lowQualScore : 1111111111111111111111111 11111111111111111111111111111111111111111111111111 1111111111111111111
lowQualScore : 4 2 1 1 22 2 0000000000000000000000000 22222 1 44444444 22222222222222222222222222222222222222222222222222 1 1 555555555 1 1 22 1 1 222222 1 22 1 1 0000000000000000000 1 1 22 1 11 8888888888888888888 1 22222222222 11 11 11 3333333333 111111
lowQualScore : 6 6 0 2 1 0 6 11 6666 33 1 5 6 3 5 7777777777777777777777777 1 3 00000 5 7 00000000 77 6 8 99999999999999999999999999999999999999999999999999 8 8 0 6 111111111 3 1 3 5 33 7 6 6 333333 8 2 0 22 5 99 7 6 4 0 4444444444444444444 1 5 5 6 33 6 6 6 6 6 2 6 3 33 5555555555555555555 3 2 8 55555555555 88 55 11 3 3 5 1 5 0000000000 5 1 5 111111 5
lowQualScore : . . . . . . . .. .... .. . . . . . ......................... . . ..... . . ........ .. . . .................................................. . . . . ......... . . . . .. . . . ...... . . . .. . .. . . . . ................... . . . . .. . . . . . . . . .. ................... . . . ........... .. .. .. . . . . . .......... . . . ...... .
lowQualScore : 0 0 0 5 2 0 2 55 2222 55 0 0 6 2 8 4444444444444444444444444 4 0 44444 3 0 22222222 00 0 0 66666666666666666666666666666666666666666666666666 2 0 8 7 000000000 5 5 3 3 77 0 0 0 000000 0 8 6 88 4 00 0 0 8 8 2222222222222222222 2 0 5 0 22 0 0 0 0 0 0 5 2 88 2222222222222222222 3 5 0 11111111111 00 00 33 7 5 7 9 7 0000000000 7 9 7 555555 6
consensus : AAAGCCTGGTGANTNAGATGTTGAGTATGATAGAACA-TTAAGAAAACGATTTTAAAGTAATATGATTAGTGCGCTCTAAAAACAAT--ATGTGACACTTT-T-T--T-GGAGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGT-AAACTG----TGATTATGAAAA-------CAATCAAACT-AAAA---T---GTAGGAAAT-TCAAGGGATATTAAA-CATTAA-T-ATTAAACTATGTTAAATCATACTAGCT-ATAAGCCTAAAACGATAAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAAATG-ATCATG---------CTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATACAGTAAGACNAAATG--AAAACTTGAANTA-C--AA---AAACA-ACATTTANTGAACATGAATTCATA-ACATGAA---AA--AT--AACCATGAACTTGT-TATTACACAAGTTCA-ATTTAATT-CACTTAATATTGAGTG-AATTAAAT-TGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
Reference ( gi|2 ) : AAAACTTGGTGA-TCAGATGTTGAGTATGATATAATA-TTTAGAAAATGACTCTAAAGTTATATGATAAGTGCGCTCTTAAAACACT--ATTTGACATTTTATAT-GA-GGAGTTTTACATTAATCAGTAATAAAGATGTTACTTTGAAAATCAGGCTATAGGTACATGCTGTAATTGGTGGTAAATGACAATATTCATTTCATGCTACTCAGT-ATATTGGGGTTAGTTATGAAAA-------CA------TT---AT---T---GTAGGACAT-TCAAGGGATATTCAA-CATGAGAT-ATTAAACTATGTTCAATCATAATAGCA-ATAAGCCTTAAACGATTAAATGACTAC------TAA-TGTTAATGCAACAAAGTACTTATGAAGCAAAA-TGTAACGACTGTTAATATTCAATGAA---------G---------CTAAACTACAGTAACATTGTTATTTAATGATTACAAAGCAACAATCCCTGTATTGTGACTGAAAGAGATATAGTAAGACCAAATG--AAATCTTGAAGCA-CAGAAAAGAAACA-ACATTTACTGAACATGAATTCATA-ACATGAA---AA--AT--AACCATGAACTTGTTTATAACACAAGTTCA-ATTTAATT-CACTCAATATTGAGTG-AATTAAAT-TGAACTTGTGTAATATGGTTAC------TTCTCTGAGGAAGATTTTTGAATGAAAA
gi|3 : AAAGCCTGGTGACTCAGATGTTGTGTATGATAGAATA-TTAAGAAAGTGATTTTAAAG-------ATTAGTGTGCTCTAAAAACAAT--ATGTGACACTTTCTCTAGT-GGAATTTTGCACTAAGTGGTTATAATTATGTTAATTTGAA--------TATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACCCTGT-AACCTG----TGATTATGAAAA-------CA------CTAAAATTGAT---GTGGAAAAC-TCAAGGGATATCAAA-CATTAATC-ATTAAACTATGTTCAATCATGCAAGCT-ATAAGGCTAAAAT-ATTAAATAACTAC------AAC-TGTTGGTGCAACAAAGTGGTTATGACGCAAAA-TGTTATGACTATTAATATTCATTGAA---------ATGCATCATTCTAAACTAAAGTAACATTGTGACTTAATGATTAC-GGGCAACCATTCCTGTATTATGGTTGAAGGAAATACAGCAAGACAAAATA--AAAC--------------------ACA-ACATTTAATGAACATGAATTCATA-ACATGAA---AA--
gi|4 : agaaatgaagaagcaaacagaatatctgtatgttatcttatgaaggcaattgaaggccaatttccagggtcagccattgatgtggctttcaatgatactgttgaagctggaactgataatttgcaAAAGTCTGGTGAATCAGATGTCGAGTATGGTAGAATA-TTAAGAAAATGATTCTAAAGCAATTTGATAAAGGCGCTCT-AAAACAAT--ATGTGATACTT----------GATTTTTAGG------AGTAATGATGATGTTACTTTGAAA-TCAGGTTAAAGAT-CAAGCTGTAATTGGTGGTAAATGACAGCATTTAATTCATGCTACTCAGT-A-ATCTG---TGATTATGAAAA-------CAATCAAATC---AA---T---GTAAGAAAT-TCAAGGGATATTAAA-CATTAAAC-ATTAAGCTATGTTAAATCTTACTAGTT-ATAAGCAAAAAACGATGAAATAACTAT------TAA-TGTGA--------------TTATGAAACAAAC-TGTTACGACTATAAATATTCATTG----------------------TAGACTAAAGTAACATTGGAACTTAATGATTACTGAGCAACCATTCCTGTATCATGGCTAAAGGAGATATAGTCAGACTAAA-GAAAAAACTTGAAATATCAAAAAg
gi|1 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaCCTGGTGAATGAGATGTTGATTATGATAGAACA-TT--------------AAAGTAATATGATTAGTGCGCTCTAAAAACA---------ACAT------------AAGTTTTGCACTTAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATATGTCTATGCTGTAATTGGTGGTAAATGAAAACATTCATTTCATGCTACTCAGT-AACCTG----TGATTATGAAAA-------CAATCAAATT---AA---T---TTAGGATAT-TCAAGGGATATTAAACCATAAACT-A-CAAACTATGTTAAAGTATACTTGCT-ATACGCATAAAACGATAAAATAACTAC------TTA-TGTTGGTGAAACAAAGTGATTATGACGCAAAA-TGTTTCGACTACTAATACTCATTGAAATGTATCATG---------CTTAACTAAAGTCACATTGTGACTTAATGATTACGGAGCAACTATTCCTGTATTATGGCTGAAGTAAATATAATAAGACCAAATG--AAGACTTGAAGTA-C--AATATAAACA-ACATTTCCTGAACATGAATTTATA-ACATGAA---AA--GT--AATCATGAACTTGTTTATTACA-ATGT-----TTTA-------TTAA-----AGTG-AATGAAGC-TTAATTTGTA-AATATtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgaacatgaattcataacaagaaatataa
gi|6 : atCCTGGTGACTAAGATGTTGAGTATGATA-AACAATTTAGAAAACGGCTTTAAAGTAATAT---AAGTG----------ACACTTAATTTGG----TT---------GAATTTTGCACTAAGCAGTAATGATGACGGTACTTTGATA-TCAGGATACAGGTATATACTGTAGATGGTGGTAAATAAGCGCATTCATTTCATGCTACTTAAT-A-ACTGCG----ATTATGAAAA-------CA------ATCAAAT---TAAAGTATGA-ATGTTAAGGAATATTCAA-CA--A------TAAACTATATTAAATCATACTAGCT-GTAAGCCTacacatattccagtttcgttaagcagaagtagaaaataaatcctgaaacatgtcacacaacaaagaacaacaaataatacctaaattt
gi|5 : atggatgtgcttttcaatgatgctgttgaagatggaactgatgatgatcaattgcatatttaaacgATGATTCGTGCGCTCC-AAAACAAT--ACGTGACATTTTATTT-TTTGGAGTTTTGCACTAAGCAGTAATTATAATGTTAATTTGAA--------TATAGGCAGATTTTGTAATTGATGGTAAATGACAACATTCATTTCATGCTACTCAGTTACAT----GTGA-TTATGAAAAAAACACTCAAA----CT---AA---T---GTAGGAAAT-TCAAGGGATATTAAA-C------T--TTAAACAATGTT-------ACTAGCTTATAAGTCCAAAATGAT-AAATAACTAC------TAAATATTGGTGCAACAAAGTGATTATGACGCAAAAATGTTATGACTATTGATATTCATTGAAATGCATCATG---------CTGAACTTAAGTAACATTGTGACGTAATGATTACGGAGCAACTATTCCTGTTTTATGGCTAAAGGAAATACAGTAGGATAAAATG--AAAACTTGAATTA-CTTA----AAACACATATTTAATGAACATGAATTCATA-ACATGaataagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcacataaatacgatagaccttaatgttaa
gi|20 : CAGTAATGATGATGTTACTTTG-AGATCGGGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacaacaaagaacaacacaatagacctaaattt
gi|8 : agGGATATTAAA-CATTTTATCATTAAA-TATGTTTAACCCTATCAGCT-ATAAACCTAACACGATAAAACAACTACATGTATTAA-TGTTAGTGCCGCAGGGTGAATATGAAGCAAGT-TTTTACGACTATTTAAGTTTAGTGAA---------t
gi|4 : ttattaaaagtgattacgaagcaggaaatgctTTTACTGAACATGAATTCATA-ACAAGAA---AT--AT--AA
gi|9 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaaaagtctggtgaatcagatgtcgagtatggtagaatattaagaaaatgattctaaagcaatttgataaaggcgctctaaaacaatatgtgatacttgatttttaggagtaatgatgatgttactttgaaatcaggttaaagatcaagctgtaattggtggtaaatgacagcatttaattcatgctactcagtaatctgtgattatgaaaacaatcaaatcaatgtaagaaattcaagggatattaaacattaaacattaagctatgttaaatcttactagttataagcaaaaaacgatgaaataactattaatgtgattatgaaacaaactgttacgactataaatattcattgtagactaaagtaacattggaacttaatgattactgagcaaccattcctgtatcatggctaaaggagatatagtcagactaaagaaaaaacttgaaatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAGCATAAATTCATATACATGTATGTAATTATTAAACTA--AACTTA---ATA-CACAAGTTCA-ATGTAATT-CA-----------ATG-AATTAAAT-TGAACTAATGTAATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
gi|12 : GTATATTACACAAGTTCA-ATTTAATT-CACTCAATATCAAGTATAGTTATATATAAAC-TGTG
gi|9 : TATTACATTAGTTCA-ATTTAATT-CATT-----------G-AATTACAT-TGAACTTGTGTATTAAGTTTAG------TT
gi|11 : agcataaattcatatacatgtatgtaattattaATATAAGTTCA-AATTAACT-CACTCATTATTAATTG-TATTATAT-TAAtggttacttccctgaggaagatttttgaatgaaaa
gi|12 : CACA-GTTTATATATAACTATACTTGATATTGAGTG-AATTAAAT-TGAACTTGTGTAATATggtatttttacttccctgaggaagatttttgaatgaag
gi|11 : gtTTA-ATATAATA-CAATTAATAATGAGTG-AGTTAATT-TGAACTTATATGGTATTTTTAC------TTCCCTGAGGAAGATTTTTGAATGAA
gi|13 : TTGTGTCATATGATTACATGTACTTCTCTGAGGAAGA-TTTTGAATGAAg
gi|15 : GTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAt
gi|16 : TGATAAAGCTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAt
gi|17 : ATATGGTTAT------TTCCCTGAGGAAGATATTTGAATGAAAAt
gi|18 : TATGGTTAC------TCCCCTGAGGAAGATTTTTAAATGAAAA
gi|14 : TTAC------TTCACTGAGGAAGATTTTTGAATAAAAA
gi|19 : tatacgatagatTTAT------TTCCCTGAAGTAGATTTTTGAATGAAAcata
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): TAAAAGTGGATAAGGCAAAATGATATCTGCCTGATTAAATGGCTCAACAGACACCAATTGCCACAATCGATCCTTGACGTGCTTGTCGGTGATGCTCTTGATGCTGAAAACGAGGATGACAATTTGGATGTTTACGAGCCTGGAGACTCCGATGATATGATGAGTAATTAATCATTGAATGATACTCCAAGAAAGACTATTCACCTTTTAGTTTGTTGGCTTTTACACTTAACAGTTTAGGTGATGTTACATAAAATCCATAAATACATGATATTATTAACTGGCGATGTTAATGCTACCACGTGATAATGACACTATCTAAATCAATGAATAATATTTAAGGTTTATTTAACCTTGTATTTATAGAAATAATGATCCGATGCAAGCTAT
Unaligned ( gi|10 ): CAACTCTTACCGAACGAAAGAATAAAACAACGAATACAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCGA
Alignments
lowQualScore : 1 77777777777777777 11 1111 111 4444 444444444 1 22222222 333333333 1111 2222222222222222 1 1 33 1 1111111111111 111111
lowQualScore : 8 1 5 8 1 4 1 1 44 3 1 2 11111111111111111 1 00 3 3 3 7 4444 111 3 2 1111 3 5 111111111 1 5 1 5 0 11111111 1 2 6 222222222 0 1 1 1111 0 3 7777777777777777 0 1 6 7 0 3 11 3 2 9 22 8 6 0 4444444444444 111111
lowQualScore : . . . . . . . . .. . . . ................. . .. . . . . .... ... . . .... . . ......... . . . . . ........ . . . ......... . . . .... . . ................ . . . . . . .. . . . .. . . . ............. ......
lowQualScore : 8 0 0 0 4 6 8 8 88 7 3 5 88888888888888888 0 77 7 2 5 3 2222 777 3 5 0000 5 7 000000000 4 0 6 7 3 22222222 0 5 7 666666666 8 4 0 8888 8 8 4444444444444444 0 0 7 0 7 3 77 3 5 8 22 0 2 8 8888888888888 555555
consensus : AAAGCCTGGTGANTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAAAAACAATATGTGACACTT--T-----T----TG--GAGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATG---AAAACANTCAAATT--AATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATTAAACTATGTTNAATCATACTAGC-TATAAGCCTAAAACGATNAAATAACTAC------T-AATGTTGGTGCAACAAAGTGATTATGACGC-AAAATGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATNTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
Reference ( family-10 ) : AAAGCCTGGTGANTNAGATGTTGAGTATGATAGAACA-TTAAGAAAACGATTTTAAAGTAATATGATTAGTGCGCTCTAAAAACAATATGTGACACTT--T----TT----TG--GAGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAAACTG----TGATTATG---AAAACAATCAAACTAAAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATTAAACTATGTTAAATCATACTAGC-TATAAGCCTAAAACGATAAAATAACTAC------T-AATGTTGGTGCAACAAAGTGATTATGACGC-AAAATGTTACGACTATTAATATTCATTGAAATG-ATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATACAGTAAGACNAAATG--AAAACTTGAANTA-C-AA---AAA-----CA-ACATTTANTGAACATGAATTCATA-ACATGAAAAATAACCAT-GAACTTG--TT-ATTACACAAGTTCA-ATTTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
gi|1 : CCTGGTGAATGAGATGTTGATTATGATAGAACA-TTAA--------------AGTAATATGATTAGTGCGCTCTAAAAACAACAT--------------------------AAGTTTTGCACTTAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATATGTCTATGCTGTAATTGGTGGTAAATGAAAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATG---AAAACAATCAAATT--AATTTAGGATATTCAAGGGATATTAAACCATA--A-ACT-A-CAAACTATGTTAAAGTATACTTGC-TATACGCATAAAACGATAAAATAACTAC------T-TATGTTGGTGAAACAAAGTGATTATGACGC-AAAATGTTTCGACTACTAATACTCATTGAAATGTATCATGCTTAACTAAAGTCACATTGTGACTTAATGATTACGGAGCAACTATTCCTGTATTATGGCTGAAGTAAATATAATAAGACCAAATG--AAGACTTGAAGTA-C-AATATAAA-----CA-ACATTTCCTGAACATGAATTTATA-ACATGAAAAGTAATCAT-GAACTTGT-TT-ATTACA-ATGT-----TTTA-------TTAA-----AGTGAATGAAGCTTAATTTGT
gi|11 : atTTA-ATATAATA-CAATTAATAATGAGTGAGTTAATTTGAACTTATATGGTATTTTTAC------TTCCCTGAGGAAGATTTTTGAATGAAaaatatacacatattccagtttcgttaagcagaagtagaaaataaatcctgaaacatgtcacacaacaaagaacaacaaataatacctaaattt
gi|12 : CACA-GTTTATATATAACTATACTTGATATTGAGTGAATTAAATTGAACTTGTGTAATATg
gi|13 : gtTTGTGTCATATGATTACATGTACTTCTCTGAGGAAGA-TTTTGAATGAA
