lowQualScore : 2 1 66666666666666666666666 2222222 11111 11111 1 44444444444444444444444444444444444444444 1 4444 1
lowQualScore : 6 0 6 2 55555555555555555555555 8 2 4 6666666 3 88888 0 5 66666 1 7 0 0 1 5 88888888888888888888888888888888888888888 0 3 1 666 2 0 1 66 3 3 4 5 555 8888 5
lowQualScore : . . . . ....................... . . . ....... . ..... . . ..... . . . . . . ......................................... . . . ... . . . .. . . . . ... .... .
lowQualScore : 0 0 0 0 44444444444444444444444 0 8 6 8888888 5 22222 3 3 33333 0 5 5 8 4 0 00000000000000000000000000000000000000000 9 6 2 444 6 7 1 99 0 2 0 0 000 5555 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGC-GA-TGNAAGCTCAGAGCTTN----TATGAANCGCTCTC----GAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCAC--TNCTTCTTTNCGGCACNCNTTT--TGAAATTTTA
Reference ( gi|1 ) : TTGTTCCTTTTGTCTTACACGAAAATATTTTTAATATCGTTAAAAAGCAAAATATTGAAACTAGCTGTTTTTGTATATTTTTTAACATTATTTATGTTCAATAAACGGTATCGTA-TTTCTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GCTCGATTGC-GG-TGAAAGCTCAGAGCTTA----TATGAAACGCTCTC----GAGTCTGCTTCCTGGGTAGAACCAGTACTGAGTG-TTG-TTTTATGAGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCAT--TTCTTCTTTACATTATACTTTTTGTGAAAGTTTAAGTTTATCCGATTGGTGGAGAGCTGTGCTACTAATGCTACTAATAAAATCCCAAATTATATAGTGGTTATAATATTTATTGATTTCGATCTTACACATTTGTAATATATATATATATATTTATATATATTTATATAAACATGCTATTTTGTACAGTTTATTGGGTCCGGGGGTGGTGGTGGGGTGGATAATCAGCTCCGACTTACATGTATTACTTGTTGAATTAAAGGACCTACATTTGTTAAGTGACTGAAATAAAATATAAT
gi|8 : ATTGTAATTTTTTCTTA--TTTACA-----T-----------TTAT--ATTTTA-GTAGGGTTGT-AACTGAA--CCGAGAGCTTA----TTTGAATCACTCTT----GAGTCTGTATCCT
gi|14 : aatgattg-TTTTTTCTTCAATGTATATGATTC-----------TAATTTATTTTA-CCTTGATTGT-GA-AGCAAGTTTAAAGTGTATAATTATGAAATGCT
gi|3 : AGATTTATA-----TATTGGTAGTTATGATTTATTTCA-GTTCAGTAACAAA-T--AAGTTCAGACTTTT----TGTGAAACATTCTC----AAGTCCATTTTCTTAGTAAAAGTAACACTG-----------------GGGG--TC-GAGTC-A-------GGGATTGAAACCGCCACAT-CTCACTTGA---CCTGCCAACA-------CAC--TTTTTCCTTTCAGTATATAT----TGAAATTTTA
