lowQualScore : 11111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 77777777777 11111 1 1111 222222 3333333333333 33333333333333333333333333333333333 1 1 1 1 22 22 1 2222222 2222 1 666666666666666666666666666666666666666666666666666666666666666666 1 44444444444444444444 111111 77777777777777777777777777 5555555555555555555555555 2222222 222222222 1 1
lowQualScore : 33 3 22222222222 66666 6 7777 333333 1111111111111 0 99999999999999999999999999999999999 0 2 7 7 6 1 3 0 33 88 99 3 0 8 0 8888888 9 3 6 9999 5 2 6 333333333333333333333333333333333333333333333333333333333333333333 5 0 0 6 5 777 5 66 0 0 00000000000000000000 444444 5 77777777777777777777777777 77 5 0 77 5 77 4444444444444444444444444 5 5 0000000 2 999999999 0 0 2
lowQualScore : .. . ........... ..... . .... ...... ............. . ................................... . . . . . . . . .. .. .. . . . . ....... . . . .... . . . .................................................................. . . . . . ... . .. . . .................... ...... . .......................... .. . . .. . .. ......................... . . ....... . ......... . . .
lowQualScore : 22 2 22222222222 77777 0 0000 000000 2222222222222 8 22222222222222222222222222222222222 8 8 0 0 0 0 2 0 66 00 44 2 2 8 0 5555555 2 5 0 8888 0 2 5 111111111111111111111111111111111111111111111111111111111111111111 0 1 2 1 0 000 0 99 4 0 66666666666666666666 444444 0 11111111111111111111111111 99 4 7 99 7 99 7777777777777777777777777 7 7 2222222 5 888888888 0 0 5
consensus : GCCTAAAAAATAAAACTGTT--TGTTTGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTA----G---G----GATTTTTT-T----TCTGAA---TCTTTTTTTTTTGAAA----CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACGAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATA--ATAGACACCCATCCAGNCATCTTATTGA--C-NNNTGTGTTCNAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------AC----------T--ATTAGGCA--TCA-TGC--TGATCTG-A---TAAGGC-TTTTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GT-CGGC-TGTAAA-ATCACAACCCA
Reference ( gi|1 ) : GCCTAAAAAATAAAATTGTTAATGCTCGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTA----G---G----GATTTTTTTTTTTTTTTAAA---TTTTTTTTTTTTGAAA----CTTGATGTTATGTTGTGTCAGTGGTACATCAAGTATTTTAAACATGTTTTGTATGTTGTCTATGTGGTTTGAATGTAAATGACAGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATCTCTGCACTTAATA--GAAGACCCTCATCCAGGCATCTTATTGA--TGAAATGTGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------GC----------T--ATTAGGCA--TCA-TGC--TGATCTG-A---TAAGGC-TGTTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGTT-GT-TGGC-TGTAAA-ATCACAACCCA
gi|2 : GCCTAAAAAAAAAAACTGTT----------TCCTATTTCATCGTCA---AAAAA-AAGTAATAG------GGTAGGTA----G---G----GAG--------------GGACATTTTTTTTTTTTTGAAA----CTTGATGTTATGT---GTCAATGGTACATCATGTATTTTTAACATGTTTTGTTTGTTATTTATATGCTTTTAATGTTTATGAATGTAAATTTAGCTTTAAAACAACCAAACAAAATT-T-ACCCCACCCCCACACCTTATGCTTGCCATTTCTGTACTTAATA--ATAGCCACTCATCCAGGCATCATATTGACTT----TGTGTTC-AATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCAGGCTTTTCCCTAGGAGTTTTCATTTTTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA---------------C----------T--ATTAGGAATTTCA-TNN--NNNNNNN-NCTTTAA------TTTAT-T----TCTTTGTTA-TAAGTTTTAATCC
gi|13 : tcgtttttatcaagaagGCCAAAAAACTAAAACT--------TCATTTCTGGTT----GGCCCTGAAAAAATAA----TAG------AGTTGGTA----AACAG----GATTTTTTCTTTTCTCT------TCTTTTTTT
gi|17 : gCCTAAAAAATTAA-TTGTT------TGTTTCTGATTTCATGGCCC---AAAA
gi|11 : aCTAAAAAA--AAATT-----TGTTTGCTTTCGATTTCATGGCCC---AAAAA-AA----TAGGGTATAGGTAGGTA----G---G----GATTTTTTTT
gi|7 : ggttgtactgaaccaagcatttatttacctgctttgggAATGTTTTTTTCCGATTTCATGGC-----AAAAACAA----TAG------GGAAGGTA----G---GAAGGGATTTTTT------TTTAAA---------------AAAAAAAACTTGATGTTATGTTGTGTCAATGGAACACCATGCATTTTTAACATGTTTAATATGTTATATA
gi|5 : taaactgaatgtcttaatgaggccaaaTGTTTGTTTCCGATTTTATGGCAA---ACAAA-AA----TAG------TGTAGGTATGTAG---G----GATTTTTT--------T-AA---T-------------------CTTGATGTTATGTTGTGTAGATGGTGTATCATGCATTTTTAGCATGTTTTGTATGTTATCTGTGTAATTTTAAAGTTTATGATGGTTAATTTAGATT-AAAACAACCAAATGAAATTGTAAAAAAA-----ATACCTTCTGCTTGTCATTTCTGCATTTAATAATAAAAACACCCATTCAGACATCTTATTGA--
gi|3 : attaacatgcttaaggcctaacaatgTTTTTTTGAAA----CTTGATGTTATGTTGTGTCAGTGGTACATCATGTATTTTTGACATGTTTTGTATGTGATATATGTGCTTTGAATGCAAATGAATATAAATTTACATA-AAAACAACCAAACAATATTTT-AAAAAA-------ATCTTATGCATGTCATTTCTGCACTTAATA--ACAGACATCCATCCTATTATCTTATCGA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG-------------TTTTTCATTTGTGGGT-T--AAG-GAC--CACTACAATAATATTTTTA--------------------AGGGTC------CC-AA--------------AC----------T--ATTAGGCA--TCA-TGC--TGATCTG-A---TGAGGC---------T----T-TTTATTG-CAACCTTTTATTCATAATGA--AAGACAGCT-GT-CAGC-TGTAAA-ATCACAACCCA
gi|4 : TTGAAA----CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTTGATA-AAA-CAACCAAAAAAATTTGT-TAAAAT-----ACACCTT------GTCATTTCTGCACTTAATA--ATAGACACCCATCCAGTCATCTTATTGA--CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------GGG-T---CCCTAGGATTTTTCATTTGTAGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------AC----------T--ATTAGGCA--TCA-TGC--TGATCTG-A---TAAGGC---------T----T-TTTATTA-CAACCTTTTATTCAT----GAAAAGACAGCCAGT-CAGC-TGTAAA-ATCACAACACA
gi|16 : cGTATGTTATCTATGTGCTTTTAATGTTTAAGAATGTAAATTTAGATA-AAg
gi|14 : GGT-TTTTCCCTAGGATTTTTAATTTTGGGGT-C--CAGAAAA--ACATAAAATAAT--TTTTA--------------------AGGCTT------CC-AA--------------