gi|14 : GATAGATTTAC------TTCACTGAGGAAGATTTTTGAATAAAAAt
gi|15 : tatacGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAcata
gi|16 : TGATAAAGCTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAt
gi|17 : ATATGGTTAT------TTCCCTGAGGAAGATATTTGAATGAAAAt
gi|18 : TATGGTTAC------TCCCCTGAGGAAGATTTTTAAATGAAAA
gi|19 : TTAT------TTCCCTGAAGTAGATTTTTGAATGAAA
gi|2 : atgtatAAAACTTGGTGA-TCAGATGTTGAGTATGATATAATA-TTTAGAAAATGACTCTAAAGTTATATGATAAGTGCGCTCTTAAAACACTATTTGACATTT--T----ATA---TGAGGAGTTTTACATTAATCAGTAATAAAGATGTTACTTTGAAAATCAGGCTATAGGTACATGCTGTAATTGGTGGTAAATGACAATATTCATTTCATGCTACTCAGTATATTGGGGTTAGTTATG---AAAACATT--------ATTGTAGGACATTCAAGGGATATTCAA-CATG--AGA-T-ATTAAACTATGTTCAATCATAATAGC-AATAAGCCTTAAACGATTAAATGACTAC------T-AATGTTAATGCAACAAAGTACTTATGAAGC-AAAATGTAACGACTGTTAATATTCAATGAA---------GCTAAACTACAGTAACATTGTTATTTAATGATTACAAAGCAACAATCCCTGTATTGTGACTGAAAGAGATATAGTAAGACCAAATG--AAATCTTGAAGCA-C-AG---AAAAGAAACA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAACCAT-GAACTTG--TTTATAACACAAGTTCA-ATTTAATT-CACTCAATATTGAGTGAATTAAATTGAACTTGTGTAATATGGTTAC------TTCTCTGAGGAAGATTTTTGAATGAAAA
gi|20 : AGCAGTAATGATGATGTTACTTTGAGA-TCGGGT
gi|3 : AAAGCCTGGTGACTCAGATGTTGTGTATGATAGAATA-TTAAGAAAGTGATTTTAAAG-------ATTAGTGTGCTCTAAAAACAATATGTGACACTT--T----CTCTAGTG--GAATTTTGCACTAAGTGGTTATAATTATGTTAATTTGAA--------TATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACCCTGTAACCTG----TGATTATG---AAAACACTAAAATT--GATGTGGAAAACTCAAGGGATATCAAA-CATT--A-A-TCATTAAACTATGTTCAATCATGCAAGC-TATAAGGCTAAAAT-ATTAAATAACTAC------A-ACTGTTGGTGCAACAAAGTGGTTATGACGC-AAAATGTTATGACTATTAATATTCATTGAAATGCATCATTCTAAACTAAAGTAACATTGTGACTTAATGATTACGG-GCAACCATTCCTGTATTATGGTTGAAGGAAATACAGCAAGACAAAAT---AAAAC------------------A-----CA-ACATTTAATGAACATGAATTCATA-ACATGAAAA
gi|4 : agaaatgaagaagcaaacagaatatctgtatgttatcttatgaaggcaattgaaggccaatttccagggtcagccattgatgtggctttcaatgatactgttgaagctggaactgataatttgcaAAAGTCTGGTGAATCAGATGTCGAGTATGGTAGAATA-TTAAGAAAATGATTCTAAAGCAATTTGATAAAGGCGCTCTAAAA-CAATATGTGATACTT-----------------GATTTTT------AGGAGTAATGATGATGTTACTTTGAAA-TCAGGTTAAAGAT-CAAGCTGTAATTGGTGGTAAATGACAGCATTTAATTCATGCTACTCAGTAATCTG----TGATTATG---AAAACAATCAAATC--AATGTAAGAAATTCAAGGGATATTAAA-CATTA-A-A-C-ATTAAGCTATGTTAAATCTTACTAGT-TATAAGCAAAAAACGATGAAATAACTAT------T-AAT--------------GTGATTATGAAAC-AAACTGTTACGACTATAAATATTCATTG-------------TAGACTAAAGTAACATTGGAACTTAATGATTACTGAGCAACCATTCCTGTATCATGGCTAAAGGAGATATAGTCAGACTAAA-GAAAAAACTTGAAATATC-AA---AAA-----g
gi|4 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaTTTACTGAACATGAATTCATA-ACAAGAAATATAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgaacatgaattcataacaagaaatataa
gi|5 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaaaagtctggtgaatcagatgtcgagtatggtagaatattaagaaaatgattctaaagcaatttgataaaggcgctctaaaacaatatgtgatacttgatttttaggagtaatgatgatgttactttgaaatcaggttaaagatcaagctgtaattggtggtaaatgacagcatttaattcatgctactcagtaatctgtgattatgaaaacaatcaaatcaatgtaagaaattcaagggatattaaacattaaacattaagctatgttaaatcttactagttataagcaaaaaacgatgaaataactattaatgtgattatgaaacaaactgttacgactataaatattcattgtagactaaagtaacattggaacttaatgattactgagcaaccattcctgtatcatggctaaaggagatatagtcagactaaagaaaaaacttgaaatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATTCGTGCGCTCCAAAA-CAATACGTGACATTT--TATTTTT----TG--GAGTTTTGCACTAAGCAGTAATTATAATGTTAATTTGAA--------TATAGGCAGATTTTGTAATTGATGGTAAATGACAACATTCATTTCATGCTACTCAGTTACATG----TGATTATGAAAAAAACACTCAAACT--AATGTAGGAAATTCAAGGGATATTAAA-C-T----------TTAAACAATGT-------TACTAGCTTATAAGTCCAAAATGAT-AAATAACTAC------TAAATATTGGTGCAACAAAGTGATTATGACGCAAAAATGTTATGACTATTGATATTCATTGAAATGCATCATGCTGAACTTAAGTAACATTGTGACGTAATGATTACGGAGCAACTATTCCTGTTTTATGGCTAAAGGAAATACAGTAGGATAAAATG--AAAACTTGAATTA-CTTA---AAA-----CACATATTTAATGAACATGAATTCATA-ACATG
gi|6 : AACGCCTGGTGACTAAGATGTTGAGTATGATA-AACAATTTAGAAAACGGCTTTAAAGTAATATAA-----------------------GTGACACTTAAT----TT----GGTTGAATTTTGCACTAAGCAGTAATGATGACGGTACTTTGATA-TCAGGATACAGGTATATACTGTAGATGGTGGTAAATAAGCGCATTCATTTCATGCTACTTAAT-AACTG----CGATTATG---AAAACAATCAAATTAAA--GTATGAATGTTAAGGAATATTCAA-CA----A-------TAAACTATATTAAATCATACTAGC-TGTAAGCCTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacaacaaagaacaacacaatagacctaaattt
gi|8 : atggatgtgcttttcaatgatgctgttgaagatggaactgatgatgatcaattgcatatttaGCAGGAAATGC--TGGATATTAAA-CATTTTA-T-C-ATTAAA-TATGTTTAACCCTATCAGC-TATAAACCTAACACGATAAAACAACTACATGTATT-AATGTTAGTGCCGCAGGGTGAATATGAAGC-AAGTTTTTACGACTATTTAAGTTTAGTGAAtaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcacataaatacgatagaccttaatgttaa
gi|9 : ttattaaaagtgattacgaaAGCATAAATTCATATACATGTATG-TAATTATTAAACTAAACTT-AATACACAAGTTCA-ATGTAATT-CA-----------ATGAATTAAATTGAACTAATGTAATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): TAAAAGTGGATAAGGCAAAATGATATCTGCCTGATTAAATGGCTCAACAGACACCAATTGCCACAATCGATCCTTGACGTGCTTGTCGGTGATGCTCTTGATGCTGAAAACGAGGATGACAATTTGGATGTTTACGAGCCTGGAGACTCCGATGATATGATGAGTAATTAATCATTGAATGATACTCCAAGAAAGACTATTCACCTTTTAGTTTGTTGGCTTTTACACTTAACAGTTTAGGTGATGTTACATAAAATCCATAAATACATGATATTATTAACTGGCGATGTTAATGCTACCACGTGATAATGACACTATCTAAATCAATGAATAATATTTAAGGTTTATTTAACCTTGTATTTATAGAAATAATGATCCGATGCAAGCTAT
Unaligned ( gi|10 ): CAACTCTTACCGAACGAAAGAATAAAACAACGAATACAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCGA
Alignments
lowQualScore : 111111111 1111 77777777777777777777777777 11111111 1111 111 44444444444444444 22222222 111111111 1111 2222222222222222 1 1 33 1 111111111 111111
lowQualScore : 7 6 000000000 3 33 3 0000 5 8 1 7 1 11111111111111111111111111 1 1 1 00000000 1 1 0 6 2222 000 6 0 0 5 0 11111111111111111 44 777 5 7 11111111 1 2 6 111111111 0 1 1 1111 0 3 7777777777777777 0 6 7 3 11 3 2 9 8 1 0 8 666666666 111111
lowQualScore : . . ......... . .. . .... . . . . . .......................... . . . ........ . . . . .... ... . . . . . ................. .. ... . . ........ . . . ......... . . . .... . . ................ . . . . .. . . . . . . . ......... ......