gi|6 : TTTATA-----C-----------AAAC---TTTTA-GTTTGATTGC-AA-TATATGCCCAGGGCTTT----TGTG-ACCACCCTG----AAGTCTAATTTCTGTGTAGAGCAACTGCTGGGCATTTG-TTTT
gi|2 : ctactacactgttcacTTATA-----C-----------TA---TGTTTTAAGTTTGATTGC-GA-TGAAAGCTCAGAGCTTA----TATGAACCGCTATC----GAGTTCGTTTCCTGAGTAGACCCAGTACTGAGTG-TTGTTTTTATCAGAGGCATC-GTGTCGAG-TTG--GGGATCGAACCCGCAACCT-CTGGCGTGA---GTGACCGACGCTCTATCCAT--Tcaga
gi|18 : AAGCTCAGAATTTT----CATGAATCACTCTT----GAGTCTGTTTacacttccaccccgcttacatat
gi|7 : caaattTGAAACGTTATTTATGAAGT-TGTTTCCTGTCTAGAACCAGTA------G-TTG--TTAATGAAAG---T-----TC-AA-ACCC-GGGATCTCATCCGCGG--T-GTGACGTGA---TCGGTCAACA
gi|13 : CTAGTAATGATTG-TTG-TTTT----GAACCATCCGT-TC-AA-TCCT-CGGACTGAAATTGCAGCCT-TTGCCGTGA---GCTGTCAATAC
gi|12 : GTATC-GTGTC----CCA----GCTCGACCCCACAACAT-GTGGCGTGA---GAAGCAAACACTATTTCCAT--Tatt
gi|10 : CATC-GAGTA-AAGTCATTGGGATCGAACCTGC-ACCTGTTGTCATGG---GCAACCAACATTCTTTCTAC--TGCT--TTTACGGCACCCTTTTacactccctgcacccccctta
gi|16 : C-AA-TCGT----ATTGAACCTGCAACCT-CTGTTGTGA---GCAGCTAATTATATATCCAC--TGCTTC
gi|15 : cGGATTAAATCAGCAACCT-TCTGTGCGA---GTGCCCAGCACTCTATCC
gi|11 : agttgcAATCCATAACCT-CTAACGTGAGAGGCCGCCAATATTCTATTCAT--Tgctacactgtt
gi|19 : ggtaaAACCT-CTAGCATGA---GCGGCCAACACTATATACATCGCTCTTCTgcacttacacctcgtttttacctgtgattgtttt
gi|17 : CCT-CTAGTATGA---GCAATCAACACTCCATCCAC--T
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|4 ): TTTCAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTATAAATATTTTATTATTATAAACAATTATAATATATATTGAAAAATAAAAGAATACAAAATAATAACCATGTATTTTATATTTATT
Unaligned ( gi|5 ): TGTTTTGATTTGGTTTGATTGCAAAGTAGGTTCAGAACTTTCATGAATCACTCCTGATTCTGTTTTTTTTTGTAGAGCCATAGTAAATGTTCTTTTAGAGACACCAGAAGGTTGTGTCCAG
Unaligned ( gi|9 ): CTGTACTAAGTGTTGTTTTTTTTACAGCATCATTTTGAGCTTGAACCACTGGCTTGAGTGGATATCCACTACATTACTGCCTCACTTACA
Alignments
lowQualScore : 1 44444444444444444 11 11111 22222222222222222 2222222222 111 11
lowQualScore : 5 6 33333333333333333 3 1 6 2 00 1 1 33333 1 0 1 2 77777777777777777 33 5 22 3333333333 3 0 555 1 1 55 111 1 888 33 3
lowQualScore : . . ................. . . . . .. . . ..... . . . . ................. .. . .. .......... . . ... . . .. ... . ... .. .
