lowQualScore : 33333333333333 1111 55555555555555555555555555555555 22222 11
lowQualScore : 6 99999999999999 9999 5 22222222222222222222222222222222 2 7777 2 33 2 4 4 4 55555 3 3 4 22222 44 00
lowQualScore : . .............. .... . ................................ . .... . .. . . . . ..... . . . ..... .. ..
lowQualScore : 1 55555555555555 6666 1 77777777777777777777777777777777 2 8888 2 11 2 3 7 6 33333 6 6 6 33333 66 00
consensus : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTTAGT---TGTTGCTGGTTAACTTG-TCT--T--GT----ATT-TT--TT-TA--ATACTGAACA-TG----TGT-TG--TAAC-CATGAGTGCAACATTTTTT-CACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--C--AT--G--TTTCGCAA
Reference ( gi|9 ) : TGCTATGCATTGCACACATTG--------------TCACTCAGCCTACCCATCTGTTAGA---TGCTGCTGGTTAACTTG-ACT--T--G-----ATT-TA--TT-TA--ACACTGAACA-TG----TGT-TG--TAAC-CACGAGTGCAACATTTTTT-CATGTGCAATTCATGATAGGCTGA-GA--GCAGACAAAT--C--AT--G--TTTTGCAA
gi|17 : TGCTATGCATTGCACTCATTG--------------TCACTCAGACTACACGTCTGTTAGT---TGTTGCTGGTTAAGTTG-TCTTGT--G-----ATT-T---TT-T---ATACTGAACA-TG----TGT-TG--TAAC-CGTAAGTGCAACATTTATT-CACGTGTTATTCA
gi|6 : gcTGCCATGCATTGCACGCATCGCATTACACG-----TCACCCGGCCTACCCATCTGTTAGT---TGTTGCTGGTTACCTTG-TCTTGT--G-----ATG-T---TT-TT--ATTCTGAACA-TGCA--TGTATGGTTA---CATGCATGTAACA-TTGTT-CACGTGCAATTCAAGATAGGCCAA-GA--GCAGGCAAAT--C--GT--ACTTTTTGCAA
gi|2 : TGCTATGCATTGCAGGCATTGCATGACATGCAACTTCACTCGGCCTGCCCGGCTGTTAGT---TTTTGCTGGTTAACTTA-TCTTGT--G-----ATT-GT--TT-TAT-ATACTGAACA-TGTGACTGT-TG--TAAT-CATGAGTGTAACA-TTTTT-CACGTGCAATTCATGATCGGATGATGT--G-GGGCGAAT--T--GTAAG--TTTCGCAA
gi|10 : ggcTGCTATGTTTTGCATACATCC--------------TCACTGGGCCTACACATTTGTTAGT---TTTTGATGGTTAACTGG-TCTCAT--GTT---TTT-TAATTT-TT--ATGCTGAAAA-TG----TGT-TG--T--------AGT----CATGTTTT-CATGTGCAATTCAGTATTGGCTGA-TA--GCTGGCGAAT--C--AT--A--ta
gi|11 : ggcGCTATGGGTTGCTCACATTG--------------TCACTCAGCCTACCCATTTGTTAAT---TGTTGCTGGTTAACTTGTCCT--T--G-----ATT-GT--TT-TT--ATAATGAACA-TG----TGT-TG--TAAT-CATGAGTGCAACATTTTTT-CACATGTAATTCATAACAGGCCGA-AT--GCAGAGAAAT--gt
gi|5 : GCAATGCATTGCACGTATCA--------------TCACTCGGCCTACCCATCTGTTAGT---TGTTGCTGGTTGACTTG-TCCTGT--G-----ATT-TT--TTGTAT-ATACT------TG----TGA-TG--TAAC-CATGAGTGCAACtgta
gi|3 : gggctgttatgtattgtatttcccTGTATTGCACGCATCG--------------TCACTCAGCCTACCCAACTGTTATT---TGTTGCTGGTCAACGTG-TCT--T--GTG---ATT-GT--TT-TT--ATACTGAACA-AG----TGC-TG--AAAT-CATGAGTGCAACATTTTTT-CACGTGCAGTGCATGAGAAGCTGA-GG--GTGGGCGAATGGT--AT--G--TTTCGCAAgatgaaattggatatgcaatgctaatggtgcaaaatgtgagttctacagta
gi|8 : gggctgctatgcattgtacccatTGGATGGCACCCGTCA--------------TTACTCCGCCTACCCATCTATTGTAATTTGTTGCTGGTTAACTTG-TCT--T--GTG---ATT-CT--TT-TA--ATGCTAAAAA-TG----TGC-TG--TAAC-CATGAGAGCAACATTTTTT-CATGCACAATTCATGATAGGCCCA-AA--GCGGGTGAATTAT--AT--G--TTTT-CAAta
gi|7 : GCGTTCCACTC-TTG---------------CGTTAAGCCTATCCATCTGTTTGT---TGTTGCTGGTTAACTTG-TTT--TCTG-----ATA-TT--TT-TA---TACTAAACA-TG----CAC-TA--TAAT-CAAGGGTACACTATTTTTT-CACATGCAATTCATGATAat
gi|18 : gttaacgcatggcatggatcaccgctctcactttatcttgtggaaaaCATCG--------------CCATTCTGCCTACCGATCTGTTTGT---TGTTTTTGGTTAATT-------------------------------------------TG----TCT-TG--TGATTCATGAGTGCAACATTTTTT-CACGAGTAATTCATGATAG--TAA-GAACGCAGATGAATTGC--AT--A--TTTCGCAA
gi|12 : CACTCAGCCTACACATCTGTCAGT---TGTTGCTGGTTAAGTTA-TGT--T--G-----TTA-TG--TT-TGTTATACTGAACAATG----TGT-TG--TAAC-CATGAGTGAAAGATATTTT-CCCGTGCAATACATGATAAGCCAA-CA--GCGGGCGAATTGT--AT--G--TTTtact
gi|13 : CTCAGCCTTTTCATCCGTTAGT---TGTTGCTAGTTTACTTG-ACT--T--GTG---ATT-TT--TT-TAT-ACA--GAACA-TG----TGT-TG--TAAC-CACGAGTGCAACATTTTTTTCACGTGCAATTCATGATAGGCTGA-AA--GCAGGCGAAT--C--GT--
gi|14 : CTTAGCCTACCAATCTGTTAGT---TGTTGCTGATGAACTTG-TCT--T--GTG---ATT-TT--TT-TA---TGCTGAACA-TA----TGC-TA--TAAC-CATGAGTGCAACATTTTTT-CATGTACAATTCATGATAGGCTG-------------AAT--C--AT--GCATTTTGCAAaggtt
gi|16 : CTGAGCCTACCCTTCTGTTAGT---TGTTGCTGGTCAACTTG-TCT--T--GT----ATT-TT--TT-TT--ATACTGATCG-TG----TGT-TG--GTAC-TACAAGTACAAAACTTTTG-CAAGTACACTTAATGATAGGCCGA-GA--GCACACGAAT--tatt
gi|19 : CCTATCCCTCTTTTAGT---TATTGCTTGTTATTTTG-G-------G-----ATTCTG--TT-TA---TACTAAAAA-TG----TGC-TG--TAAC-CACAAGCGCAGCATGTGTT-CAAGTGCACTCCACGATAGGCCGA-AA--ACGTGCGAAT--C--tgtatg
gi|15 : tCTACCCATCTGTTGAT---TGTTGCTGGTTAACTTGTATTG-T--G-----ATT-TT--TT-CA--ATGCTGAACA-TG----TGT-TG--TAAC-CATGACGACAACATTCTTT-CACGTGCAATATATGATAGGCCAA-AC--GCAGGCGAAT--CGTAT--G--ATTTGgcaat
gi|4 : aTGTTAGT---TGCGGAAAGTGAACCTG-TCT--T--GTG---ATG-TG--TT-TA---TACTGAACA-TG----TGT-TG--TAAC-CGTAAGTGCAACATTATTT-TACGTGCAATTTATGATAGGCCGA-GA--GC-GGCGAAT--CGTAC--G--TTTCACAA
gi|1 : aatgattgacgcatggaaaggatcaccgctcttacattatgttgtggaaaagcgttagtTGATTATCTTG-TCC--T--GTGGTTGTT-T---TT-TC--CTATTGAACA-TA----TGT-TG--TGAT-AGTGAGTGCAACATTTTTTTCACGTGCAATTCATGATAGACCGA-GA--GCGAGCGAAC--CGTAT--G--CTTTGTAAt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): GTTGACACATGAAATGGATCACAGCTCTTACTTTATCTTGTTGGAAAGCTTTTTTCTGTTAAACCTATCCGTCTGTTAGTTGT
Unaligned ( gi|21 ): ACATGCTAAATTAAAACACCTTCTATGCCATTGCAGGAAATAGTTGTTGTT
Alignments
lowQualScore : 33333333333333 2 22 11111
lowQualScore : 0 99999999999999 2 333 2 666666 2 5 22 2 55555 2 00 2 7777 2 22 2 2 33333 3 77777 44 99
lowQualScore : . .............. . ... . ...... . . .. . ..... . .. . .... . .. . . ..... . ..... .. ..
lowQualScore : 9 55555555555555 5 777 1 111111 1 3 99 1 33333 1 11 1 4444 1 99 2 2 88888 2 11111 22 22
consensus : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGT-CTTGTGA--T-TT-----TTT-T--ATACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--C--GT--G--TTTCGCAA
Reference ( family-1042 ) : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGT-CTTGT-A--T-TT-----TTT-TA-ATACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--C--AT--G--TTTCGCAA
gi|1 : TT---GGTTGTT-TATG------ATTATCTTGT-CCTGT-GGTTGTT-----TTT-TC-CTATTGAACA-TA----TGT-TG--TGATAGTGAGTGCAACA-TTTTTTTCACGTGCAATTCATGATAGACCGA-GA--GCGAGCGAAC--CGTAT--G--CTTTGTAA
gi|10 : gcgggctgccatgcatcgcacatattgttgacgtttggatgggatcaccgccctcactttgtgttgtgataaatcattagtttTGCTATGTTTTGCATACATCC--------------TCACTGGGCCTACACATTTGTT---AGTTTTT-GATG------GTTAACTGGT-CTCAT-G--T-TTTTTAATTT-TT-ATGCTGAAAA-TG----TGT-TG--TAGTCATG------------TT-TTCATGTGCAATTCAGTATTGGCTGA-TA--GCTGGCGAAT--C--AT--A--tatt
gi|11 : ggcGCTATGGGTTGCTCACATTG--------------TCACTCAGCCTACCCATTTGTT---AATTGTT-GCTG------GTTAACTTGTCCTTG--A--T-TG-----TTT-TT-ATAATGAACA-TG----TGT-TG--TAATCATGAGTGCAACA-TTTT-TTCACATGTAATTCATAACAGGCCGA-AT--GCAGgt
gi|12 : CACTCAGCCTACACATCTGTC---AGTTGTT-GCTG------GTTAAGTTAT-GTTGTTA--T-GT-----TTG-TT-ATACTGAACAATG----TGT-TG--TAACCATGAGTGAAAGA-TATT-TTCCCGTGCAATACATGATAAGCCAA-CA--GCGGGCGAATTGT--AT--G--TTTagaaattgta
gi|13 : CTCAGCCTTTTCATCCGTT---AGTTGTT-GCTA------GTTTACTTGA-CTTGTGA--T-TT-----TTT-T--ATACAGAACA-TG----TGT-TG--TAACCACGAGTGCAACATTTTT-TTCACGTGCAATTCATGATAGGCTGA-AA--GCAGGCGAAT--C--GT--
gi|14 : CTTAGCCTACCAATCTGTT---AGTTGTT-GCTG------ATGAACTTGT-CTTGTGA--T-TT-----TTT-T--ATGCTGAACA-TA----TGC-TA--TAACCATGAGTGCAACA-TTTT-TTCATGTACAATTCATGATAGGC-------------TGAAT--C--AT--GCATTTTGCAAaggtt
