T
blockSeqs : A . . A . A . . . A . A T AA T . . . A T . A TTGGCGAGAA . . . . . G
blockSeqs : . . . . A G . . . T A . . CT . . G
blockSeqs : . . . . G . . . G
blockSeqs : . . T
blockSeqs : . . G
blockSeqs : . . T
blockSeqs : . . G
blockSeqs : . . T
blockSeqCons : ** CTCGAGA********
originalCons : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTACA--T-CTCCAAG-AA-CATCTTTCGACGGGA----ACC----TCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
finalCons : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTACACTCGAGA--------CATCTTTCGACGGGA----ACC----TCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAACCTTCAATCTTCAATATCAAGTGTCAGCCATATGTTTACACATTTAAATACTGACAAATTAACATTTGGGTAGTTTTCAGTTA
Alignments
lowQualScore : 111 11 33333333 11 111 111 6666666666666666666666 333333333 11 6666666666666666 1 66666666666666666666
lowQualScore : 3 8 444 3 3 1 3 0 3 2 11 66666666 00 99 22 0 5 6 99 0 111 1 444 6666666666666666666666 333333333 00 8888888888888888 3 1 1 1 99999999999999999999 1 1 22 3 99999 1
lowQualScore : . . ... . . . . . . . .. ........ .. .. .. . . . .. . ... . ... ...................... ......... .. ................ . . . . .................... . . .. . ..... .
lowQualScore : 2 0 000 2 2 2 2 2 2 5 22 22222222 22 44 00 8 2 7 22 7 777 0 000 6666666666666666666666 555555555 00 3333333333333333 3 0 0 0 55555555555555555555 0 0 00 6 11111 0
consensus : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTAC----A-CT--CCAAGAGA--CATCTTTCGACGGGA----A----CCTCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
Reference ( family-1146 ) : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACNNATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTGA-TAATCA--ACAAGAATCGGC---ATGCTNCAATAGT---ACTAC----A-CT--C---GAGA--CATCTTTCGACGGGA----A----CCTCCATATCAACAGAATCAACTT-GC----G-AAT-GT-CTTCAAGAATCATC-TTTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTNACGCNATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCANCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATNGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTNCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCNNCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAANAAACGCTTAA
gi|1 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTTCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACCTATCATCGTTTTTATGTTTTTAACGTGGTGTTGAAAAGGGTCGTTTTGA-TAAAAACTACAAGAATCAGC---ATGCTTCAATAGT---ACTACAGCTA-CT--CCAAGAAA--CATCTTTTGACGGGA----A----CCTCCATATCCACAGAATCAACTT-----------T-GT-CTTCAAGAATCATCTTTTAAACAACTTATCTACTAGAATCTTCTAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTTACGCCATGCTTTAAGCTCAGCGGGTTGAGATTGACCCAGTCAACAGCAACTTTAAACTCGACAACAG--------------------CATGGAAGATGGAACATCATATCGCCAAGAACCAGCCTAGAGAATAATCATCTTATCCAGCCAGTGGTTCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCATCTTATCTTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTAAA
gi|10 : aTTAATGTGGTGTTAAAAAAGGTCGTTTAGA-TATTCA--ACAAGAATCAGC---ATGCTACAcagacagacattttgttatcttcctcattaattgcacgatacattaaatacagtcaagctacagtagttatttgactcggccagaattcaatttccatttgagaacacatttatcatatagacacttccaggtagatatacgataatataatactaattatactactttatacaagtccagttaacagtaggcctaccaatatgtcagtccggagccgaaatcgcgtggttacaagtccaagacgatacagagaaaacacgcatacggatatttacatatatatattatgtatttagagaattgtataaa
gi|11 : aacctactaaacatttcaAGAATCGGC---ATGCCTCTACTGT---ACT---------T--C---AAGAGTCATCTTTCGATGGGATTTTA----CCTTCTTATCAACTAAATCg
gi|12 : TTATCTTGATTGCCAAAAAGTCTAGATTTAAG-TT-----CGATAGTAAACAAACGCTTAA
gi|13 : tGCCTAGAGCTAAG-TGCAGTGCGAGGGTAAATAAACACTTAA
gi|14 : GCCTAGAGCTAAG-AG-----TGAGGGTAAAGAAACACTTAacatac
gi|15 : GCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACGCTTAtacatac
gi|16 : CCTAGAGCTAAG-TG-----CGAGGGTGAAGAAACGCTTAtacata
gi|17 : CTCGCCATAAAGCCCAGAGCTAAG-TG-----CGAGGGTAAATAAAtacata
gi|18 : CCCAAAAGCTTAGAGCCAAG-TG-----CGAGGGTAAAGAAA
gi|19 : GCCTAGAGCTAAG-TG-----CGAGGGTAAATAAACACTT
gi|2 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGACGTCTCCTGGGCAAGCTCCAGCCTTC-TAAGTGGGTCA--------CGGTC-CCTCCACGTTTACATGGAGG-GATTTTTAACGAATCATCGTTTTTATGTTTTTAACGTGGTGTTAAAAAGGGTCGTTTTAAATAATCA--ACAAGAATCAGC---ATGCTACAATAGT---ACTAC----ATCT--CCAAGAAA--CATCTTTTGACGGGA----A----CCTCCATATCATCAGAATCAACTTAGCCAAAA-AAT-GGACTTCAAGAATCATC-TCTAATCAACTTATCTACTAGAATCTTCCAGAATCTTCATCGTCGGGCTACTCGTCTGTTTGACAGCTTCGGTCTCAAATCGCTTTAATGCAATGCTTCAAGCTCAGCGGGTTGAGATTGACCCAGTCATCAGCAACCTTAAACTCGACAACAGATCTTAACAACTGGATCAAACATGGAAGATTGAACATCATATCGCCAAGAACCAACTTAGAGAATAATCATCTTATCCAGCCAGTGGTGCAACACCGGGAGGAGTAGCGAACCTGCCGATGCTGTCCACTGGCATCGTAATCTACTTATCCTGCTCGCCAAAAAGCCTAGAGCTAAG-TG-----CGAGGGTAAAGAAACACTTAA
gi|20 : CTCTTCAAGCGGCTGTCGA-GC---AGGACGGA
gi|3 : ccAGGGTTGTTTTTA-TAATCA--CCAAGAAACAGC---ATGCTTCTACAGT---ACT--------CT-------------ATCTTTCGACGGGA----ACTGGCTTTCATAGGAAC----------T-GC----GTAATCGT-CTTCAAGAAACAAC-TTTAATCTTCGTCTCTACAGGAA
gi|4 : TTTACATGGAGT-GATTTTTAACCTATCATCGATTTTATGTTTT-AACATGGTGATAAAAGGGGTCGTTTTGG-TATTCA--ACAAGAATAGGCATTATACTGCAGTAATATAACTAC----A-TTGGC---GAGA--
gi|5 : CTCTTCAAGC--------A-GC---A----GGACGTCCACTGGAT-AGCCCAAGCCTTC-AAAGTGGGTCAGATTTTAGTGATCGTCTTCACTTCTACATGTAGACGATTTTTa
gi|6 : acaGCTCGCCAAAATGTCTAGAGCAAAGATG-----CGAGTGTAAATta
gi|8 : TACATGGAGA-GATTATTAACAAATCGTCGTTTTTATGCTTTTAACGTGGCGTTAGAAAGGGTTGTTTT-A-TAATCA--GCAtatataagtatagttgttttactttttcattcggattgaacagatacgatt
gi|9 : CTCTTCAAACAGCTGCCAATGCTGAAAGACCTATG-CACC----CAAG-TCCAGTCTTCGCAAGTGGGTCA--------CTGTC-ACTTCta
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): AATAACCTTCAATCTTCAATATCAAGTGTCAGCCATATGTTTACACATTTAAATACTGACAAATTAACATTTGGGTAGTTTTCAGTTA