lowQualScore : 5 5 77777777777777777 2 7 7 2 22 0 7 11111 0 7 0 5 11111111111111111 11 7 66 5555555555 3 2 888 6 0 77 222 0 888 88 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGC-TTCTTTACGGCACNCTTTT--TGAAANTTTA
Reference ( family-112 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTNC-TTCTTTNCGGCACNCNTTT--TGAAATTTTA
gi|1 : ATCGTA-TTTCTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GCTCGATTGCGG-TGAAAGCTCAGAGCTT----ATATGAAACGCTCTCGAGTCTGCTTCCTGGGTAGAACCAGTACTGAGTG-TTG-TTTTATGAGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCATTTC-TTCTTTACATTATACTTTTTGTGAAAGTTTA
gi|10 : ttgttccttttgtcttacacgaaaatatttttaatatcgttaaaaagcaaaatattgaaactagctgtttttgtatattttttaacattatttatgttcaataaacggtCATC-GAGTA-AAGTCATTGGGATCGAACCTGC-ACCTGTTGTCATGG---GCAACCAACATTCTTTCTACTGC-T--TTTACGGCACCCTTTT--agtttatccgattggtggagagctgtgctactaatgctactaataaaatcccaaattatatagtggttataatatttattgatttcgatcttacacatttgtaatatatatatatatatttatatatatttatataaacatgctattttgtacagtttattgggtccgggggtggtggtggggtggataatcagctccgacttacatgtattacttgttgaattaaaggacctacatttgttaagtgactgaaataaaatataat
gi|11 : AATCCATAACCT-CTAACGTGAGAGGCCGCCAATATTCTATTCATTGC-
gi|12 : ggtaaGTATC-GTGTC----CC----AGCTCGACCCCACAACAT-GTGGCGTGA---GAAGCAAACACTATTTCCATTACACTCCCT---GCACCCCCCT--Tacttacacctcgtttttacctgtgattgtttt
gi|13 : CTAGTAATGATTG-TTG-TTTT----GAACCATCCGT-TC-AA-TCCT-CGGACTGAAATTGCAGCCT-TTGCCGTGA---GCTGTCAATACa
gi|14 : TTTTTTCTTCAATGTATATGATTC-----------TAATTTATTTTA-CCTTGATTGTGA-AGCAAGTTTAAAGTGTATAATTATGAAATGCTatt
gi|15 : GGATTAAATCAGCAACCT-TCTGTGCGA---GTGCCCAGCACTCTATCCGCTAC-
gi|16 : agttgcC-AA-TCGT----ATTGAACCTGCAACCT-CTGTTGTGA---GCAGCTAATTATATATCCACTGC-TTCactgtt
gi|17 : cCCT-CTAGTATGA---GCAATCAACACTCCATCCACTGC-
gi|18 : AAGCTCAGAATTT----TCATGAATCACTCTTGAGTCTGTTTacgaccacccagtttatatattt