gi|15 : CTACCCATCTGTT---GATTGTT-GCTG------GTTAACTTGT-ATTGTGA--T-TT-----TTT-CA-ATGCTGAACA-TG----TGT-TG--TAACCATGACGACAACA-TTCT-TTCACGTGCAATATATGATAGGCCAA-AC--GCAGGCGAAT--C--GT--A--tatt
gi|16 : aGCCTACCCTTCTGTT---AGTTGTT-GCTG------GTCAACTTGT-CTTGT-A--T-TT-----TTT-TT-ATACTGATCG-TG----TGT-TG--GTACTACAAGTACAAAA-CTTT-TGCAAGTACACTTAATGATAGGCCGA-GA--GCACACGAAT--gatttg
gi|17 : ctgaTGCTATGCATTGCACTCATTG--------------TCACTCAGACTACACGTCTGTT---AGTTGTT-GCTG------GTTAAGTTGT-CTTGTGA--T-TT-----TTT----ATACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTTA-TTCACGTGTTATTCAtgtatg
gi|18 : gcCATCG--------------CCATTCTGCCTACCGATCTGTT---TGTTGTT-TTTG------GTTAATTTGT-CTTG-------------------------TGA------------T-T-------CATGAGTGCAACA-TTTT-TTCACGAGTAATTCATGATAG--TAA-GAACGCAGATGAATTGC--AT--A--TTTCGCAA
gi|19 : CCTATCCCTCTTTT---AGTTATT-GCTT------GTTATTTTG-----GG-A--T-TC-----TGT-TT-ATACTAAAAA-TG----TGC-TG--TAACCACAAGCGCAGCA-TGTG-TTCAAGTGCACTCCACGATAGGCCGA-AA--ACGTGCGAAT--C--tact
gi|2 : tTGCTATGCATTGCAGGCATTGCATGACATGCAACTTCACTCGGCCTGCCCGGCTGTT---AGTTTTT-GCTG------GTTAACTTAT-CTTGTGA--T-TG-----TTT-TATATACTGAACA-TGTGACTGT-TG--TAATCATGAGTGTAACA--TTT-TTCACGTGCAATTCATGATCGGATGATGT--G-GGGCGAAT--T--GTAAG--TTTCGCAAgcaat
gi|3 : ggcTGTATTGCACGCATCG--------------TCACTCAGCCTACCCAACTGTT---ATTTGTT-GCTG------GTCAACGTGT-CTTGTGA--T-TG-----TTT-TT-ATACTGAACA-AG----TGC-TG--AAATCATGAGTGCAACA-TTTT-TTCACGTGCAGTGCATGAGAAGCTGA-GG--GTGGGCGAATGGT--AT--G--TTTCGCAAta
gi|4 : gggctgctatgcattgtacccatGTT---AGTTGTTAGTTGCGGAAAGTGAACCTGT-CTTGTGA--T-GT-----GTT-T--ATACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTAT-TTTACGTGCAATTTATGATAGGCCGA-GA--GC-GGCGAAT--CGTAC--G--TTTCACAAta
gi|5 : aatgattgacgcatggaaaggatcaccgctcttacattatgttgtggaaaagcGCAATGCATTGCACGTATCA--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTGACTTGT-CCTGTGA--T-TT-----TTTGTATATACT------TG----TGA-TG--TAACCATGAGTGCAACt
gi|6 : gggctgttatgtattgtatttcccTGCCATGCATTGCACGCATCGCATTACACG-----TCACCCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTACCTTGT-CTTGTGA--T-GT-----TTT-T--ATTCTGAACA-TGCA--TGTATGGTTA--CATGCATGTAACA--TTG-TTCACGTGCAATTCAAGATAGGCCAA-GA--GCAGGCAAAT--C--GT--ACTTTTTGCAAgatgaaattggatatgcaatgctaatggtgcaaaatgtgagttctacagta
gi|7 : GCCTATCCATCTGTT---TGTTGTT-GCTG------GTTAACTTGT-TTTCTGA--T-AT-----TTT-T--ATACTAAACA-TG----CAC-TA--TAATCAAGGGTACACTA-TTTT-TTCACATGCAATTCATGATA
gi|8 : gttaacgcatggcatggatcaccgctctcactttatcttgtggaaaagcgttccactcttgcgttaaTGGATGGCACCCGTCA--------------TTACTCCGCCTACCCATCTATTGTAATTTGTT-GCTG------GTTAACTTGT-CTTGTGA--T-TC-----TTT-TA-ATGCTAAAAA-TG----TGC-TG--TAACCATGAGAGCAACA-TTTT-TTCATGCACAATTCATGATAGGCCCA-AA--GCGGGTGAATTAT--AT--G--TTT
gi|9 : TGCTATGCATTGCACACATTG--------------TCACTCAGCCTACCCATCTGTT---AGATGCT-GCTG------GTTAACTTGA-CTTG--A--T-TT-----ATT-TA-ACACTGAACA-TG----TGT-TG--TAACCACGAGTGCAACA-TTTT-TTCATGTGCAATTCATGATAGGCTGA-GA--GCAGACAAAT--C--AT--G--TTTTGCAAtcaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTTGACACATGAAATGGATCACAGCTCTTACTTTATCTTGTTGGAAAGCTTTTTTCTGTTAAACCTATCCGTCTGTTAGTTGT
Unaligned ( gi|21 ): ACATGCTAAATTAAAACACCTTCTATGCCATTGCAGGAAATAGTTGTTGTT
Alignments
lowQualScore : 33333333333333 11111 11111111
lowQualScore : 0 99999999999999 2 333 2 666666 55555 2 2 555 6 2 7777 2 22 2 2 2 33 2 77 11111111
lowQualScore : . .............. . ... . ...... ..... . . ... . . .... . .. . . . .. . .. ........