lowQualScore : 5 7 222222222 2 55 2 9999 7 4 3 9 4 00000000000000000000000000 7 7 9 44444444 4 7 1 6 1111 000 6 5 2 0 1 99999999999999999 66 111 0 5 22222222 0 5 7 888888888 8 4 0 8888 8 2 4444444444444444 0 7 0 3 77 3 5 2 0 0 8 0 888888888 555555
consensus : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTT--T-----T----T-----G--G---AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATG---AAAACANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATT-----AAACTATGTTNAATC--ATACTAGC-TATAAGCCTAAAACGATNAAATAACTAC------T-AATGTTGGTGCAACAAAGTGATTATGACGC-AAAATGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
Reference ( family-10 ) : AAAGCCTGGTGANTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTT--T-----T----T-----G--G---AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATG---AAAACANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATT-----AAACTATGTTNAATC--ATACTAGC-TATAAGCCTAAAACGATNAAATAACTAC------T-AATGTTGGTGCAACAAAGTGATTATGACGC-AAAATGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATNTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
gi|1 : CCTGGTGAATGAGATGTTGATTATGATAGAACA-TTAA--------------AGTAATATGATTAGTGCGCTCTAA-AAACAACAT-------------------------------A---AGTTTTGCACTTAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATATGTCTATGCTGTAATTGGTGGTAAATGAAAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATG---AAAACAATCAAATTAATTTAGGATATTCAAGGGATATTAAACCATA--A-ACT-A-C-----AAACTATGTTAAAGT--ATACTTGC-TATACGCATAAAACGATAAAATAACTAC------T-TATGTTGGTGAAACAAAGTGATTATGACGC-AAAATGTTTCGACTACTAATACTCATTGAAATGTATCATGCTTAACTAAAGTCACATTGTGACTTAATGATTACGGAGCAACTATTCCTGTATTATGGCTGAAGTAAATATAATAAGACCAAATG--AAGACTTGAAGTA-C-AATATAAA-----CA-ACATTTCCTGAACATGAATTTATA-ACATGAAAAGTAATCAT-GAACTTGT-TT-ATTA--------CA-ATGT--TT-TA-TTAA-----AGTGAATGAAGCTTAATTTGT
gi|11 : atTTA-ATATAATA-CAATTAATAATGAGTGAGTTAATTTGAACTTATATGGTATTTTTAC------TTCCCTGAGGAAGATTTTTGAATGAAaaatatacacatattccagtttcgttaagcagaagtagaaaataaatcctgaaacatgtcacacaacaaagaacaacaaataatacctaaattt
gi|12 : CACA-GTTTATATATAACTATACTTGATATTGAGTGAATTAAATTGAACTTGTGTAATATg
gi|13 : gtTTGTGTCATATGATTACATGTACTTCTCTGAGGAAGA-TTTTGAATGAA
gi|14 : GATAGATTTAC------TTCACTGAGGAAGATTTTTGAATAAAAAt
gi|15 : tatacGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAcata
gi|16 : TGATAAAGCTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAt
gi|17 : ATATGGTTAT------TTCCCTGAGGAAGATATTTGAATGAAAAt
gi|18 : TATGGTTAC------TCCCCTGAGGAAGATTTTTAAATGAAAA
gi|19 : TTAT------TTCCCTGAAGTAGATTTTTGAATGAAA
gi|2 : atgtatAAAACTTGGTGA-TCAGATGTTGAGTATGATATAATA-TTTAGAAAATGACTCTAAAGTTATATGATAAGTGCGCTCTTA-AAACACTATTTGACATTT--T-----A----TATGA-G--G---AGTTTTACATTAATCAGTAATAAAGATGTTACTTTGAAAATCAGGCTATAGGTACATGCTGTAATTGGTGGTAAATGACAATATTCATTTCATGCTACTCAGTATATTGGGGTTAGTTATG---AAAACA------TTATTGTAGGACATTCAAGGGATATTCAA-CATG--AGA-T-ATT-----AAACTATGTTCAATC--ATAATAGC-AATAAGCCTTAAACGATTAAATGACTAC------T-AATGTTAATGCAACAAAGTACTTATGAAGC-AAAATGTAACGACTGTTAATATTCAATGAA---------GCTAAACTACAGTAACATTGTTATTTAATGATTACAAAGCAACAATCCCTGTATTGTGACTGAAAGAGATATAGTAAGACCAAATG--AAATCTTGAAGCA-C-AG---AAAAGAAACA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAACCAT-GAACTTG--TTTATAACACAAGTTCA-ATTTAATT-CACTCAATATTGAGTGAATTAAATTGAACTTGTGTAATATGGTTAC------TTCTCTGAGGAAGATTTTTGAATGAAAA
gi|20 : AGCAGTAATGATGATGTTACTTTGAGA-TCGGGT
gi|3 : AAAGCCTGGTGACTCAGATGTTGTGTATGATAGAATA-TTAAGAAAGTGATTTTAAAG-------ATTAGTGTGCTCTAA-AAACAATATGTGACACTT--T-----C----TCTAGTG--G---AATTTTGCACTAAGTGGTTATAATTATGTTAATTTGAA--------TATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACCCTGTAACCTG----TGATTATG---AAAACACTAAAATTGATGTGGAAAACTCAAGGGATATCAAA-CATT--A-A-TCATT-----AAACTATGTTCAATC--ATGCAAGC-TATAAGGCTAAAAT-ATTAAATAACTAC------A-ACTGTTGGTGCAACAAAGTGGTTATGACGC-AAAATGTTATGACTATTAATATTCATTGAAATGCATCATTCTAAACTAAAGTAACATTGTGACTTAATGATTACGG-GCAACCATTCCTGTATTATGGTTGAAGGAAATACAGCAAGACAAAAT---AAAAC------------------A-----CA-ACATTTAATGAACATGAATTCATA-ACATGAAAA
gi|4 : agaaatgaagaagcaaacagaatatctgtatgttatcttatgaaggcaattgaaggccaatttccagggtcagccattgatgtggctttcaatgatactgttgaagctggaactgataatttgcaAAAGTCTGGTGAATCAGATGTCGAGTATGGTAGAATA-TTAAGAAAATGATTCTAAAGCAATTTGATAAAGGCGCTCTAA-AA-CAATATGTGATACTT----------------------G---ATTTTT------AGGAGTAATGATGATGTTACTTTGAAA-TCAGGTTAAAGAT-CAAGCTGTAATTGGTGGTAAATGACAGCATTTAATTCATGCTACTCAGTAATCTG----TGATTATG---AAAACAATCAAATCAATGTAAGAAATTCAAGGGATATTAAA-CATTA-A-A-C-ATT-----AAGCTATGTTAAATC--TTACTAGT-TATAAGCAAAAAACGATGAAATAACTAT------T-AAT--------------GTGATTATGAAAC-AAACTGTTACGACTATAAATATTCATTG-------------TAGACTAAAGTAACATTGGAACTTAATGATTACTGAGCAACCATTCCTGTATCATGGCTAAAGGAGATATAGTCAGACTAAA-GAAAAAACTTGAAATATC-AA---AAA-----g
gi|4 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaTTTACTGAACATGAATTCATA-ACAAGAAATATAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgaacatgaattcataacaagaaatataa
gi|5 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaaaagtctggtgaatcagatgtcgagtatggtagaatattaagaaaatgattctaaagcaatttgataaaggcgctctaaaacaatatgtgatacttgatttttaggagtaatgatgatgttactttgaaatcaggttaaagatcaagctgtaattggtggtaaatgacagcatttaattcatgctactcagtaatctgtgattatgaaaacaatcaaatcaatgtaagaaattcaagggatattaaacattaaacattaagctatgttaaatcttactagttataagcaaaaaacgatgaaataactattaatgtgattatgaaacaaactgttacgactataaatattcattgtagactaaagtaacattggaacttaatgattactgagcaaccattcctgtatcatggctaaaggagatatagtcagactaaagaaaaaacttgaaatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATTCGTGCGCTCCAA-AA-CAATACGTGACATTT--TATTTTT----T-----G--G---AGTTTTGCACTAAGCAGTAATTATAATGTTAATTTGAA--------TATAGGCAGATTTTGTAATTGATGGTAAATGACAACATTCATTTCATGCTACTCAGTTACATG----TGATTATGAAAAAAACACTCAAACTAATGTAGGAAATTCAAGGGATATTAAA-C-T----------TT-----AAACAATGT---------TACTAGCTTATAAGTCCAAAATGAT-AAATAACTAC------TAAATATTGGTGCAACAAAGTGATTATGACGCAAAAATGTTATGACTATTGATATTCATTGAAATGCATCATGCTGAACTTAAGTAACATTGTGACGTAATGATTACGGAGCAACTATTCCTGTTTTATGGCTAAAGGAAATACAGTAGGATAAAATG--AAAACTTGAATTA-CTTA---AAA-----CACATATTTAATGAACATGAATTCATA-ACATG
gi|6 : AACGCCTGGTGACTAAGATGTTGAGTATGATAAACAA-TTTAGAAAACGGCTTTAAAGTAATATAA------------------------GTGACACTTAAT-----T----T-----G--GTTGAATTTTGCACTAAGCAGTAATGATGACGGTACTTTGATA-TCAGGATACAGGTATATACTGTAGATGGTGGTAAATAAGCGCATTCATTTCATGCTACTTAATAA-CTG----CGATTATG---AAAACAATCAAATTAAAGTATGAATGTTAAGGAATATTCAA-CA----A-------T-----AAACTATATTAAATC--ATACTAGC-TGTAAGCCTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacaacaaagaacaacacaatagacctaaattt
gi|7 : atggatgtgcttttcaatgatgctgttgaagatggaactgatgatgatcaattgcatatttaAGCCTGGAGACTCCGATG----ATATGAT-GAGTAATTAA---------TC---ATTGA-ATGAT------ACTCCAAGAAAGACTAT-TCAC-CTT--T-----TAGTTT-----GTTG---GCTTTTACACTTAACAGTTTAGGTGATGTTAC-ATAAAA-TC----CATAAATACATGATATTAT------TAACTGGCGATGTT-A----ATGCTAC-CA------CG----TGATAATG---ACACTATCTAAATCAATGAATAATATTTAAGGTTTATTTAA-CCTT----G-T-ATTTATAGAAATAATG----ATCCGATGCAAGC-TATtaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcacataaatacgatagaccttaatgttaa
gi|8 : taaaagtggataaggcaaaatgatatctgcctgattaaatggctcaacagacaccaattgccacaatcgatccttgacgtgcttgtcggtgatgctcttgatgctgaaaacgaggatgacaatttggatgtttacgGCAGGAAATGC--TGGATATTAAA-CATTTTA-T-C-ATT-----AAA-TATGTTTAACC--CTATCAGC-TATAAACCTAACACGATAAAACAACTACATGTATT-AATGTTAGTGCCGCAGGGTGAATATGAAGC-AAGTTTTTACGACTATTTAAGTTTAGTGAA
gi|9 : ttattaaaagtgattacgaaAGCATAAATTCATATACATGTATG-TAATTATTAAACTAAACTT-AATACACAAGTTCA-ATGTAATT-CA-----------ATGAATTAAATTGAACTAATGTAATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAACTCTTACCGAACGAAAGAATAAAACAACGAATACAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCGA
Alignments
lowQualScore : 111111111 1111 77777777777777777777777777 11111111 1111 111 3333333333333333333 111111 111111111 1111 2222222222222222 1 1 33 1 111111111 111111
lowQualScore : 6 6 000000000 3 33 3 0000 5 8 1 7 1 11111111111111111111111111 1 1 1 00000000 1 1 0 6 2222 000 6 0 0 5 9999999999999999999 7 777 5 7 999999 6 1 2 6 111111111 0 1 1 1111 0 3 7777777777777777 0 6 7 3 11 3 2 9 8 1 0 8 666666666 111111
lowQualScore : . . ......... . .. . .... . . . . . .......................... . . . ........ . . . . .... ... . . . . ................... . ... . . ...... . . . . ......... . . . .... . . ................ . . . . .. . . . . . . . ......... ......