gi|19 : caaattAACCT-CTAGCATGA---GCGGCCAACACTATATACATCGC--TCTT
gi|2 : TTATA-----C-----------TA---TGTTTTAAGTTTGATTGCGA-TGAAAGCTCAGAGCTT----ATATGAACCGCTATCGAGTTCGTTTCCTGAGTAGACCCAGTACTGAGTG-TTGTTTTTATCAGAGGCATC-GTGTCGAG-TTG--GGGATCGAACCCGCAACCT-CTGGCGTGA---GTGACCGACGCTCTATCCATTAC-ct
gi|3 : AGATTTATA-----TATTGGTAGTTATGATTTATTTCA-GTTCAGTAACAA--ATAAGTTCAGACTTT----TTGTGAAACATTCTCAAGTCCATTTTCTTAGTAAAAGTAACACTG-----------------GGGG--TC-GAGTC-A-------GGGATTGAAACCGCCACAT-CTCACTTGA---CCTGCCAACA-------CACTTT-TTCCTTTCAGTATATA--T--TGAAATTTTAacttccaccccgcttacatat
gi|6 : TTTATA-----C-----------AAACTT---TTA-GTTTGATTGCAA-TATATGCCCAGGGCTT----TTGTG-ACCACCCTGAAGTCTAATTTCTGTGTAGAGCAACTGCTGGGCATTTG-TTTT
gi|7 : ctactacactgttcacGTTTCCTGTCTAGAACCAGTA------G-TTG--TTAAT-GAAAGT-------TC-AA-ACCC-GGGATCTCATCCGCGG--T-GTGACGTGA---TCGGTCAACAcaga
gi|8 : tgaaacgttatttatgaagttATTGTAATTTTTTCTTA--TTTACA-----T-----------TTAT--ATTTTA-GTAGGGTTGTAACTGAA--CCGAGAGCTT----ATTTGAATCACTCTTGAGTCTGTATCCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTTCAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTATAAATATTTTATTATTATAAACAATTATAATATATATTGAAAAATAAAAGAATACAAAATAATAACCATGTATTTTATATTTATT
Unaligned ( gi|5 ): TGTTTTGATTTGGTTTGATTGCAAAGTAGGTTCAGAACTTTCATGAATCACTCCTGATTCTGTTTTTTTTTGTAGAGCCATAGTAAATGTTCTTTTAGAGACACCAGAAGGTTGTGTCCAG
Unaligned ( gi|9 ): CTGTACTAAGTGTTGTTTTTTTTACAGCATCATTTTGAGCTTGAACCACTGGCTTGAGTGGATATCCACTACATTACTGCCTCACTTACA
Alignments
lowQualScore : 1 44444444444444444 11 11111 22222222222222222 2222222222 11
lowQualScore : 5 6 33333333333333333 3 1 6 2 00 1 1 33333 1 0 1 2 77777777777777777 33 5 22 3333333333 3 0 555 1 11 0 0 888 88 1
lowQualScore : . . ................. . . . . .. . . ..... . . . . ................. .. . .. .......... . . ... . .. . . ... .. .