gi|9 : GG-TTTTCCATAGGACTTTTCATTTTGGGGT-T-------------CTACAAAAATA-TATCA--------------------AGGGTCGCAACACC-AATTTTCGGGATCCCGAT----------T--ATAAGACA--TTA-TGT--TGATCTG-----CAGCGCATTTTTATAT----T-TTTGT---CATCCATTTATTCAT----G--AACACaa
gi|6 : GG-TTTACCCTATGATTTTTCATTTGGGGGC-TCAAAG-AAA--CCCTACAATTTTA-TTTTACGGGTATAAGCATAAATTTTAGGGTT------CT-TG--------------AC----------TTAATTAGACA--TCATTGTCATGATCTG-C---GAGTCC-TTTTCAT-TATTAT-TTTATTG-TTAGATTGTCCCCA-----------ACAGTT-GTCTGACATGTAAATAT-GCAATCC
gi|10 : G-TTTTTGCTAGGATTC-------G-GGGTCT--AAG-AAC--CCCTACAA-AATAATTCTA--------------------AGGATC------CC-AACACCAATTTT----GCGGGTCTCGATT--AT-AGG-A---CA-TGT--TGATCTGCA---TC--GCATTTTTAT-T----T-T--ATTGTCATCCGTATATTCAT----G--AACACA
gi|8 : -TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GACACCCCTACAATAATA-TTTTA--------------------AGGGTC------CCCAA--------------AC----------T--ATAAGGCA--TCA-TGC--TGATTTG-A---TAAGGC-TTTTTA--T----T-TTTATTG-CAACCTTTTATTCGT----G--AAGACA---------GC-TGTAAA-ATCACAACCCAa
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): CCTAAATTAAAAAAATGTTTGTTTGTCGCTTCCGGCCTACCCAAAACAATCCCGCCGGTCAGGAATTTTTTTTTTTGTATCCAAATTTT
Unaligned ( gi|15 ): AGGCCTAAATTAAAATATTGTTTGTTTGCCCCTTCTGACCAACCCAAAACAATTGCGC
Unaligned ( gi|18 ): AAGGCTTAAATTAAAATATTGTTTGTTCATCCCT
Alignments
lowQualScore : 1 2222222 11 1111 111111 2222 55555555555555 2222222 11 222222 11 44444 1 11111 33333333333333333333 5555555555555555555555555 222222 1111 1111111 1111
lowQualScore : 99 1 4444444 888 1 66 33 2222 666666 5 2222 5 44444444444444 6 0 1111111 44 2 5 8 000000 0 11 1 0 33333 0 55555 0 4 4 4 66 4 66 8 66666666666666666666 6666666666666666666666666 66 3 66 5 66 66 22 222222 88 0000 5 5 6666666 7777 44
lowQualScore : .. . ....... ... . .. .. .... ...... . .... . .............. . . ....... .. . . . ...... . .. . . ..... . ..... . . . . .. . .. . .................... ......................... .. . .. . .. .. .. ...... .. .... . . ....... .... ..
lowQualScore : 22 7 0000000 888 4 99 66 1111 444444 7 1111 0 88888888888888 4 8 7777777 55 8 0 0 888888 6 00 0 8 22222 8 88888 4 4 4 4 11 4 11 9 11111111111111111111 0000000000000000000000000 99 6 99 0 99 44 99 000000 11 6666 0 0 0000000 0000 55
consensus : GCCTAAA--AAATAAAACTGTT--TGTTCGT---TTCCGATTTCATGGCCC--AAAAA--AA----TAG------GGTAGGT-A----GGGATTTTTTTTTT-----GGA---TCTTTTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NATGTGTTCNAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
Reference ( family-1032 ) : GCCTAAA--AAATAAAACTGTT--TGTTTGT---TTCCGATTTCATGGCCC--AAAAA--AA----TAG------GGTAGGT-A----GGGATTTTTTTTCT-----GAA---TCTTTTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACGAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC-NNNTGTGTTCNAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
gi|1 : GCCTAAA--AAATAAAATTGTTAATGCTCGT---TTCCGATTTCATGGCCC--AAAAA--AA----TAG------GGTAGGT-A----GGGATTTTTTTTTTTTTTTAAA---TTTTTTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAGTGGTACATCAAGTATTTTAAACATGTTTTGTATGTTGTCTATGTGGTTTGAATGTAAATGACAGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATCTCTGCACTTAATAGA--AGACCCTCATCCAGGCATCTTATTGATGAAATGTGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------GCT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TG---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGTT-GTTGGCTGTAAAATCACAACCCA
gi|10 : G-TTTTTGCTAGGATTC-------G-GGGTCT--AAG-AAC--CCCTACAA-AATAATTCTA--------------------AGGATCCCAACACC-AATTTTGCGGGTCTCGATT--AT-AGG-A---CA-TGT--TGATCTGCATC--GCATT---TTTAT-T----T-T--ATTGTCATCCGTATATTCAT----G--AACACA
gi|11 : CTAAA--AAA--AAA---TT--TGTTTGC---TTTCGATTTCATGGCCC--AAAAA--AA----TAGGGTATAGGTAGGT-A----GGGATTTTTTTTa
gi|12 : ggttgtactgaaccaagcatttatttacctgctttgggCCTAAATTAAA-AAAA-TGTT--TGTTTGTCGCTTCCGGCCT----ACCC--AAAAC--AA----TCC------CGCCGGTCA----GGAATTTTTTTTTT-----
gi|13 : GCCAAAA--AACTAAAAC--------TTCAT---TTCTGGT----TGGCCCTGAAAAAATAA----TAG------AGTTGGT-AAAC-AGGATTTTTTCTTT-----------TCTCTTCTTTTTtgtatccaaatttt
gi|14 : gGGT-TTTTCCCTAGGATTTTTAATTTTGGGGT-C--CAGAAAA--ACATAAAATAAT--TTTTA--------------------AGGCTT------CC-AA--------------Att
gi|16 : GTATGTTATCTATGTGCTTTTAATGTTTAAGAATGTAAATTTAGATA-AAa
gi|17 : CCTAAA--AAATTAA-----T--TGTTTGT---TTCTGATTTCATGGCCC--AAAA
gi|2 : aGCCTAAA--AAAAAAAACTGTT--T-----------CCTATTTCATCGTCA--AAAAA--AAGTAATAG------GGTAGGT-A----GGGAG--------------GGACATTTTTTTTTTTTTGAAA-------CTTGATGTTATGT---GTCAATGGTACATCATGTATTTTTAACATGTTTTGTTTGTTATTTATATGCTTTTAATGTTTATGAATGTAAATTTAGCTTTAAAACAACCAAACAAAATT-T-ACCCCACCCCCACACCTTATGCTTGCCATTTCTGTACTTAATAAT--AGCCACTCATCCAGGCATCATATTGAC-TT-TGTGTTC-AATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCAGGCTTTTCCCTAGGAGTTTTCATTTTTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC--A--------------ACT--ATTAGGAATTTCA-T-------NNNN-NNNNNNC-TTTAATTTAT-T----TCTTTGTTA-TAAGTTTTAATCC
gi|3 : tcgtttttatcaagaagTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAGTGGTACATCATGTATTTTTGACATGTTTTGTATGTGATATATGTGCTTTGAATGCAAATGAATATAAATTTACATA-AAAACAACCAAACAATATTTT-AAAAAA-------ATCTTATGCATGTCATTTCTGCACTTAATAAC--AGACATCCATCCTATTATCTTA--------------TCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNGGGTTTTTCATTTGTGGGT-T--AAG-GAC--CACTACAATAATATTTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATGAGGC------------T----T-TTTATTG-CAACCTTTTATTCATAATGA--AAGACAGCT-GTCAGCTGTAAAATCACAACCCA