lowQualScore : 9 55555555555555 5 777 1 111111 33333 1 1 888 3 1 4444 1 99 2 2 5 77 5 33 11111111
consensus : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CG--T--G--TTTCGCAA
Reference ( family-1042 ) : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CG--T--G--TTTCGCAA
gi|1 : TT---GGTTGTT-TATG------ATTATCTTGTCCTGTGGTTGTT--TT-T-T---CC-TATTGAACA-TA----TGT-TG--TGATAGTGAGTGCAACA-TTTTTTTCACGTGCAATTCATGATAGACCGA-GA--GCGAGCGAAC--CGTAT--G--CTTTGTAA
gi|10 : gcgggctgccatgcatcgcacatattgttgacgtttggatgggatcaccgccctcactttgtgttgtgataaatcattagtttTGCTATGTTTTGCATACATCC--------------TCACTGGGCCTACACATTTGTT---AGTTTTT-GATG------GTTAACTGGTCTCATGTTTTTTAATT-T-T---TA-TGCTGAAAA-TG----TGT-TG--TAGTCATG------------TT-TTCATGTGCAATTCAGTATTGGCTGA-TA--GCTGGCGAAT--CA--T--A--tatt
gi|11 : ggcGCTATGGGTTGCTCACATTG--------------TCACTCAGCCTACCCATTTGTT---AATTGTT-GCTG------GTTAACTTGTCCT-TGATTG----TT-T-T---TA-TAATGAACA-TG----TGT-TG--TAATCATGAGTGCAACA-TTTT-TTCACATGTAATTCATAACAGGCCGA-AT--GCAGAGAAAT--TG--T--gt
gi|12 : CACTCAGCCTACACATCTGTC---AGTTGTT-GCTG------GTTAAGTTATGTTGTTATG-----TT-TGT---TA-TACTGAACAATG----TGT-TG--TAACCATGAGTGAAAGA-TATT-TTCCCGTGCAATACATGATAAGCCAA-CA--GCGGGCGAAT--TGTAT--G--TTTa
gi|13 : CTCAGCCTTTTCATCCGTT---AGTTGTT-GCTA------GTTTACTTGACTTGTGATT-----TT-T-T---TA-TACAGAACA-TG----TGT-TG--TAACCACGAGTGCAACATTTTT-TTCACGTGCAATTCATGATAGGCTGA-AA--GCAGGCGAAT--CG--T--
gi|14 : CTTAGCCTACCAATCTGTT---AGTTGTT-GCTG------ATGAACTTGTCTTGTGATT-----TT-T-T---TA-TGCTGAACA-TA----TGC-TA--TAACCATGAGTGCAACA-TTTT-TTCATGTACAATTCATGATAGGCTGA-aggtt
gi|15 : CTACCCATCTGTT---GATTGTT-GCTG------GTTAACTTGTATTGTGATT-----TT-T-T---CAATGCTGAACA-TG----TGT-TG--TAACCATGACGACAACA-TTCT-TTCACGTGCAATATATGATAGGCCAA-AC--GCAGGCGAAT--CG--T--A--atcatgcattttgcaatatt
gi|16 : aGCCTACCCTTCTGTT---AGTTGTT-GCTG------GTCAACTTGTCTTGTATTT-----TT-T-T---TA-TACTGATCG-TG----TGT-TG--GTACTACAAGTACAAAA-CTTT-TGCAAGTACACTTAATGATAGGCCGA-GA--GCACACGAAT--TG--T--A--gatttg
gi|17 : ctgaTGCTATGCATTGCACTCATTG--------------TCACTCAGACTACACGTCTGTT---AGTTGTT-GCTG------GTTAAGTTGTCTTGTGA-T-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTTA-TTCACGTGTTATTCAg
gi|18 : gcCATCG--------------CCATTCTGCCTACCGATCTGTT---TGTTGTT-TTTG------GTTAATTTGTCTTGTGATT---------------------------------------------CATGAGTGCAACA-TTTT-TTCACGAGTAATTCATGATAG--TAA-GAACGCAGATGAATTGCA--T--A--TTTCGCAA
gi|19 : CCTATCCCTCTTTT---AGTTATT-GCTT------GTTA-----TTTTGGGATT-----CTGT-T---TA-TACTAAAAA-TG----TGC-TG--TAACCACAAGCGCAGCA-TGTG-TTCAAGTGCACTCCACGATAGGCCGA-AA--ACGTGCGAAT--CG--tact