lowQualScore : 5 5 77777777777777777 2 7 7 2 22 0 7 11111 0 7 0 5 11111111111111111 11 7 66 5555555555 3 2 888 6 66 7 7 333 33 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGTATACTTTT--TGAAANTTTA
Reference ( family-112 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGCACNCTTTT--TGAAANTTTA
gi|1 : ATCGTA-TTTCTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GCTCGATTGCGG-TGAAAGCTCAGAGCTT----ATATGAAACGCTCTCGAGTCTGCTTCCTGGGTAGAACCAGTACTGAGTG-TTG-TTTTATGAGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCATTTCTTCTTTACATTATACTTTTTGTGAAAGTTTA
gi|10 : ttgttccttttgtcttacacgaaaatatttttaatatcgttaaaaagcaaaatattgaaactagctgtttttgtatattttttaacattatttatgttcaataaacggtCATC-GAGTA-AAGTCATTGGGATCGAACCTGC-ACCTGTTGTCATGG---GCAACCAACATTCTTTCTACTGCT--TTTACGGCACCCTTTT--agtttatccgattggtggagagctgtgctactaatgctactaataaaatcccaaattatatagtggttataatatttattgatttcgatcttacacatttgtaatatatatatatatatttatatatatttatataaacatgctattttgtacagtttattgggtccgggggtggtggtggggtggataatcagctccgacttacatgtattacttgttgaattaaaggacctacatttgttaagtgactgaaataaaatataat
gi|11 : AATCCATAACCT-CTAACGTGAGAGGCCGCCAATATTCTATTCATTGC
gi|12 : ggtaaGTATC-GTGTC----CC----AGCTCGACCCCACAACAT-GTGGCGTGA---GAAGCAAACACTATTTCCATTACacttacacctcgtttttacctgtgattgtttt
gi|13 : CTAGTAATGATTG-TTG-TTTT----GAACCATCCGT-TC-AA-TCCT-CGGACTGAAATTGCAGCCT-TTGCCGTGA---GCTGTCAATACactccctgcacccccctta
gi|14 : TTTTTTCTTCAATGTATATGATTC-----------TAATTTATTTTA-CCTTGATTGTGA-AGCAAGTTTAAAGTGTATAATTATGAAATGCTatt
gi|15 : GGATTAAATCAGCAACCT-TCTGTGCGA---GTGCCCAGCACTCTATCCGCTAC
gi|16 : agttgcC-AA-TCGT----ATTGAACCTGCAACCT-CTGTTGTGA---GCAGCTAATTATATATCCACTGCTTCactgtt
gi|17 : cCCT-CTAGTATGA---GCAATCAACACTCCATCCACTGC
gi|18 : AAGCTCAGAATTT----TCATGAATCACTCTTGAGTCTGTTTacgaccacccagtttatatattt
gi|19 : caaattAACCT-CTAGCATGA---GCGGCCAACACTATATACATCGC-TCTT
gi|2 : TTATA-----C-----------TA---TGTTTTAAGTTTGATTGCGA-TGAAAGCTCAGAGCTT----ATATGAACCGCTATCGAGTTCGTTTCCTGAGTAGACCCAGTACTGAGTG-TTGTTTTTATCAGAGGCATC-GTGTCGAG-TTG--GGGATCGAACCCGCAACCT-CTGGCGTGA---GTGACCGACGCTCTATCCATTACct
gi|3 : AGATTTATA-----TATTGGTAGTTATGATTTATTTCA-GTTCAGTAACAA--ATAAGTTCAGACTTT----TTGTGAAACATTCTCAAGTCCATTTTCTTAGTAAAAGTAACACTG-----------------GGGG--TC-GAGTC-A-------GGGATTGAAACCGCCACAT-CTCACTTGA---CCTGCCAACA-------CACTTTTTCCTTTCAGTATA--TAT--TGAAATTTTAacttccaccccgcttacatat
gi|6 : TTTATA-----C-----------AAACTT---TTA-GTTTGATTGCAA-TATATGCCCAGGGCTT----TTGTG-ACCACCCTGAAGTCTAATTTCTGTGTAGAGCAACTGCTGGGCATTTG-TTTT
gi|7 : ctactacactgttcacGTTTCCTGTCTAGAACCAGTA------G-TTG--TTAAT-GAAAGT-------TC-AA-ACCC-GGGATCTCATCCGCGG--T-GTGACGTGA---TCGGTCAACAcaga
gi|8 : tgaaacgttatttatgaagttATTGTAATTTTTTCTTA--TTTACA-----T-----------TTAT--ATTTTA-GTAGGGTTGTAACTGAA--CCGAGAGCTT----ATTTGAATCACTCTTGAGTCTGTATCCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTTCAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTATAAATATTTTATTATTATAAACAATTATAATATATATTGAAAAATAAAAGAATACAAAATAATAACCATGTATTTTATATTTATT
Unaligned ( gi|5 ): TGTTTTGATTTGGTTTGATTGCAAAGTAGGTTCAGAACTTTCATGAATCACTCCTGATTCTGTTTTTTTTTGTAGAGCCATAGTAAATGTTCTTTTAGAGACACCAGAAGGTTGTGTCCAG
Unaligned ( gi|9 ): CTGTACTAAGTGTTGTTTTTTTTACAGCATCATTTTGAGCTTGAACCACTGGCTTGAGTGGATATCCACTACATTACTGCCTCACTTACA
Alignments
lowQualScore : 1 44444444444444444 11 11111 22222222222222222 2222222222 11
lowQualScore : 5 6 33333333333333333 3 1 6 2 00 1 1 33333 1 0 1 2 77777777777777777 33 5 22 3333333333 3 0 555 1 11 0 6 88 1
lowQualScore : . . ................. . . . . .. . . ..... . . . . ................. .. . .. .......... . . ... . .. . . .. .
