lowQualScore : 22222222222 111 1 22222 11 1111111 11 333333333333333333333 33333333333333333333 44444444444 111 33333333 2222222222222 111 111 11 555555555555 333 11111 11 5555555555555555555555555555555 1111 1 1 11 11 111111 111111
lowQualScore : 44444444444 99 2 111 0 6 3 5 11111 4 22 8 3 55 3333333 44 0 55 666 8 6 444444444444444444444 0 11111111111111111111 7 00000000000 1 6 4 999 8 77777777 6666666666666 1 000 0 333 55 3 11 888888888888 0 1 4 000 11111 3 00 55 3333333333333333333333333333333 1111 4 5 22 66 111111 1 4 111111
lowQualScore : ........... .. . ... . . . . ..... . .. . . .. ....... .. . .. ... . . ..................... . .................... . ........... . . . ... . ........ ............. . ... . ... .. . .. ............ . . . ... ..... . .. .. ............................... .... . . .. .. ...... . . ......
lowQualScore : 33333333333 22 5 777 7 7 3 7 66666 1 55 5 6 00 0000000 33 1 00 222 9 4 555555555555555555555 3 33333333333333333333 3 88888888888 7 7 2 888 0 00000000 4444444444444 7 000 1 111 88 0 44 555555555555 7 4 0 444 77777 3 00 00 1111111111111111111111111111111 7777 2 5 88 22 555555 5 0 555555
consensus : CTTTTTTT--T--------TT--TTTTNA---GTCA-C-CA-TTN-GN-TGGCCCGTTTATTCTCCCC-GTCGTA-G--GTG-------TGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACACCGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GCTCTCTCATT-CAACCATT--------CATT--------C----TTAGTAT---GTATATAGTATTTCTTCTATAATGTGAC-ATTATTGAAAAAAAT---AT-NAAAATATTTTTTTCTGTCTA-TTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-----AAA-AAAA--T--GTA------------G-G-GG----GGG-GG---GG----ATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
Reference ( gi|1 ) : CTTTTTTT--T--------TT--TTTTGA---ACCA-C-CA-TTT-GT-TGGTCCATTTATTCTCCCC-TTCATA-G--GTG-------TAAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACATCGTACA---------AAAAG-CAT--GCAATTAT---------GAAGTA-----ATATATAAT-----------TATTATT-TTAGTT--ACTCTCTCATT-CAACCATT--------CATT--------C----TTAGTAT---GTATATACTATTTCTTCTATAATGTGAC-TTTATTAAAAAAAAT--GAT-CAA--TATTTTTTTCTGTCTA-TTT-ATGCAATATATCAATATTTTAAATGACGGGGTGTAG-----AAA-AAAA--T--GTA------------GTGTGG----GGG-AG---GG----ATTTTGCGATGTGAGGTTACACATTTGTTTTAAACATGGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|2 : CTTTTTTT--TCCTATTCTTT--TTTTGA---ACCA-C-CA-TTG-GA-TGGCCTGTTTATTCTCCAT-GTTGTA-G--GTG-------TGAGGAGTTCTGG-G-G-AGGTCCATCCTCCTTCACACTGTTCA---------AAAAG-AA----CAGTTGT---------GAAATATAGATATATATAATGTTATAGTTGATATTATT-ATAATA--GCTCTCTCTCT-CAATCATTGAATCTTTCATT--------C----TTAGTAT---GTTTATATAAATTCTTCCATAATGTGATATTTATGACAAAAATTTAAAA-AAA--AATCT-----TAACTA-TTTAAGGCAATGTATCAATATTTCAAATGATGGGGTGTAG-----AAA-AAA
gi|14 : atttatttttttcctctccaaatcatgttTTTTTGT--T--------TTGGTTTTGA---ACAT-C-CA-TTG-GT-CGGCCTGTTTATTTTCCCC-GACATA-G--GTG-------TGAAGAGGTA--G-A-G-GAGACCCTCTTCCtaatagg
gi|8 : tgttgtcttttttttttttttttttttttttttttttttgtatTTTTTTT--T--------TT--TTTTCA---GTCA-CGCA-TTT-GGATGACCCATTTATTCTCCCG-TCC-TA-G--GTG-------TG-------C--G----------CATCCCCCTACACACCTTA-----------------------CAGTTTC---------AAAATA-----A-ATATATT-----------TAT--TT-TTA
gi|19 : ttttttttttttataatattttttttttttTTTTTTTGGT--------TT--TTTTCA---GTCACC-CA-TTTGGG-TGACCCATTTGTTGTCCCT-GTCCTA-G--GTG-------TAtcaatagcatataaaataattcgccacattcattcatctttcat
gi|11 : ttgtttttttggggTCTCT--T--------TA--TTTAGATACATCA-C-CAATTT-AT--GACCCGTTTATTTTCCCC-GCCATA-A--GTGATAAGTGTAAGAAGATC--G-G-GTAGGACCAACCT-ATTCACAGCGTACATTATATAACAAAAA-TATTAACAATTGT---------GA---A-----ATATAAAAT-----------TATCAcagattatgctcctttgttacaccttgca
gi|25 : taT--T--------TT--TTTTCA---GTCA-CTCA-TT--GTGTGACCCATTTATTCTCCCCATTC-TA-G--GTcagcgtgtacacttgtgctatca
gi|23 : A-TTG-GA-TGGCCCTTTTATTCTCCCC-ATCAAA-G--GTG-------TGAGCAGGTCG-G-G-G-AGCACCGCCCTCCTTCAAATTG--CA---------GAGAG-
gi|24 : t-TGGTCCATTTATAGTCCCC-ATCATA-A--GTG-------TGATAGGGTCT-A-G-G-AGGATCACTCa
gi|13 : CCATTTATTCTCCCC-GTCTTATGCTGTG-------TAAGG-GGTC--GAG-G-AGAAACATCCCCTCATACAGCTTACA---------ATAAG---T--GCACATATAAAAGAGAAAAAGTA-----ATG-ATAACAA---------TATTATT-Tc