gi|2 : tTGCTATGCATTGCAGGCATTGCATGACATGCAACTTCACTCGGCCTGCCCGGCTGTT---AGTTTTT-GCTG------GTTAACTTATCTTGTGATTG----TT-T-TA--TA-TACTGAACA-TGTGACTGT-TG--TAATCATGAGTGTAACA--TTT-TTCACGTGCAATTCATGATCGGATGATGT--G-GGGCGAAT--TG--TAAG--TTTCGCAAcaat
gi|3 : ggcTGTATTGCACGCATCG--------------TCACTCAGCCTACCCAACTGTT---ATTTGTT-GCTG------GTCAACGTGTCTTGTGATTG----TT-T-T---TA-TACTGAACA-AG----TGC-TG--AAATCATGAGTGCAACA-TTTT-TTCACGTGCAGTGCATGAGAAGCTGA-GG--GTGGGCGAAT--GGTAT--G--TTTCGCAAta
gi|4 : gggctgctatgcattgtacccatGTT---AGTTGTTAGTTGCGGAAAGTGAACCTGTCTTGTGATG-----TG-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTAT-TTTACGTGCAATTTATGATAGGCCGA-GA--GC-GGCGAAT--CG--TACG--TTTCACAAta
gi|5 : aatgattgacgcatggaaaggatcaccgctcttacattatgttgtggaaaagcGCAATGCATTGCACGTATCA--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTGACTTGTCCTGTGATT-----TT-T-TGTATA-TACT------TG----TGA-TG--TAACCATGAGTGCAACt
gi|6 : gggctgttatgtattgtatttcccTGCCATGCATTGCACGCATCGCATTACACG-----TCACCCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTACCTTGTCTTGTGATG-----TT-T-T---TA-TTCTGAACA-TGCA--TGTATGGTTA--CATGCATGTAACA--TTG-TTCACGTGCAATTCAAGATAGGCCAA-GA--GCAGGCAAAT--CG--T--ACTTTTTGCAAgatgaaattggatatgcaatgctaatggtgcaaaatgtgagttctacagta
gi|7 : GCCTATCCATCTGTT---TGTTGTT-GCTG------GTTAACTTGTTTTCTGATA-----TT-T-T---TA-TACTAAACA-TG----CAC-TA--TAATCAAGGGTACACTA-TTTT-TTCACATGCAATTCATGATA
gi|8 : gttaacgcatggcatggatcaccgctctcactttatcttgtggaaaagcgttccactcttgcgttaaTGGATGGCACCCGTCA--------------TTACTCCGCCTACCCATCTATTGTAATTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----CT-T-T---TAATGCTAAAAA-TG----TGC-TG--TAACCATGAGAGCAACA-TTTT-TTCATGCACAATTCATGATAGGCCCA-AA--GCGGGTGAATTATA--T--G--TTT
gi|9 : TGCTATGCATTGCACACATTG--------------TCACTCAGCCTACCCATCTGTT---AGATGCT-GCTG------GTTAACTTGACTTG--ATT-----TA-T-T---TAACACTGAACA-TG----TGT-TG--TAACCACGAGTGCAACA-TTTT-TTCATGTGCAATTCATGATAGGCTGA-GA--GCAGACAAAT--CA--T--G--TTTTGCAAtcaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTTGACACATGAAATGGATCACAGCTCTTACTTTATCTTGTTGGAAAGCTTTTTTCTGTTAAACCTATCCGTCTGTTAGTTGT
Unaligned ( gi|21 ): ACATGCTAAATTAAAACACCTTCTATGCCATTGCAGGAAATAGTTGTTGTT
Alignments
lowQualScore : 33333333333333 11111 11111111
lowQualScore : 0 99999999999999 2 333 2 666666 55555 2 2 555 6 2 7777 2 22 2 2 2 33 2 77 11111111
lowQualScore : . .............. . ... . ...... ..... . . ... . . .... . .. . . . .. . .. ........
lowQualScore : 9 55555555555555 5 777 1 111111 33333 1 1 888 3 1 4444 1 99 2 2 5 77 5 33 11111111
consensus : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CG--T--G--TTTCGCAA
Reference ( family-1042 ) : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CG--T--G--TTTCGCAA
gi|1 : TT---GGTTGTT-TATG------ATTATCTTGTCCTGTGGTTGTT--TT-T-T---CC-TATTGAACA-TA----TGT-TG--TGATAGTGAGTGCAACA-TTTTTTTCACGTGCAATTCATGATAGACCGA-GA--GCGAGCGAAC--CGTAT--G--CTTTGTAA
gi|10 : gcgggctgccatgcatcgcacatattgttgacgtttggatgggatcaccgccctcactttgtgttgtgataaatcattagtttTGCTATGTTTTGCATACATCC--------------TCACTGGGCCTACACATTTGTT---AGTTTTT-GATG------GTTAACTGGTCTCATGTTTTTTAATT-T-T---TA-TGCTGAAAA-TG----TGT-TG--TAGTCATG------------TT-TTCATGTGCAATTCAGTATTGGCTGA-TA--GCTGGCGAAT--CA--T--A--tatt
gi|11 : ggcGCTATGGGTTGCTCACATTG--------------TCACTCAGCCTACCCATTTGTT---AATTGTT-GCTG------GTTAACTTGTCCT-TGATTG----TT-T-T---TA-TAATGAACA-TG----TGT-TG--TAATCATGAGTGCAACA-TTTT-TTCACATGTAATTCATAACAGGCCGA-AT--GCAGAGAAAT--TG--T--gt
gi|12 : CACTCAGCCTACACATCTGTC---AGTTGTT-GCTG------GTTAAGTTATGTTGTTATG-----TT-TGT---TA-TACTGAACAATG----TGT-TG--TAACCATGAGTGAAAGA-TATT-TTCCCGTGCAATACATGATAAGCCAA-CA--GCGGGCGAAT--TGTAT--G--TTTa
gi|13 : CTCAGCCTTTTCATCCGTT---AGTTGTT-GCTA------GTTTACTTGACTTGTGATT-----TT-T-T---TA-TACAGAACA-TG----TGT-TG--TAACCACGAGTGCAACATTTTT-TTCACGTGCAATTCATGATAGGCTGA-AA--GCAGGCGAAT--CG--T--
gi|14 : CTTAGCCTACCAATCTGTT---AGTTGTT-GCTG------ATGAACTTGTCTTGTGATT-----TT-T-T---TA-TGCTGAACA-TA----TGC-TA--TAACCATGAGTGCAACA-TTTT-TTCATGTACAATTCATGATAGGCTGA-aggtt
gi|15 : CTACCCATCTGTT---GATTGTT-GCTG------GTTAACTTGTATTGTGATT-----TT-T-T---CAATGCTGAACA-TG----TGT-TG--TAACCATGACGACAACA-TTCT-TTCACGTGCAATATATGATAGGCCAA-AC--GCAGGCGAAT--CG--T--A--atcatgcattttgcaatatt
gi|16 : aGCCTACCCTTCTGTT---AGTTGTT-GCTG------GTCAACTTGTCTTGTATTT-----TT-T-T---TA-TACTGATCG-TG----TGT-TG--GTACTACAAGTACAAAA-CTTT-TGCAAGTACACTTAATGATAGGCCGA-GA--GCACACGAAT--TG--T--A--gatttg
gi|17 : ctgaTGCTATGCATTGCACTCATTG--------------TCACTCAGACTACACGTCTGTT---AGTTGTT-GCTG------GTTAAGTTGTCTTGTGA-T-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTTA-TTCACGTGTTATTCAg
gi|18 : gcCATCG--------------CCATTCTGCCTACCGATCTGTT---TGTTGTT-TTTG------GTTAATTTGTCTTGTGATT---------------------------------------------CATGAGTGCAACA-TTTT-TTCACGAGTAATTCATGATAG--TAA-GAACGCAGATGAATTGCA--T--A--TTTCGCAA
gi|19 : CCTATCCCTCTTTT---AGTTATT-GCTT------GTTA-----TTTTGGGATT-----CTGT-T---TA-TACTAAAAA-TG----TGC-TG--TAACCACAAGCGCAGCA-TGTG-TTCAAGTGCACTCCACGATAGGCCGA-AA--ACGTGCGAAT--CG--tact
gi|2 : tTGCTATGCATTGCAGGCATTGCATGACATGCAACTTCACTCGGCCTGCCCGGCTGTT---AGTTTTT-GCTG------GTTAACTTATCTTGTGATTG----TT-T-TA--TA-TACTGAACA-TGTGACTGT-TG--TAATCATGAGTGTAACA--TTT-TTCACGTGCAATTCATGATCGGATGATGT--G-GGGCGAAT--TG--TAAG--TTTCGCAAcaat
gi|3 : ggcTGTATTGCACGCATCG--------------TCACTCAGCCTACCCAACTGTT---ATTTGTT-GCTG------GTCAACGTGTCTTGTGATTG----TT-T-T---TA-TACTGAACA-AG----TGC-TG--AAATCATGAGTGCAACA-TTTT-TTCACGTGCAGTGCATGAGAAGCTGA-GG--GTGGGCGAAT--GGTAT--G--TTTCGCAAta
gi|4 : gggctgctatgcattgtacccatGTT---AGTTGTTAGTTGCGGAAAGTGAACCTGTCTTGTGATG-----TG-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTAT-TTTACGTGCAATTTATGATAGGCCGA-GA--GC-GGCGAAT--CG--TACG--TTTCACAAta
gi|5 : aatgattgacgcatggaaaggatcaccgctcttacattatgttgtggaaaagcGCAATGCATTGCACGTATCA--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTGACTTGTCCTGTGATT-----TT-T-TGTATA-TACT------TG----TGA-TG--TAACCATGAGTGCAACt
gi|6 : gggctgttatgtattgtatttcccTGCCATGCATTGCACGCATCGCATTACACG-----TCACCCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTACCTTGTCTTGTGATG-----TT-T-T---TA-TTCTGAACA-TGCA--TGTATGGTTA--CATGCATGTAACA--TTG-TTCACGTGCAATTCAAGATAGGCCAA-GA--GCAGGCAAAT--CG--T--ACTTTTTGCAAgatgaaattggatatgcaatgctaatggtgcaaaatgtgagttctacagta
gi|7 : GCCTATCCATCTGTT---TGTTGTT-GCTG------GTTAACTTGTTTTCTGATA-----TT-T-T---TA-TACTAAACA-TG----CAC-TA--TAATCAAGGGTACACTA-TTTT-TTCACATGCAATTCATGATA
gi|8 : gttaacgcatggcatggatcaccgctctcactttatcttgtggaaaagcgttccactcttgcgttaaTGGATGGCACCCGTCA--------------TTACTCCGCCTACCCATCTATTGTAATTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----CT-T-T---TAATGCTAAAAA-TG----TGC-TG--TAACCATGAGAGCAACA-TTTT-TTCATGCACAATTCATGATAGGCCCA-AA--GCGGGTGAATTATA--T--G--TTT
gi|9 : TGCTATGCATTGCACACATTG--------------TCACTCAGCCTACCCATCTGTT---AGATGCT-GCTG------GTTAACTTGACTTG--ATT-----TA-T-T---TAACACTGAACA-TG----TGT-TG--TAACCACGAGTGCAACA-TTTT-TTCATGTGCAATTCATGATAGGCTGA-GA--GCAGACAAAT--CA--T--G--TTTTGCAAtcaaat
blockSeqs : CATGACATGCAACT A GTA A CGGAAA TTTAA G G GTA A A TGAC A GT T . T AC T TG TATG
blockSeqs : CATTACACG A . . . G . . A A . CA . . . . . . A TA TAAG
blockSeqs : . A . . . G . . . A . . . . . . . . G . TATG
blockSeqs : . A . . . G . . . . . . . . . . . . A . TACG
blockSeqs : . A . . . . . . . . . . . . . . . . A . TACT
blockSeqs : . T . . . . . . . . . . . . . . . . A . TA
blockSeqs : . G . . . . . . . . . . . . . . . . A . TA
blockSeqs : . A . . . . . . . . . . . . . . . . G . TA
blockSeqs : . G . . . . . . . . . . . . . . . . G . TA
blockSeqs : G . . . . . . . . . . . . . . . . G . TG
blockSeqs : C . . . . . . . . . . . . . . . . A . TG
blockSeqs : A . . . . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons : ***** TA******
originalCons : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CG--T--G--TTTCGCAA
finalCons : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CGTA------TTTCGCAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTTGACACATGAAATGGATCACAGCTCTTACTTTATCTTGTTGGAAAGCTTTTTTCTGTTAAACCTATCCGTCTGTTAGTTGT
Unaligned ( gi|21 ): ACATGCTAAATTAAAACACCTTCTATGCCATTGCAGGAAATAGTTGTTGTT
Alignments
lowQualScore : 33333333333333 11111 11
lowQualScore : 0 99999999999999 2 333 2 666666 55555 2 2 555 6 2 7777 2 22 2 2 2 33 2 33 44 44
lowQualScore : . .............. . ... . ...... ..... . . ... . . .... . .. . . . .. . .. .. ..
lowQualScore : 9 55555555555555 5 777 1 111111 33333 1 1 888 3 1 4444 1 99 2 2 5 77 5 77 77 66
consensus : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CGTA--T--TTCGCAA
Reference ( family-1042 ) : TGCTATGCATTGCACGCATCG--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCATGAGTGCAACA-TTTT-TTCACGTGCAATTCATGATAGGCCGA-GA--GCGGGCGAAT--CGTA--T--TTCGCAA
gi|1 : TT---GGTTGTT-TATG------ATTATCTTGTCCTGTGGTTGTT--TT-T-T---CC-TATTGAACA-TA----TGT-TG--TGATAGTGAGTGCAACA-TTTTTTTCACGTGCAATTCATGATAGACCGA-GA--GCGAGCGAAC--CGTA--TGCTTTGTAA
gi|10 : gcgggctgccatgcatcgcacatattgttgacgtttggatgggatcaccgccctcactttgtgttgtgataaatcattagtttTGCTATGTTTTGCATACATCC--------------TCACTGGGCCTACACATTTGTT---AGTTTTT-GATG------GTTAACTGGTCTCATGTTTTTTAATT-T-T---TA-TGCTGAAAA-TG----TGT-TG--TAGTCATG------------TT-TTCATGTGCAATTCAGTATTGGCTGA-TA--GCTGGCGAAT--CATA--T--tatt
gi|11 : ggcGCTATGGGTTGCTCACATTG--------------TCACTCAGCCTACCCATTTGTT---AATTGTT-GCTG------GTTAACTTGTCCT-TGATTG----TT-T-T---TA-TAATGAACA-TG----TGT-TG--TAATCATGAGTGCAACA-TTTT-TTCACATGTAATTCATAACAGGCCGA-AT--GCAGAGAAAT--TGTA--gt
gi|12 : CACTCAGCCTACACATCTGTC---AGTTGTT-GCTG------GTTAAGTTATGTTGTTATG-----TT-TGT---TA-TACTGAACAATG----TGT-TG--TAACCATGAGTGAAAGA-TATT-TTCCCGTGCAATACATGATAAGCCAA-CA--GCGGGCGAAT--TGTA--T--
gi|13 : CTCAGCCTTTTCATCCGTT---AGTTGTT-GCTA------GTTTACTTGACTTGTGATT-----TT-T-T---TA-TACAGAACA-TG----TGT-TG--TAACCACGAGTGCAACATTTTT-TTCACGTGCAATTCATGATAGGCTGA-AA--GCAGGCGAAT--CGTA--gttt
gi|14 : CTTAGCCTACCAATCTGTT---AGTTGTT-GCTG------ATGAACTTGTCTTGTGATT-----TT-T-T---TA-TGCTGAACA-TA----TGC-TA--TAACCATGAGTGCAACA-TTTT-TTCATGTACAATTCATGATAGGCTGA-ggtt
gi|15 : CTACCCATCTGTT---GATTGTT-GCTG------GTTAACTTGTATTGTGATT-----TT-T-T---CAATGCTGAACA-TG----TGT-TG--TAACCATGACGACAACA-TTCT-TTCACGTGCAATATATGATAGGCCAA-AC--GCAGGCGAAT--CGTA--T--atcatgcattttgcaatatt
gi|16 : aGCCTACCCTTCTGTT---AGTTGTT-GCTG------GTCAACTTGTCTTGTATTT-----TT-T-T---TA-TACTGATCG-TG----TGT-TG--GTACTACAAGTACAAAA-CTTT-TGCAAGTACACTTAATGATAGGCCGA-GA--GCACACGAAT--TGTA--T--gatttg
gi|17 : ctgaTGCTATGCATTGCACTCATTG--------------TCACTCAGACTACACGTCTGTT---AGTTGTT-GCTG------GTTAAGTTGTCTTGTGA-T-----TT-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTTA-TTCACGTGTTATTCAg
gi|18 : gcCATCG--------------CCATTCTGCCTACCGATCTGTT---TGTTGTT-TTTG------GTTAATTTGTCTTGTGATT---------------------------------------------CATGAGTGCAACA-TTTT-TTCACGAGTAATTCATGATAG--TAA-GAACGCAGATGAATTGCATA--T--TTCGCAA
gi|19 : CCTATCCCTCTTTT---AGTTATT-GCTT------GTTA-----TTTTGGGATT-----CTGT-T---TA-TACTAAAAA-TG----TGC-TG--TAACCACAAGCGCAGCA-TGTG-TTCAAGTGCACTCCACGATAGGCCGA-AA--ACGTGCGAAT--CGCA--tact
gi|2 : tTGCTATGCATTGCAGGCATTGCATGACATGCAACTTCACTCGGCCTGCCCGGCTGTT---AGTTTTT-GCTG------GTTAACTTATCTTGTGATTG----TT-T-TA--TA-TACTGAACA-TGTGACTGT-TG--TAATCATGAGTGTAACA--TTT-TTCACGTGCAATTCATGATCGGATGATGT--G-GGGCGAAT--TGTAAGT--TTCGCAAat
gi|3 : ggcTGTATTGCACGCATCG--------------TCACTCAGCCTACCCAACTGTT---ATTTGTT-GCTG------GTCAACGTGTCTTGTGATTG----TT-T-T---TA-TACTGAACA-AG----TGC-TG--AAATCATGAGTGCAACA-TTTT-TTCACGTGCAGTGCATGAGAAGCTGA-GG--GTGGGCGAAT--GGTATGT--TTCGCAAta
gi|4 : gggctgctatgcattgtacccatGTT---AGTTGTTAGTTGCGGAAAGTGAACCTGTCTTGTGATG-----TG-T-T---TA-TACTGAACA-TG----TGT-TG--TAACCGTAAGTGCAACA-TTAT-TTTACGTGCAATTTATGATAGGCCGA-GA--GC-GGCGAAT--CGTACGT--TTCACAAta
gi|5 : aatgattgacgcatggaaaggatcaccgctcttacattatgttgtggaaaagcGCAATGCATTGCACGTATCA--------------TCACTCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTGACTTGTCCTGTGATT-----TT-T-TGTATA-TACT------TG----TGA-TG--TAACCATGAGTGCAACt
gi|6 : gggctgttatgtattgtatttcccTGCCATGCATTGCACGCATCGCATTACACG-----TCACCCGGCCTACCCATCTGTT---AGTTGTT-GCTG------GTTACCTTGTCTTGTGATG-----TT-T-T---TA-TTCTGAACA-TGCA--TGTATGGTTA--CATGCATGTAACA--TTG-TTCACGTGCAATTCAAGATAGGCCAA-GA--GCAGGCAAAT--CGTACTT--TTTGCAAgatgaaattggatatgcaatgctaatggtgcaaaatgtgagttctacagta
gi|7 : GCCTATCCATCTGTT---TGTTGTT-GCTG------GTTAACTTGTTTTCTGATA-----TT-T-T---TA-TACTAAACA-TG----CAC-TA--TAATCAAGGGTACACTA-TTTT-TTCACATGCAATTCATGATA
gi|8 : gttaacgcatggcatggatcaccgctctcactttatcttgtggaaaagcgttccactcttgcgttaaTGGATGGCACCCGTCA--------------TTACTCCGCCTACCCATCTATTGTAATTTGTT-GCTG------GTTAACTTGTCTTGTGATT-----CT-T-T---TAATGCTAAAAA-TG----TGC-TG--TAACCATGAGAGCAACA-TTTT-TTCATGCACAATTCATGATAGGCCCA-AA--GCGGGTGAAT--TATA--T--
gi|9 : TGCTATGCATTGCACACATTG--------------TCACTCAGCCTACCCATCTGTT---AGATGCT-GCTG------GTTAACTTGACTTG--ATT-----TA-T-T---TAACACTGAACA-TG----TGT-TG--TAACCACGAGTGCAACA-TTTT-TTCATGTGCAATTCATGATAGGCTGA-GA--GCAGACAAAT--CATG--T--TTTGCAAgttttcaaat
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): GTTGACACATGAAATGGATCACAGCTCTTACTTTATCTTGTTGGAAAGCTTTTTTCTGTTAAACCTATCCGTCTGTTAGTTGT
Unaligned ( gi|21 ): ACATGCTAAATTAAAACACCTTCTATGCCATTGCAGGAAATAGTTGTTGTT