gi|4 : TTGAAA-------CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTTGAT--AAAACAACCAAAAAAATTTGT-TAAAAT-----ACAC------CTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGTCATCTTATTGAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG--------------TCCCTAGGATTTTTCATTTGTAGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC------------T----T-TTTATTA-CAACCTTTTATTCAT----GAAAAGACAGCCAGTCAGCTGTAAAATCACAACACA
gi|5 : c--TGTTTGT---TTCCGATTTTATGGCAA--ACAAA--AA----TAG------TGTAGGT-ATGTAGGGATTTTTTT---------AA---TCTT----------------------GATGTTATGTTGTGTAGATGGTGTATCATGCATTTTTAGCATGTTTTGTATGTTATCTGTGTAATTTTAAAGTTTATGATGGTTAATTTAGATT-AAAACAACCAAATGAAATTGTAAAAAAA-----ATACCTTCTGCTTGTCATTTCTGCATTTAATAATAAAAACACCCATTCAGACATCTTATTGAg
gi|6 : attaacatgcttaaggcctaacaatgGG-TTTACCCTATGATTTTTCATTTGGGGGC-TCAAAG-AAA--CCCTACAATTTTA-TTTTACGGGTATAAGCATAAATTTTAGGGTT------CT-TG--------------ACTTAATTAGACA--TCATTGTCATGATCTG-CGAGTCC-TT---TTCAT-TATTAT-TTTATTG-
gi|7 : --TGTTTTT---TTCCGATTTCATGGC----AAAAAC-AA----TAG------GGAAGGT-A----GGAAG--------------GGA---T---TTTTTTTTAAAAAAAAAAACTTGATGTTATGTTGTGTCAATGGAACACCATGCATTTTTAACATGTTTAATATGTTATATAttagattgtccccaacagttgtctgacatgtaaatatgcaatcc
gi|8 : taaactgaatgtcttaatgaggccaaaaa-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GACACCCCTACAATAATA-TTTTA--------------------AGGGTC------CCCAA--------------ACT--ATAAGGCA--TCA-TGC--TGATTTG-ATAAGGC-TT---TTTA--T----T-TTTATTG-CAACCTTTTATTCGT----G--AAGACA--------GCTGTAAAATCACAACCCA
gi|9 : GG-TTTTCCATAGGACTTTTCATTTTGGGGT-T-------------CTACAAAAATA-TATCA--------------------AGGGTCGCAACACC-AATTTTCGGGATCCCGATT--ATAAGACA--TTA-TGT--TGATCTG--CAGCGCATT---TTTATAT----T-TTTGT---CATCCATTTATTCAT----G--AACACg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGGCCTAAATTAAAATATTGTTTGTTTGCCCCTTCTGACCAACCCAAAACAATTGCGC
Unaligned ( gi|18 ): AAGGCTTAAATTAAAATATTGTTTGTTCATCCCT
Alignments
lowQualScore : 1 2222222 1 1111 111111 11111111 666666666666666666 2222222 11 222222 11 1111 1 11111 33333333333333333333 5555555555555555555555555 222222 1111 1111111 1111
lowQualScore : 99 1 0000000 9999 1 888 1 2222 666666 66666666 66 111111111111111111 1111111 44 5 8 000000 0 11 1 7777 0 55555 4 4 4 66 4 66 8 66666666666666666666 6666666666666666666666666 66 3 66 5 66 66 22 222222 88 0000 5 5 6666666 7777 44
lowQualScore : .. . ....... .... . ... . .... ...... ........ .. .................. ....... .. . . ...... . .. . .... . ..... . . . .. . .. . .................... ......................... .. . .. . .. .. .. ...... .. .... . . ....... .... ..
lowQualScore : 22 7 0000000 9999 4 888 4 1111 444444 77777777 66 999999999999999999 7777777 55 0 0 888888 6 00 0 2222 8 88888 4 4 4 11 4 11 9 11111111111111111111 0000000000000000000000000 99 6 99 0 99 44 99 000000 11 6666 0 0 0000000 0000 55
consensus : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTA----G---GGATTTTTTTTTT-----GGA---TTTTTTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
Reference ( family-1032 ) : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTA----G---GGATTTTTTTTTT-----GGA---TCTTTTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NATGTGTTCNAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
gi|1 : GCCTAAA--AAATAAAATTGTTAATGCT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTA----G---GGATTTTTTTTTTTTTTTAAA---TTTTTTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAGTGGTACATCAAGTATTTTAAACATGTTTTGTATGTTGTCTATGTGGTTTGAATGTAAATGACAGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATCTCTGCACTTAATAGA--AGACCCTCATCCAGGCATCTTATTGATGAAATGTGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------GCT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TG---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGTT-GTTGGCTGTAAAATCACAACCCA
gi|10 : G-TTTTTGCTAGGATTC-------G-GGGTCT--AAG-AAC--CCCTACAA-AATAATTCTA--------------------AGGATCCCAACACC-AATTTTGCGGGTCTCGATT--AT-AGG-A---CA-TGT--TGATCTGCATC--GCATT---TTTAT-T----T-T--ATTGTCATCCGTATATTCAT----G--AACACA
gi|11 : CTAAA--AAA--AAA---TT--TGTT---TGCTTTCGATTTCATGGCCC---AAAAA-AA----TAGGGTATAGGTAGGTA----G---GGATTTTTTTTa
gi|12 : ggttgtactgaaccaagcatttatttacctgctttgggCCTAAATTAAA-AAAA-TGTT--TGTTTGTCGCTTCCGGCCT----ACCC---AAAAC-AA----TCC------CGCCGGTC----A---GGAATTTTTTTTT-----
gi|13 : GCCAAAA--AACTAAAACT--------T---CATTTCTGGTT----GGCCCTGAAAAAATAA----TAG------AGTTGGTA----AACAGGATTTTTTCTTT-----TC----TCTTCTTTTTTTttgtatccaaatttt
gi|14 : gGGT-TTTTCCCTAGGATTTTTAATTTTGGGGT-C--CAGAAAA--ACATAAAATAAT--TTTTA--------------------AGGCTT------CC-AA--------------A
gi|16 : GTATGTTATCTATGTGCTTTTAATGTTTAAGAATGTAAATTTAGATA-AAa
gi|17 : CCTAAA--AAATTAA-----T--TGTT---TGTTTCTGATTTCATGGCCC---AAAA
gi|2 : aGCCTAAA--AAAAAAAACTGTT--T-----------CCTATTTCATCGTCA---AAAAA-AAGTAATAG------GGTAGGTA----G---GGAG--------------GGACATTTTTTTTTTTTTGAAA-------CTTGATGTTATGT---GTCAATGGTACATCATGTATTTTTAACATGTTTTGTTTGTTATTTATATGCTTTTAATGTTTATGAATGTAAATTTAGCTTTAAAACAACCAAACAAAATT-T-ACCCCACCCCCACACCTTATGCTTGCCATTTCTGTACTTAATAAT--AGCCACTCATCCAGGCATCATATTGAC--TTTGTGTTC-AATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCAGGCTTTTCCCTAGGAGTTTTCATTTTTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC--A--------------ACT--ATTAGGAATTTCA-T-------NNNN-NNNNNNC-TTTAATTTAT-T----TCTTTGTTA-TAAGTTTTAATCC
gi|3 : tcgtttttatcaagaagTTTTTTTGAAA-------CTTGATGTTATGTTGTGTCAGTGGTACATCATGTATTTTTGACATGTTTTGTATGTGATATATGTGCTTTGAATGCAAATGAATATAAATTTACATA-AAAACAACCAAACAATATTTT-AAAAAA-------ATCTTATGCATGTCATTTCTGCACTTAATAAC--AGACATCCATCCTATTATCTTATCGAN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG-------------TTTTTCATTTGTGGGT-T--AAG-GAC--CACTACAATAATATTTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATGAGGC------------T----T-TTTATTG-CAACCTTTTATTCATAATGA--AAGACAGCT-GTCAGCTGTAAAATCACAACCCA
gi|4 : TTGAAA-------CTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTTGAT--AAAACAACCAAAAAAATTTGT-TAAAAT-----ACAC------CTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGTCATCTTATTGAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG--------------TCCCTAGGATTTTTCATTTGTAGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC------------T----T-TTTATTA-CAACCTTTTATTCAT----GAAAAGACAGCCAGTCAGCTGTAAAATCACAACACA
gi|5 : c--TGTT---TGTTTCCGATTTTATGGCAA---ACAAA-AA----TAG------TGTAGGTATGTAG---GGATTTTTTT---------------------------AAT-------CTTGATGTTATGTTGTGTAGATGGTGTATCATGCATTTTTAGCATGTTTTGTATGTTATCTGTGTAATTTTAAAGTTTATGATGGTTAATTTAGATT-AAAACAACCAAATGAAATTGTAAAAAAA-----ATACCTTCTGCTTGTCATTTCTGCATTTAATAATAAAAACACCCATTCAGACATCTTATTGAg
gi|6 : attaacatgcttaaggcctaacaatgGG-TTTACCCTATGATTTTTCATTTGGGGGC-TCAAAG-AAA--CCCTACAATTTTA-TTTTACGGGTATAAGCATAAATTTTAGGGTT------CT-TG--------------ACTTAATTAGACA--TCATTGTCATGATCTG-CGAGTCC-TT---TTCAT-TATTAT-TTTATTG-
gi|7 : --TGTT---TTTTTCCGATTTCATGGC-----AAAAACAA----TAG------GGAAGGTA----G---GAAG--------------GGA---T---TTTTTTTTAAAAAAAAAAACTTGATGTTATGTTGTGTCAATGGAACACCATGCATTTTTAACATGTTTAATATGTTATATAttagattgtccccaacagttgtctgacatgtaaatatgcaatcc
gi|8 : taaactgaatgtcttaatgaggccaaaaa-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GACACCCCTACAATAATA-TTTTA--------------------AGGGTC------CCCAA--------------ACT--ATAAGGCA--TCA-TGC--TGATTTG-ATAAGGC-TT---TTTA--T----T-TTTATTG-CAACCTTTTATTCGT----G--AAGACA--------GCTGTAAAATCACAACCCA
gi|9 : GG-TTTTCCATAGGACTTTTCATTTTGGGGT-T-------------CTACAAAAATA-TATCA--------------------AGGGTCGCAACACC-AATTTTCGGGATCCCGATT--ATAAGACA--TTA-TGT--TGATCTG--CAGCGCATT---TTTATAT----T-TTTGT---CATCCATTTATTCAT----G--AACACg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGGCCTAAATTAAAATATTGTTTGTTTGCCCCTTCTGACCAACCCAAAACAATTGCGC
Unaligned ( gi|18 ): AAGGCTTAAATTAAAATATTGTTTGTTCATCCCT
Alignments
lowQualScore : 1 2222222 1 1111 111111 111 666666666666666666666 2222222 11 222222 11 1111 11111 33333333333333333333 5555555555555555555555555 222222 1111 1111111 1111
lowQualScore : 99 1 0000000 9999 1 888 1 2222 666666 000 000000000000000000000 1111111 44 5 8 000000 0 11 1 5555 8 55555 4 4 4 66 4 66 8 66666666666666666666 6666666666666666666666666 66 3 66 5 66 66 22 222222 88 0000 5 5 6666666 7777 44
lowQualScore : .. . ....... .... . ... . .... ...... ... ..................... ....... .. . . ...... . .. . .... . ..... . . . .. . .. . .................... ......................... .. . .. . .. .. .. ...... .. .... . . ....... .... ..
lowQualScore : 22 7 0000000 9999 4 888 4 1111 444444 000 777777777777777777777 7777777 55 0 0 888888 6 00 0 8888 2 88888 4 4 4 11 4 11 9 11111111111111111111 0000000000000000000000000 99 6 99 0 99 44 99 000000 11 6666 0 0 0000000 0000 55
consensus : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGANTTTTTTTTT-----GGA---TTTTTTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
Reference ( family-1032 ) : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGATTTTTTTTTT-----GGA---TTTTTTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
gi|1 : GCCTAAA--AAATAAAATTGTTAATGCT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGATTTTTTTTTTTTTTTAAA---TTTTTTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAGTGGTACATCAAGTATTTTAAACATGTTTTGTATGTTGTCTATGTGGTTTGAATGTAAATGACAGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATCTCTGCACTTAATAGA--AGACCCTCATCCAGGCATCTTATTGATGAAATGTGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------GCT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TG---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGTT-GTTGGCTGTAAAATCACAACCCA
gi|10 : G-TTTTTGCTAGGATTC-------G-GGGTCT--AAG-AAC--CCCTACAA-AATAATTCTA--------------------AGGATCCCAACACC-AATTTTGCGGGTCTCGATT--AT-AGG-A---CA-TGT--TGATCTGCATC--GCATT---TTTAT-T----T-T--ATTGTCATCCGTATATTCAT----G--AACACA
gi|11 : CTAAA--AAA--AAA---TT--TGTT---TGCTTTCGATTTCATGGCCC---AAAAA-AA----TAGGGTATAGGTAGGTAG---GGATTTTTTTTa
gi|12 : ggttgtactgaaccaagcatttatttacctgctttgggCCTAAATTAAA-AAAA-TGTT--TGTTTGTCGCTTCCGGCCT----ACCC---AAAAC-AA----TCC------CGCCGGTCA---GGAATTTTTTTTT-----
gi|13 : GCCAAAA--AACTAAAACT--------T---CATTTCTGGTT----GGCCCTGAAAAAATAA----TAG------AGTTGGTAAACAGGATTTTTTCTTT-----------TCTCTTCTT-------TTTttgtatccaaatttt
gi|14 : gGGT-TTTTCCCTAGGATTTTTAATTTTGGGGT-C--CAGAAAA--ACATAAAATAAT--TTTTA--------------------AGGCTT------CC-AA--------------Att
gi|16 : GTATGTTATCTATGTGCTTTTAATGTTTAAGAATGTAAATTTAGATA-AAa
gi|17 : CCTAAA--AAATTAA-----T--TGTT---TGTTTCTGATTTCATGGCCC---AAAA
gi|2 : aGCCTAAA--AAAAAAAACTGTT--T-----------CCTATTTCATCGTCA---AAAAA-AAGTAATAG------GGTAGGTAG---GGAG--------------GGACATTTTTTTTTT-------TTTGAAACTTGATGTTATGT---GTCAATGGTACATCATGTATTTTTAACATGTTTTGTTTGTTATTTATATGCTTTTAATGTTTATGAATGTAAATTTAGCTTTAAAACAACCAAACAAAATT-T-ACCCCACCCCCACACCTTATGCTTGCCATTTCTGTACTTAATAAT--AGCCACTCATCCAGGCATCATATTGAC--TTTGTGTTC-AATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCAGGCTTTTCCCTAGGAGTTTTCATTTTTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC--A--------------ACT--ATTAGGAATTTCA-T-------NNNN-NNNNNNC-TTTAATTTAT-T----TCTTTGTTA-TAAGTTTTAATCC
gi|3 : tcgtttttatcaagaagTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAGTGGTACATCATGTATTTTTGACATGTTTTGTATGTGATATATGTGCTTTGAATGCAAATGAATATAAATTTACATA-AAAACAACCAAACAATATTTT-AAAAAA-------ATCTTATGCATGTCATTTCTGCACTTAATAAC--AGACATCCATCCTATTATCTTATCGAN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG-------------TTTTTCATTTGTGGGT-T--AAG-GAC--CACTACAATAATATTTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATGAGGC------------T----T-TTTATTG-CAACCTTTTATTCATAATGA--AAGACAGCT-GTCAGCTGTAAAATCACAACCCA
gi|4 : TTGAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTTGAT--AAAACAACCAAAAAAATTTGT-TAAAAT-----ACAC------CTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGTCATCTTATTGAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG--------------TCCCTAGGATTTTTCATTTGTAGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC------------T----T-TTTATTA-CAACCTTTTATTCAT----GAAAAGACAGCCAGTCAGCTGTAAAATCACAACACA
gi|5 : c--TGTT---TGTTTCCGATTTTATGGCAA---ACAAA-AA----TAG------TGTAGGTAT---GTAG--------------GGA---TTTTTTT-------------AATCTTGATGTTATGTTGTGTAGATGGTGTATCATGCATTTTTAGCATGTTTTGTATGTTATCTGTGTAATTTTAAAGTTTATGATGGTTAATTTAGATT-AAAACAACCAAATGAAATTGTAAAAAAA-----ATACCTTCTGCTTGTCATTTCTGCATTTAATAATAAAAACACCCATTCAGACATCTTATTGAg
gi|6 : attaacatgcttaaggcctaacaatgGG-TTTACCCTATGATTTTTCATTTGGGGGC-TCAAAG-AAA--CCCTACAATTTTA-TTTTACGGGTATAAGCATAAATTTTAGGGTT------CT-TG--------------ACTTAATTAGACA--TCATTGTCATGATCTG-CGAGTCC-TT---TTCAT-TATTAT-TTTATTG-
gi|7 : --TGTT---TTTTTCCGATTTCATGGC-----AAAAACAA----TAG------GGAAGGTAG---GAAG--------------GGA---TTTTTTTTTAAAAAAA---AAAACTTGATGTTATGTTGTGTCAATGGAACACCATGCATTTTTAACATGTTTAATATGTTATATAttagattgtccccaacagttgtctgacatgtaaatatgcaatcc
gi|8 : taaactgaatgtcttaatgaggccaaaaa-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GACACCCCTACAATAATA-TTTTA--------------------AGGGTC------CCCAA--------------ACT--ATAAGGCA--TCA-TGC--TGATTTG-ATAAGGC-TT---TTTA--T----T-TTTATTG-CAACCTTTTATTCGT----G--AAGACA--------GCTGTAAAATCACAACCCA
gi|9 : GG-TTTTCCATAGGACTTTTCATTTTGGGGT-T-------------CTACAAAAATA-TATCA--------------------AGGGTCGCAACACC-AATTTTCGGGATCCCGATT--ATAAGACA--TTA-TGT--TGATCTG--CAGCGCATT---TTTATAT----T-TTTGT---CATCCATTTATTCAT----G--AACACg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGGCCTAAATTAAAATATTGTTTGTTTGCCCCTTCTGACCAACCCAAAACAATTGCGC
Unaligned ( gi|18 ): AAGGCTTAAATTAAAATATTGTTTGTTCATCCCT
Alignments
lowQualScore : 1 2222222 1 1111 111111 111 555555555555555555555 1111111 11 222222 11 1111 11111 33333333333333333333 5555555555555555555555555 222222 1111 1111111 1111
lowQualScore : 99 1 0000000 9999 1 888 1 2222 666666 000 666666666666666666666 3 8888888 44 5 8 000000 0 11 1 5555 8 55555 4 4 4 66 4 66 8 66666666666666666666 6666666666666666666666666 66 3 66 5 66 66 22 222222 88 0000 5 5 6666666 7777 44
lowQualScore : .. . ....... .... . ... . .... ...... ... ..................... . ....... .. . . ...... . .. . .... . ..... . . . .. . .. . .................... ......................... .. . .. . .. .. .. ...... .. .... . . ....... .... ..
lowQualScore : 22 7 0000000 9999 4 888 4 1111 444444 000 777777777777777777777 8 6666666 55 0 0 888888 6 00 0 8888 2 88888 4 4 4 11 4 11 9 11111111111111111111 0000000000000000000000000 99 6 99 0 99 44 99 000000 11 6666 0 0 0000000 0000 55
consensus : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGANTTTTTTTTT-----GGA---TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
Reference ( family-1032 ) : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGANTTTTTTTTT-----GGA---TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
gi|1 : GCCTAAA--AAATAAAATTGTTAATGCT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGATTTTTTTTTTTTTTTAAA---TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAGTGGTACATCAAGTATTTTAAACATGTTTTGTATGTTGTCTATGTGGTTTGAATGTAAATGACAGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATCTCTGCACTTAATAGA--AGACCCTCATCCAGGCATCTTATTGATGAAATGTGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------GCT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TG---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGTT-GTTGGCTGTAAAATCACAACCCA
gi|10 : G-TTTTTGCTAGGATTC-------G-GGGTCT--AAG-AAC--CCCTACAA-AATAATTCTA--------------------AGGATCCCAACACC-AATTTTGCGGGTCTCGATT--AT-AGG-A---CA-TGT--TGATCTGCATC--GCATT---TTTAT-T----T-T--ATTGTCATCCGTATATTCAT----G--AACACA
gi|11 : CTAAA--AAA--AAA---TT--TGTT---TGCTTTCGATTTCATGGCCC---AAAAA-AA----TAGGGTATAGGTAGGTAG---GGATTTTTTTTa
gi|12 : ggttgtactgaaccaagcatttatttacctgctttgggCCTAAATTAAA-AAAA-TGTT--TGTTTGTCGCTTCCGGCCT----ACCC---AAAAC-AA----TCC------CGCCGGTCA---GGAATTTTTTTTT-----
gi|13 : GCCAAAA--AACTAAAACT--------T---CATTTCTGGTT----GGCCCTGAAAAAATAA----TAG------AGTTGGTAAACAGGATTTTTTCTTT-----TC----TCTTCTTTTTTT-------ttgtatccaaatttt
gi|14 : gGGT-TTTTCCCTAGGATTTTTAATTTTGGGGT-C--CAGAAAA--ACATAAAATAAT--TTTTA--------------------AGGCTT------CC-AA--------------A
gi|16 : GTATGTTATCTATGTGCTTTTAATGTTTAAGAATGTAAATTTAGATA-AAa
gi|17 : CCTAAA--AAATTAA-----T--TGTT---TGTTTCTGATTTCATGGCCC---AAAA
gi|2 : aGCCTAAA--AAAAAAAACTGTT--T-----------CCTATTTCATCGTCA---AAAAA-AAGTAATAG------GGTAGGTAG---GGAG--------------GGACATTTTTTTTTTTTT-------GAAACTTGATGTTATGT---GTCAATGGTACATCATGTATTTTTAACATGTTTTGTTTGTTATTTATATGCTTTTAATGTTTATGAATGTAAATTTAGCTTTAAAACAACCAAACAAAATT-T-ACCCCACCCCCACACCTTATGCTTGCCATTTCTGTACTTAATAAT--AGCCACTCATCCAGGCATCATATTGAC--TTTGTGTTC-AATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCAGGCTTTTCCCTAGGAGTTTTCATTTTTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC--A--------------ACT--ATTAGGAATTTCA-T-------NNNN-NNNNNNC-TTTAATTTAT-T----TCTTTGTTA-TAAGTTTTAATCC
gi|3 : tcgtttttatcaagaagTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAGTGGTACATCATGTATTTTTGACATGTTTTGTATGTGATATATGTGCTTTGAATGCAAATGAATATAAATTTACATA-AAAACAACCAAACAATATTTT-AAAAAA-------ATCTTATGCATGTCATTTCTGCACTTAATAAC--AGACATCCATCCTATTATCTTATCGAN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG-------------TTTTTCATTTGTGGGT-T--AAG-GAC--CACTACAATAATATTTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATGAGGC------------T----T-TTTATTG-CAACCTTTTATTCATAATGA--AAGACAGCT-GTCAGCTGTAAAATCACAACCCA
gi|4 : TT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTTGAT--AAAACAACCAAAAAAATTTGT-TAAAAT-----ACAC------CTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGTCATCTTATTGAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG--------------TCCCTAGGATTTTTCATTTGTAGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC------------T----T-TTTATTA-CAACCTTTTATTCAT----GAAAAGACAGCCAGTCAGCTGTAAAATCACAACACA
gi|5 : c--TGTT---TGTTTCCGATTTTATGGCAA---ACAAA-AA----TAG------TGTAGGTAT---GTAG--------------GGA---TTTTTTT-------------AATCTTGATGTTATGTTGTGTAGATGGTGTATCATGCATTTTTAGCATGTTTTGTATGTTATCTGTGTAATTTTAAAGTTTATGATGGTTAATTTAGATT-AAAACAACCAAATGAAATTGTAAAAAAA-----ATACCTTCTGCTTGTCATTTCTGCATTTAATAATAAAAACACCCATTCAGACATCTTATTGAg
gi|6 : attaacatgcttaaggcctaacaatgGG-TTTACCCTATGATTTTTCATTTGGGGGC-TCAAAG-AAA--CCCTACAATTTTA-TTTTACGGGTATAAGCATAAATTTTAGGGTT------CT-TG--------------ACTTAATTAGACA--TCATTGTCATGATCTG-CGAGTCC-TT---TTCAT-TATTAT-TTTATTG-
gi|7 : --TGTT---TTTTTCCGATTTCATGGC-----AAAAACAA----TAG------GGAAGGTAG---GAAG--------------GGA---T---TTTTTTTTAAAAAAAAAAACTTGATGTTATGTTGTGTCAATGGAACACCATGCATTTTTAACATGTTTAATATGTTATATAttagattgtccccaacagttgtctgacatgtaaatatgcaatcc
gi|8 : taaactgaatgtcttaatgaggccaaaaa-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GACACCCCTACAATAATA-TTTTA--------------------AGGGTC------CCCAA--------------ACT--ATAAGGCA--TCA-TGC--TGATTTG-ATAAGGC-TT---TTTA--T----T-TTTATTG-CAACCTTTTATTCGT----G--AAGACA--------GCTGTAAAATCACAACCCA
gi|9 : GG-TTTTCCATAGGACTTTTCATTTTGGGGT-T-------------CTACAAAAATA-TATCA--------------------AGGGTCGCAACACC-AATTTTCGGGATCCCGATT--ATAAGACA--TTA-TGT--TGATCTG--CAGCGCATT---TTTATAT----T-TTTGT---CATCCATTTATTCAT----G--AACACg
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGGCCTAAATTAAAATATTGTTTGTTTGCCCCTTCTGACCAACCCAAAACAATTGCGC
Unaligned ( gi|18 ): AAGGCTTAAATTAAAATATTGTTTGTTCATCCCT
Alignments
lowQualScore : 1 2222222 1 1111 111111 111 555555555555555555555 1111111 11 222222 11 1111 11111 33333333333333333333 5555555555555555555555555 222222 1111 1111111 1111
lowQualScore : 99 1 0000000 9999 1 888 1 2222 666666 000 666666666666666666666 3 8888888 44 5 8 000000 0 11 1 5555 8 55555 4 4 4 66 4 66 8 66666666666666666666 6666666666666666666666666 66 3 66 5 66 66 22 222222 88 0000 5 5 6666666 7777 44
lowQualScore : .. . ....... .... . ... . .... ...... ... ..................... . ....... .. . . ...... . .. . .... . ..... . . . .. . .. . .................... ......................... .. . .. . .. .. .. ...... .. .... . . ....... .... ..
lowQualScore : 22 7 0000000 9999 4 888 4 1111 444444 000 777777777777777777777 8 6666666 55 0 0 888888 6 00 0 8888 2 88888 4 4 4 11 4 11 9 11111111111111111111 0000000000000000000000000 99 6 99 0 99 44 99 000000 11 6666 0 0 0000000 0000 55
consensus : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGANTTTTTTTTT-----GGA---TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
Reference ( family-1032 ) : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGANTTTTTTTTT-----GGA---TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
gi|1 : GCCTAAA--AAATAAAATTGTTAATGCT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGATTTTTTTTTTTTTTTAAA---TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAGTGGTACATCAAGTATTTTAAACATGTTTTGTATGTTGTCTATGTGGTTTGAATGTAAATGACAGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATCTCTGCACTTAATAGA--AGACCCTCATCCAGGCATCTTATTGATGAAATGTGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------GCT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TG---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGTT-GTTGGCTGTAAAATCACAACCCA
gi|10 : G-TTTTTGCTAGGATTC-------G-GGGTCT--AAG-AAC--CCCTACAA-AATAATTCTA--------------------AGGATCCCAACACC-AATTTTGCGGGTCTCGATT--AT-AGG-A---CA-TGT--TGATCTGCATC--GCATT---TTTAT-T----T-T--ATTGTCATCCGTATATTCAT----G--AACACA
gi|11 : CTAAA--AAA--AAA---TT--TGTT---TGCTTTCGATTTCATGGCCC---AAAAA-AA----TAGGGTATAGGTAGGTAG---GGATTTTTTTTa
gi|12 : ggttgtactgaaccaagcatttatttacctgctttgggCCTAAATTAAA-AAAA-TGTT--TGTTTGTCGCTTCCGGCCT----ACCC---AAAAC-AA----TCC------CGCCGGTCA---GGAATTTTTTTTT-----
gi|13 : GCCAAAA--AACTAAAACT--------T---CATTTCTGGTT----GGCCCTGAAAAAATAA----TAG------AGTTGGTAAACAGGATTTTTTCTTT-----TC----TCTTCTTTTTTT-------ttgtatccaaatttt
gi|14 : gGGT-TTTTCCCTAGGATTTTTAATTTTGGGGT-C--CAGAAAA--ACATAAAATAAT--TTTTA--------------------AGGCTT------CC-AA--------------A
gi|16 : GTATGTTATCTATGTGCTTTTAATGTTTAAGAATGTAAATTTAGATA-AAa
gi|17 : CCTAAA--AAATTAA-----T--TGTT---TGTTTCTGATTTCATGGCCC---AAAA
gi|2 : aGCCTAAA--AAAAAAAACTGTT--T-----------CCTATTTCATCGTCA---AAAAA-AAGTAATAG------GGTAGGTAG---GGAG--------------GGACATTTTTTTTTTTTT-------GAAACTTGATGTTATGT---GTCAATGGTACATCATGTATTTTTAACATGTTTTGTTTGTTATTTATATGCTTTTAATGTTTATGAATGTAAATTTAGCTTTAAAACAACCAAACAAAATT-T-ACCCCACCCCCACACCTTATGCTTGCCATTTCTGTACTTAATAAT--AGCCACTCATCCAGGCATCATATTGAC--TTTGTGTTC-AATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCAGGCTTTTCCCTAGGAGTTTTCATTTTTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC--A--------------ACT--ATTAGGAATTTCA-T-------NNNN-NNNNNNC-TTTAATTTAT-T----TCTTTGTTA-TAAGTTTTAATCC
gi|3 : tcgtttttatcaagaagTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAGTGGTACATCATGTATTTTTGACATGTTTTGTATGTGATATATGTGCTTTGAATGCAAATGAATATAAATTTACATA-AAAACAACCAAACAATATTTT-AAAAAA-------ATCTTATGCATGTCATTTCTGCACTTAATAAC--AGACATCCATCCTATTATCTTATCGAN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG-------------TTTTTCATTTGTGGGT-T--AAG-GAC--CACTACAATAATATTTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATGAGGC------------T----T-TTTATTG-CAACCTTTTATTCATAATGA--AAGACAGCT-GTCAGCTGTAAAATCACAACCCA
gi|4 : TT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTTGAT--AAAACAACCAAAAAAATTTGT-TAAAAT-----ACAC------CTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGTCATCTTATTGAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG--------------TCCCTAGGATTTTTCATTTGTAGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC------------T----T-TTTATTA-CAACCTTTTATTCAT----GAAAAGACAGCCAGTCAGCTGTAAAATCACAACACA
gi|5 : c--TGTT---TGTTTCCGATTTTATGGCAA---ACAAA-AA----TAG------TGTAGGTAT---GTAG--------------GGA---TTTTTTT-------------AATCTTGATGTTATGTTGTGTAGATGGTGTATCATGCATTTTTAGCATGTTTTGTATGTTATCTGTGTAATTTTAAAGTTTATGATGGTTAATTTAGATT-AAAACAACCAAATGAAATTGTAAAAAAA-----ATACCTTCTGCTTGTCATTTCTGCATTTAATAATAAAAACACCCATTCAGACATCTTATTGAg
gi|6 : attaacatgcttaaggcctaacaatgGG-TTTACCCTATGATTTTTCATTTGGGGGC-TCAAAG-AAA--CCCTACAATTTTA-TTTTACGGGTATAAGCATAAATTTTAGGGTT------CT-TG--------------ACTTAATTAGACA--TCATTGTCATGATCTG-CGAGTCC-TT---TTCAT-TATTAT-TTTATTG-
gi|7 : --TGTT---TTTTTCCGATTTCATGGC-----AAAAACAA----TAG------GGAAGGTAG---GAAG--------------GGA---T---TTTTTTTTAAAAAAAAAAACTTGATGTTATGTTGTGTCAATGGAACACCATGCATTTTTAACATGTTTAATATGTTATATAttagattgtccccaacagttgtctgacatgtaaatatgcaatcc
gi|8 : taaactgaatgtcttaatgaggccaaaaa-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GACACCCCTACAATAATA-TTTTA--------------------AGGGTC------CCCAA--------------ACT--ATAAGGCA--TCA-TGC--TGATTTG-ATAAGGC-TT---TTTA--T----T-TTTATTG-CAACCTTTTATTCGT----G--AAGACA--------GCTGTAAAATCACAACCCA
gi|9 : GG-TTTTCCATAGGACTTTTCATTTTGGGGT-T-------------CTACAAAAATA-TATCA--------------------AGGGTCGCAACACC-AATTTTCGGGATCCCGATT--ATAAGACA--TTA-TGT--TGATCTG--CAGCGCATT---TTTATAT----T-TTTGT---CATCCATTTATTCAT----G--AACACg
blockSeqs : TT T CTGTT TGTC C TGA T GTAA GGTATA ACA TTTTTTCTTTTC C AAAAAAA TT T A CCCCCA AA G TT N ACAGA C G C CA A AC A CGGGTATAAGCATAAATTTT CCAACACCAATTTTGCGGGTCTCG TA T TT T CA CA NN TTTAA TA ATTA C T AATGA GCCA CA
blockSeqs : . T TGTT T C . C . . . GGGACAT T . A G . A . T NN N NNNNN . T . . . . T . GCAACACCAATTTTCGGGATCCCG . T . . . N AG ATT T . . . GAA GCT CA
blockSeqs : . A TT C C . . . . . GGGA T . A G . A . T NN . . . T . . . . . . CCCAA . T . . . A AG ATT T . . . G . .
blockSeqs : . . CT T T . . . . . GGGA . . T . . . . A . T . . . . . . CCAA . T . . . A GT TT T . . . G
blockSeqs : . . T T C . . . . . . . . G . . . . . . CCAA . A . . . C AG TT . . . . G
blockSeqs : T . . . . . . . . T . . . . . . CCAA . A . . . A GC . . . . .
blockSeqs : . . . . G . . . . . . CTTG . . . . . . . . . . . .
blockSeqs : . . . . . . . . CCA
blockSeqCons : TT***** GGGA***************** TT****
originalCons : GCCTAAA--AAATAAAACTGTT--TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGANTTTTTTTTT-----GGA---TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
finalCons : GCCTAAA--AAATAAAATT-----TGTT---CGTTTCCGATTTCATGGCCC---AAAAA-AA----TAG------GGTAGGTAG---GGAGGGA-----------------TTTTTTTTTTTT-------GAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGCTT----TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): AGGCCTAAATTAAAATATTGTTTGTTTGCCCCTTCTGACCAACCCAAAACAATTGCGC
Unaligned ( gi|18 ): AAGGCTTAAATTAAAATATTGTTTGTTCATCCCT
Alignments
lowQualScore : 11111111111 11111 1 1111 33333333333333 111 2222222 11 222222 11 1111 11111 33333333333333333333 5555555555555555555555555 222222 1111 1111111 1111
lowQualScore : 3 5 88888888888 11111 3 4444 99 5 99999999999999 1 111 1111111 44 5 8 000000 0 11 1 5555 8 55555 4 4 4 66 4 66 8 66666666666666666666 6666666666666666666666666 66 3 66 5 66 66 22 222222 88 0000 5 5 6666666 7777 44
lowQualScore : . . ........... ..... . .... .. . .............. . ... ....... .. . . ...... . .. . .... . ..... . . . .. . .. . .................... ......................... .. . .. . .. .. .. ...... .. .... . . ....... .... ..
lowQualScore : 5 7 44444444444 44444 3 2222 22 2 22222222222222 0 777 7777777 55 0 0 888888 6 00 0 8888 2 88888 4 4 4 11 4 11 9 11111111111111111111 0000000000000000000000000 99 6 99 0 99 44 99 000000 11 6666 0 0 0000000 0000 55
consensus : GCCTAAAAAATAA-AATT-----TGTTCGTTTCCGATTTCATGGCCC---AAAAA-AA----TAGGG--TAGGTAGGNAG--------------GGA---TTTTTTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
Reference ( family-1032 ) : GCCTAAAAAATAA-AATT-----TGTTCGTTTCCGATTTCATGGCCC---AAAAA-AA----TAGGG--TAGGTAGGGAG--------------GGA---TTTTTTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGNCATCTTATTGAC--NNTGTGTTCTAATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TT---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGCC-GTCGGCTGTAAAATCACAACCCA
gi|1 : GCCTAAAAAATAA-AATTGTTAATGCTCGTTTCCGATTTCATGGCCC---AAAAA-AA----TAGGG--TAGGTAGGGATTTTTTTTTTTTTTTAAA---TTTTTTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAGTGGTACATCAAGTATTTTAAACATGTTTTGTATGTTGTCTATGTGGTTTGAATGTAAATGACAGTAAATTTAGATA-AAAACAACCAAACAAAATTGT-AAAAAA-----ACACCTTATGCTTGTCATCTCTGCACTTAATAGA--AGACCCTCATCCAGGCATCTTATTGATGAAATGTGTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGG-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------GCT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC-TG---TTTAT-T----T-TTTATTG-CAACCTTTTATTCAT----G--AAGACAGTT-GTTGGCTGTAAAATCACAACCCA
gi|10 : G-TTTTTGCTAGGATTC-------G-GGGTCT--AAG-AAC--CCCTACAA-AATAATTCTA--------------------AGGATCCCAACACC-AATTTTGCGGGTCTCGATT--AT-AGG-A---CA-TGT--TGATCTGCATC--GCATT---TTTAT-T----T-T--ATTGTCATCCGTATATTCAT----G--AACACA
gi|11 : CTAAAAAA--A-AATT-----TGTTTGCTTTCGATTTCATGGCCC---AAAAA-AA----TAGGGTATAGGTAGGTAG--------------GGA---TTTTTTTTa
gi|13 : ggttgtactgaaccaagcatttatttacctgctttgggGCCAAAAAACTAA-AACT-----T---CATTTCTGGTT----GGCCCTGAAAAAATAA----TAGAG--TTGGTAAACAG--------------G-A---TTTTTTCTT-------TT
gi|14 : gGGT-TTTTCCCTAGGATTTTTAATTTTGGGGT-C--CAGAAAA--ACATAAAATAAT--TTTTA--------------------AGGCTT------CC-AA--------------Actcttcttttttt
gi|16 : GTATGTTATCTATGTGCTTTTAATGTTTAAGAATGTAAATTTAGATA-AAa
gi|17 : CCTAAAAAATTA-A--T-----TGTTTGTTTCTGATTTCATGGCCC---AAAA
gi|2 : aGCCTAAAAAAAAA-AACT----------GTTTCCTATTTCATCGTCA---AAAAA-AAGTAATAGGG--TAGGTAGGGAG--------------GGACATTTTTTTTTT-------TTTGAAACTTGATGTTATGT---GTCAATGGTACATCATGTATTTTTAACATGTTTTGTTTGTTATTTATATGCTTTTAATGTTTATGAATGTAAATTTAGCTTTAAAACAACCAAACAAAATT-T-ACCCCACCCCCACACCTTATGCTTGCCATTTCTGTACTTAATAAT--AGCCACTCATCCAGGCATCATATTGAC--TTTGTGTTC-AATTGGGGCCGACAGACCTGATTTGGGAGATATCAGGTTCTGGGACAGACCAGGCTTTTCCCTAGGAGTTTTCATTTTTGGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC--A--------------ACT--ATTAGGAATTTCA-T-------NNNN-NNNNNNC-TTTAATTTAT-T----TCTTTGTTA-TAAGTTTTAATCC
gi|3 : tcgtttttatcaagaagTTTT-------TTTGAAACTTGATGTTATGTTGTGTCAGTGGTACATCATGTATTTTTGACATGTTTTGTATGTGATATATGTGCTTTGAATGCAAATGAATATAAATTTACATA-AAAACAACCAAACAATATTTT-AAAAAA-------ATCTTATGCATGTCATTTCTGCACTTAATAAC--AGACATCCATCCTATTATCTTATCGAN--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG-------------TTTTTCATTTGTGGGT-T--AAG-GAC--CACTACAATAATATTTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATGAGGC------------T----T-TTTATTG-CAACCTTTTATTCATAATGA--AAGACAGCT-GTCAGCTGTAAAATCACAACCCA
gi|4 : TTGAAACTTGATGTTATGTTGTGTCAATGGTACATCATGTATTTTTAACATGTTTTGTATGTTATCTATGTGCTTTTAATGTTTATGAATGTAAATTTTGAT--AAAACAACCAAAAAAATTTGT-TAAAAT-----ACAC------CTTGTCATTTCTGCACTTAATAAT--AGACACCCATCCAGTCATCTTATTGAC--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGG--------------TCCCTAGGATTTTTCATTTGTAGGT-T--AAG-GAC--CCCTACAATAATA-TTTTA--------------------AGGGTC------CC-AA--------------ACT--ATTAGGCA--TCA-TGC--TGATCTG-ATAAGGC------------T----T-TTTATTA-CAACCTTTTATTCAT----GAAAAGACAGCCAGTCAGCTGTAAAATCACAACACA
gi|5 : cTAACAATG-----TGTTTGTTTCCGATTTTATGGCAA---ACAAA-AA----TAGTG--TAGGTATGTAG--------------GGA---TTTTTTT-------------AATCTTGATGTTATGTTGTGTAGATGGTGTATCATGCATTTTTAGCATGTTTTGTATGTTATCTGTGTAATTTTAAAGTTTATGATGGTTAATTTAGATT-AAAACAACCAAATGAAATTGTAAAAAAA-----ATACCTTCTGCTTGTCATTTCTGCATTTAATAATAAAAACACCCATTCAGACATCTTATTGAg
gi|6 : attaacatgcttaaggccGG-TTTACCCTATGATTTTTCATTTGGGGGC-TCAAAG-AAA--CCCTACAATTTTA-TTTTACGGGTATAAGCATAAATTTTAGGGTT------CT-TG--------------ACTTAATTAGACA--TCATTGTCATGATCTG-CGAGTCC-TT---TTCAT-TATTAT-TTTATTG-
gi|7 : AA-AAT-------GTTTTTTTCCGATTTCATGGC-----AAAAACAA----TAGGG--AAGGTAGGAAG--------------GGA---TTTTTTTTTAAAAAAA---AAAACTTGATGTTATGTTGTGTCAATGGAACACCATGCATTTTTAACATGTTTAATATGTTATATAttagattgtccccaacagttgtctgacatgtaaatatgcaatcc
gi|8 : taaactgaatgtcttaatgaggcca-TTTTCCCTAGGATTTTTCATTTGTGGGT-T--AAG-GACACCCCTACAATAATA-TTTTA--------------------AGGGTC------CCCAA--------------ACT--ATAAGGCA--TCA-TGC--TGATTTG-ATAAGGC-TT---TTTA--T----T-TTTATTG-CAACCTTTTATTCGT----G--AAGACA--------GCTGTAAAATCACAACCCA
gi|9 : GG-TTTTCCATAGGACTTTTCATTTTGGGGT-T-------------CTACAAAAATA-TATCA--------------------AGGGTCGCAACACC-AATTTTCGGGATCCCGATT--ATAAGACA--TTA-TGT--TGATCTG--CAGCGCATT---TTTATAT----T-TTTGT---CATCCATTTATTCAT----G--AACACg
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CCTAAATTAAAAAAATGTTTGTTTGTCGCTTCCGGCCTACCCAAAACAATCCCGCCGGTCAGGAATTTTTTTTTTTGTATCCAAATTTT
Unaligned ( gi|15 ): AGGCCTAAATTAAAATATTGTTTGTTTGCCCCTTCTGACCAACCCAAAACAATTGCGC
Unaligned ( gi|18 ): AAGGCTTAAATTAAAATATTGTTTGTTCATCCCT