lowQualScore : 7 7 222222222 2 55 2 9999 7 4 3 9 4 00000000000000000000000000 7 7 9 44444444 4 7 1 6 1111 000 6 5 2 0 1111111111111111111 6 111 0 5 222222 7 0 5 7 888888888 8 4 0 8888 8 2 4444444444444444 0 7 0 3 77 3 5 2 0 4 8 0 888888888 555555
consensus : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTT--T-----T----T-----G--G---AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATT-----AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
Reference ( family-10 ) : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTT--T-----T----T-----G--G---AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATT-----AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
gi|1 : CCTGGTGAATGAGATGTTGATTATGATAGAACA-TTAA--------------AGTAATATGATTAGTGCGCTCTAA-AAACAACAT-------------------------------A---AGTTTTGCACTTAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATATGTCTATGCTGTAATTGGTGGTAAATGAAAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CAATCAAATTAATTTAGGATATTCAAGGGATATTAAACCATA--A-ACT-A-C-----AAACTATGTTAAAGT--ATACTTGCT-ATACGCATAAAACGATAAAATAACTAC------TTA-TGTTGGTGAAACAAAGTGATTATGACGCAAAA-TGTTTCGACTACTAATACTCATTGAAATGTATCATGCTTAACTAAAGTCACATTGTGACTTAATGATTACGGAGCAACTATTCCTGTATTATGGCTGAAGTAAATATAATAAGACCAAATG--AAGACTTGAAGTA-C-AATATAAA-----CA-ACATTTCCTGAACATGAATTTATA-ACATGAAAAGTAATCAT-GAACTTGT-TT-ATTA--------CA-ATGT--TT-TA-TTAA-----AGTGAATGAAGCTTAATTTGT
gi|11 : atTTA-ATATAATA-CAATTAATAATGAGTGAGTTAATTTGAACTTATATGGTATTTTTAC------TTCCCTGAGGAAGATTTTTGAATGAAaaatatacacatattccagtttcgttaagcagaagtagaaaataaatcctgaaacatgtcacacaacaaagaacaacaaataatacctaaattt
gi|12 : CACA-GTTTATATATAACTATACTTGATATTGAGTGAATTAAATTGAACTTGTGTAATATg
gi|13 : gtTTGTGTCATATGATTACATGTACTTCTCTGAGGAAGA-TTTTGAATGAA
gi|14 : GATAGATTTAC------TTCACTGAGGAAGATTTTTGAATAAAAAt
gi|15 : tatacGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAcata
gi|16 : TGATAAAGCTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAt
gi|17 : ATATGGTTAT------TTCCCTGAGGAAGATATTTGAATGAAAAt
gi|18 : TATGGTTAC------TCCCCTGAGGAAGATTTTTAAATGAAAA
gi|19 : TTAT------TTCCCTGAAGTAGATTTTTGAATGAAA
gi|2 : atgtatAAAACTTGGTGA-TCAGATGTTGAGTATGATATAATA-TTTAGAAAATGACTCTAAAGTTATATGATAAGTGCGCTCTTA-AAACACTATTTGACATTT--T-----A----TATGA-G--G---AGTTTTACATTAATCAGTAATAAAGATGTTACTTTGAAAATCAGGCTATAGGTACATGCTGTAATTGGTGGTAAATGACAATATTCATTTCATGCTACTCAGTATATTGGGGTTAGTTATGAAAA---CA------TTATTGTAGGACATTCAAGGGATATTCAA-CATG--AGA-T-ATT-----AAACTATGTTCAATC--ATAATAGCA-ATAAGCCTTAAACGATTAAATGACTAC------TAA-TGTTAATGCAACAAAGTACTTATGAAGCAAAA-TGTAACGACTGTTAATATTCAATGAA---------GCTAAACTACAGTAACATTGTTATTTAATGATTACAAAGCAACAATCCCTGTATTGTGACTGAAAGAGATATAGTAAGACCAAATG--AAATCTTGAAGCA-C-AG---AAAAGAAACA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAACCAT-GAACTTG--TTTATAACACAAGTTCA-ATTTAATT-CACTCAATATTGAGTGAATTAAATTGAACTTGTGTAATATGGTTAC------TTCTCTGAGGAAGATTTTTGAATGAAAA
gi|20 : AGCAGTAATGATGATGTTACTTTGAGA-TCGGGT
gi|3 : AAAGCCTGGTGACTCAGATGTTGTGTATGATAGAATA-TTAAGAAAGTGATTTTAAAG-------ATTAGTGTGCTCTAA-AAACAATATGTGACACTT--T-----C----TCTAGTG--G---AATTTTGCACTAAGTGGTTATAATTATGTTAATTTGAA--------TATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACCCTGTAACCTG----TGATTATGAAAA---CACTAAAATTGATGTGGAAAACTCAAGGGATATCAAA-CATT--A-A-TCATT-----AAACTATGTTCAATC--ATGCAAGCT-ATAAGGCTAAAAT-ATTAAATAACTAC------AAC-TGTTGGTGCAACAAAGTGGTTATGACGCAAAA-TGTTATGACTATTAATATTCATTGAAATGCATCATTCTAAACTAAAGTAACATTGTGACTTAATGATTACGG-GCAACCATTCCTGTATTATGGTTGAAGGAAATACAGCAAGACAAAAT---AAAAC------------------A-----CA-ACATTTAATGAACATGAATTCATA-ACATGAAAA
gi|4 : agaaatgaagaagcaaacagaatatctgtatgttatcttatgaaggcaattgaaggccaatttccagggtcagccattgatgtggctttcaatgatactgttgaagctggaactgataatttgcaAAAGTCTGGTGAATCAGATGTCGAGTATGGTAGAATA-TTAAGAAAATGATTCTAAAGCAATTTGATAAAGGCGCTCTAA-AA-CAATATGTGATACTT----------------------G---ATTTTT------AGGAGTAATGATGATGTTACTTTGAAA-TCAGGTTAAAGAT-CAAGCTGTAATTGGTGGTAAATGACAGCATTTAATTCATGCTACTCAGTAATCTG----TGATTATGAAAA---CAATCAAATCAATGTAAGAAATTCAAGGGATATTAAA-CATTA-A-A-C-ATT-----AAGCTATGTTAAATC--TTACTAGTT-ATAAGCAAAAAACGATGAAATAACTAT------TAA-T--------------GTGATTATGAAACAAAC-TGTTACGACTATAAATATTCATTG-------------TAGACTAAAGTAACATTGGAACTTAATGATTACTGAGCAACCATTCCTGTATCATGGCTAAAGGAGATATAGTCAGACTAAA-GAAAAAACTTGAAATATC-AA---AAA-----g
gi|4 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaTTTACTGAACATGAATTCATA-ACAAGAAATATAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgaacatgaattcataacaagaaatataa
gi|5 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaaaagtctggtgaatcagatgtcgagtatggtagaatattaagaaaatgattctaaagcaatttgataaaggcgctctaaaacaatatgtgatacttgatttttaggagtaatgatgatgttactttgaaatcaggttaaagatcaagctgtaattggtggtaaatgacagcatttaattcatgctactcagtaatctgtgattatgaaaacaatcaaatcaatgtaagaaattcaagggatattaaacattaaacattaagctatgttaaatcttactagttataagcaaaaaacgatgaaataactattaatgtgattatgaaacaaactgttacgactataaatattcattgtagactaaagtaacattggaacttaatgattactgagcaaccattcctgtatcatggctaaaggagatatagtcagactaaagaaaaaacttgaaatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATTCGTGCGCTCCAA-AA-CAATACGTGACATTT--TATTTTT----T-----G--G---AGTTTTGCACTAAGCAGTAATTATAATGTTAATTTGAA--------TATAGGCAGATTTTGTAATTGATGGTAAATGACAACATTCATTTCATGCTACTCAGTTACATG----TGATTATGAAAAAAACACTCAAACTAATGTAGGAAATTCAAGGGATATTAAA-C---------T--TT-----AAACAATGTT---------ACTAGCTTATAAGTCCAAAATGAT-AAATAACTAC------TAAATATTGGTGCAACAAAGTGATTATGACGCAAAAATGTTATGACTATTGATATTCATTGAAATGCATCATGCTGAACTTAAGTAACATTGTGACGTAATGATTACGGAGCAACTATTCCTGTTTTATGGCTAAAGGAAATACAGTAGGATAAAATG--AAAACTTGAATTA-CTTA---AAA-----CACATATTTAATGAACATGAATTCATA-ACATG
gi|6 : AACGCCTGGTGACTAAGATGTTGAGTATGATAAACAA-TTTAGAAAACGGCTTTAAAGTAATATAA------------------------GTGACACTTAAT-----T----T-----G--GTTGAATTTTGCACTAAGCAGTAATGATGACGGTACTTTGATA-TCAGGATACAGGTATATACTGTAGATGGTGGTAAATAAGCGCATTCATTTCATGCTACTTAATAA-CTG----CGATTATGAAAA---CAATCAAATTAAAGTATGAATGTTAAGGAATATTCAA-CA----A-------T-----AAACTATATTAAATC--ATACTAGCT-GTAAGCCTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacaacaaagaacaacacaatagacctaaattt
gi|7 : atggatgtgcttttcaatgatgctgttgaagatggaactgatgatgatcaattgcatatttaAGCCTGGAGACTCCGATG----ATATGAT-GAGTAATTAA---------TC---ATTGA-ATGAT------ACTCCAAGAAAGACTAT-TCAC-CTT--T-----TAGTTT-----GTTG---GCTTTTACACTTAACAGTTTAGGTGATGTTAC-ATAAAA-TC----CATAAATACATGATATTAT------TAACTGGCGATGTT-A----ATGCTAC-CA------CG----TGATAATGACAC---TATCTAAATCAATGAATAATATTTAAGGTTTATTTAA-CCTT----G-T-ATTTATAGAAATAATG----ATCCGATGCAAGCT-ATtaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcacataaatacgatagaccttaatgttaa
gi|8 : taaaagtggataaggcaaaatgatatctgcctgattaaatggctcaacagacaccaattgccacaatcgatccttgacgtgcttgtcggtgatgctcttgatgctgaaaacgaggatgacaatttggatgtttacgGCAGGAAATGC--TGGATATTAAA-CATTTTA-T-C-ATT-----AAA-TATGTTTAACC--CTATCAGCT-ATAAACCTAACACGATAAAACAACTACATGTATTAA-TGTTAGTGCCGCAGGGTGAATATGAAGCAAGT-TTTTACGACTATTTAAGTTTAGTGAA
gi|9 : ttattaaaagtgattacgaaAGCATAAATTCATATACATGTATG-TAATTATTAAACTAAACTT-AATACACAAGTTCA-ATGTAATT-CA-----------ATGAATTAAATTGAACTAATGTAATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAACTCTTACCGAACGAAAGAATAAAACAACGAATACAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCGA
Alignments
lowQualScore : 111111111 1111 77777777777777777777777777 11111111 1111 111 3333333333333333333 111111 111111111 1111 2222222222222222 1 1 33 1 111111111 111111
lowQualScore : 6 6 000000000 3 33 3 0000 5 8 1 7 1 11111111111111111111111111 1 1 1 00000000 1 1 0 6 2222 000 6 0 0 5 9999999999999999999 7 777 5 7 999999 6 1 2 6 111111111 0 1 1 1111 0 3 7777777777777777 0 6 7 3 11 3 2 9 8 1 0 8 666666666 111111
lowQualScore : . . ......... . .. . .... . . . . . .......................... . . . ........ . . . . .... ... . . . . ................... . ... . . ...... . . . . ......... . . . .... . . ................ . . . . .. . . . . . . . ......... ......
lowQualScore : 7 7 222222222 2 55 2 9999 7 4 3 9 4 00000000000000000000000000 7 7 9 44444444 4 7 1 6 1111 000 6 5 2 0 1111111111111111111 6 111 0 5 222222 7 0 5 7 888888888 8 4 0 8888 8 2 4444444444444444 0 7 0 3 77 3 5 2 0 4 8 0 888888888 555555
consensus : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTT--T-----T----T-----G--G---AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATT-----AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
Reference ( family-10 ) : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTT--T-----T----T-----G--G---AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATT-----AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
gi|1 : CCTGGTGAATGAGATGTTGATTATGATAGAACA-TTAA--------------AGTAATATGATTAGTGCGCTCTAA-AAACAACAT-------------------------------A---AGTTTTGCACTTAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATATGTCTATGCTGTAATTGGTGGTAAATGAAAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CAATCAAATTAATTTAGGATATTCAAGGGATATTAAACCATA--A-ACT-A-C-----AAACTATGTTAAAGT--ATACTTGCT-ATACGCATAAAACGATAAAATAACTAC------TTA-TGTTGGTGAAACAAAGTGATTATGACGCAAAA-TGTTTCGACTACTAATACTCATTGAAATGTATCATGCTTAACTAAAGTCACATTGTGACTTAATGATTACGGAGCAACTATTCCTGTATTATGGCTGAAGTAAATATAATAAGACCAAATG--AAGACTTGAAGTA-C-AATATAAA-----CA-ACATTTCCTGAACATGAATTTATA-ACATGAAAAGTAATCAT-GAACTTGT-TT-ATTA--------CA-ATGT--TT-TA-TTAA-----AGTGAATGAAGCTTAATTTGT
gi|11 : atTTA-ATATAATA-CAATTAATAATGAGTGAGTTAATTTGAACTTATATGGTATTTTTAC------TTCCCTGAGGAAGATTTTTGAATGAAaaatatacacatattccagtttcgttaagcagaagtagaaaataaatcctgaaacatgtcacacaacaaagaacaacaaataatacctaaattt
gi|12 : CACA-GTTTATATATAACTATACTTGATATTGAGTGAATTAAATTGAACTTGTGTAATATg
gi|13 : gtTTGTGTCATATGATTACATGTACTTCTCTGAGGAAGA-TTTTGAATGAA
gi|14 : GATAGATTTAC------TTCACTGAGGAAGATTTTTGAATAAAAAt
gi|15 : tatacGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAcata
gi|16 : TGATAAAGCTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAt
gi|17 : ATATGGTTAT------TTCCCTGAGGAAGATATTTGAATGAAAAt
gi|18 : TATGGTTAC------TCCCCTGAGGAAGATTTTTAAATGAAAA
gi|19 : TTAT------TTCCCTGAAGTAGATTTTTGAATGAAA
gi|2 : atgtatAAAACTTGGTGA-TCAGATGTTGAGTATGATATAATA-TTTAGAAAATGACTCTAAAGTTATATGATAAGTGCGCTCTTA-AAACACTATTTGACATTT--T-----A----TATGA-G--G---AGTTTTACATTAATCAGTAATAAAGATGTTACTTTGAAAATCAGGCTATAGGTACATGCTGTAATTGGTGGTAAATGACAATATTCATTTCATGCTACTCAGTATATTGGGGTTAGTTATGAAAA---CA------TTATTGTAGGACATTCAAGGGATATTCAA-CATG--AGA-T-ATT-----AAACTATGTTCAATC--ATAATAGCA-ATAAGCCTTAAACGATTAAATGACTAC------TAA-TGTTAATGCAACAAAGTACTTATGAAGCAAAA-TGTAACGACTGTTAATATTCAATGAA---------GCTAAACTACAGTAACATTGTTATTTAATGATTACAAAGCAACAATCCCTGTATTGTGACTGAAAGAGATATAGTAAGACCAAATG--AAATCTTGAAGCA-C-AG---AAAAGAAACA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAACCAT-GAACTTG--TTTATAACACAAGTTCA-ATTTAATT-CACTCAATATTGAGTGAATTAAATTGAACTTGTGTAATATGGTTAC------TTCTCTGAGGAAGATTTTTGAATGAAAA
gi|20 : AGCAGTAATGATGATGTTACTTTGAGA-TCGGGT
gi|3 : AAAGCCTGGTGACTCAGATGTTGTGTATGATAGAATA-TTAAGAAAGTGATTTTAAAG-------ATTAGTGTGCTCTAA-AAACAATATGTGACACTT--T-----C----TCTAGTG--G---AATTTTGCACTAAGTGGTTATAATTATGTTAATTTGAA--------TATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACCCTGTAACCTG----TGATTATGAAAA---CACTAAAATTGATGTGGAAAACTCAAGGGATATCAAA-CATT--A-A-TCATT-----AAACTATGTTCAATC--ATGCAAGCT-ATAAGGCTAAAAT-ATTAAATAACTAC------AAC-TGTTGGTGCAACAAAGTGGTTATGACGCAAAA-TGTTATGACTATTAATATTCATTGAAATGCATCATTCTAAACTAAAGTAACATTGTGACTTAATGATTACGG-GCAACCATTCCTGTATTATGGTTGAAGGAAATACAGCAAGACAAAAT---AAAAC------------------A-----CA-ACATTTAATGAACATGAATTCATA-ACATGAAAA