lowQualScore : 5 5 77777777777777777 2 7 7 2 22 0 7 11111 0 7 0 5 11111111111111111 11 7 66 5555555555 3 2 888 6 66 7 7 33 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGTATACTTTT--TGAAANTTTA
Reference ( family-112 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGTATACTTTT--TGAAANTTTA
gi|1 : ATCGTA-TTTCTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GCTCGATTGCGG-TGAAAGCTCAGAGCTT----ATATGAAACGCTCTCGAGTCTGCTTCCTGGGTAGAACCAGTACTGAGTG-TTG-TTTTATGAGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCATTTCTTCTTTACATTATACTTTTTGTGAAAGTTTA
gi|10 : ttgttccttttgtcttacacgaaaatatttttaatatcgttaaaaagcaaaatattgaaactagctgtttttgtatattttttaacattatttatgttcaataaacggtCATC-GAGTA-AAGTCATTGGGATCGAACCTGC-ACCTGTTGTCATGG---GCAACCAACATTCTTTCTACTGCT--TTTACGGCACCCTTTT--agtttatccgattggtggagagctgtgctactaatgctactaataaaatcccaaattatatagtggttataatatttattgatttcgatcttacacatttgtaatatatatatatatatttatatatatttatataaacatgctattttgtacagtttattgggtccgggggtggtggtggggtggataatcagctccgacttacatgtattacttgttgaattaaaggacctacatttgttaagtgactgaaataaaatataat
gi|11 : AATCCATAACCT-CTAACGTGAGAGGCCGCCAATATTCTATTCATTGC
gi|12 : ggtaaGTATC-GTGTC----CC----AGCTCGACCCCACAACAT-GTGGCGTGA---GAAGCAAACACTATTTCCATTACacttacacctcgtttttacctgtgattgtttt
gi|13 : CTAGTAATGATTG-TTG-TTTT----GAACCATCCGT-TC-AA-TCCT-CGGACTGAAATTGCAGCCT-TTGCCGTGA---GCTGTCAATACactccctgcacccccctta
gi|14 : TTTTTTCTTCAATGTATATGATTC-----------TAATTTATTTTA-CCTTGATTGTGA-AGCAAGTTTAAAGTGTATAATTATGAAATGCTatt
gi|15 : GGATTAAATCAGCAACCT-TCTGTGCGA---GTGCCCAGCACTCTATCCGCTAC
gi|16 : agttgcC-AA-TCGT----ATTGAACCTGCAACCT-CTGTTGTGA---GCAGCTAATTATATATCCACTGCTTCactgtt
gi|17 : cCCT-CTAGTATGA---GCAATCAACACTCCATCCACTGC
gi|18 : AAGCTCAGAATTT----TCATGAATCACTCTTGAGTCTGTTTacgaccacccagtttatatattt
gi|19 : caaattAACCT-CTAGCATGA---GCGGCCAACACTATATACATCGC-TCTT
gi|2 : TTATA-----C-----------TA---TGTTTTAAGTTTGATTGCGA-TGAAAGCTCAGAGCTT----ATATGAACCGCTATCGAGTTCGTTTCCTGAGTAGACCCAGTACTGAGTG-TTGTTTTTATCAGAGGCATC-GTGTCGAG-TTG--GGGATCGAACCCGCAACCT-CTGGCGTGA---GTGACCGACGCTCTATCCATTACct
gi|3 : AGATTTATA-----TATTGGTAGTTATGATTTATTTCA-GTTCAGTAACAA--ATAAGTTCAGACTTT----TTGTGAAACATTCTCAAGTCCATTTTCTTAGTAAAAGTAACACTG-----------------GGGG--TC-GAGTC-A-------GGGATTGAAACCGCCACAT-CTCACTTGA---CCTGCCAACA-------CACTTTTTCCTTTCAGTATA--TAT--TGAAATTTTAacttccaccccgcttacatat
gi|6 : TTTATA-----C-----------AAACTT---TTA-GTTTGATTGCAA-TATATGCCCAGGGCTT----TTGTG-ACCACCCTGAAGTCTAATTTCTGTGTAGAGCAACTGCTGGGCATTTG-TTTT
gi|7 : ctactacactgttcacGTTTCCTGTCTAGAACCAGTA------G-TTG--TTAAT-GAAAGT-------TC-AA-ACCC-GGGATCTCATCCGCGG--T-GTGACGTGA---TCGGTCAACAcaga
gi|8 : tgaaacgttatttatgaagttATTGTAATTTTTTCTTA--TTTACA-----T-----------TTAT--ATTTTA-GTAGGGTTGTAACTGAA--CCGAGAGCTT----ATTTGAATCACTCTTGAGTCTGTATCCT
blockSeqs : A A TATTGGTAGTTA T A A T CT C A ATAAT A A A AGTGTTGTTTTTATCA CA C AG AAGTCATTG G GAG A TT C . T
blockSeqs : G TGATTC T G . T A A A T T A C ATTGTTGTTTT TA . TG AATCCTC . . C TT . .
blockSeqs : . C T A . C T T A A C T C GTTGTTAATG CA . TG GAGTTGG . . A T
blockSeqs : C . A . T T T A T A T C . CA . AG AAACCCG . . T T
blockSeqs : T . . . G . A T T C . T . T AATCGT . . G
blockSeqs : . A T . . . CC . . A
blockSeqs : AG . . A
blockSeqs : . . G
blockSeqs : . . G
blockSeqs : . . T
blockSeqs : . . G
blockSeqCons : GTGTTGT**********
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGAGCG-TTG-TTTTAT-AGAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGTATACTTTT--TGAAANTTTA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTGGTGTTGT----------GAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGTATACTTTT--TGAAANTTTA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTTCAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTATAAATATTTTATTATTATAAACAATTATAATATATATTGAAAAATAAAAGAATACAAAATAATAACCATGTATTTTATATTTATT
Unaligned ( gi|5 ): TGTTTTGATTTGGTTTGATTGCAAAGTAGGTTCAGAACTTTCATGAATCACTCCTGATTCTGTTTTTTTTTGTAGAGCCATAGTAAATGTTCTTTTAGAGACACCAGAAGGTTGTGTCCAG
Unaligned ( gi|9 ): CTGTACTAAGTGTTGTTTTTTTTACAGCATCATTTTGAGCTTGAACCACTGGCTTGAGTGGATATCCACTACATTACTGCCTCACTTACA
Alignments
lowQualScore : 1 44444444444444444 11 11111 1 66666666666 2222222222 11
lowQualScore : 5 6 33333333333333333 3 1 6 2 00 1 1 33333 1 0 1 1 3 0 22222222222 6 5 4 3333333333 3 0 555 1 11 0 6 88 1
lowQualScore : . . ................. . . . . .. . . ..... . . . . . . ........... . . . .......... . . ... . .. . . .. .
lowQualScore : 5 5 77777777777777777 2 7 7 2 22 0 7 11111 0 7 0 0 3 8 00000000000 6 7 3 5555555555 3 2 888 6 66 7 7 33 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTG-GTGTT-GTTTT-----GAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGTATACTTTT--TGAAANTTTA
Reference ( family-112 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTAATTTTTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GTTCGATTGCGA-TGNAAGCTCAGAGCTT----NTATGAANCGCTCTCGAGTCCGTTTCCTGNGTAGAACCAGTACTG-GTGTT-GT--------GAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCACTGCTTCTTTACGGTATACTTTT--TGAAANTTTA
gi|1 : ATCGTA-TTTCTTCTTAGATTTATA-----C-----------TAATTTATTTTA-GCTCGATTGCGG-TGAAAGCTCAGAGCTT----ATATGAAACGCTCTCGAGTCTGCTTCCTGGGTAGAACCAGTACTGAGTGTT-GTTTTATGA-GAGGCATC-GTGTC-AA-TCGT-GGGATCGAACCCGCAACCT-CTGGCGTGA---GCGGCCAACACTCTATCCATTTCTTCTTTACATTATACTTTTTGTGAAAGTTTA
gi|10 : ttgttccttttgtcttacacgaaaatatttttaatatcgttaaaaagcaaaatattgaaactagctgtttttgtatattttttaacattatttatgttcaataaacggtCATC-GAGTA-AAGTCATTGGGATCGAACCTGC-ACCTGTTGTCATGG---GCAACCAACATTCTTTCTACTGCT--TTTACGGCACCCTTTT--agtttatccgattggtggagagctgtgctactaatgctactaataaaatcccaaattatatagtggttataatatttattgatttcgatcttacacatttgtaatatatatatatatatttatatatatttatataaacatgctattttgtacagtttattgggtccgggggtggtggtggggtggataatcagctccgacttacatgtattacttgttgaattaaaggacctacatttgttaagtgactgaaataaaatataat
gi|11 : AATCCATAACCT-CTAACGTGAGAGGCCGCCAATATTCTATTCATTGC
gi|12 : ggtaaGTATC-GTGTC----CC----AGCTCGACCCCACAACAT-GTGGCGTGA---GAAGCAAACACTATTTCCATTACacttacacctcgtttttacctgtgattgtttt
gi|13 : ATTG-TTGTT-TT--------GAACCATCCGT-TC-AA-TCCT-CGGACTGAAATTGCAGCCT-TTGCCGTGA---GCTGTCAATACactccctgcacccccctta
gi|14 : ctagtaatgTTTTTTCTTCAATGTATATGATTC-----------TAATTTATTTTA-CCTTGATTGTGA-AGCAAGTTTAAAGTGTATAATTATGAAATGCTatt
gi|15 : GGATTAAATCAGCAACCT-TCTGTGCGA---GTGCCCAGCACTCTATCCGCTAC
gi|16 : agttgcC-AA-TCGT----ATTGAACCTGCAACCT-CTGTTGTGA---GCAGCTAATTATATATCCACTGCTTCactgtt
gi|17 : cCCT-CTAGTATGA---GCAATCAACACTCCATCCACTGC
gi|18 : AAGCTCAGAATTT----TCATGAATCACTCTTGAGTCTGTTTacgaccacccagtttatatattt
gi|19 : caaattAACCT-CTAGCATGA---GCGGCCAACACTATATACATCGC-TCTT
gi|2 : TTATA-----C-----------TA---TGTTTTAAGTTTGATTGCGA-TGAAAGCTCAGAGCTT----ATATGAACCGCTATCGAGTTCGTTTCCTGAGTAGACCCAGTACTGAGTGTT-GTTTTTATCAGAGGCATC-GTGTCGAG-TTG--GGGATCGAACCCGCAACCT-CTGGCGTGA---GTGACCGACGCTCTATCCATTACct
gi|3 : AGATTTATA-----TATTGGTAGTTATGATTTATTTCA-GTTCAGTAACAA--ATAAGTTCAGACTTT----TTGTGAAACATTCTCAAGTCCATTTTCTTAGTAAAAGTAACACTG-G-----------------GG-GTC-GAGTC-A-------GGGATTGAAACCGCCACAT-CTCACTTGA---CCTGCCAACA-------CACTTTTTCCTTTCAGTATA--TAT--TGAAATTTTAacttccaccccgcttacatat
gi|6 : TTTATA-----C-----------AAACTT---TTA-GTTTGATTGCAA-TATATGCCCAGGGCTT----TTGTG-ACCACCCTGAAGTCTAATTTCTGTGTAGAGCAACTGCTG-G
gi|7 : ctactacactgttcacGTTTCCTGTCTAGAACCAGTA--G-TTGTTAAT--------GAAA-----GT-TC-AA-ACCC-GGGATCTCATCCGCGG--T-GTGACGTGA---TCGGTCAACAgcatttgttttcaga
gi|8 : tgaaacgttatttatgaagttATTGTAATTTTTTCTTA--TTTACA-----T-----------TTAT--ATTTTA-GTAGGGTTGTAACTGAA--CCGAGAGCTT----ATTTGAATCACTCTTGAGTCTGTATCCT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|4 ): TTTCAATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTATAAATATTTTATTATTATAAACAATTATAATATATATTGAAAAATAAAAGAATACAAAATAATAACCATGTATTTTATATTTATT
Unaligned ( gi|5 ): TGTTTTGATTTGGTTTGATTGCAAAGTAGGTTCAGAACTTTCATGAATCACTCCTGATTCTGTTTTTTTTTGTAGAGCCATAGTAAATGTTCTTTTAGAGACACCAGAAGGTTGTGTCCAG
Unaligned ( gi|9 ): CTGTACTAAGTGTTGTTTTTTTTACAGCATCATTTTGAGCTTGAACCACTGGCTTGAGTGGATATCCACTACATTACTGCCTCACTTACA