gi|16 : ttttttatttttcagtttcaaactccaaagtggagtcTTCTCCCC-GTCGCA-A--ATG-------CAAGGAGTTT--G-G-GGAGGATTACACTCCTTCACACCGTACA---------AAAAGACAT--ATAA
gi|3 : ttttaataaccaatggatgtcctgttttctt-TTCGTA-A--CTA-------TAAAACAGTT--G-GTG-AGGACCACTAACCTTCACACTGTACA---------AAAA--CAA--ACAATTAT---------TAAGTT-----A-ATATAAT-----------TATTATTATTATTTTTGCTCTCTCATT-CAACCATT--------CATTATTTCATTC----TTAGTAT---GTATATAGTATTT-TTCTATAATGTGAC-ATTGTTGAAAA---------------TATTTTTT-CTGACTT-TTTTAGGCAATGAATCAATATTTTAAATGACGGGGTGTAG-----AAA-AAAA--T--GTA------------A---GG----GAGTGG---GG----ATTTTGACATGTTAGGTTACACATTTGTTTT-AACAT--ATGTTA------TGTATATTTCATAC------TATTTGTGTGGATACacatataaataccataa
gi|7 : ttaGTACA---------AAAAG-CAA--GCAATTAT---------TAAGTT-----ATATATAAT-----------AATTATT-TTAGCT--GCTTTTTTATT-CAACCATT--------CATT--------C----TCAGTAT---GTATATAGTATTTCTTCTATAAAGTGAC-ATTACTGAAAAAAAT--AATAAAA--TAATTTTTTCTATCTA-TTTGAAGCAATATATCAATATTTTAAATGACAGAGTGTAG-----att
gi|4 : cgctTT-ATAATT--GCTCTCTCATT-CAATCGTTT-------CATT--------C----TTA-----------------TTTCTCCTCTAATGTGAC-ATTACTGAAAAACAT----T---A--TATTTTTTCCTAACTA-TTTTAAGCAACGTATCAATATTTTAAATGACGGAGTGTAGA----AAA-AAAA--T--GTA------------G---GG----GAGTGG---GG----AGTTTGCCATGTGAGTTTAC-----TGTTTT-AACATATAT--TA------TGTGCATTTCATAC------TATTTGTGTGAACAC
gi|10 : CTCTCTCATTGCAGCTATC--------GATG--------AGGAATTGGTACTTCGTA-AT----TTTCTTCT-----------TTTTTTAGAAA--------T---A--TATTTTTTTCTGTCTA-TTTTAGGCAACATATCAATATTTTAAATGGCGGGGTGTAG-----AAA-AAAA--T--GTA------------G-GGAA----GAG-AG---GGGA--ATTTTGCCATGTGAGGTTACACATTTGTatt
gi|5 : T--------C----TTAATAT---GTATATAGTATTTCTTCTATAATGTGAC-ATTATTGAAAAAAAA--CAT-CAAAATATTTTTTTCTGTCTA-TTT-AGGCAATATATAAATATTTTAAATGACGGGGTGTAG-----AAA-AAAA--T--GTA------------GTG---------G-GG---GG----ATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|15 : --------C----TTAATAT---GTATATAGTATTTCTTCTATAATGTGAC-ATTATTGAAAAAAAA--CAT-CAAAATATTTTTTTCTGTCTA-TTT-AGGCAATATATCAATATTTTAAATGACGGGGTGTAG-----AAA-AAAA--T--Gatt
gi|12 : TATATATTATTTCTTCTATAATGCAAC-ATTAATGAAAAAAAC---AT-CAAAATATTTGTTTCTGTCTA-TTT-AGGCAATATATCAATATTTTAAATGACAGGGTGTAG------AA-AAAA--T--GTAAGGGGGGGGGGGGGGGGG----GGG-AG---AG----ATTTTGCAATGT--------ACATT--TTTCAAAC
gi|6 : TTCTATAATGTGAC-ATTATTGAAAAAAAC---AT-TAAAATATTTGTTTCTGTCTACTTT-AGGCAACATATCAATATTTCAAGGGACGGGGTGTAG-----AAAGAAAA--T--GTA------------G---GG----GAG-AG---GGGGGAATTTTGCCATGTGAGGTTACACATTTGTTTTAAA-ATAGATTATA------TG--CATTTCAAAC------TATTTGTGTGGATACtat
gi|9 : TATAATGTGAC-ATTAATGAAAAACAT--TA--AAA--TATTTTTCTCTTACTA-TTTTAGACAATGTATCAATATTTTAAATGATGGGTTGTA-------AG-AAAA--T--GTA------------G-G-GG----AGG-GG---GG----ATTTTGCTATGTGAGGTTACACATTTGTTTT-AACATACAT--TA------TGTACATTTCATAC------TATTTGTATAGATACattt
gi|20 : tgtATCAATATTTTAAATTACGGGGTGTAAATAATAGA-AAAA--TAAGCA------------GTAT----------------G----ATTTTGCCACACGA-GTTACACA-TTGT----AATA-G---TATA------TGTACA---TATAC-------ATTTGTGat
gi|17 : aGGGTGTAG-----AAA-AAAAAAT--GTA------------AGGGGG----TGG-GGT--GG----ATCTTGTCATGTGAGGTTAT-C-TTTGTTTTAAACATAGATTATAATATTATGTACATTTCAAAC------TATGTGTGTGGAT
gi|18 : acA-AAAACTT--GTA------------GGGTAGCCAGGGG-AGAGGGG----ATTTTGCCATGTGAGGTTACACTTTTGTTTC-AACATATAT--TA------TGTACATTTCATACTACATGTATTTGAGTGGATAtcatt
gi|21 : GG----GGG-GG---GG----ATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATACga
gi|22 : GG----GCG-GG---GG----ATTTTGCCATGTGAGATTACACATTTGTTTC-AACATAGAT--TA------TGTACATTTCAAAC------TATTTGTGTGGATACattt
Alignments
lowQualScore : 11111111 11111111111111 11111111 11 222222222 1111111 2222222222 11111 33333333333 1 111 22222222 11111111 2222222222222222 1 11 111111 111111
lowQualScore : 66 88888888 66 1 99999999999999 8 99 1 1 777 0 777 66666666 3 55 1 0 00 666 8 0 66 0 000000000 8888888 0 6666666666 22222 5 55555555555 1 0 99 6 111 6 44444444 6 88888888 1 2 1 8 0 7777 0 5 3 3 555 55 3333333333333333 555 44 3 6666 1 55 000000 1 000000
lowQualScore : .. ........ .. . .............. . .. . . ... . ... ........ . .. . . .. ... . . .. . ......... ....... . .......... ..... . ........... . . .. . ... . ........ . ........ . . . . . .... . . . . ... .. ................ ... .. . .... . .. ...... . ......
lowQualScore : 99 11111111 99 0 11111111111111 9 11 0 0 000 5 000 77777777 6 00 8 1 66 222 9 1 99 4 000000000 0000000 9 0000000000 55555 1 00000000000 4 3 22 7 777 7 22222222 7 11111111 7 5 8 0 7 2222 5 7 1 3 888 00 9999999999999999 444 22 1 5555 4 22 555555 0 555555
consensus : CTTTTTTT--T--------TT--TTTTCAG-----T--CA----C-CA-TTGGATGG---CCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATT--------CTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAAATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
Reference ( family-1074 ) : CTTTTTTT--T--------TT--TTTTNAG-----T--CA----C-CA-TTNGNTGG---CCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATT--------CTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTATTG-AAAAAAAT-ATNAAAATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
gi|1 : CTTTTTTT--T--------TT--TTTTGAA-----C--CA----C-CA-TTTGTTGG---TCCATTTA---TTCTCCCCTTC-------ATA-G--GTGTAAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAT--CGTACA---------AAAAG-CAT--GCAATTAT---------GAAGTA-----ATATATAAT-----------TATTATT-TTAGTT--AC-TCT---CTCATTCAAC-CA--------TT-CATT--------CTTAGTATGTATATACTATTTCTTCTATAATGTGACTTTATTA-AAAAAAATGATC--AATATTTTTTTCTGTCTA-TTTATGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------GTGT--GG---GG--GAG-G----GATTTTGCGATGTGAGGTTACACATTTGTTTTAAACATGGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|10 : T-AGAAATATATTTTTTTCTGTCTATTTTAGGCAACATATCAATATTTTAAATGGCGGGGTGTAG-AAA-A---AAA--TGTA----------G-GGAAGA---GA--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGT
gi|11 : ctctctcattgcagctatcgatgaggaattggtacttcgtaattttcttcttttttTCT--C--------TT--TATTTAGATACAT--CA----C-CA-ATTTATGA---CCCGTTTA---TTTTCCCCGCCATAAGTGATA-A--GTGTAAGAAGATC--G-G-GTAGGACCAACCT-ATTCACAG--CGTACATTATATAACAAAAA-TATTAACAATTGT---------GA---A-----ATATAAAAT-----------TATCA
gi|12 : taTATATATTATTTCTTCTATAATGCAACATTAATG-AAAAAAAC-ATCAAAATATTTGTTTCTGTCTATTT-AGGCAATATATCAATATTTTAAATGACAGGGTGTAG-AAA-A---AA---TGTAAGGGGGGGGGG-G---GG---GG--GGG-GGAGAGATTTTGCAATGT--------ACATT--TTTCAAACcagcgtgtacacttgtgctatca
gi|13 : TTTTT--T--------AT--TTTTCAG-----TTTCAAACTC-CA---AAGTGGAGTCCCATTTA---TTCTCCCCGTC-------TTATGCTGTGTAAGG-GGTC--GAG-G-AGAAACATC--CCCTCATACAGCTTACA---------ATAAG-TGC--ACA--TATAAAAGAGAAAAAGTA-----ATG-ATAACAA---------TATTATT-Ttat
gi|14 : TTTTTGT--T--------TTGGTTTTGAA--------CAT---C-CA-TTGGTCGG---CCTGTTTA---TTTTCCCCGAC-------ATA-G--GTGTGAAGAGGTA--G-A-G-GAGACCCTCTTCC
gi|15 : tgttgtcttttttttttttttttttttttttttttttttgtat--------CTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAAATATTTTTTTCTGTCTA-TTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TG
gi|16 : TTTTAA-----T--AA----C-CA-ATGGATGT---CCTGTTTTCTTTTCTCCCCGTC-------GCA-A--ATGCAAGGAGTTT--G-G-GGAGGATTACACTCCTTCACAC--CGTACA---------AAAAGACAT--ATAAACATA--------TAAATA-----CCATA
gi|17 : GGGTGTAG-AAA-A---AAAAATGTA----------A-G---GG---GGTGGGGTG----GATCTTGTCATGTGAGGTTAT-C-TTTGTTTTAAACATAGATTATAATATTATGTACATTTCAAAC------TATGTGTGTGGATa
gi|18 : acA----------G-G---GG---AG--AGG-G----GATTTTGCCATGTGAGGTTACACTTTTGTTTC-AACATATAT--TA------TGTACATTTCATACTACATGTATTTGAGTGGATAtcatt
gi|19 : aaaaacttgtagggtagccTTTTTTTGGT--------TT--TTTTCAG-----T--CAC---C-CATTTGGGTGA---CCCATTTG---TTGTCCCTGTC-------CTA-G--GTGTga
gi|2 : ttgtttttttggggCTTTTTTT--TCCTATTCTTT--TTTTGAA-----C--CA----C-CA-TTGGATGG---CCTGTTTA---TTCTCCATGTT-------GTA-G--GTGTGAGGAGTTCTGG-G-G-AGGTCCATCCTCCTTCACAC--TGTTCA---------AAAAG--A---ACAGTTGT---------GAAATATAGATATATATAATGTTATAGTTGATATTATT-ATAATA--GC-TCT---CTCTCTCAAT-CATTGAATCTTT-CATT--------CTTAGTATGTTTATATAAATTCTTCCATAATGTGATATTTATG-ACAAAAAT-TTAAAAAAAAATCT---TAACTATTTAAGGCAATGTATCAATATTTCAAATGATGGGGTGTAG-AAA-A---AAacagattatgctcctttgttacaccttgca
gi|20 : atttatttttttcctctccaaatcatgttATCAATATTTTAAATTACGGGGTGTAA-ATA-ATAGAAA--AATA----------------AG---CA--GTA-T----GATTTTGCCACACGA-GTTACACA-TTG---TA---ATAG--TATA------TGTACAT---ATAC-------ATTTGTGtaatagg
gi|21 : a---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|22 : -G---GG---GC--GGG-G----GATTTTGCCATGTGAGATTACACATTTGTTTC-AACATAGAT--TA------TGTACATTTCAAAC------TATTTGTGTGGATACattt
gi|23 : A-TTGGATGG---CCCTTTTA---TTCTCCCCATC-------AAA-G--GTGTGAGCAGGTCG-G-G-G-AGCACCGCCCTCCTTCAat
gi|25 : tT--T--------TT--TTTTCAG-----T--CA----CTCA-TTGTGTGA---CCCATTTA---TTCTCCCCATT-------CTA-G--GTaattgcagagaga
gi|3 : TC-------GTA-A--CTATAAAACAGTT--G-GTG-AGGACCACTAACCTTCACAC--TGTACA---------AAAA--CAA--ACAATTAT---------TAAGTT-----A-ATATAAT-----------TATTATTATTATTTTTGC-TCT---CTCATTCAAC-CA--------TT-CATTATTTCATTCTTAGTATGTATATAGTATTT-TTCTATAATGTGACATTGTTG-AAAA------------TATTTTTT-CTGACTTTTTTAGGCAATGAATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------A-G---GG---AG--TGG-G----GATTTTGACATGTTAGGTTACACATTTGTTTT-AACATATGT--TA------TGTATATTTCATAC------TATTTGTGTGGATAC
gi|4 : ttatTT-ATAATT--GC-TCT---CTCATTCAAT-CG--------TTTCATT--------CTTA--------------TTTCTCCTCTAATGTGACATTACTG-AAAAACAT--T----ATATTTTTTCCTAACTATTTTAAGCAACGTATCAATATTTTAAATGACGGAGTGTAGAAAA-A---AAA--TGTA----------G-G---GG---AG--TGG-G----GAGTTTGCCATGTGAGTTTAC-----TGTTTT-AACATATAT--TA------TGTGCATTTCATAC------TATTTGTGTGAACACatt
gi|5 : T--------CTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAAATATTTTTTTCTGTCTA-TTTAGGCAATATATAAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA-----------------G---TG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATACatt
gi|6 : TTCTATAATGTGACATTATTG-AAAAAAAC-ATTAAAATATTTGTTTCTGTCTACTTTAGGCAACATATCAATATTTCAAGGGACGGGGTGTAG-AAAGA---AAA--TGTA----------G-G---GGAGAGG--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGTTTTAAA-ATAGATTATA------TG--CATTTCAAAC------TATTTGTGTGGATACatt
gi|7 : CGC--TGTACA---------AAAAG-CAA--GCAATTAT---------TAAGTT-----ATATATAAT-----------AATTATT-TTAGCT--GC-TTT---TTTATTCAAC-CA--------TT-CATT--------CTCAGTATGTATATAGTATTTCTTCTATAAAGTGACATTACTG-AAAAAAAT-AATAAAATAATTTTTTCTATCTATTTGAAGCAATATATCAATATTTTAAATGACAGAGTGTAG-attt
gi|8 : TTTTTTT--T--------TT--TTTTCAG-----T--CA----CGCATTTGGATGA---CCCATTTA---TTCT-CCCGTC-------CTA-G--GTGTG-------C--G----------CATCCCCCTACACAC--C-T--------------------T--ACAGTTTC---------AAAATA-----A-ATATATT-----------TATTTTTATCAATA--GCATATAAAATAATTCGCCACA--------TT-CATT--------C
gi|9 : ttttttttttttataatattttttttttttTATAATGTGACATTAATG-AAAAA--C-ATTAAAATATTTTTCTCTTACTATTTTAGACAATGTATCAATATTTTAAATGATGGGTTGT---AAG-A---AAA--TGTA----------G-G---GG---AG--GGG-G----GATTTTGCTATGTGAGGTTACACATTTGTTTT-AACATACAT--TA------TGTACATTTCATAC------TATTTGTATAGATACatctttcat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGGTCCATTTATAGTCCCCATCATAAGTGTGATAGGGTCTAGGAGGATCACTCC
Alignments
lowQualScore : 11111111 11111111 1111 11 11111111 11 222222222 1111111 2222222222 11111 33333333333 1 111 44444444 1111111111111111 1 11 111111 111111
lowQualScore : 66 88888888 66 0 44444444 8888 8 33 1 0 777 66666666 3 55 1 0 00 666 8 0 66 0 000000000 8888888 0 6666666666 22222 5 55555555555 1 0 99 6 111 6 88888888 6 1 2 1 8 3 4 1 3 0 0 5 3 3 555 55 8888888888888888 555 44 3 6666 1 55 000000 1 000000
lowQualScore : .. ........ .. . ........ .... . .. . . ... ........ . .. . . .. ... . . .. . ......... ....... . .......... ..... . ........... . . .. . ... . ........ . . . . . . . . . . . . . . ... .. ................ ... .. . .... . .. ...... . ......
lowQualScore : 99 11111111 11 9 44444444 3333 9 55 4 5 000 77777777 6 00 8 1 66 222 9 1 99 4 000000000 0000000 9 0000000000 55555 1 00000000000 4 3 22 7 777 7 33333333 7 7 5 0 0 2 0 4 6 2 5 7 1 3 888 00 7777777777777777 444 22 1 5555 4 22 555555 0 555555
consensus : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
Reference ( family-1074 ) : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
gi|1 : CTTTTTTT--T--------TTT--TTTGAA-----C--CA----C-CA--TTTGTTGGTCCATTTA---TTCTCCCCTTC-------ATA-G--GTGTAAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAT--CGTACA---------AAAAG-CAT--GCAATTAT---------GAAGTA-----ATATATAAT-----------TATTATT-TTAGTT--AC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATACTATTTCTTCTATAATGTGACTTTATTA-AAAAAAATGATC--A-ATATTTTTTTCTGTCTA-TTTATGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------GTGT--GG---GG--GAG-G----GATTTTGCGATGTGAGGTTACACATTTGTTTTAAACATGGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|10 : AAATATATTTTTTTCTGTCTATTTTAGGCAACATATCAATATTTTAAATGGCGGGGTGTAG-AAA-A---AAA--TGTA----------G-GGAAGA---GA--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGT
gi|11 : ctctctcattgcagctatcgatgaggaattggtacttcgtaattttcttctttttttagTCT--C--------TTT--ATTTAGATACAT--CA----C-CA--ATTTATGACCCGTTTA---TTTTCCCCGCCATAAGTGATA-A--GTGTAAGAAGATC--G-G-GTAGGACCAACCT-ATTCACAG--CGTACATTATATAACAAAAA-TATTAACAATTGT---------GA---A-----ATATAAAAT-----------TATCA
gi|12 : taTATATATTATTTCTTCTATAATGCAACATTAATG-AAAAAAAC-ATCAAA-ATATTTGTTTCTGTCTATTT-AGGCAATATATCAATATTTTAAATGACAGGGTGTAG-AAA-A---AA---TGTAAGGGGGGGGGG-G---GG---GG--GGG-GGAGAGATTTTGCAATGT--------ACATT--TTTCAAACcagcgtgtacacttgtgctatca
gi|13 : TTTTT--T--------ATT--TTTCAG-----TTTCAAACTC-CAAAGTGGA-GTCCCATTTA---TTCTCCCCGTC-------TTATGCTGTGTAAGG-GGTC--GAG-G-AGAAACATC--CCCTCATACAGCTTACA---------ATAAG-TGC--ACA--TATAAAAGAGAAAAAGTA-----ATG-ATAACAA---------TATTATT-Ttat
gi|14 : TTTTTTG--T--------TTTGGTTTTGA-----A--CAT---C-CA--TTGGTCGGCCTGTTTA---TTTTCCCCGAC-------ATA-G--GTGTGAAGAGGTA--G-A-G-GAGACCCTCTTCC
gi|15 : tgttgtcttttttttttttttttttttttttttttttttgtaCTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTA-TTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TG
gi|16 : --TTTTAA-----T--AA----C-CA--ATGGATGTCCTGTTTTCTTTTCTCCCCGTC-------GCA-A--ATGCAAGGAGTTT--G-G-GGAGGATTACACTCCTTCACAC--CGTACA---------AAAAGACAT--ATAAACATA--------TAAATA-----CCATA
gi|17 : GGGTGTAG-AAA-A---AAAAATGTA----------A-G---GG---GGTGGGGTG----GATCTTGTCATGTGAGGTTAT-C-TTTGTTTTAAACATAGATTATAATATTATGTACATTTCAAAC------TATGTGTGTGGATa
gi|18 : acA----------G-G---GG---AG--AGG-G----GATTTTGCCATGTGAGGTTACACTTTTGTTTC-AACATATAT--TA------TGTACATTTCATACTACATGTATTTGAGTGGATAtcatt
gi|19 : aaaaacttgtagggtagccTTTTTTTGGT--------TTT--TTTCAG-----T--CAC---C-CAT-TTGGGTGACCCATTTG---TTGTCCCTGTC-------CTA-G--GTGTga
gi|2 : ttgtttttttggggCTTTTTTT--TCCTATTCTTTT--TTTGAA-----C--CA----C-CA--TTGGATGGCCTGTTTA---TTCTCCATGTT-------GTA-G--GTGTGAGGAGTTCTGG-G-G-AGGTCCATCCTCCTTCACAC--TGTTCA---------AAAAG--A---ACAGTTGT---------GAAATATAGATATATATAATGTTATAGTTGATATTATT-ATAATA--GC-TCT---CTCTCTCAAT-CATTGAATCTTT-CATTCTTAGTATGTTTATATAAATTCTTCCATAATGTGATATTTATG-ACAAAAAT-TTAAAA-AAAAATCT---TAACTATTTAAGGCAATGTATCAATATTTCAAATGATGGGGTGTAG-AAA-A---AAacagattatgctcctttgttacaccttgca
gi|20 : atttatttttttcctctccaaatcatgttATCAATATTTTAAATTACGGGGTGTAA-ATA-ATAGAAA--AATA----------A-G---CA---GT--ATG-------ATTTTGCCACACGA-GTTACACA-TTG---TA---ATAG--TATA------TGTACAT---ATAC-------ATTTGTGtaatagg
gi|21 : a---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|22 : -G---GG---GC--GGG-G----GATTTTGCCATGTGAGATTACACATTTGTTTC-AACATAGAT--TA------TGTACATTTCAAAC------TATTTGTGTGGATACattt
gi|23 : A--TTGGATGGCCCTTTTA---TTCTCCCCATC-------AAA-G--GTGTGAGCAGGTCG-G-G-G-AGCACCGCCCTCCTTCAat
gi|25 : tT--T--------TTT--TTTCAG-----T--CA----CTCA--TTGTGTGACCCATTTA---TTCTCCCCATT-------CTA-G--GTaattgcagagaga
gi|3 : TC-------GTA-A--CTATAAAACAGTT--G-GTG-AGGACCACTAACCTTCACAC--TGTACA---------AAAA--CAA--ACAATTAT---------TAAGTT-----A-ATATAAT-----------TATTATTATTATTTTTGC-TCT---CTCATTCAAC-CATTCATTATTT-CATTCTTAGTATGTATATAGTATTT-TTCTATAATGTGACATTGTTG-------------AAA-ATA-TTTTTTCTGACTTTTTTAGGCAATGAATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------A-G---GG---AG--TGG-G----GATTTTGACATGTTAGGTTACACATTTGTTTT-AACATATGT--TA------TGTATATTTCATAC------TATTTGTGTGGATAC
gi|4 : ttatTT-ATAATT--GC-TCT---CTCATTCAAT-CG--------TTTCATTCTTA--------------TTTCTCCTCTAATGTGACATTACTG-AAAAA--C-ATTA----TATTTTTTCCTAACTATTTTAAGCAACGTATCAATATTTTAAATGACGGAGTGTAGAAAA-A---AAA--TGTA----------G-G---GG---AG--TGG-G----GAGTTTGCCATGTGAGTTTAC-----TGTTTT-AACATATAT--TA------TGTGCATTTCATAC------TATTTGTGTGAACACatt
gi|5 : TCTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTA-TTTAGGCAATATATAAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA-----------------G---TG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATACatt
gi|6 : TTCTATAATGTGACATTATTG-AAAAAAAC-ATTAAA-ATATTTGTTTCTGTCTACTTTAGGCAACATATCAATATTTCAAGGGACGGGGTGTAG-AAAGA---AAA--TGTA----------G-G---GGAGAGG--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGTTTTAAA-ATAGATTATA------TG--CATTTCAAAC------TATTTGTGTGGATACatt
gi|7 : CGC--TGTACA---------AAAAG-CAA--GCAATTAT---------TAAGTT-----ATATATAAT-----------AATTATT-TTAGCT--GC-TTT---TTTATTCAAC-CA--------TT-CATTCTCAGTATGTATATAGTATTTCTTCTATAAAGTGACATTACTG-AAAAAAAT-AATAAA-ATAATTTTTTCTATCTATTTGAAGCAATATATCAATATTTTAAATGACAGAGTGTAG-attt
gi|8 : TTTTTTT--T--------TTT--TTTCAG-----T--CA----CGCAT-TTGGATGACCCATTTA---TTCT-CCCGTC-------CTA-G--GTGTG-------C--G----------CATCCCCCTACACAC--C-T--------------------T--ACAGTTTC---------AAAATA-----A-ATATATT-----------TATTTTTATCAATA--GCATATAAAATAATTCGCCACA--------TT-CATTC
gi|9 : ttttttttttttataatattttttttttttTATAATGTGACATTAATG-AAAAA--C-ATTAAA-ATATTTTTCTCTTACTATTTTAGACAATGTATCAATATTTTAAATGATGGGTTGT---AAG-A---AAA--TGTA----------G-G---GG---AG--GGG-G----GATTTTGCTATGTGAGGTTACACATTTGTTTT-AACATACAT--TA------TGTACATTTCATAC------TATTTGTATAGATACatctttcat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGGTCCATTTATAGTCCCCATCATAAGTGTGATAGGGTCTAGGAGGATCACTCC
Alignments
lowQualScore : 11111111 11111111 1111 11 11111111 11 222222222 1111111 2222222222 11111 33333333333 1 111 44444444 1111111111111111 1 11 111111 111111
lowQualScore : 66 88888888 66 0 44444444 8888 8 33 1 0 777 66666666 3 55 1 0 00 666 8 0 66 0 000000000 8888888 0 6666666666 22222 5 55555555555 1 0 99 6 111 6 88888888 6 1 2 1 8 3 4 1 3 0 0 5 3 3 555 55 8888888888888888 555 44 3 6666 1 55 000000 1 000000
lowQualScore : .. ........ .. . ........ .... . .. . . ... ........ . .. . . .. ... . . .. . ......... ....... . .......... ..... . ........... . . .. . ... . ........ . . . . . . . . . . . . . . ... .. ................ ... .. . .... . .. ...... . ......
lowQualScore : 99 11111111 11 9 44444444 3333 9 55 4 5 000 77777777 6 00 8 1 66 222 9 1 99 4 000000000 0000000 9 0000000000 55555 1 00000000000 4 3 22 7 777 7 33333333 7 7 5 0 0 2 0 4 6 2 5 7 1 3 888 00 7777777777777777 444 22 1 5555 4 22 555555 0 555555
consensus : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
Reference ( family-1074 ) : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
gi|1 : CTTTTTTT--T--------TTT--TTTGAA-----C--CA----C-CA--TTTGTTGGTCCATTTA---TTCTCCCCTTC-------ATA-G--GTGTAAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAT--CGTACA---------AAAAG-CAT--GCAATTAT---------GAAGTA-----ATATATAAT-----------TATTATT-TTAGTT--AC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATACTATTTCTTCTATAATGTGACTTTATTA-AAAAAAATGATC--A-ATATTTTTTTCTGTCTA-TTTATGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------GTGT--GG---GG--GAG-G----GATTTTGCGATGTGAGGTTACACATTTGTTTTAAACATGGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|10 : AAATATATTTTTTTCTGTCTATTTTAGGCAACATATCAATATTTTAAATGGCGGGGTGTAG-AAA-A---AAA--TGTA----------G-GGAAGA---GA--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGT
gi|11 : ctctctcattgcagctatcgatgaggaattggtacttcgtaattttcttctttttttagTCT--C--------TTT--ATTTAGATACAT--CA----C-CA--ATTTATGACCCGTTTA---TTTTCCCCGCCATAAGTGATA-A--GTGTAAGAAGATC--G-G-GTAGGACCAACCT-ATTCACAG--CGTACATTATATAACAAAAA-TATTAACAATTGT---------GA---A-----ATATAAAAT-----------TATCA
gi|12 : taTATATATTATTTCTTCTATAATGCAACATTAATG-AAAAAAAC-ATCAAA-ATATTTGTTTCTGTCTATTT-AGGCAATATATCAATATTTTAAATGACAGGGTGTAG-AAA-A---AA---TGTAAGGGGGGGGGG-G---GG---GG--GGG-GGAGAGATTTTGCAATGT--------ACATT--TTTCAAACcagcgtgtacacttgtgctatca
gi|13 : TTTTT--T--------ATT--TTTCAG-----TTTCAAACTC-CAAAGTGGA-GTCCCATTTA---TTCTCCCCGTC-------TTATGCTGTGTAAGG-GGTC--GAG-G-AGAAACATC--CCCTCATACAGCTTACA---------ATAAG-TGC--ACA--TATAAAAGAGAAAAAGTA-----ATG-ATAACAA---------TATTATT-Ttat
gi|14 : TTTTTTG--T--------TTTGGTTTTGA-----A--CAT---C-CA--TTGGTCGGCCTGTTTA---TTTTCCCCGAC-------ATA-G--GTGTGAAGAGGTA--G-A-G-GAGACCCTCTTCC
gi|15 : tgttgtcttttttttttttttttttttttttttttttttgtaCTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTA-TTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TG
gi|16 : --TTTTAA-----T--AA----C-CA--ATGGATGTCCTGTTTTCTTTTCTCCCCGTC-------GCA-A--ATGCAAGGAGTTT--G-G-GGAGGATTACACTCCTTCACAC--CGTACA---------AAAAGACAT--ATAAACATA--------TAAATA-----CCATA
gi|17 : GGGTGTAG-AAA-A---AAAAATGTA----------A-G---GG---GGTGGGGTG----GATCTTGTCATGTGAGGTTAT-C-TTTGTTTTAAACATAGATTATAATATTATGTACATTTCAAAC------TATGTGTGTGGATa
gi|18 : acA----------G-G---GG---AG--AGG-G----GATTTTGCCATGTGAGGTTACACTTTTGTTTC-AACATATAT--TA------TGTACATTTCATACTACATGTATTTGAGTGGATAtcatt
gi|19 : aaaaacttgtagggtagccTTTTTTTGGT--------TTT--TTTCAG-----T--CAC---C-CAT-TTGGGTGACCCATTTG---TTGTCCCTGTC-------CTA-G--GTGTga
gi|2 : ttgtttttttggggCTTTTTTT--TCCTATTCTTTT--TTTGAA-----C--CA----C-CA--TTGGATGGCCTGTTTA---TTCTCCATGTT-------GTA-G--GTGTGAGGAGTTCTGG-G-G-AGGTCCATCCTCCTTCACAC--TGTTCA---------AAAAG--A---ACAGTTGT---------GAAATATAGATATATATAATGTTATAGTTGATATTATT-ATAATA--GC-TCT---CTCTCTCAAT-CATTGAATCTTT-CATTCTTAGTATGTTTATATAAATTCTTCCATAATGTGATATTTATG-ACAAAAAT-TTAAAA-AAAAATCT---TAACTATTTAAGGCAATGTATCAATATTTCAAATGATGGGGTGTAG-AAA-A---AAacagattatgctcctttgttacaccttgca
gi|20 : atttatttttttcctctccaaatcatgttATCAATATTTTAAATTACGGGGTGTAA-ATA-ATAGAAA--AATA----------A-G---CA---GT--ATG-------ATTTTGCCACACGA-GTTACACA-TTG---TA---ATAG--TATA------TGTACAT---ATAC-------ATTTGTGtaatagg
gi|21 : a---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|22 : -G---GG---GC--GGG-G----GATTTTGCCATGTGAGATTACACATTTGTTTC-AACATAGAT--TA------TGTACATTTCAAAC------TATTTGTGTGGATACattt
gi|23 : A--TTGGATGGCCCTTTTA---TTCTCCCCATC-------AAA-G--GTGTGAGCAGGTCG-G-G-G-AGCACCGCCCTCCTTCAat
gi|25 : tT--T--------TTT--TTTCAG-----T--CA----CTCA--TTGTGTGACCCATTTA---TTCTCCCCATT-------CTA-G--GTaattgcagagaga
gi|3 : TC-------GTA-A--CTATAAAACAGTT--G-GTG-AGGACCACTAACCTTCACAC--TGTACA---------AAAA--CAA--ACAATTAT---------TAAGTT-----A-ATATAAT-----------TATTATTATTATTTTTGC-TCT---CTCATTCAAC-CATTCATTATTT-CATTCTTAGTATGTATATAGTATTT-TTCTATAATGTGACATTGTTG-------------AAA-ATA-TTTTTTCTGACTTTTTTAGGCAATGAATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------A-G---GG---AG--TGG-G----GATTTTGACATGTTAGGTTACACATTTGTTTT-AACATATGT--TA------TGTATATTTCATAC------TATTTGTGTGGATAC
gi|4 : ttatTT-ATAATT--GC-TCT---CTCATTCAAT-CG--------TTTCATTCTTA--------------TTTCTCCTCTAATGTGACATTACTG-AAAAA--C-ATTA----TATTTTTTCCTAACTATTTTAAGCAACGTATCAATATTTTAAATGACGGAGTGTAGAAAA-A---AAA--TGTA----------G-G---GG---AG--TGG-G----GAGTTTGCCATGTGAGTTTAC-----TGTTTT-AACATATAT--TA------TGTGCATTTCATAC------TATTTGTGTGAACACatt
gi|5 : TCTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTA-TTTAGGCAATATATAAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA-----------------G---TG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATACatt
gi|6 : TTCTATAATGTGACATTATTG-AAAAAAAC-ATTAAA-ATATTTGTTTCTGTCTACTTTAGGCAACATATCAATATTTCAAGGGACGGGGTGTAG-AAAGA---AAA--TGTA----------G-G---GGAGAGG--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGTTTTAAA-ATAGATTATA------TG--CATTTCAAAC------TATTTGTGTGGATACatt
gi|7 : CGC--TGTACA---------AAAAG-CAA--GCAATTAT---------TAAGTT-----ATATATAAT-----------AATTATT-TTAGCT--GC-TTT---TTTATTCAAC-CA--------TT-CATTCTCAGTATGTATATAGTATTTCTTCTATAAAGTGACATTACTG-AAAAAAAT-AATAAA-ATAATTTTTTCTATCTATTTGAAGCAATATATCAATATTTTAAATGACAGAGTGTAG-attt
gi|8 : TTTTTTT--T--------TTT--TTTCAG-----T--CA----CGCAT-TTGGATGACCCATTTA---TTCT-CCCGTC-------CTA-G--GTGTG-------C--G----------CATCCCCCTACACAC--C-T--------------------T--ACAGTTTC---------AAAATA-----A-ATATATT-----------TATTTTTATCAATA--GCATATAAAATAATTCGCCACA--------TT-CATTC
gi|9 : ttttttttttttataatattttttttttttTATAATGTGACATTAATG-AAAAA--C-ATTAAA-ATATTTTTCTCTTACTATTTTAGACAATGTATCAATATTTTAAATGATGGGTTGT---AAG-A---AAA--TGTA----------G-G---GG---AG--GGG-G----GATTTTGCTATGTGAGGTTACACATTTGTTTT-AACATACAT--TA------TGTACATTTCATAC------TATTTGTATAGATACatctttcat
blockSeqs : GG CCTATTCT GG ATACAT AACT T AA A CTT ATAAGTGA T CT A TG AG T AG TTATATAAC ATATTA AAAAGAGAAA TAGAT T GTTATAGTTGA A TT A AAA A TTGAATCT T A T A A A . C T T A G TAG AA AGGGGGGGGGGG AGA TG T GAGA A TA ATATTA A TACATG
blockSeqs : . . . TTT T G T T . T . . A G GT G . . GACAT AT . T AA A . . . . TTCATTAT . G G T A A . C . T . . . . GGGAA . . . . A TA . T .
blockSeqs : . . . A C . T G . A . . A . G . . . GTGC G . C . . . . . . . . G T A . A . A . T . . . . AG . . . . A TA . T .
blockSeqs : . . . T . . . T . G . . A . A . . . GCAA G . T . . . . . . . . A G T . A . T . T . . . . GG . . . . A TA . A .
blockSeqs : . . . T . . . A . C . . A . G . . . CAA T . T . . . . . . . . G G C . A . C . T . . . . AG . . . . A TA . A .
blockSeqs : . . . C . . . G . G . . C . G . . . GA T . . . . . G T . A . T . C . . . . AG . . . . A . . T .
blockSeqs : . . . T . . . G . A . . . . G . . . T A . . . T . . . T . T . . . . GG . . . . . . . T .
blockSeqs : . T . . . A . C . . . . . . C . . . T . T . . . . GG . . . . . . . A .
blockSeqs : . A . G . . A . . . . . . . . . . GG . . . . . . . A .
blockSeqs : C . . . . . . . . . . . . . . . . T .
blockSeqs : . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : GG************** TA
originalCons : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
finalCons : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTAGG--------------GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGGTCCATTTATAGTCCCCATCATAAGTGTGATAGGGTCTAGGAGGATCACTCC
Alignments
lowQualScore : 11111111 11111111 1111 11 11111111 11 222222222 1111111 2222222222 11111 33333333333 1 111 44444444 1111111111111111 1 11 111111 111111
lowQualScore : 66 88888888 66 0 44444444 8888 8 33 1 0 777 66666666 3 55 1 0 00 666 8 0 66 0 000000000 8888888 0 6666666666 22222 5 55555555555 1 0 99 6 111 6 88888888 6 1 2 1 8 3 4 1 3 0 0 5 3 3 555 55 8888888888888888 555 44 3 6666 1 55 000000 1 000000
lowQualScore : .. ........ .. . ........ .... . .. . . ... ........ . .. . . .. ... . . .. . ......... ....... . .......... ..... . ........... . . .. . ... . ........ . . . . . . . . . . . . . . ... .. ................ ... .. . .... . .. ...... . ......
lowQualScore : 99 11111111 11 9 44444444 3333 9 55 4 5 000 77777777 6 00 8 1 66 222 9 1 99 4 000000000 0000000 9 0000000000 55555 1 00000000000 4 3 22 7 777 7 33333333 7 7 5 0 0 2 0 4 6 2 5 7 1 3 888 00 7777777777777777 444 22 1 5555 4 22 555555 0 555555
consensus : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
Reference ( family-1074 ) : CTTTTTTT--T--------TTT--TTTCAG-----T--CA----C-CA--TTGGATGGCCCGTTTA---TTCTCCCCGTC-------GTA-G--GTGTGAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAC--CGTACA---------AAAAG-CAT--ACAATTAT---------NAAGTA-----ATATATAAT-----------TATTATT-TTAATT--GC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATAGTATTTCTTCTATAATGTGACATTANTG-AAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTATTTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------G-G---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTCANAC------TATTTGTGTGGATAC
gi|1 : CTTTTTTT--T--------TTT--TTTGAA-----C--CA----C-CA--TTTGTTGGTCCATTTA---TTCTCCCCTTC-------ATA-G--GTGTAAGGAGGTC--G-G-G-AGGACCACCCTCCTTCACAT--CGTACA---------AAAAG-CAT--GCAATTAT---------GAAGTA-----ATATATAAT-----------TATTATT-TTAGTT--AC-TCT---CTCATTCAAC-CA--------TT-CATTCTTAGTATGTATATACTATTTCTTCTATAATGTGACTTTATTA-AAAAAAATGATC--A-ATATTTTTTTCTGTCTA-TTTATGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------GTGT--GG---GG--GAG-G----GATTTTGCGATGTGAGGTTACACATTTGTTTTAAACATGGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|10 : AAATATATTTTTTTCTGTCTATTTTAGGCAACATATCAATATTTTAAATGGCGGGGTGTAG-AAA-A---AAA--TGTA----------G-GGAAGA---GA--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGT
gi|11 : ctctctcattgcagctatcgatgaggaattggtacttcgtaattttcttctttttttagTCT--C--------TTT--ATTTAGATACAT--CA----C-CA--ATTTATGACCCGTTTA---TTTTCCCCGCCATAAGTGATA-A--GTGTAAGAAGATC--G-G-GTAGGACCAACCT-ATTCACAG--CGTACATTATATAACAAAAA-TATTAACAATTGT---------GA---A-----ATATAAAAT-----------TATCA
gi|12 : taTATATATTATTTCTTCTATAATGCAACATTAATG-AAAAAAAC-ATCAAA-ATATTTGTTTCTGTCTATTT-AGGCAATATATCAATATTTTAAATGACAGGGTGTAG-AAA-A---AA---TGTAAGGGGGGGGGG-G---GG---GG--GGG-GGAGAGATTTTGCAATGT--------ACATT--TTTCAAACcagcgtgtacacttgtgctatca
gi|13 : TTTTT--T--------ATT--TTTCAG-----TTTCAAACTC-CAAAGTGGA-GTCCCATTTA---TTCTCCCCGTC-------TTATGCTGTGTAAGG-GGTC--GAG-G-AGAAACATC--CCCTCATACAGCTTACA---------ATAAG-TGC--ACA--TATAAAAGAGAAAAAGTA-----ATG-ATAACAA---------TATTATT-Ttat
gi|14 : TTTTTTG--T--------TTTGGTTTTGA-----A--CAT---C-CA--TTGGTCGGCCTGTTTA---TTTTCCCCGAC-------ATA-G--GTGTGAAGAGGTA--G-A-G-GAGACCCTCTTCC
gi|15 : tgttgtcttttttttttttttttttttttttttttttttgtaCTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTA-TTTAGGCAATATATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TG
gi|16 : --TTTTAA-----T--AA----C-CA--ATGGATGTCCTGTTTTCTTTTCTCCCCGTC-------GCA-A--ATGCAAGGAGTTT--G-G-GGAGGATTACACTCCTTCACAC--CGTACA---------AAAAGACAT--ATAAACATA--------TAAATA-----CCATA
gi|17 : GGGTGTAG-AAA-A---AAAAATGTA----------A-G---GG---GGTGGGGTG----GATCTTGTCATGTGAGGTTAT-C-TTTGTTTTAAACATAGATTATAATATTATGTACATTTCAAAC------TATGTGTGTGGATa
gi|18 : acA----------G-G---GG---AG--AGG-G----GATTTTGCCATGTGAGGTTACACTTTTGTTTC-AACATATAT--TA------TGTACATTTCATACTACATGTATTTGAGTGGATAtcatt
gi|19 : aaaaacttgtagggtagccTTTTTTTGGT--------TTT--TTTCAG-----T--CAC---C-CAT-TTGGGTGACCCATTTG---TTGTCCCTGTC-------CTA-G--GTGTga
gi|2 : ttgtttttttggggCTTTTTTT--TCCTATTCTTTT--TTTGAA-----C--CA----C-CA--TTGGATGGCCTGTTTA---TTCTCCATGTT-------GTA-G--GTGTGAGGAGTTCTGG-G-G-AGGTCCATCCTCCTTCACAC--TGTTCA---------AAAAG--A---ACAGTTGT---------GAAATATAGATATATATAATGTTATAGTTGATATTATT-ATAATA--GC-TCT---CTCTCTCAAT-CATTGAATCTTT-CATTCTTAGTATGTTTATATAAATTCTTCCATAATGTGATATTTATG-ACAAAAAT-TTAAAA-AAAAATCT---TAACTATTTAAGGCAATGTATCAATATTTCAAATGATGGGGTGTAG-AAA-A---AAacagattatgctcctttgttacaccttgca
gi|20 : atttatttttttcctctccaaatcatgttATCAATATTTTAAATTACGGGGTGTAA-ATA-ATAGAAA--AATA----------A-G---CA---GT--ATG-------ATTTTGCCACACGA-GTTACACA-TTG---TA---ATAG--TATA------TGTACAT---ATAC-------ATTTGTGtaatagg
gi|21 : a---GG---GG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATAC
gi|22 : -G---GG---GC--GGG-G----GATTTTGCCATGTGAGATTACACATTTGTTTC-AACATAGAT--TA------TGTACATTTCAAAC------TATTTGTGTGGATACattt
gi|23 : A--TTGGATGGCCCTTTTA---TTCTCCCCATC-------AAA-G--GTGTGAGCAGGTCG-G-G-G-AGCACCGCCCTCCTTCAat
gi|25 : tT--T--------TTT--TTTCAG-----T--CA----CTCA--TTGTGTGACCCATTTA---TTCTCCCCATT-------CTA-G--GTaattgcagagaga
gi|3 : TC-------GTA-A--CTATAAAACAGTT--G-GTG-AGGACCACTAACCTTCACAC--TGTACA---------AAAA--CAA--ACAATTAT---------TAAGTT-----A-ATATAAT-----------TATTATTATTATTTTTGC-TCT---CTCATTCAAC-CATTCATTATTT-CATTCTTAGTATGTATATAGTATTT-TTCTATAATGTGACATTGTTG-------------AAA-ATA-TTTTTTCTGACTTTTTTAGGCAATGAATCAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA----------A-G---GG---AG--TGG-G----GATTTTGACATGTTAGGTTACACATTTGTTTT-AACATATGT--TA------TGTATATTTCATAC------TATTTGTGTGGATAC
gi|4 : ttatTT-ATAATT--GC-TCT---CTCATTCAAT-CG--------TTTCATTCTTA--------------TTTCTCCTCTAATGTGACATTACTG-AAAAA--C-ATTA----TATTTTTTCCTAACTATTTTAAGCAACGTATCAATATTTTAAATGACGGAGTGTAGAAAA-A---AAA--TGTA----------G-G---GG---AG--TGG-G----GAGTTTGCCATGTGAGTTTAC-----TGTTTT-AACATATAT--TA------TGTGCATTTCATAC------TATTTGTGTGAACACatt
gi|5 : TCTTAATATGTATATAGTATTTCTTCTATAATGTGACATTATTGAAAAAAAAC-ATCAAA-ATATTTTTTTCTGTCTA-TTTAGGCAATATATAAATATTTTAAATGACGGGGTGTAG-AAA-A---AAA--TGTA-----------------G---TG--GGG-G----GATTTTGCCATGTGAGGTTACACATTTGTTTTAAACATAGATTATA------TGTACATTTTAAAC------TATTTGTGTGGATACatt
gi|6 : TTCTATAATGTGACATTATTG-AAAAAAAC-ATTAAA-ATATTTGTTTCTGTCTACTTTAGGCAACATATCAATATTTCAAGGGACGGGGTGTAG-AAAGA---AAA--TGTA----------G-G---GGAGAGG--GGG-G----AATTTTGCCATGTGAGGTTACACATTTGTTTTAAA-ATAGATTATA------TG--CATTTCAAAC------TATTTGTGTGGATACatt
gi|7 : CGC--TGTACA---------AAAAG-CAA--GCAATTAT---------TAAGTT-----ATATATAAT-----------AATTATT-TTAGCT--GC-TTT---TTTATTCAAC-CA--------TT-CATTCTCAGTATGTATATAGTATTTCTTCTATAAAGTGACATTACTG-AAAAAAAT-AATAAA-ATAATTTTTTCTATCTATTTGAAGCAATATATCAATATTTTAAATGACAGAGTGTAG-attt
gi|8 : TTTTTTT--T--------TTT--TTTCAG-----T--CA----CGCAT-TTGGATGACCCATTTA---TTCT-CCCGTC-------CTA-G--GTGTG-------C--G----------CATCCCCCTACACAC--C-T--------------------T--ACAGTTTC---------AAAATA-----A-ATATATT-----------TATTTTTATCAATA--GCATATAAAATAATTCGCCACA--------TT-CATTC
gi|9 : ttttttttttttataatattttttttttttTATAATGTGACATTAATG-AAAAA--C-ATTAAA-ATATTTTTCTCTTACTATTTTAGACAATGTATCAATATTTTAAATGATGGGTTGT---AAG-A---AAA--TGTA----------G-G---GG---AG--GGG-G----GATTTTGCTATGTGAGGTTACACATTTGTTTT-AACATACAT--TA------TGTACATTTCATAC------TATTTGTATAGATACatctttcat
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|24 ): TGGTCCATTTATAGTCCCCATCATAAGTGTGATAGGGTCTAGGAGGATCACTCC