gi|4 : agaaatgaagaagcaaacagaatatctgtatgttatcttatgaaggcaattgaaggccaatttccagggtcagccattgatgtggctttcaatgatactgttgaagctggaactgataatttgcaAAAGTCTGGTGAATCAGATGTCGAGTATGGTAGAATA-TTAAGAAAATGATTCTAAAGCAATTTGATAAAGGCGCTCTAA-AA-CAATATGTGATACTT----------------------G---ATTTTT------AGGAGTAATGATGATGTTACTTTGAAA-TCAGGTTAAAGAT-CAAGCTGTAATTGGTGGTAAATGACAGCATTTAATTCATGCTACTCAGTAATCTG----TGATTATGAAAA---CAATCAAATCAATGTAAGAAATTCAAGGGATATTAAA-CATTA-A-A-C-ATT-----AAGCTATGTTAAATC--TTACTAGTT-ATAAGCAAAAAACGATGAAATAACTAT------TAA-T--------------GTGATTATGAAACAAAC-TGTTACGACTATAAATATTCATTG-------------TAGACTAAAGTAACATTGGAACTTAATGATTACTGAGCAACCATTCCTGTATCATGGCTAAAGGAGATATAGTCAGACTAAA-GAAAAAACTTGAAATATC-AA---AAA-----g
gi|4 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaTTTACTGAACATGAATTCATA-ACAAGAAATATAAtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgaacatgaattcataacaagaaatataa
gi|5 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaaaagtctggtgaatcagatgtcgagtatggtagaatattaagaaaatgattctaaagcaatttgataaaggcgctctaaaacaatatgtgatacttgatttttaggagtaatgatgatgttactttgaaatcaggttaaagatcaagctgtaattggtggtaaatgacagcatttaattcatgctactcagtaatctgtgattatgaaaacaatcaaatcaatgtaagaaattcaagggatattaaacattaaacattaagctatgttaaatcttactagttataagcaaaaaacgatgaaataactattaatgtgattatgaaacaaactgttacgactataaatattcattgtagactaaagtaacattggaacttaatgattactgagcaaccattcctgtatcatggctaaaggagatatagtcagactaaagaaaaaacttgaaatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATTCGTGCGCTCCAA-AA-CAATACGTGACATTT--TATTTTT----T-----G--G---AGTTTTGCACTAAGCAGTAATTATAATGTTAATTTGAA--------TATAGGCAGATTTTGTAATTGATGGTAAATGACAACATTCATTTCATGCTACTCAGTTACATG----TGATTATGAAAAAAACACTCAAACTAATGTAGGAAATTCAAGGGATATTAAA-C---------T--TT-----AAACAATGTT---------ACTAGCTTATAAGTCCAAAATGAT-AAATAACTAC------TAAATATTGGTGCAACAAAGTGATTATGACGCAAAAATGTTATGACTATTGATATTCATTGAAATGCATCATGCTGAACTTAAGTAACATTGTGACGTAATGATTACGGAGCAACTATTCCTGTTTTATGGCTAAAGGAAATACAGTAGGATAAAATG--AAAACTTGAATTA-CTTA---AAA-----CACATATTTAATGAACATGAATTCATA-ACATG
gi|6 : AACGCCTGGTGACTAAGATGTTGAGTATGATAAACAA-TTTAGAAAACGGCTTTAAAGTAATATAA------------------------GTGACACTTAAT-----T----T-----G--GTTGAATTTTGCACTAAGCAGTAATGATGACGGTACTTTGATA-TCAGGATACAGGTATATACTGTAGATGGTGGTAAATAAGCGCATTCATTTCATGCTACTTAATAA-CTG----CGATTATGAAAA---CAATCAAATTAAAGTATGAATGTTAAGGAATATTCAA-CA----A-------T-----AAACTATATTAAATC--ATACTAGCT-GTAAGCCTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacaacaaagaacaacacaatagacctaaattt
gi|7 : atggatgtgcttttcaatgatgctgttgaagatggaactgatgatgatcaattgcatatttaAGCCTGGAGACTCCGATG----ATATGAT-GAGTAATTAA---------TC---ATTGA-ATGAT------ACTCCAAGAAAGACTAT-TCAC-CTT--T-----TAGTTT-----GTTG---GCTTTTACACTTAACAGTTTAGGTGATGTTAC-ATAAAA-TC----CATAAATACATGATATTAT------TAACTGGCGATGTT-A----ATGCTAC-CA------CG----TGATAATGACAC---TATCTAAATCAATGAATAATATTTAAGGTTTATTTAA-CCTT----G-T-ATTTATAGAAATAATG----ATCCGATGCAAGCT-ATtaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcacataaatacgatagaccttaatgttaa
gi|8 : taaaagtggataaggcaaaatgatatctgcctgattaaatggctcaacagacaccaattgccacaatcgatccttgacgtgcttgtcggtgatgctcttgatgctgaaaacgaggatgacaatttggatgtttacgGCAGGAAATGC--TGGATATTAAA-CATTTTA-T-C-ATT-----AAA-TATGTTTAACC--CTATCAGCT-ATAAACCTAACACGATAAAACAACTACATGTATTAA-TGTTAGTGCCGCAGGGTGAATATGAAGCAAGT-TTTTACGACTATTTAAGTTTAGTGAA
gi|9 : ttattaaaagtgattacgaaAGCATAAATTCATATACATGTATG-TAATTATTAAACTAAACTT-AATACACAAGTTCA-ATGTAATT-CA-----------ATGAATTAAATTGAACTAATGTAATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
blockSeqs : C A GAAAATGAC T TT T AAGT G A C T A TTAGTTTGTTG G A A AATCAGGC A T A GGGT AAA C . CTTGTATTTATAG C CGA T T ATGTAT A G A A ATGCATCAT A C GAA G CAGAAAAGAAA C T A T AC T C A T A A ATTAATAAT ATGTAC
blockSeqs : A . GAAAGTGAT T CA T TAGT . A A G A TCTCTAGTGG A G A ATCGGGT A T C . . A . ATTTTATCATT C A . T . . G C . ATGCATCAT C A TG A TCAAAAA . . A . . . C A . A . CTTGATATT .
blockSeqs : C . GAAAATGAT T TA T AAAG . A A G A TATTTTTTGG T G A ATCAGGT A A T . . C . ATGAGATATT A A . G . . A A . . C T TG T CTTAAAA . . . C . . T . CTCAATATT .
blockSeqs : C . GAAAACGGC T TG . TCGT . . A G A AATTTGGTTG G G A ATCAGGA A T C . . A . ATTAATCATT A T . A . . G C . . T A T . A . . G . . .
blockSeqs : . . . . . . . . . C G A TATATGAGG A A T ATC A T . . . T . ATTAAACATT T A . . . . . A . . .
blockSeqs : . . . . . . G C . . . . . . . . . . TTT . C . .
blockSeqs : . . AAT . . . .
blockSeqs : .
blockSeqs : .
blockSeqCons : GAAAATGAC TATTTGGTNG**************** ATTACATT*********** ********* CGAAAA********** CTTAATATT
originalCons : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTT--T-----T----T-----G--G---AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATT--A-A-T-ATT-----AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAAATGCATCATGCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTA-C-AA---AAA-----CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
finalCons : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTTTATTTGGTNG----------------AGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAA-CATTACATT-----------AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAA---------GCTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTACGAAAA----------CA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TT-ATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAACTCTTACCGAACGAAAGAATAAAACAACGAATACAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCGA
Alignments
lowQualScore : 111111111 1111 222222222 11111111 1111 111 44444444444444444 111111 8888888888888888888 1111 5555555 1 1 44 111111111 111111
lowQualScore : 6 6 000000000 3 33 3 0000 5 8 1 3 0 888888888 1 1 1 00000000 1 1 0 6 2222 000 6 0 0 44444444444444444 7 777 5 7 999999 6 1 2 6 3333333333333333333 0 1 1 1111 0 3 1111111 0 6 7 3 55 2 9 8 1 0 8 666666666 111111
lowQualScore : . . ......... . .. . .... . . . . . ......... . . . ........ . . . . .... ... . . . ................. . ... . . ...... . . . . ................... . . . .... . . ....... . . . . .. . . . . . . ......... ......
lowQualScore : 7 7 222222222 2 55 2 9999 7 4 3 0 4 777777777 7 7 9 44444444 4 7 1 6 1111 000 6 5 2 88888888888888888 6 111 0 5 222222 7 0 5 7 5555555555555555555 8 4 0 8888 8 2 0000000 0 7 0 3 00 5 2 0 4 8 0 888888888 555555
consensus : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTTTATTTNGTGGAGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAACATT--A--CATT-----AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAA---------G---------CTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTAC-NA-A--AAACA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTGT-TTATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
Reference ( family-10 ) : AAAGCCTGGTGACTCAGATGTTGAGTATGATAGAATA-TTAAGAAAATGACTCTAAAGTAATATGATTAGTGCGCTCTAA-AAACAATATGTGACACTTTATTTGGTNGAGTTTTGCACTAAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CANTCAAATTAATGTAGGAAATTCAAGGGATATTAAACATT--A--CATT-----AAACTATGTTNAATC--ATACTAGCT-ATAAGCCTAAAACGATNAAATAACTAC------TAA-TGTTGGTGCAACAAAGTGATTATGACGCAAAA-TGTTACGACTATTAATATTCATTGAA---------G---------CTAAACTAAAGTAACATTGTGACTTAATGATTACGGAGCAACCATTCCTGTATTATGGCTGAAGGAAATATAGTAAGACNAAATG--AAAACTTGAAGTAC-GA----AAACA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAATCAT-GAACTTG--TTATTACACAAGTTCA-ATGTAATT-CACTTAATATTGAGTGAATTAAATTGAACTTGTGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
gi|1 : CCTGGTGAATGAGATGTTGATTATGATAGAACA-TTAA--------------AGTAATATGATTAGTGCGCTCTAA-AAACAACATA------------------AGTTTTGCACTTAGCAGTAATGATGATGTTACTTTGAAA-TCAGGTTATATGTCTATGCTGTAATTGGTGGTAAATGAAAACATTCATTTCATGCTACTCAGTAACCTG----TGATTATGAAAA---CAATCAAATTAATTTAGGATATTCAAGGGATATTAAACCAT--A--AACTAC---AAACTATGTTAAAGT--ATACTTGCT-ATACGCATAAAACGATAAAATAACTAC------TTA-TGTTGGTGAAACAAAGTGATTATGACGCAAAA-TGTTTCGACTACTAATACTCATTGAAATGTATCATG---------CTTAACTAAAGTCACATTGTGACTTAATGATTACGGAGCAACTATTCCTGTATTATGGCTGAAGTAAATATAATAAGACCAAATG--AAGACTTGAAGTAC-AATAT-AAACA-ACATTTCCTGAACATGAATTTATA-ACATGAAAAGTAATCAT-GAACTTGT-TTATTA--------CA-ATGT--TT-TA-TTAA-----AGTGAATGAAGCTTAATTTGT
gi|11 : atTTA-ATATAATA-CAATTAATAATGAGTGAGTTAATTTGAACTTATATGGTATTTTTAC------TTCCCTGAGGAAGATTTTTGAATGAAaaatatacacatattccagtttcgttaagcagaagtagaaaataaatcctgaaacatgtcacacaacaaagaacaacaaataatacctaaattt
gi|12 : CACA-GTTTATATATAACTATACTTGATATTGAGTGAATTAAATTGAACTTGTGTAATATg
gi|13 : gtTTGTGTCATATGATTACATGTACTTCTCTGAGGAAGA-TTTTGAATGAA
gi|14 : GATAGATTTAC------TTCACTGAGGAAGATTTTTGAATAAAAAt
gi|15 : tatacGTGATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAcata
gi|16 : TGATAAAGCTAC------TTCCCTGAGGAAGATTTTTGAATGAAAAt
gi|17 : ATATGGTTAT------TTCCCTGAGGAAGATATTTGAATGAAAAt
gi|18 : TATGGTTAC------TCCCCTGAGGAAGATTTTTAAATGAAAA
gi|19 : TTAT------TTCCCTGAAGTAGATTTTTGAATGAAA
gi|2 : atgtatAAAACTTGGTGA-TCAGATGTTGAGTATGATATAATA-TTTAGAAAATGACTCTAAAGTTATATGATAAGTGCGCTCTTA-AAACACTATTTGACATTTTATATGA-GGAGTTTTACATTAATCAGTAATAAAGATGTTACTTTGAAAATCAGGCTATAGGTACATGCTGTAATTGGTGGTAAATGACAATATTCATTTCATGCTACTCAGTATATTGGGGTTAGTTATGAAAA---CA------TTATTGTAGGACATTCAAGGGATATTCAACATG--AGATATT-----AAACTATGTTCAATC--ATAATAGCA-ATAAGCCTTAAACGATTAAATGACTAC------TAA-TGTTAATGCAACAAAGTACTTATGAAGCAAAA-TGTAACGACTGTTAATATTCAATGAA---------G---------CTAAACTACAGTAACATTGTTATTTAATGATTACAAAGCAACAATCCCTGTATTGTGACTGAAAGAGATATAGTAAGACCAAATG--AAATCTTGAAGCACAGAAAAGAAACA-ACATTTACTGAACATGAATTCATA-ACATGAAAAATAACCAT-GAACTTGT-TTATAACACAAGTTCA-ATTTAATT-CACTCAATATTGAGTGAATTAAATTGAACTTGTGTAATATGGTTAC------TTCTCTGAGGAAGATTTTTGAATGAAAA
gi|20 : AGCAGTAATGATGATGTTACTTTGAGA-TCGGGT
gi|3 : AAAGCCTGGTGACTCAGATGTTGTGTATGATAGAATA-TTAAGAAAGTGATTTTAAAG-------ATTAGTGTGCTCTAA-AAACAATATGTGACACTTTCTCTAGTGGAATTTTGCACTAAGTGGTTATAATTATGTTAATTTGAA--------TATAGGTACATGCTGTAATTGGTGGTAAATGACAACATTCATTTCATGCTACCCTGTAACCTG----TGATTATGAAAA---CACTAAAATTGATGTGGAAAACTCAAGGGATATCAAACATT--AATCATT-----AAACTATGTTCAATC--ATGCAAGCT-ATAAGGCTAAAAT-ATTAAATAACTAC------AAC-TGTTGGTGCAACAAAGTGGTTATGACGCAAAA-TGTTATGACTATTAATATTCATTGAA---------ATGCATCATTCTAAACTAAAGTAACATTGTGACTTAATGATTACGG-GCAACCATTCCTGTATTATGGTTGAAGGAAATACAGCAAGACAAAAT---AAAAC------------------ACA-ACATTTAATGAACATGAATTCATA-ACATGAAAA
gi|4 : agaaatgaagaagcaaacagaatatctgtatgttatcttatgaaggcaattgaaggccaatttccagggtcagccattgatgtggctttcaatgatactgttgaagctggaactgataatttgcaAAAGTCTGGTGAATCAGATGTCGAGTATGGTAGAATA-TTAAGAAAATGATTCTAAAGCAATTTGATAAAGGCGCTCTAA-AA-CAATATGTGATACTT---------GATTTTT------AGGAGTAATGATGATGTTACTTTGAAA-TCAGGTTAAAGAT-CAAGCTGTAATTGGTGGTAAATGACAGCATTTAATTCATGCTACTCAGTAATCTG----TGATTATGAAAA---CAATCAAATCAATGTAAGAAATTCAAGGGATATTAAACATTAAA--CATT-----AAGCTATGTTAAATC--TTACTAGTT-ATAAGCAAAAAACGATGAAATAACTAT------TAA-T--------------GTGATTATGAAACAAAC-TGTTACGACTATAAATATTCATTG----------------------TAGACTAAAGTAACATTGGAACTTAATGATTACTGAGCAACCATTCCTGTATCATGGCTAAAGGAGATATAGTCAGACTAAA-GAAAAAACTTGAAATAT-CA----AAAg
gi|4 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaTTTACTGAACATGAATTCATA-ACAAGAAATATAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttactgaacatgaattcataacaagaaatataa
gi|5 : tggaagaccaattgccactgtcagccattgatgtgcttttcgatgatactgttgaagcaggagctggtgatcatttacatgttaaaagtctggtgaatcagatgtcgagtatggtagaatattaagaaaatgattctaaagcaatttgataaaggcgctctaaaacaatatgtgatacttgatttttaggagtaatgatgatgttactttgaaatcaggttaaagatcaagctgtaattggtggtaaatgacagcatttaattcatgctactcagtaatctgtgattatgaaaacaatcaaatcaatgtaagaaattcaagggatattaaacattaaacattaagctatgttaaatcttactagttataagcaaaaaacgatgaaataactattaatgtgattatgaaacaaactgttacgactataaatattcattgtagactaaagtaacattggaacttaatgattactgagcaaccattcctgtatcatggctaaaggagatatagtcagactaaagaaaaaacttgaaatatcaaaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnATGATTCGTGCGCTCCAA-AA-CAATACGTGACATTTTATTTTTTGGAGTTTTGCACTAAGCAGTAATTATAATGTTAATTTGAA--------TATAGGCAGATTTTGTAATTGATGGTAAATGACAACATTCATTTCATGCTACTCAGTTACATG----TGATTATGAAAAAAACACTCAAACTAATGTAGGAAATTCAAGGGATATTAAAC--T-------TT-----AAACAATGTT---------ACTAGCTTATAAGTCCAAAATGAT-AAATAACTAC------TAAATATTGGTGCAACAAAGTGATTATGACGCAAAAATGTTATGACTATTGATATTCATTGAAATGCATCATG---------CTGAACTTAAGTAACATTGTGACGTAATGATTACGGAGCAACTATTCCTGTTTTATGGCTAAAGGAAATACAGTAGGATAAAATG--AAAACTTGAATTACTTA----AAACACATATTTAATGAACATGAATTCATA-ACATG
gi|6 : AACGCCTGGTGACTAAGATGTTGAGTATGATAAACAA-TTTAGAAAACGGCTTTAAAGTAATATAA------------------------GTGACACTTAATTTGGTTGAATTTTGCACTAAGCAGTAATGATGACGGTACTTTGATA-TCAGGATACAGGTATATACTGTAGATGGTGGTAAATAAGCGCATTCATTTCATGCTACTTAATAA-CTG----CGATTATGAAAA---CAATCAAATTAAAGTATGAATGTTAAGGAATATTCAACA----A-----T-----AAACTATATTAAATC--ATACTAGCT-GTAAGCCTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncacacaacaaagaacaacacaatagacctaaattt
gi|7 : atggatgtgcttttcaatgatgctgttgaagatggaactgatgatgatcaattgcatatttaAGCCTGGAGACTCCGATG----ATATGAT-GAGTAATTAA---------TC---ATTGA-ATGAT------ACTCCAAGAAAGACTAT-TCACCTTTTAGTTTGTTGGCTTTTACACTTAACAGTTTAGGTGATGTTAC-ATAAAA-TC----CATAAATACATGATATTAT------TAACTGGCGATGTT-A----ATGCTAC-CA------CG----TGATAATGACAC---TATCTAAATCAATGAATAATATTTAAGGTTTATTTAACCTT--G--TATTTATAGAAATAATG----ATCCGATGCAAGCT-ATtaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgcacataaatacgatagaccttaatgttaa
gi|8 : taaaagtggataaggcaaaatgatatctgcctgattaaatggctcaacagacaccaattgccacaatcgatccttgacgtgcttgtcggtgatgctcttgatgctgaaaacgaggatgacaatttggatgtttacgGCAGGAAATGC--TGGATATTAAACATTTTAT-CATT-----AAA-TATGTTTAACC--CTATCAGCT-ATAAACCTAACACGATAAAACAACTACATGTATTAA-TGTTAGTGCCGCAGGGTGAATATGAAGCAAGT-TTTTACGACTATTTAAGTTTAGTGAA---------
gi|9 : ttattaaaagtgattacgaaAGCATAAATTCATATACATGTATG-TAATTATTAAACTAAACTTAATACACAAGTTCA-ATGTAATT-CA-----------ATGAATTAAATTGAACTAATGTAATATGGTTAC------TTCCCTGAGGAAGATTTTTGAATGAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CAACTCTTACCGAACGAAAGAATAAAACAACGAATACAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGCGA