lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111
lowQualScore : 1 1 111 55555555555555555555555555555555555555555555555 1 2222222 1 333333 2222222222 11 444444444 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 000000000000000000000000000000000000 1 111 1 222222 77777777777777777777777777 111 1111 111 111111 111 2222 333333333333333333 111111 5555555555555555555555555555555555555555555555555555555555555 2222222222 333 11 11 1111 444444444444444444444444444444444444444444444444 1111 11 11 22222222 33333333333333 111 11111 1111 5555555555555555555555555 111 22222 22
lowQualScore : 5 3 6 111 22222222222222222222222222222222222222222222222 1 6 0 2222222 5 777777 1111111111 5 1 44 999999999 1 77 66 3 5 5 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 6 2 22 4 44 000000000000000000000000000000000000 0 2 3 7 111 2 6 222222 8 888 88 3 22222222222222222222222222 111 77 5 7777 3 0 77 4 3 000 6 666666 5 222 9999 666666666666666666 888 999999 5 5555555555555555555555555555555555555555555555555555555555555 66 999 4 5 6666666666 000 66 5 99 2 3 0000 4 555555555555555555555555555555555555555555555555 55 7777 22 66 6 3 3 77777 99999 99 1 55555555 8 0 55 4 55555555555555 3 0 3 000 666 3 55 99999 88 55 6666 5 5 44 2 9 1111111111111111111111111 7 5 111 1 55 33333 11 33
lowQualScore : . . . ... ............................................... . . . ....... . ...... .......... . . .. ......... . .. .. . . . ................................................................................................................. . . . .. . .. .................................... . . . . ... . . ...... . ... .. . .......................... ... .. . .... . . .. . . ... . ...... . ... .... .................. ... ...... . ............................................................. .. ... . . .......... ... .. . .. . . .... . ................................................ .. .... .. .. . . . ..... ..... .. . ........ . . .. . .............. . . . ... ... . .. ..... .. .. .... . . .. . . ......................... . . ... . .. ..... .. ..
lowQualScore : 0 3 0 777 55555555555555555555555555555555555555555555555 9 2 4 9999999 0 000000 9999999999 0 7 00 111111111 4 77 11 0 7 7 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 7 2 77 8 77 333333333333333333333333333333333333 0 5 2 0 000 5 8 888888 0 888 88 2 33333333333333333333333333 555 00 7 7777 3 4 44 0 9 333 7 444444 1 444 2222 444444444444444444 888 444444 0 2222222222222222222222222222222222222222222222222222222222222 99 666 4 0 3333333333 999 99 1 00 2 6 6666 0 333333333333333333333333333333333333333333333333 33 2222 77 22 9 6 6 55555 11111 33 1 33333333 7 9 55 0 44444444444444 6 3 6 111 444 6 22 99999 66 55 8888 2 8 66 7 3 1111111111111111111111111 5 4 333 6 66 77777 99 99
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATATT-AAAGCGGCATAACCAGTA---TT-----T-----------TCGAA---TCAATA-AAA-AC---TGGT-TATAATTGTAATATTTAGTATAAATTGTGAC------TATCTGGATCATGTCTGGTGC-AAAA-TACCGT----------TGT-TTATCGT-NAAAA--CATGTATTTAAACTCGCTATTATCGCCGATAT-TTGA-ATTA-----GA------C------CT-G-----TG----GAATAAC--GT-A---AAT-------------G---------ATTT-G-A--TA---------------C----G---TAAAC-G-TTCGGAAATTTCTGGGCATCATCGAT-----GGTTAAATCCG-GGTAAGCGG-TT----AAGTTTAAANTTAGATT-ATACCGCCGATCTTGATATATTCC----TATAT-AGCATAGTGGT-TATATAT-GCG----AT-CTG--NCACTCGGGCGATCCG--AGTTCGAA-TCCCG-TGACAAG-AANTATA-TTT-TTT------GTTCATTTCCC-NAGCAACACTA-TTTTTTCC---TACAGCG---CTCCATAAA---CGGCT-TC-TNAT-AT-C-AAAANA-NTTAAGGTTCC-AACAAAAT--GAAA----AA------AC----G------TC--CATA-TATGCATTTATA-TNTNT--------GCACATATCTAGCGACCGTTCTAATACTGAAGGATGACNGAATTGGCCGAGTA----TANACGATTG-------AAT----CGGAAATTT--------------------TA-CGA-TAATTTCNATCAGCGAAGCAGCTNA-TTTGCATAT-T-AGA-ATT-----ACTGATCA-GTAAAT------TTAGATTTAA--AACA-CGATTT----ATTTTCA-CGTTTA-AGAG--AGG---TATC-G-GC--TGTTAT--AAATGCATC--GAAGGCNATGAGAATT--CACGAANATGT--T---TGTCATTCATAAACAA-GTTGTTTATTTCTTTATGAAAGAAA-CAT-CTTCAGATACTGGTTATGCCGCTTTAA
Reference ( gi|1 ) : AAAATAAGTAGTATAAAAAGATCGAAGACATCAAATTATGCCTGAGTATAGATATTTCATATT-AAAGCGGCACAACCAGTA---TT-----T-----------TCAAA---TCAATA-AAA-ATA--TGAT-CATAATTGTAAGATTTAGTATGAATTGTGAT------TATCGGGATCATGTCTGGTGC--AA--TACCGT----------TGT-TTATCAT-AAAAACACATATACTTAAACTCACTATTATTGCCGATAT-TTGA-ATTA-----AA------C------C--A-----TA----GAATTAC--GT-A---AAT-------------G---------ATT------------------------C----G---TAAAC-G-TCCGGGTATTTCCGGGCATCATTGAT-----GATTAAATCCGTGAT-AGCAG-TT----ATGTTTCAACTTAGATTTATACCGCCGATCTTGATACATTCC----TTCAT-AGCATAGTGGT-TATATAT-ACA----AT-CTG--GCAATCGGTCGATCCG--AGTTCGAA-TCGCA-TAACAAG-AATTATA-TGT-TTT------GTTCATTTCCC-TGGCAACACTA-TATTTTCC---TACTGTG---CTCCTTAAA---CGGCT-AC-TAAT-AT-C-AAAACA-GTTAAGGCTCC-ACCAAAAT--GAAA----AA------AC----G------TC--CATA-TGTGCATTTATA-TATAT--------GCACATATCTAGCGATATTTCTAATACTGAAGGAAGACTGAATCAGCCGAATA----TATACTGTTG-------AAT----CGAAAATGT--------------------TA-CGA-CACTTTCCGTCAGCGAAGAAGCTTA-TTTGCATAT-T-AGA-ATT-----ACTGATCG-GTAAAT------TGAGGTTTAA--AACA-CGATTT----TTTTTCA-CGTTTA-AGAA--AGG---TATC-G-AC--TGGTAT--AAATGCATC--AAAGGCCATGAGAATT--CATAAACAT-T--T---TGGCATT-ATGAAAAA-GTTGTTTCTTTCTTTGTAAGAGAAA-TAT-CACCAGATACTGGCAATGCCGCTTTAA
gi|12 : TTAATATTTAAAGCAACATAACCAGTA---TT-----T-----------
gi|15 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagttttcgttataaaagaaatatcttcTT-AAAGCGACATAACCAGTA---TG-----T-----------TTGTA---T-AAT-----------TGAT--ATAAT----AGAT---GTAC--AT--TGAC------TATATGGATCATGTCTGCTGC--AAATTATTAT----------TGT-TTCTTAG-AAAAA-GCAAGTATTTAAACTCGCTA-TAACGCCGCTAT-TTGA-ATTA-----GA------CACAATAC--A-----TG----GAATAAC--GT-A---AAT-------------G---------ATT------------------------gctcgattcttt
gi|3 : taatgtaagtttacactgtT-AAAGCGGCATAACCAGTA---TC-----T-----------tagga
gi|11 : tagccagtttttatgttctttcaaatcaataaaatatttgtttatttgtaatattttgtataaattgtgaatttctggatcatgtttgctgcaaaatacagctgttcatcgttattatcattctatgatatttgaattagttctaacctgtagaataacgtactaaatgattaagaagttatatccgtaaacgcccagaaatttctgggcattatcgattaattcggagtaattcgaaaagtttaaacttagatttatgccgttgatattgataaactcctacatagcattgtggttatatctgcagatactagctcggacgatccgagttcgaatcccataataggtatataaacgactccttatataaacagttcagattccaacaaatgaaaaattatatgtgtctatatatgcatttatttcttagcaaatatatagcgactgctctaataatgaaggataacggaatttgccgagtataaacgattgagtcgtaaagtttacgataatttctataagtgaagcaacttatttgcacattagatttactgatcagttaatttaaacacaattcattactatcatttaagatatgcataggcagttataaatgcattcaaggtaataagaattcacaaaaatgtttataaaagaaaaatcttcGCATAACCAGTA---TT-----TAATATGTCCTTTCAAA---T-AATA-AAA-AAA--AGAGGTATAATTCTAATATTTAGTATAAATTGTGAC------TACCTTGATCATGCCTGGTGCAAAA--TACCATTAAATACCTCTGT-ATATCGTCAAAAAAACATGTATTTAAATGCGCTTTTGTCACCAATAT-TTTA-ATTA-----GA------C------CTGA-----TACGTGGAATGAC--AT-T---AAA-------------G---------ATTTTGTAGTTATATC-----------T----G---CAAAC-A-TACAGAAATTTCTGGGCATCATCGAT-----TAT----TCCG-GGTAAGCGGTTT----AAGTTTC
gi|2 : CATAACCATTA---TT-----A-----------CTACACTTTTGATA-ACA-ACGACTGGT--ATAATTGTAATATTTACCATGAATAATTAC------TAACTAGATCCTGTATGTTGC--AAAATATCAC----------TGT-TTATCGT-CAGAGT-CATACATTTAAACTTGCTGATATTTT---TAT-TTGA-CCTG-----AT------C------C--A-----TA----GAATAAC--GT-C---ACT-------------G---------ATTTAGTATATAATCGCCGTTATCAACC----G---TAAAT-G-TTCGGAGATTTCAAGGCAGT-TT--C-----GGTTAAAAACGAGGA-AACGA-TT----AAGTTTAAACTTAGATTGATATGG-------TGATA--TTCC----TACAT-GTCGTAGTTGTCTATAGATTATG----AT-CCA--GCA-------GACCCA--GGTTCAAA-TCCCG-TGAAAAG-TAATGTT-TGT-TTT--------TAGTTTCCC-TAGCAACACTAGTTTTTTTT---TATTACAGACCTCCTTAAA---CGGTT-TC-TCAT-AT-CCAAAATA-AATA-TGTTCC-AACAAAAA--GGAA----AA------AC----TAAATTTTC--CACA-TATACATTTATA-TCTTT--------CCAAATAGCTAGTGACCATTCTAAAACTGAAAGATAACGAAATTTGCCGATTA----TATACGACTG-------CGC----CGGAAGTTA--------------------TA-CGA-CAATTTGAAACAACGAA-ACAC--------CACAT-C-AAA-ATT-----ACTGATTA-GTTAAT------TTAGAATTAA--AACA-CTATTT----ATTT--A-CGTTTA-AGAG--GGG---TATC-GTGC--TGTCAT--AAAAGAAAC---AAGGCCAGGATAATC--CATAAATAT------------GTC-ACAAACAA-GTTGTTTATTTCGTTG
gi|20 : aATAACCAGCAATTTTGTCCAT-----------TCGAA---TCAATATACA-AC---TGGT--ATAATTGTAATAGTTAGTATAAATTGTGTC------TAAATGGATCAATTCTGGTACGAAA--TACCGT----------TGT-ccg
gi|3 : T-----T-----------TCAAA---TCAATA-AAATATT--TGTT-TAT--TTGTAATATTTTGTATAAATTGTGAA------TTTCTGGATCATGTTTGCTGC--AAAATACAGC----------TGT-TCATCGT------------TA-TTA---TCATT-CTAT----GATAT-TTGA-ATTAGTTCTAA------C------CT-G-----TA----GAATAAC--GT-ACTAAAT-------------G---------ATTAAGAAGTTATATC-----------C----G---TAAAC-G-CCCAGAAATTTCTGGGCATTATCGAT--------TAATTCGG-----AGTAA-TTCGAAAAGTTTAAACTTAGATTTATGCCGTTGATATTGATAAACTCC----TACAT-AGCATTGTGGT-TATATCT-GCAG---ATACTA--GC--TCGGACGATCCG--AGTTCGAA-TCCCA-TAATAGG----TATA-Tagtatcctctatatgaa
gi|14 : tagccagtttttatgttcAACA-AAA-CCC--CGATATATAAATGTAATATTTAGCATGAATTGTGAG------TATCTGGATCATAGCTTGTAA--AAATTACTGT----------TGTGTTA-CAT-CAAAA---------------TCACTATTATTGCTGATAT-TTCA-ATTA-----GA------C------CT-AATCCTTG----GAATAACCATT-AACTAAT-------------GGTTTAGTCTATT------------------------C----AATCTCAACTGTTTCTGAAATTTCTGGGCATCATTAAT-----aaacgactccttatataaacagttcagattccaacaaatgaaaaattatatgtgtctatatatgcatttatttcttagcaaatatatagcgactgctctaataatgaaggataacggaatttgccgagtataaacgattgagtcgtaaagtttacgataatttctataagtgaagcaacttatttgcacattagatttactgatcagttaatttaaacacaattcattactatcatttaagatatgcataggcagttataaatgcattcaaggtaataagaattcacaaaaatgtttataaaagaaaaatcttcagatactggttatgccgcttta
gi|10 : tATA-AAA-AC---TGGT--ATGATTGTAATATTAAGCATAAATTATGACATAATGTATCTATATCATATATGGTGCCAAA--TACCGT----------TGT-GTGTCGT-CAAAA-GTATGTATTTAAACCTGCTATTATCACCGATATATTGACATGA-----CA-------------C--G-----TG----CAATAAC--GTCA---AATATTTTATCTATCAG---------ATTTTAATAAATC--------------C----G---TAAAC-G-TTTGAAAATTTCCTGTCATCATCGATTACACGAT--AGGCTG-GGTAAACGG-TT----AAGTTTAAAAATAGATTtaa
gi|4 : tgatgaattttatccttttaatgcagtAA-A-A--TGGT-T-TAATTGTAATATTTAGTATAAATTGAGAC------CATCTGGATCATGTCTGGTGC--AAAATACCAT----------TGT-TTATTGT-AGAAAATCATGGATGAAAACTCACGATTATTGCCAATAT-TTGA-ATTA-----GACCTGACC------C--G-----TG----GAATAAC--AT-A---AAT-------------G---------ATT------------------------TAGTAG---TAAAT-G-TCCGAAAATTTATGGGCATCATCAA-------GTT-AATCCG-GGTAAGCAG-T------------AAGTTAA------ACCGCCAATCTTTATATATTCC----TATAT-AGCATGGTGGT-TATATCT-GCG----GA-TTG--TCACTCTGTTGATCCG--AGTTCAAATTCTCT-TAACAGG-AACTATA-TTT-TTT------GTTCATT-----AAGCAACACTA-T-TTTTCC---TATAGTG---CTCCATAAA---TGGCT-TT-TAAT-ATAA-AAAATA-CTT-AGGTTCC-AAAAAAAT--GAAG----AA------A
gi|22 : aagccttataacctgtaactatgtcctttCCAATCTTGTTATATTCAATGGTTTATGAGC----TGAT-CATG-AT--CA----A--CTG--CCACTTGGGCAATCC---------------CA-TTATAAG-AAATATA-CTT-TTT------GTTCATTTCCC-ATGCAAAACTA-TTTTTTaaaaaaattccattaggtcagcagtaaatttgcatattacagattactgatcagtaaattcagttctaactaattcacatttaagagagatattggcaatgcatcaaaatgcattgaaggccatgaaaattcatgaacataaacaaggtactggtcatgccgctata
gi|5 : ATTCC----CATGT-AGCAAAATGG---ATATAT--CAGGGGAT--TGCCGCA--TGAGCGATCCGGTAGCT---A-CCACAGTGATAAATAATT-TA-TTT-TTTATTTTGGTTAATTTCAC-CAGCAACACT----TTTTCCATTTACAGTT---GTCCATATA---CGGC--ACTTGCT-AT-C-AAAATAGGTTAA-------AACAAAAC--AAAAC---AA------AA----G------AC--TAT------------CG-TATCT--------GCATATATCTAGCAA
gi|6 : caggaatcatcggttaaacatgcaatataagatgtgtataaaagtttccatactgttatattATATAT-GTG----GA-TTG--TCATTTGGGAGATCCA--AGTTTGAA-TCCCG-TGACAAG-AATTTTA-CTTATTT------GTCCATTTCCCAGGGCAACATTT-TTTTTCCC---TTCAGTG---ATCCATGAA---TGTTT-TC-TCAT-ATTC-ATAAAA-TTTA--TTTCC-AACAAAA-----------AA------AT----G------TC--TATAATATAAATATATA-TGCATTAATCTTTGTACATATCTAGCAACAATTCCTATACAGATGGAAGAAAGAACTGGCTCAGTA----TAAACGATTT-------AAT----CAGAAGTTT--------------------TA-TGA-TGATTTTTATCAGCAAAGCAGCTAATTTTGCATATATAAGA-ATTACTAAACTGATAA-GTAAAT------ATAAATTTAA--AACA-TGA--T----TTATTCA-TGGGCA-AGAG--AGGTAATATC-G-AC--TGTTAT--AAATCTATG--GAGGGCGATGA-AATTTCCAAAAATGT-T--TGTCTGACATTCATAAATAT-GTTGTTCATTTCTTTATAAAATAAA-CAT-CTTTAGTTACTGGTTATGCCGCccgttccctgttatctttaatagatgatgccatcaaggattcctaataccaaaagattgcggaatttgaagggtatgtaaaattgcaatgcaacaggaaacagtatgaatatcatcggacattttacgatagtctcctttagcggaacagctaatttactgattagtaaatataaatttaaaatacgagttattcacgtgtaagaaaggtatcggccaaatatcctaaatttaattcacgaagatgcttgtcattcgtaaacaagttgtgtgtttctttatagatactggttatggcgctttaatg
gi|17 : --AGTTCAAA-CC-CAGTGACAAG-AATTATACTAT-TTT------GTTCATTACCA-TGGCAACACTGTTTTTTTCC---TGCAGGG---CTCCATAAA---CCGTT-TC-TCAT-AT-C-TATAAA-ATT-AGGTTCCGAC--AAAT--AAAA----A
gi|12 : TT------GTTTATTGCCC-TAGCGACACTG-T--TTTCC---CA-------------TAAATGTCGGCTCAC---ATCAT-C-AATA-A-ATTAAG---TT-AC--AGATTGGAAA----AA------ATATCTG------TC--CATA-TATGTATTTATA-TATTT--------GCACATATCTAACGACCTTGCTAATACTAAAGGATGGCGGAATTGACAGAGTATAATTATACGATTG-------AAT----CGGAAGTTT--------------------Ttcgatgaacgacgatgaaaatt
gi|7 : ttgTA-TGTTTTCC---TA----G---CAACATTAA---CGGCT-TC-TGAT-AT-T-AGA-----------------TCAAAAT--GAAA----GT------TC----T------TCTTCATA-TATGCATTTATA-TCTTT--------CGACATATTTAGTGAGCGTTCTAATACTGAAATATGACTGAATTGACTGAATA----TAAATGATTG-------AAT----CGGACATTT--------------------CAGTGA-TAATTTCAGTTACCGAAATAGCTAC-TTTGCATGT-T-AGA-ATT-----AGTAATCATGT---T------TTAGATTTTA--AACA-CGAATT----ATTT--A-CTTTTA-AATG--ACG---TATC-A-GC--TGTTTT--TCATGTATC--GAAGACAATGAGAATT--CGCAAG-AT-TGTT---TGCCATTCATAAACCA-TTTGTTTCTTTCTTTATGAAAGAAA-TAT-C---------TG---ATGTCGCTTTAcgttataaaagaaatatcttcaaatactggttatgttgctttaaatattaagctcgattcttt
gi|3 : TAAA---CGACT-CC-TTAT-AT----AAACA-GTTCAGATTCC-AACAAA-T--GAAA----AATTATATGT----G------TC--TATA-TATGCATTTATT-TCTTA--------GCAAATATATAGCGACTGCTCTAATAATGAAGGATAACGGAATTTGCCGAGTA----TAAACGATTG-------AGT----CGTAAAGTT--------------------TA-CGA-TAATTTCTATAAGTGAAGCAACTTA-TTTGCACAT-T-AGA-TTT-----ACTGATCA-GTTAAT------T----T---A--AACA-CAATTC----ATTACTATCATTTA-AGAT--ATG---CATA-G-GC--AGTTAT--AAATGCATT--CAAGGTAATAAGAATT--CACAAAAAT-G--T--------TT-ATAAA------------------------AGAAA-AAT-CTTCAGATACTGGTTATGCCGCTTTA
gi|9 : tagccagtttttatgttctttcaaatcaataaaatatttgtttatttgtaatattttgtataaattgtgaatttctggatcatgtttgctgcaaaatacagctgttcatcgttattatcattctatgatatttgaattagttctaacctgtagaataacgtactaaatgattaagaagttatatccgtaaacgcccagaaatttctgggcattatcgattaattcggagtaattcgaaaagtttaaacttagatttatgccgttgatattgataaactcctacatagcattgtggttatatctgcagatactagctcggacgatccgagttcgaatcccataataggtataTCC-AACAAAGT--GAAATAAAAA------ATT---G------TC--CATA-TATGCAATTATA-TCTAT--------GCACATATCAAGCGATCGTTCTAATCATGAAGGGTTTCTGAATTGGCCGAGTA----TAT-------------------------AAT---------------------------------TTCCATCAGCGAAGCTGCTTA-TTTGCATAT-T-AGA-ATT-----ACTGATCA-GTAA--------TGAGATTTAA--CGCA-CGATTT----ATT--CA-CGTTTA-AGAG--AGG---TATC-G-AC--TGTTAT--AATTGCATC--AAAGGCCATGAGAATT--AACGAAAATGT--T---TGTCATTCATAAACAATGTT-TTTCTTTATTTATGAAAGAAA-CAT-TTTCAGATACTTGTTATGCCGCTTT
gi|8 : tattcgaattaaaaatAAA----AA------AT----G------TC--CATGGTATACATTTATA-TATGT--------ATACATATCTATTGACTGTTCTGATACAGAAGGATGACTGAATTGGTTGAATA----TATACGATTGAATCAGGAATAAGCCGAGAATATAGGATTGAAACGTAATTTTTTA-AGA-TAATTTCTGTCAGCGAAGCAGCTAA-TTTGCATAT-T-AGA-ATT-----ACTGATCG-GTAAAT------TTAGATTTAA--AATA-CAGTTTACCGGTATTAA-CATTTA-A-AC--AGG---TTTCTG-TC--T-TTATC-AAATGTTT-------GTC------ATT--CATAAACA----------------------------CGCTTCTTTCTTTATAAAAGAGATTATGTTCCA-ATACTGGTTATGCCGATTT
gi|23 : tTA-TATGCATTTATACTGTATCCCT----GCATATATCTAGCGACCGTTCGGATACTGAAGc
gi|21 : CATACCAAACGACCGTTGTAATACCTAAGGA-TACCTAAT-GGAAGAGTA----TAAACGATTG-------AAT----TGGGCATAT--------------------TA-CGA-TAATTTTGAACAGTGATACAGCTTA-TATGCATAT-T------TT-----ACTagtggcatacgattgaaccggaatttt
gi|13 : gtgAT----CAGAAATTT--------------------TG-TGATCATGTTC-ATCAGCAAAG---CTCA-TTTGCATCT-C-ACA-ATT-----ACTGATCC-ATAAGT------ATAGATTT-A--AACAGCGA--T----TTATTCA-CGTCTC-AGTG--AAA---TATC-A-GC--TGTTAT--AAATATATG--GAAGGCAATCAAAA-------AAACAT-T--T---TGCCATTCATAAGCAA-GTTGTTTATTTCTTCATAAAAAAAA-
gi|5 : aactggcctatgcacaacaccAT----CGGACATTT--------------------TA-CGA-TAGTCTCCTTTAGCGGAACAGCTAA-TTT---------------------ACTGATTA-GTAAAT------ATAAATTTAA--AATA-CGAGTT----ATT--CA-CGTGTA-AGAA--AGG---TATC-G-GC-------C--AAAT--ATCCTAAA---TTT---AATT--CACGAAGATGC--T---TGTCATTCGTAAACAA-GTTGTGTGTTTCTTTAT-----------------AGATACTGGTTATGGCGCTTTAAgcttatgtggttctggct
gi|4 : caggaatcatcggttaaacatgcaatataagatgtgtataaaagtttccatactgttatattattcccatgtagcaaaatggatatatcaggggattgccgcatgagcgatccggtagctaccacagtgataaataatttattttttattttggttaatttcaccagcaacactttttccatttacagttgtccatatacggcacttgctatcaaaataggttaaaacaaaacaaaacaaaagactatcgtatctgcatatatctagcaaccgttccctgttatctttaatagatgatgccatcaaggattcctaataccaaaagattgcggaatttgaagggtatgtaaaattgcaatgcaacaggaaacagtatgaatatcA-TTTGCATAT-T-ACAGATT-----ACTGATCA-GTAAAT------TCAGTTCTAACTAA----------------TTCA-CATTTA-AGAG--AGA---TATT-G-GCAATG-CATCAAAATGCATT--GAAGGCCATGAAAATT--CATGAACAT-tg
gi|16 : aagccttataacctgtaactatgtcctttaaaatggtttaattgtaatatttagtataaattgagaccatctggatcatgtctggtgcaaaataccattgtttattgtagaaaatcatggatgaaaactcacgattattgccaatatttgaattagacctgacccgtggaataacataaatgatttagtagtaaatgtccgaaaatttatgggcatcatcaagttaatccgggtaagcagtaagttaaaccgccaatctttatatattcctatatagcatggtggttatatctgcggattgtcactctgttgatccgagttcaaattctcttaacaggaactatattttttgttcattaagcaacactatttttcctatagtgctccataaatggcttttaatataaaaaatacttaggttccaaaaaaatgaagaaaaaaaaaattccattaggtcagcagtaaA-CTTGCATAT-T-A------------CTGATCA-GTAAATATAATATTAATTTTAA--AACA-C-------------TCA--ATGAA-AGAG--AGA---TATC-G-AC--TGTTAT---AACCCATG--AAAGGATATGAGAATT--AACAAAAATGT--T---TATTATTCATAAACAA-GTTATTTATTTATTTATGA---AAA-TAA-CAaaacaaggtactggtcatgccgctata
gi|18 : taatctcacatcata----TTTCTCA-TATCTATAAAATTAGG---TTCC-G-AC--AAATAA--AAATCGATG--AACGACGATGAAAATT--CACGAAAATGT--T---TGTCATTCATAAATAT-ATTGTTCATTTCTTTATGAAATAAA-CAT-CTTTAGTTACTGGTTATGTTGCTTTAAtaattctttagttctggttatacaat
gi|24 : AAGGTGATGAAAATT--CATGAAAATGT--T---TGTCATT-
gi|12 : ttctcatatctataaaactaagttctgctaaaaaaaaaatcagtggTTTCGTTATAAAAGAAA-TAT-CTTCAAATACTGGTTATGTTGCTTTAA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TTATTGGCAAAATCAGCCAAATATTTGCCTTAAACCATTAATAACACACATATTTAATACAAGTACGTCAAAGACATGTACAAACATATTATATTATACACTTTATACAAATACAATTACAGAC
Unaligned ( gi|25 ): TTAGACCTGACATGTGAAAAAACATCAAAGGTTTAGTCTGTCAGATGTTGATATATCTGTAAATGTTTTAAAATTTCC
Unaligned ( gi|26 ): CCGAGTATGTGATAAGGTTTAAACTAAAAATTTATATGGTTGATAGCATAGTGGTCATATCTTTGGATTATAACTCT
Unaligned ( gi|27 ): AGCAAATCAGAATATCGCACTCTTTGTACATATATAGCAACCATTCTTTGTTACCTTTAATA
Unaligned ( gi|28 ): ACACCAATGAAGGATGACGGAATTGGCCGAGTATGTTACGATT
Unaligned ( gi|29 ): AAACAAGTAGTAAAAAGAAGTATAATTGTCCCGGGA
Alignments
lowQualScore : 11111111111111111111111111111111111111
lowQualScore : 1 111 55555555555555555555 22222 111111 1111111111 22222222222 11111 5555555555555555 11111 2222222222222 11111111111111111111111111111111111111 33333333333 11 2 111111 111111111 111111 1 1111111111111111111 1111 4444444444444444444444444444444444 11111 11111111111 11111111111111111111111 1111111 11111111111111 1111111 1111111111111 111111 222222222222 22222222
lowQualScore : 3 3 111 33333333333333333333 777 5 00000 888 4 4 222222 9999999999 4 9999 55555555555 0 6 555 5 5 22222 5 7777777777777777 66 99999 7777777777777 5 88888888888888888888888888888888888888 5 5 1 88888888888 1 6 00 555 4 2 1 6 6 999999 222 6 77 444444444 1 66 0 3 66 33 5 5 3 7 5 5 444444 3 66 9999 4 888 11 0 1 4 7777777777777777777 2 1111 2222222222222222222222222222222222 4 0 00000 1 1 7777 55555555555 77 44444444444444444444444 0 0000000 0 9999 77 1 2 11111111111111 1 3 55 0000000 2 3 3 3 3 3333333333333 88888 3 3 2 000000 55 55 333333333333 3 2 44444444 3 666 3 55 88 33 99 3 4 9999 1 7777 2 33 0 5 4 33 7777 2
lowQualScore : . . ... .................... ... . ..... ... . . ...... .......... . .... ........... . . ... . . ..... . ................ .. ..... ............. . ...................................... . . . ........... . . .. ... . . . . . ...... ... . .. ......... . .. . . .. .. . . . . . . ...... . .. .... . ... .. . . . ................... . .... .................................. . . ..... . . .... ........... .. ....................... . ....... . .... .. . . .............. . . .. ....... . . . . . ............. ..... . . . ...... .. .. ............ . . ........ . ... . .. .. .. .. . . .... . .... . .. . . . .. .... .
lowQualScore : 0 3 777 11111111111111111111 333 0 44444 666 4 4 888888 4444444444 4 8888 44444444444 1 5 888 0 0 55555 0 5555555555555555 99 88888 5555555555555 0 55555555555555555555555555555555555555 7 7 1 22222222222 8 7 22 666 0 5 4 7 7 222222 888 7 11 000000000 0 77 4 0 99 66 0 0 6 6 0 0 444444 4 00 4444 4 888 66 5 0 4 1111111111111111111 4 4444 2222222222222222222222222222222222 0 9 00000 0 0 7777 88888888888 99 77777777777777777777777 2 0000000 2 6666 11 1 4 11111111111111 0 6 00 8888888 2 3 3 3 3 9999999999999 33333 3 6 5 555555 00 00 666666666666 6 0 22222222 6 444 6 00 66 22 55 1 0 2222 0 1111 0 77 5 5 1 77 7777 6
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC--TGGTTATAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTAG-----AC-C----C-----G-----TGGAATAAC--GT-A---AAT-------------GA-TT------TAGT-------A--T----------------CGTAAAC-G-TCCGGAAATTTCCGGGCATCATCGAT------ATTAAATCCG-GGTAAGCGG-TTAAGTTTAAACTTAGATTTATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTNATA-T-C-A--AAANAATTAAGG-TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TCTNTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTA----TTTTCA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTATTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
Reference ( family-968 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC--TGGTTATAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTAG-----AC-C----T-----G-----TGGAATAAC--GT-A---AAT-------------GA-TT------TGAT-------A-------------------CGTAAAC-G-TTCGGAAATTTCTGGGCATCATCGAT-----GGTTAAATCCG-GGTAAGCGG-TTAAGTTTAAANTTAGATT-ATACCGCCGATCTTGAT-AT-ATTC------CTATATAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NAGCAACACTA----TTTTTT-CC---TACAGCGCTCCATAAACGGCTTCTNATA-T-C-A--AAANANTTAAGG-TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TNTNTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTA----TTTTCA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAANATGTTTGT----CATTCATAAACAA-GTTGTTTATTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
gi|1 : TTCATATT-AAAGCGGCACAACCAGTA---TT--------T-----------TCAAATCAATA-AAA-ATA-TGATCATAATTGTAAGATT-TAG-TATGAATTGTGAT------TATCGGGATCATGTCTGGTGCAA--TACCGT----------TGT-TTATCAT---AAAAA--CACATATACTTAAACTCACTATTATTGCCGATAT-TTGA-ATTAA-----AC-C----------A-----TAGAATTAC--GT-A---AAT-------------GA-TT-------------------------------------CGTAAAC-G-TCCGGGTATTTCCGGGCATCATTGAT-----GATTAAATCCGTGATA-GCAG-TTATGTTTCAACTTAGATTTATACCGCCGATCTTGAT-AC-ATTC------CTTCATAGCATAGTGGT-TATAT-AT-AC-AAT-CTGGCAATCGGTCGATCCG--AGTTCGAA-TCGC-ATAACAAGAATTATATG-T-TTT------GTTCATTTCCC-TGGCAACACTA----TATTTT-CC---TACTGTGCTCCTTAAACGGCTACTAATA-T-C-A--AAACAGTTAAGG-CTCCACCAAAATGAAA----AA------A-----C-G------TC-----------CATA-TGTGCATTTATA-----TATATGCACATATCTAGCGATATTTC----TAATAC-----------TGAA--GG----------AAGAC-------TGAATCAG-------CCGAATA----TA-TACTGTTGAATCGAAAATGT------T-A-CG--ACACTTTCCGT-CAGC--GAAGAAGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TGA--GGTT--TAA------------AACA-CGATTTT----TTTTCA-CGTTTAAGAAAGG---TATCG-AC--TGGTAT--AAATGCATCAAA-GGCCATGAG---AATTCATAAACAT-TTTGG----CATT-ATGAAAAA-GTTGTTTCTTTCTTTGTAAGAGAAA-TA----TCACCAGATACTGGCAATGCCGCTTTAA
gi|10 : aaaataagtagtataaaaagatcgaagacatcaaattatgcctgagtatagatatATA-AAA-AC--TGGT-ATGATTGTAATATT-AAG-CATAAATTATGACATAATGTATCTATATCATATATGGTGCCAAATACCGT----------TGT-GTGTCGT---CAAAAG-TATGTAT--TTAAACCTGCTATTATCACCGATATATTGACAT--G-----AC-A----C-----G-----TGCAATAAC--GTCA---AATATTTTATCTATCAGATTT------TAAT-------AAATC---------------CGTAAAC-G-TTTGAAAATTTCCTGTCATCATCGATTACACGAT--AGGCTG-GGTAAACGG-TTAAGTTTAAAAATAGATT-
gi|11 : tgatgaattttatccttttaatgcagtGCATAACCAGTA---TT--------TAATATGTCCTTTCAAAT-AATA-AAA-AAAAGAGGTATAATTCTAATATT-TAG-TATAAATTGTGAC------TACCTTGATCATGCCTGGTGCAAAATACCATTAAATACCTCTGT-ATATCGTCAAAAAAA--CATGTAT--TTAAATGCGCTTTTGTCACCAATAT-TTTA-ATTAG-----AC-C----TGATACG-----TGGAATGAC--AT-T---AAA-------------GA-TT------TTGT-------AGTTATATC-----------TGCAAAC-A-TACAGAAATTTCTGGGCATCATCGAT-----TAT----TCCG-GGTAAGCGGTTTAAGTTT
gi|12 : T-T-GTT------GTTTATTGCCC-TAGCGACACTG----TTTTC----------------CCATAAATGTCGGCTCACA-T-C-ATCAATAAATTAAG--TT---ACAGATTGGAA----AA------AATATCT-G------TC-----------CATA-TATGTATTTATA-----TATTTGCACATATCTAACGACCTTGC----TAATAC-----------TAAA--GG----------ATGGC-------GGAATTGA-------CAGAGTATAATTA-TACGATTGAATCGGAAGTTT------T---CGTTATAAc
gi|12 : TTTCGTTATAAAAGAAA-TA----TCTTCAAATACTGGTTATGTTGCTTTAAaagaaatatcttcaaatactggttatgttgctttaaatattaagctcgattcttt
gi|12 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagtTTAATATTTAAAGCAACATAACCAGTA---TT--------T-----------atattaagctcgattcttt
gi|13 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagttttcgttataaaagaaatatcttcAACTGG-------CC---TA----TG-CACAACACCATCAGAAATTT------T-G-TG--ATCATGTTCAT-CAGC--AAAGC----------TCA-TTTG-CATCT-C-ACA-A---------TT-----A-CTGATCC-ATAAGT------ATA--GATT--TAA------------A-CAGCGATTTA----TT--CA-CGTCTCAGTGAAA---TATCA-GC--TGTTAT--AAATATATGGAA-GGCAATCAA---AA-----AAACAT-TTTGC----CATTCATAAGCAA-GTTGTTTATTTCTTCATAAAAAAAA-gctcgattcttt
gi|14 : TATAAATGTAATATT-TAG-CATGAATTGTGAG------TATCTGGATCATAGCTTGTAAAAATTACTGT----------TGTGTTA-CAT---CAAAA-----------------TCACTATTATTGCTGATAT-TTCA-ATTAG-----AC-C----T-----AATCCTTGGAATAACCATT-AACTAAT-------------GG-TT------TAGTCTATTCAA-------------------TCTCAACTGTTTCTGAAATTTCTGGGCATCATTAAT-----gcttatgtggttctggct
gi|15 : taacaaaaccccgataTT-AAAGCGACATAACCAGTA---TG--------T-----------TTG---------------------TATAATTG--ATATAATAGATGTACATTG--AC------TATATGGATCATGTCTGCTGCAAATTATTAT----------TGT-TTCTTAG---AAAAAG-CAAGTAT--TTAAACTCGCTATAA-CGCCGCTAT-TTGA-ATTAG-----ACACAATAC-----A-----TGGAATAAC--GT-A---AAT-------------GA-TT------Ttaa
gi|16 : taatgtaagtttacactgt-------TAA-CTTG-CATAT-T-A----------------------CTGATCA-GTAAATATAATATTA--ATTT--TAA------------AACA-C-------------TCA--ATGAAAGAGAGA---TATCG-AC--TGTTAT--AACC-CATGAAA-GGATATGAG---AATTAACAAAAATGTTTAT----TATTCATAAACAA-GTTATTTATTTATTTATGAAAATAA-CATAATTCTTTAG-TTCTGGTTATACagga
gi|17 : taatctcacatca--AGTTCAAA-CCCA-GTGACAAGAATTATACTAT-TTT------GTTCATTACCA-TGGCAACACTG----TTTTTTTCC---TGCAGGGCTCCATAAACCGTTTCTCATA-T-C-T--ATAAAATT-AGG-TTCCGAC-AAATAAAA----Aaat
gi|18 : GAACGACGATGAA---AATTCACGAAAATGTTTGT----CATTCATAAATAT-ATTGTTCATTTCTTTATGAAATAAA-CA----TCTTTAGTTACTGGTTATGTTGCTTTAAtcgatgaacgacgatgaaaatt
gi|2 : tttctcatatctataaaattaggttccgacaaataaaaatcgatCATAACCATTA---TTACTACACTT-----------TTGA--TAACA-ACG-AC--TGGT-ATAATTGTAATATT-TAC-CATGAATAATTAC------TAACTAGATCCTGTATGTTGCAAAATATCAC----------TGT-TTATCGT---CAGAGT-CATACAT--TTAAACTTGCT---------GATAT-TTTT-ATTTG-----AC-C----T-----GATCCATAGAATAAC--GT-C---ACT-------------GA-TT------TAGT-------ATATAATCGCCGTTATCAACCGTAAAT-G-TTCGGAGATTTCAAGGCAGTTTCG--------GTTAAAAACG-AGGAAACGA-TTAAGTTTAAACTTAGATTGATA----------TGGTGAT-ATTC------CTACATGTCGTAGTTGTCTATAG-ATTAT-GAT-CCAGCA-------GACCCA--GGTTCAAA-TCCC-GTGAAAAGTA--ATGTT-T-GTT------TTTAGTTTCCC-TAGCAACACTAGTTTTTTTTT-AT---TACAGACCTCCTTAAACGGTTTCTCATA-T-CCA--AAATAAATA-TG-TTCCAACAAAAAGGAA----AA------A-----C-TAAATTTTC-----------CACA-TATACATTTATA-----TCTTTCCAAATAGCTAGTGACCATTC----TAAAAC-----------TGAA--AG----------ATAAC-------GAAATTTG-------CCGATTA----TA-TACGACTGCGCCGGAAGTTA------T-A-CG--ACAATTTGAAA-CAAC--GAAACA-C----------------CACAT-C-AAA-A---------TT-----A-CTGATTA-GTTAAT------TTA--GAAT--TAA------------AACA-CTATTTA----TTT--A-CGTTTAAGAGGGG---TATCGTGC--TGTCAT--AAAAGAAAC-AA-GGCCAGGAT---AATCCATAAATATG------------TCACAAACAA-GTTGTTTATTTCGTT
gi|20 : aATAACCAGCAATTTTGTCCA---T-----------TCGAATCAATATACA-AC--TGG-TATAATTGTAATAGT-TAG-TATAAATTGTGTC------TAAATGGATCAATTCTGGTACGAAATACCGT----------TGT-gccg
gi|21 : CATACCAAACGACCGTTG----TAATAC-----------CTAA--GG----------AT-AC-------CTAAT-GG-------AAGAGTA----TA-AACGATTGAATTGGGCATAT------T-A-CG--ATAATTTTGAA-CAGT--GATACAGC-------TTA-TATG-CATAT-T---------------TT-----A-CTagtatcctctatatgaa
gi|22 : gtgCCAATCTTGTT-AT-ATTCAATGGTTTATG-AGC----TGAT-CATG--AT--C-AA--CTGCCACTTGGGC--------------AA-TCCC-ATTATAAGAAATATACT-T-TTT------GTTCATTTCCC-ATGCAAAACTA----TTTTTT-
gi|23 : TA-TATGCATTTATACTGTATCCCTGCATATATCTAGCGACCGTTC----GGATAC-----------TGAA--G--------------------------AGTGG-------C-----------A-TACGATTGAACCGG-AATTT------T-
gi|24 : GAA-GGTGATGAA---AATTCATGAAAATGTTTGT----CATT
gi|28 : ttctcatatctataaaactaagttctgctaaaaaaaaaatcagtg-----------TGAA--GG----------ATGAC-------GGAATTGG-------CCGAGTA----TGTTACGATT
gi|3 : acaccaaT--------T-----------TCAAATCAATA-AAATAT--TTGTT-TATTTGTAATATT-TTG-TATAAATTGTGAA------TTTCTGGATCATGTTTGCTGCAAAATACAGC----------TGT-TCATCGT---TA--------------TTA---TCATT-CTAT----GATAT-TTGA-ATTAGTTCTAAC-C----T-----G-----TAGAATAAC--GT-ACTAAAT-------------GA-TTAAGAAGTTAT-------ATC-----------------CGTAAAC-G-CCCAGAAATTTCTGGGCATTATCGAT--------TAATTCGG-AGTAATTCG-AAAAGTTTAAACTTAGATTTATGCCGTTGATATTGAT-AA-ACTC------CTACATAGCATTGTGGT-TATAT-CT-GCAGATACTAGC--TCGGACGATCCG--AGTTCGAA-TCCC-ATAATAGG---TATAT
gi|3 : tagccagtttttatgttcATAAACGACTCCTTATA-T------AAACAGTTCAGA-TTCCAACAAA-TGAAA----AATTATATG-----T-G------TC-----------TATA-TATGCATTTATT-----TCTTAGCAAATATATAGCGACTGCTC----TAATAA-----------TGAA--GG----------ATAAC-------GGAATTTG-------CCGAGTA----TA-AACGATTGAGTCGTAAAGTT------T-A-CG--ATAATTTCTAT-AAGT--GAAGCAAC-------TTA-TTTG-CACAT-T-AGA-T---------TT-----A-CTGATCA-GTTAAT------TT-----------A------------AACA-CAATTCA----TTACTATCATTTAAGATATG---CATAG-GC--AGTTAT--AAATGCATTCAA-GGTAATAAG---AATTCACAAAAATGTTT-----------ATAAA------------------------AGAAA-AA----TCTTCAGATACTGGTTATGCCGCTTTAaaacgactccttatataaacagttcagattccaacaaatgaaaaattatatgtgtctatatatgcatttatttcttagcaaatatatagcgactgctctaataatgaaggataacggaatttgccgagtataaacgattgagtcgtaaagtttacgataatttctataagtgaagcaacttatttgcacattagatttactgatcagttaatttaaacacaattcattactatcatttaagatatgcataggcagttataaatgcattcaaggtaataagaattcacaaaaatgtttataaaagaaaaatcttcagatactggttatgccgcttta
gi|4 : tagccagtttttatgttctttcaaatcaataaaatatttgtttatttgtaatattttgtataaattgtgaatttctggatcatgtttgctgcaaaatacagctgttcatcgttattatcattctatgatatttgaattagttctaacctgtagaataacgtactaaatgattaagaagttatatccgtaaacgcccagaaatttctgggcattatcgattaattcggagtaattcgaaaagtttaaacttagatttatgccgttgatattgataaactcctacatagcattgtggttatatctgcagatactagctcggacgatccgagttcgaatcccataataggtatTA-AAA-----TGGTT-TAATTGTAATATT-TAG-TATAAATTGAGAC------CATCTGGATCATGTCTGGTGCAAAATACCAT----------TGT-TTATTGT---AGAAAATCATGGAT--GAAAACTCACGATTATTGCCAATAT-TTGA-ATTAG-----AC-C----TGACCCG-----TGGAATAAC--AT-A---AAT-------------GA-TT------TAGT-------A--------------------GTAAAT-G-TCCGAAAATTTATGGGCATCATCAA-------GTT-AATCCG-GGTAAGCAG--TAAG-TTAA------------ACCGCCAATCTTTAT-AT-ATTC------CTATATAGCATGGTGGT-TATAT-CT-GC-GGA-TTGTCACTCTGTTGATCCG--AGTTCAAATTCTC-TTAACAGGAACTATATT-T-TTT------GTTCATT-----AAGCAACACTA-----TTTTT-CC---TATAGTGCTCCATAAATGGCTTTTAATA-TAA-A--AAATACTT-AGG-TTCCAAAAAAATGAAG----AA------A-----
gi|4 : aagccttataacctgtaactatgtccttAAATTCCAT-TAGG--TCAGCAGT-------AAA-TTTG-CATAT-T-ACAGA---------TT-----A-CTGATCA-GTAAAT------TCA--GTTC--TAACT----------AA----------------TTCA-CATTTAAGAGAGA---TATTG-GCAATGC-ATCAAAATGCATTGAA-GGCCATGAA---AATTCATGAACATaaaaaaattccattaggtcagcagtaaatttgcatattacagattactgatcagtaaattcagttctaactaattcacatttaagagagatattggcaatgcatcaaaatgcattgaaggccatgaaaattcatgaacataaacaaggtactggtcatgccgctata
gi|4 : aagccttataacctgtaactatgtcctttaaaatggtttaattgtaatatttagtataaattgagaccatctggatcatgtctggtgcaaaataccattgtttattgtagaaaatcatggatgaaaactcacgattattgccaatatttgaattagacctgacccgtggaataacataaatgatttagtagtaaatgtccgaaaatttatgggcatcatcaagttaatccgggtaagcagtaagttaaaccgccaatctttatatattcctatatagcatggtggttatatctgcggattgtcactctgttgatccgagttcaaattctcttaacaggaactatattttttgttcattaagcaacactatttttcctatagtgctccataaatggcttttaatataaaaaatacttaggttccaaaaaaatgaagaaaaaaaAAA-CA---------AGGTACTGGTCATGCCGCTATAaaacaaggtactggtcatgccgctata
gi|5 : aagccttataacctgtaactatgtcctttaaaatggtttaattgtaatatttagtataaattgagaccatctggatcatgtctggtgcaaaataccattgtttattgtagaaaatcatggatgaaaactcacgattattgccaatatttgaattagacctgacccgtggaataacataaatgatttagtagtaaatgtccgaaaatttatgggcatcatcaagttaatccgggtaagcagtaagttaaaccgccaatctttatatattcctatatagcatggtggttatatctgcggattgtcactctgttgatccgagttcaaattctcttaacaggaactatattttttgttcattaagcaacactatttttcctatagtgctccataaatggcttttaatataaaaaatacttaggttccaaaaaaatgaagaaaaaaaaaattccattaggtcagcagtaaatttgcatattacagattactgatcagtaaattcagttctaactaattcacatttaagagagatattggcaatgcatcaaaatgcattgaaggccatgaaaattcatgaacatAT-ATTATTC------CCATGTAGCAAAATGGA-TATATCAG-GG-GAT--TGCCGCATGAGCGATCCGGTAGCT---A-CCACAGTGATAAATAATTTATT-T-TTTATTTTGGTTAATTTCAC-CAGCAACAC-------TTTTT-CCATTTACAGTTGTCCATATACGGCACTTGCTA-T-C-A--AAAT-----AGG-TTAAAACAAAACAAAAC---AA------A-----A-G------AC-----------TAT------------CG-----TATCTGCATATATCTAGCAACCGTTCCCTGTTATCT-----------TTAAT-AG----------ATGATGCCATCAAGGATT---------CCTAATAC---CA-AAAGATTG---CGG-AATTTGAAGGGT-A-TGT-AAAATTGCAATGCAACAGGAAACAGTATGAATATCA-TCGGACATTT-T-ACG-ATAGTCTCCTTT-----AGCGGAACA-GCTAAT------TTACTGATTAGTAAATATAAATTTAAAATA-CGAGTTA------TTCA-CGTGTAAGAAAGG---TATCG-GC-------C--AAAT--ATC------CTA--AATTTAATTCACGAAGATGCTTGT----CATTCGTAAACAA-GTTGTGTGTTTCTTTAT--------------------AGATACTGGTTATGGCGCTTTAA
gi|6 : caggaatcatcggttaaacatgcaatataagatgtgtataaaagtttccatactgttATAT-AT-GT-GGA-TTGTCATTTGGGAGATCCA--AGTTTGAA-TCCC-GTGACAAGAATTTTACT-TATTT------GTCCATTTCCCAGGGCAACATTT----TTTTTC-CC---TTCAGTGATCCATGAATGTTTTCTCATATT-C-A--TAAAATTTA--T-TTCCAACA-----AAA----AA------A-----T-G------TCTATAATATAAATATA-TATGCA-TTA-A-----TCTTTGTACATATCTAGCAACAATTC----CTATAC-----------AGAT--GG----------AAGAA-------AGAACTGG-------CTCAGTA----TA-AACGATTTAATCAGAAGTTT------T-A-TG--ATGATTTTTAT-CAGC--AAAGCAGC-------TAATTTTG-CATATATAAGA-A---------TTACTAAA-CTGATAA-GTAAAT------ATA--AATT--TAA------------AACA-TGATTTA------TTCA-TGGGCAAGAGAGGTAATATCG-AC--TGTTAT--AAATCTATGGAG-GGCGATGA----AATTTCCAAAAATGTTTGTCTGACATTCATAAATAT-GTTGTTCATTTCTTTATAAAATAAA-CA----TCTTTAGTTACTGGTTATGCCGCtg
gi|7 : TA----TGTTTT-CC---TA----GCAACATTAACGGCTTCTGATA-T-T-A------------GA-T-----CAAAATGAAA----GT------T-----C-T------TCTT---------CATA-TATGCATTTATA-----TCTTTCGACATATTTAGTGAGCGTTC----TAATAC-----------TGAA--AT----------ATGAC-------TGAATTGA-------CTGAATA----TA-AATGATTGAATCGGACATTT------C-AGTG--ATAATTTCAGT-TACC--GAAATAGC-------TAC-TTTG-CATGT-T-AGA-A---------TT-----A-GTAATCATGT---T------TTA--GATT--TTA------------AACA-CGAATTA----TTT--A-CTTTTAAATGACG---TATCA-GC--TGTTTT--TCATGTATCGAA-GACAATGAG---AATTCGCAAGATTGTTTGC----CATTCATAAACCA-TTTGTTTCTTTCTTTATGAAAGAAA-TA----TCT
gi|8 : AAA----AA------A-----T-G------TC-----------CATGGTATACATTTATA-----TATGTATACATATCTATTGACTGTTC----TGATACAGAAGGATGACTGAATTGGTTGAATATATACGAT-------TGAATCAGGAATAAGCCGAGAA----TA-TAGGATTGAAACGTAATTTT------TTA-AG--ATAATTTCTGT-CAGC--GAAGCAGC-------TAA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TTA--GATT--TAA------------AATA-CAGTTTACCGGTATTAA-CATTTAA-ACAGG---TTTCT-GT--CTTTATC-AAATGTTT-----GTC----------ATTCATAAACACGCTTCT------TTC-------------TTT--------ATAAAAGAGATTA----TGTTCCAATACTGGTTATGCCGATTTgatgtcgcttta
gi|9 : tAATTAAAAATTCCAACAAAGTGAAATAAAAA------A-----TTG------TC-----------CATA-TATGCAATTATA-----TCTATGCACATATCAAGCGATCGTTC----TAATCA-----------TGAA--GG----------GTTTC-------TGAATTGG-------CCGAGTA----TA------------------------------------TAATTTCCAT-CAGC--GAAGCTGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAA--------TGA--GATT--TAA------------CGCA-CGATTTA----TT--CA-CGTTTAAGAGAGG---TATCG-AC--TGTTAT--AATTGCATCAAA-GGCCATGAG---AATTAACGAAAATGTTTGT----CATTCATAAACAATGTT-TTTCTTTATTTATGAAAGAAA-CA----TTTTCAGATACTTGTTATGCCGCTTTc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTATTGGCAAAATCAGCCAAATATTTGCCTTAAACCATTAATAACACACATATTTAATACAAGTACGTCAAAGACATGTACAAACATATTATATTATACACTTTATACAAATACAATTACAGAC
Unaligned ( gi|25 ): TTAGACCTGACATGTGAAAAAACATCAAAGGTTTAGTCTGTCAGATGTTGATATATCTGTAAATGTTTTAAAATTTCC
Unaligned ( gi|26 ): CCGAGTATGTGATAAGGTTTAAACTAAAAATTTATATGGTTGATAGCATAGTGGTCATATCTTTGGATTATAACTCT
Unaligned ( gi|27 ): AGCAAATCAGAATATCGCACTCTTTGTACATATATAGCAACCATTCTTTGTTACCTTTAATA
Unaligned ( gi|29 ): AAACAAGTAGTAAAAAGAAGTATAATTGTCCCGGGA
Alignments
lowQualScore : 1 111 55555555555555555555 22222 111111 1111111111 22222222222 3333333333333333333333333 11111 2222222222222 999999999999999999999999999999999999999 33333333333333333 11 111111 111111111 111111 11111 1111 4444444444444444444444444444444444 11111 11111111111 11111111111111111111111 1111111 11111111111111 1111111 1111111111111 111111 222222222222 22222222
lowQualScore : 1 3 111 33333333333333333333 777 5 00000 888 4 4 222222 9999999999 4 9999 55555555555 0 2 44 1 5 5 3333333333333333333333333 66 99999 7777777777777 5 9999 111111111111111111111111111111111111111 5 0 2 99999999999999999 6 00 111 3 2 1 6 6 999999 0 222 6 77 444444444 1 3 0 3 66 33 5 5 3 7 5 5 444444 3 777 9999 4 888 11 3 1 4 8888 222 11111 1 0000 2222222222222222222222222222222222 4 0 00000 2 7777 55555555555 77 44444444444444444444444 0 0000000 0 9999 77 1 2 11111111111111 1 3 55 0000000 2 3 3 3 3 3333333333333 88888 3 3 2 000000 55 55 333333333333 3 2 44444444 3 666 3 55 88 2 55 3 1 8888 1 77777 44 3 4 55 8888 2
lowQualScore : . . ... .................... ... . ..... ... . . ...... .......... . .... ........... . . .. . . . ......................... .. ..... ............. . .... ....................................... . . . ................. . .. ... . . . . . ...... . ... . .. ......... . . . . .. .. . . . . . . ...... . ... .... . ... .. . . . .... ... ..... . .... .................................. . . ..... . .... ........... .. ....................... . ....... . .... .. . . .............. . . .. ....... . . . . . ............. ..... . . . ...... .. .. ............ . . ........ . ... . .. .. . .. . . .... . ..... .. . . .. .... .
lowQualScore : 0 3 777 11111111111111111111 333 0 44444 666 4 4 888888 4444444444 4 8888 44444444444 1 2 55 4 0 0 9999999999999999999999999 99 88888 5555555555555 0 1111 333333333333333333333333333333333333333 7 4 7 77777777777777777 7 22 888 0 5 4 7 7 222222 7 888 7 11 000000000 0 0 4 0 99 66 0 0 6 6 0 0 444444 4 111 4444 4 888 66 2 0 0 1111 999 77777 4 4444 2222222222222222222222222222222222 0 9 00000 4 7777 88888888888 99 77777777777777777777777 2 0000000 2 6666 11 1 4 11111111111111 0 6 00 8888888 2 3 3 3 3 9999999999999 33333 3 6 5 555555 00 00 666666666666 6 0 22222222 6 444 6 00 66 8 11 3 0 8888 6 22222 88 3 1 00 5555 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC--TGGTTATAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTA-----G-----AC-----C-----CGTGGAATAAC--GT-A---AAT-------------GA-TT---TAG------T-------A---T------------------C-GTAAACG-TCCGGAAATTTCCGGGCATCATCGA-T-ATTA---AAT---CCG-GGTAAGCGG-TTAAGTTTAAACTTAGATTTATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTCATA-TC-A--AAANAATTAAGG-TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TCTTTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTA----TTTTCA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTNTTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
Reference ( family-968 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC--TGGTTATAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTA-----G-----AC-----C-----CGTGGAATAAC--GT-A---AAT-------------GA-TT---TAG------T-------A---T------------------C-GTAAACG-TCCGGAAATTTCCGGGCATCATCGA-T-ATTA---AAT---CCG-GGTAAGCGG-TTAAGTTTAAACTTAGATTTATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTNATA-TC-A--AAANAATTAAGG-TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TCTNTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTA----TTTTCA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTATTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
gi|1 : TTCATATT-AAAGCGGCACAACCAGTA---TT--------T-----------TCAAATCAATA-AAA-ATA-TGATCATAATTGTAAGATT-TAG-TATGAATTGTGAT------TATCGGGATCATGTCTGGTGCAA--TACCGT----------TGT-TTATCAT---AAAAA--CACATATACTTAAACTCACTATTATTGCCGATAT-TTGA-ATTA-----A-----AC-----C------ATAGAATTAC--GT-A---AAT-------------GA-TT-------------------------------------------C-GTAAACG-TCCGGGTATTTCCGGGCATCATTGA-TGATTA---AAT---CCGTGATA-GCAG-TTATGTTTCAACTTAGATTTATACCGCCGATCTTGAT-AC-ATTC------CTTCATAGCATAGTGGT-TATAT-AT-AC-AAT-CTGGCAATCGGTCGATCCG--AGTTCGAA-TCGC-ATAACAAGAATTATATG-T-TTT------GTTCATTTCCC-TGGCAACACTA----TATTTT-CC---TACTGTGCTCCTTAAACGGCTACTAATA-TC-A--AAACAGTTAAGG-CTCCACCAAAATGAAA----AA------A-----C-G------TC-----------CATA-TGTGCATTTATA-----TATATGCACATATCTAGCGATATTTC----TAATAC-----------TGAA--GG----------AAGAC-------TGAATCAG-------CCGAATA----TA-TACTGTTGAATCGAAAATGT------T-A-CG--ACACTTTCCGT-CAGC--GAAGAAGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TGA--GGTT--TAA------------AACA-CGATTTT----TTTTCA-CGTTTAAGAAAGG---TATCG-AC--TGGTAT--AAATGCATCAAA-GGCCATGAG---AATTCATAAACAT-TTTGG----CATT-ATGAAAAA-GTTGTTTCTTTCTTTGTAAGAGAAA-TA----TCACCAGATACTGGCAATGCCGCTTTAA
gi|10 : aaaataagtagtataaaaagatcgaagacatcaaattatgcctgagtatagatatATA-AAA-AC--TGGT-ATGATTGTAATATT-AAG-CATAAATTATGACATAATGTATCTATATCATATATGGTGCCAAATACCGT----------TGT-GTGTCGT---CAAAAG-TATGTAT--TTAAACCTGCTATTATCACCGATATATTGACAT-------G-----AC-----A-----CGTGCAATAAC--GTCA---AATATTTTATCTATCAGATTT---TAA------T-------AAATC------------------C-GTAAACG-TTTGAAAATTTCCTGTCATCATCG----ATTACACGATAGGCTG-GGTAAACGG-TTAAGTTTAAAAATAGATT
gi|11 : tgatgaattttatccttttaatgcagtGCATAACCAGTA---TT--------TAATATGTCCTTTCAAAT-AATA-AAA-AAAAGAGGTATAATTCTAATATT-TAG-TATAAATTGTGAC------TACCTTGATCATGCCTGGTGCAAAATACCATTAAATACCTCTGT-ATATCGTCAAAAAAA--CATGTAT--TTAAATGCGCTTTTGTCACCAATAT-TTTA-ATTA-----G-----AC-----CTGATACGTGGAATGAC--AT-T---AAA-------------GA-TTTTGTAGTTA---T-------A---T------------------CTGCAAACA-TACAGAAATTTCTGGGCATCATCGATT-AT-------T---CCG-GGTAAGCGGTTTAAGTTT
gi|12 : T-T-GTT------GTTTATTGCCC-TAGCGACACTG----TTTTC----------------CCATAAATGTCGGCTCACA-TC-ATCAATAAATTAAG--TT---ACAGATTGGAA----AA------AATATCT-G------TC-----------CATA-TATGTATTTATA-----TATTTGCACATATCTAACGACCTTGC----TAATAC-----------TAAA--GG----------ATGGC-------GGAATTGA-------CAGAGTATAATTA-TACGATTGAATCGGAAGTTT------T---CGTTATAAc
gi|12 : TTTCGTTATAAAAGAAA-TA----TCTTCAAATACTGGTTATGTTGCTTTAAaagaaatatcttcaaatactggttatgttgctttaaatattaagctcgattcttt
gi|12 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagtTTAATATTTAAAGCAACATAACCAGTA---TT--------T-----------atattaagctcgattcttt
gi|13 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagttttcgttataaaagaaatatcttcAACTGG-------CC---TA----TG-CACAACACCATCAGAAATTT------T-G-TG--ATCATGTTCAT-CAGC--AAAGC----------TCA-TTTG-CATCT-C-ACA-A---------TT-----A-CTGATCC-ATAAGT------ATA--GATT--T-A------------AACAGCGATTTA------TTCA-CGTCTCAGTGAAA---TATCA-GC--TGTTAT--AAATATATGGAA-GGCAATCAA---AA-----AAACAT-TTTGC----CATTCATAAGCAA-GTTGTTTATTTCTTCATAAAAAAAA-gctcgattcttt
gi|14 : TATAAATGTAATATT-TAG-CATGAATTGTGAG------TATCTGGATCATAGCTTGTAAAAATTACTGT----------TGTGTTA-CAT---CAAAA-----------------TCACTATTATTGCTGATAT-TTCA-ATTA-----G-----ACCTAATC-----CTTGGAATAACCATT-AACTAAT-------------GG-TT---TAG------TCTATTCAA---T------------------C-TCAACTGTTTCTGAAATTTCTGGGCATCATTAA-T-gcttatgtggttctggct
gi|15 : taacaaaaccccgataTT-AAAGCGACATAACCAGTA---TG--------T-----------TTG---------------------TATAATTG--ATATAATAGATGTACATTG--AC------TATATGGATCATGTCTGCTGCAAATTATTAT----------TGT-TTCTTAG---AAAAAG-CAAGTAT--TTAAACTCGCTATAA-CGCCGCTAT-TTGA-ATTA-----G-----ACA----CAATA-CATGGAATAAC--GT-A---AAT-------------GA-TT---TAG------taa
gi|16 : taatgtaagtttacactgt-------TAA-CTTG-CATAT-T-A----------------------CTGATCA-GTAAATATAATATTA--ATTT--TAA------------AACA-C-------------TCA--ATGAAAGAGAGA---TATCG-AC--TGTTAT--AACC-CATGAAA-GGATATGAG---AATTAACAAAAATGTTTAT----TATTCATAAACAA-GTTATTTATTTATTTATGAAAATAA-CATAATTCTTTAG-TTCTGGTTATACga
gi|17 : taatctcacatca--AGTTCAAA-CCCA-GTGACAAGAATTATACTAT-TTT------GTTCATTACCA-TGGCAACACTG----TTTTTTTCC---TGCAGGGCTCCATAAACCGTTTCTCATA-TC-T--ATAAAATT-AGG-TTCCGAC-AAATAAAA----Aaat
gi|18 : TTCTCATA-TC-T--ATAAAATTA-GG-TTCCGAC-AAATAAAA----Atcgatgaacgacgatgaaaatt
gi|18 : tGAACGACGATGAA---AATTCACGAAAATGTTTGT----CATTCATAAATAT-ATTGTTCATTTCTTTATGAAATAAA-CA----TCTTTAGTTACTGGTTATGTTGCTTTAAtcgatgaacgacgatgaaaattcacgaaaatgtttgtcattcataaatatattgttcatttctttatgaaataaacatctttagttactggttatgttgctttaa
gi|2 : tttctcatatctataaaattaggttccgacaaataaaaatcgatCATAACCATTA---TTACTACACTT-----------TTGA--TAACA-ACG-AC--TGGT-ATAATTGTAATATT-TAC-CATGAATAATTAC------TAACTAGATCCTGTATGTTGCAAAATATCAC----------TGT-TTATCGT---CAGAGT-CATACAT--TTAAACTTGCTGATATTTT---TAT-TTGA-CCT------G-----AT-----C-----CATAGAATAAC--GT-C---ACT-------------GA-TT---TAG------T-------A---TATAATCGCCGTTATCAACC-GTAAATG-TTCGGAGATTTCAAGGCAGTTTCGG-T---TA---AAA---ACG-AGGAAACGA-TTAAGTTTAAACTTAGATTGATA----------TGGTGAT-ATTC------CTACATGTCGTAGTTGTCTATAG-ATTAT-GAT-CCAGCA-------GACCCA--GGTTCAAA-TCCC-GTGAAAAGTA--ATGTT-T-GTT------TTTAGTTTCCC-TAGCAACACTAGTTTTTTTTT-AT---TACAGACCTCCTTAAACGGTTTCTCATA-TCCA--AAATAAATA-TG-TTCCAACAAAAAGGAA----AA------A-----C-TAAATTTTC-----------CACA-TATACATTTATA-----TCTTTCCAAATAGCTAGTGACCATTC----TAAAAC-----------TGAA--AG----------ATAAC-------GAAATTTG-------CCGATTA----TA-TACGACTGCGCCGGAAGTTA------T-A-CG--ACAATTTGAAA-CAAC--GAAACA-C----------------CACAT-C-AAA-A---------TT-----A-CTGATTA-GTTAAT------TTA--GAAT--TAA------------AACA-CTATTTA----TTT--A-CGTTTAAGAGGGG---TATCGTGC--TGTCAT--AAAAGAAAC-AA-GGCCAGGAT---AATCCATAAATATG------------TCACAAACAA-GTTGTTTATTTCGTT
gi|20 : aATAACCAGCAATTTTGTCCA---T-----------TCGAATCAATATACA-AC--TGG-TATAATTGTAATAGT-TAG-TATAAATTGTGTC------TAAATGGATCAATTCTGGTACGAAATACCGT----------TGT-gccg
gi|21 : CATACCAAACGACCGTTG----TAATAC-----------CTAA--GG----------AT-AC-------CTAAT-GG-------AAGAGTA----TA-AACGATTGAATTGGGCATAT------T-A-CG--ATAATTTTGAA-CAGT--GATACAGC-------TTA-TATG-CATAT-T---------------TT-----A-CTagtatcctctatatgaa
gi|22 : gtgCCAATCTTGTT-AT-ATTCAATGGTTTATG-AGC----TGAT-CATG--AT--C-AA--CTGCCACTTGGGC--------------AA-TCCC-ATTATAAGAAATATACT-T-TTT------GTTCATTTCCC-ATGCAAAACTA----TTTTTT-
gi|23 : TA-TATGCATTTATACTGTATCCCTGCATATATCTAGCGACCGTTC----GGATAC-----------TGAA--G--------------------------AGTGG-------C-----------A-TACGATTGAACCGG-AATTT------T-
gi|24 : GAA-GGTGATGAA---AATTCATGAAAATGTTTGT----CATT
gi|28 : ttctcatatctataaaactaagttctgctaaaaaaaaaatcagtg-----------TGAA--GG----------ATGAC-------GGAATTGG-------CCGAGTA----TGTTACGATT
gi|3 : acaccaaT--------T-----------TCAAATCAATA-AAATAT--TTGTT-TATTTGTAATATT-TTG-TATAAATTGTGAA------TTTCTGGATCATGTTTGCTGCAAAATACAGC----------TGT-TCATCGT---TA--------------TTA---TCATT-CTAT----GATAT-TTGA-ATTA-----GTTCTAAC-----C-----TGTAGAATAAC--GT-ACTAAAT-------------GA-TT---AAGAAGTTAT-------A---T------------------CCGTAAACG-CCCAGAAATTTCTGGGCATTATCGA-T---TA---ATT---CGG-AGTAATTCG-AAAAGTTTAAACTTAGATTTATGCCGTTGATATTGAT-AA-ACTC------CTACATAGCATTGTGGT-TATAT-CT-GCAGATACTAG--CTCGGACGATCCG--AGTTCGAA-TCCC-ATAATAGG---TATAT
gi|3 : tagccagtttttatgttcATAAACGACTCCTTATA-T-----AAACAGTTCAGA-TTCCAACAAA-TGAAA----AATTATATG-----T-G------TC-----------TATA-TATGCATTTATT-----TCTTAGCAAATATATAGCGACTGCTC----TAATAA-----------TGAA--GG----------ATAAC-------GGAATTTG-------CCGAGTA----TA-AACGATTGAGTCGTAAAGTT------T-A-CG--ATAATTTCTAT-AAGT--GAAGCAAC-------TTA-TTTG-CACAT-T-AGA-T---------TT-----A-CTGATCA-GTTAAT------TT-----------A------------AACA-CAATTCA----TTACTATCATTTAAGATATG---CATAG-GC--AGTTAT--AAATGCATTCAA-GGTAATAAG---AATTCACAAAAATGTTT-----------ATAAA------------------------AGAAA-AA----TCTTCAGATACTGGTTATGCCGCTTTAaaacgactccttatataaacagttcagattccaacaaatgaaaaattatatgtgtctatatatgcatttatttcttagcaaatatatagcgactgctctaataatgaaggataacggaatttgccgagtataaacgattgagtcgtaaagtttacgataatttctataagtgaagcaacttatttgcacattagatttactgatcagttaatttaaacacaattcattactatcatttaagatatgcataggcagttataaatgcattcaaggtaataagaattcacaaaaatgtttataaaagaaaaatcttcagatactggttatgccgcttta
gi|4 : tagccagtttttatgttctttcaaatcaataaaatatttgtttatttgtaatattttgtataaattgtgaatttctggatcatgtttgctgcaaaatacagctgttcatcgttattatcattctatgatatttgaattagttctaacctgtagaataacgtactaaatgattaagaagttatatccgtaaacgcccagaaatttctgggcattatcgattaattcggagtaattcgaaaagtttaaacttagatttatgccgttgatattgataaactcctacatagcattgtggttatatctgcagatactagctcggacgatccgagttcgaatcccataataggtatTA-AAA-----TGGTT-TAATTGTAATATT-TAG-TATAAATTGAGAC------CATCTGGATCATGTCTGGTGCAAAATACCAT----------TGT-TTATTGT---AGAAAATCATGGAT--GAAAACTCACGATTATTGCCAATAT-TTGA-ATTAGACCTG-----AC-----C-----CGTGGAATAAC--AT-A---AAT-------------GA-TT---TAG------T-------A------------------------GTAAATG-TCCGAAAATTTATGGGCATCATCAA---GTT----AAT---CCG-GGTAAGCAG--TAAG-TTAA------------ACCGCCAATCTTTAT-AT-ATTC------CTATATAGCATGGTGGT-TATAT-CT-GC-GGA-TTGTCACTCTGTTGATCCG--AGTTCAAATTCTC-TTAACAGGAACTATATT-T-TTT------GTTCATT-----AAGCAACACTA-----TTTTT-CC---TATAGTGCTCCATAAATGGCTTTTAATA-TA-A--AAAATACTTAGG-TTCCAAAAAAATGAAG----AA------A-----
gi|4 : aagccttataacctgtaactatgtccttAAATTCCAT-TAGG--TCAGCAGT-------AAA-TTTG-CATAT-T-ACAGA---------TT-----A-CTGATCA-GTAAAT------TCA--GTTC--TAACT----------AA----------------TTCA-CATTTAAGAGAGA---TATTG-GCAATGC-ATCAAAATGCATTGAA-GGCCATGAA---AATTCATGAA-----------------CATAAACAA-Gaaaaaaattccattaggtcagcagtaaatttgcatattacagattactgatcagtaaattcagttctaactaattcacatttaagagagatattggcaatgcatcaaaatgcattgaaggccatgaaaattcatgaacataaacaaggtactggtcatgccgctata
gi|5 : aagccttataacctgtaactatgtcctttaaaatggtttaattgtaatatttagtataaattgagaccatctggatcatgtctggtgcaaaataccattgtttattgtagaaaatcatggatgaaaactcacgattattgccaatatttgaattagacctgacccgtggaataacataaatgatttagtagtaaatgtccgaaaatttatgggcatcatcaagttaatccgggtaagcagtaagttaaaccgccaatctttatatattcctatatagcatggtggttatatctgcggattgtcactctgttgatccgagttcaaattctcttaacaggaactatattttttgttcattaagcaacactatttttcctatagtgctccataaatggcttttaatataaaaaatacttaggttccaaaaaaatgaagaaaaaaaAT-ATTATTC------CCATGTAGCAAAATGGA-TATATCAG-GG-GAT--TGCCGCATGAGCGATCCGGTAGCT---A-CCACAGTGATAAATAATTTATT-T-TTTATTTTGGTTAATTTCAC-CAGCAACAC-------TTTTT-CCATTTACAGTTGTCCATATACGGCACTTGCTA-TC-A--AAAT-----AGG-TTAAAACAAAACAAAAC---AA------A-----A-G------AC-----------TA----------TCGTA-----TC--TGCATATATCTAGCAACCGTTCCCTGTTATCT-----------TTAAT-AG----------ATGATGCCATCAAGGATT---------CCTAATAC---CA-AAAGATTG---CGG-AATTTGAAGGGT-A-TGT-AAAATTGCAATGCAACAGGAAACAGTATGAATATCA-TCGGACATTT-T-ACG-ATAGTCTCCTTT-----AGCGGAACA-GCTAAT------TTACTGATTAGTAAATATAAATTTAAAATA-CGAGTTA------TTCA-CGTGTAAGAAAGG---TATCG-GC-------C--AAAT--ATC------CTA--AATTTAATTCACGAAGATGCTTGT----CATTCGTAAACAA-GTTGTGTGTTTCTTTAT--------------------AGATACTGGTTATGGCGCTTTAAgtactggtcatgccgctata
gi|6 : caggaatcatcggttaaacatgcaatataagatgtgtataaaagtttccatactgttATAT-AT-GT-GGA-TTGTCATTTGGGAGATCCA--AGTTTGAA-TCCC-GTGACAAGAATTTTACT-TATTT------GTCCATTTCCCAGGGCAACATTT----TTTTTC-CC---TTCAGTGATCCATGAATGTTTTCTCATATTC-A--TAAAATTTA--T-TTCCAACA-----AAA----AA------A-----T-G------TCTATAATATAAATATA-TATGCA-TTA-A-----TCTTTGTACATATCTAGCAACAATTC----CTATAC-----------AGAT--GG----------AAGAA-------AGAACTGG-------CTCAGTA----TA-AACGATTTAATCAGAAGTTT------T-A-TG--ATGATTTTTAT-CAGC--AAAGCAGC-------TAATTTTG-CATATATAAGA-A---------TTACTAAA-CTGATAA-GTAAAT------ATA--AATT--TAA------------AACA-TGATTTA------TTCA-TGGGCAAGAGAGGTAATATCG-AC--TGTTAT--AAATCTATGGAG-GGCGATGA----AATTTCCAAAAATGTTTGTCTGACATTCATAAATAT-GTTGTTCATTTCTTTATAAAATAAA-CA----TCTTTAGTTACTGGTTATGCCGCtg
gi|7 : TA----TGTTTT-CC---TA----GCAACATTAACGGCTTCTGATA-TT-A------------GA-T-----CAAAATGAAA----GT------T-----C-T------TCTT---------CATA-TATGCATTTATA-----TCTTTCGACATATTTAGTGAGCGTTC----TAATAC-----------TGAA--AT----------ATGAC-------TGAATTGA-------CTGAATA----TA-AATGATTGAATCGGACATTT------C-AGTG--ATAATTTCAGT-TACC--GAAATAGC-------TAC-TTTG-CATGT-T-AGA-A---------TT-----A-GTAATCATGT---T------TTA--GATT--TTA------------AACA-CGAATTA----TTT--A-CTTTTAAATGACG---TATCA-GC--TGTTTT--TCATGTATCGAA-GACAATGAG---AATTCGCAAGATTGTTTGC----CATTCATAAACCA-TTTGTTTCTTTCTTTATGAAAGAAA-TA----TCT
gi|8 : AAA----AA------A-----T-G------TC-----------CATGGTATACATTTATA-----TATGTATACATATCTATTGACTGTTC----TGATACAGAAGGATGACTGAATTGGTTGAATATATACGAT-------TGAATCAGGAATAAGCCGAGAA----TA-TAGGATTGAAACGTAATTTT------TTA-AG--ATAATTTCTGT-CAGC--GAAGCAGC-------TAA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TTA--GATT--TAA------------AATA-CAGTTTACCGGTATTAA-CATTTAA-ACAGG---TTTCT-GT--CTTTATC-AAATGgatgtcgcttta
gi|8 : tAAATGTTTGT----CATTCATAAACA----CGCTTCTTTCTTTATAAAAGAGATTA----TGTTCCAATACTGGTTATGCCGATTTtttgtcattcataaacacgcttctttctttataaaagagattatgttccaatactggttatgccgatttc
gi|9 : taaaaaatgtccatggtatacatttatatatgtatacatatctattgactgttctgatacagaaggatgactgaattggttgaatatatacgattgaatcaggaataagccgagaatataggattgaaacgtaattttttaagataatttctgtcagcgaagcagctaatttgcatattagaattactgatcggtaaatttagatttaaaatacagtttaccggtattaacatttaaacaggtttctgtctttatcAATTAAAAATTCCAACAAAGTGAAATAAAAA------A-----TTG------TC-----------CATA-TATGCAATTATA-----TCTATGCACATATCAAGCGATCGTTC----TAATCA-----------TGAA--GG----------GTTTC-------TGAATTGG-------CCGAGTA----TA------------------------------------TAATTTCCAT-CAGC--GAAGCTGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAA--------TGA--GATT--TAA------------CGCA-CGATTTA----TT--CA-CGTTTAAGAGAGG---TATCG-AC--TGTTAT--AATTGCATCAAA-GGCCATGAG---AATTAACGAAAATGTTTGT----CATTCATAAACAATGTT-TTTCTTTATTTATGAAAGAAA-CA----TTTTCAGATACTTGTTATGCCGCTTTc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTATTGGCAAAATCAGCCAAATATTTGCCTTAAACCATTAATAACACACATATTTAATACAAGTACGTCAAAGACATGTACAAACATATTATATTATACACTTTATACAAATACAATTACAGAC
Unaligned ( gi|25 ): TTAGACCTGACATGTGAAAAAACATCAAAGGTTTAGTCTGTCAGATGTTGATATATCTGTAAATGTTTTAAAATTTCC
Unaligned ( gi|26 ): CCGAGTATGTGATAAGGTTTAAACTAAAAATTTATATGGTTGATAGCATAGTGGTCATATCTTTGGATTATAACTCT
Unaligned ( gi|27 ): AGCAAATCAGAATATCGCACTCTTTGTACATATATAGCAACCATTCTTTGTTACCTTTAATA
Unaligned ( gi|29 ): AAACAAGTAGTAAAAAGAAGTATAATTGTCCCGGGA
Alignments
lowQualScore : 1 111 55555555555555555555 22222 111111 1111111111 22222222222 3333333333333333333333333 11111 2222222222222 999999999999999999999999999999999999999 33333333333333333 11 111111 111111111 111111 11111 1111 4444444444444444444444444444444444 11111 11111111111 11111111111111111111111 1111111 11111111111111 1111111 1111111111111 111111 222222222222 22222222
lowQualScore : 1 3 111 33333333333333333333 777 5 00000 888 4 4 222222 9999999999 4 9999 55555555555 0 2 44 1 5 5 3333333333333333333333333 66 99999 7777777777777 5 9999 111111111111111111111111111111111111111 5 0 2 99999999999999999 6 00 111 3 2 1 6 6 999999 0 222 6 77 444444444 1 3 0 3 66 33 5 5 3 7 5 5 444444 3 777 9999 4 888 11 3 1 4 8888 222 11111 1 0000 2222222222222222222222222222222222 4 0 00000 2 7777 55555555555 77 44444444444444444444444 0 0000000 0 9999 77 1 2 11111111111111 1 3 55 0000000 2 3 3 3 3 3333333333333 88888 3 3 2 000000 55 55 333333333333 3 2 44444444 3 666 3 55 88 2 55 3 1 8888 1 77777 44 2 4 55 8888 2
lowQualScore : . . ... .................... ... . ..... ... . . ...... .......... . .... ........... . . .. . . . ......................... .. ..... ............. . .... ....................................... . . . ................. . .. ... . . . . . ...... . ... . .. ......... . . . . .. .. . . . . . . ...... . ... .... . ... .. . . . .... ... ..... . .... .................................. . . ..... . .... ........... .. ....................... . ....... . .... .. . . .............. . . .. ....... . . . . . ............. ..... . . . ...... .. .. ............ . . ........ . ... . .. .. . .. . . .... . ..... .. . . .. .... .
lowQualScore : 0 3 777 11111111111111111111 333 0 44444 666 4 4 888888 4444444444 4 8888 44444444444 1 2 55 4 0 0 9999999999999999999999999 99 88888 5555555555555 0 1111 333333333333333333333333333333333333333 7 4 7 77777777777777777 7 22 888 0 5 4 7 7 222222 7 888 7 11 000000000 0 0 4 0 99 66 0 0 6 6 0 0 444444 4 111 4444 4 888 66 2 6 0 1111 999 77777 4 4444 2222222222222222222222222222222222 0 9 00000 5 7777 88888888888 99 77777777777777777777777 2 0000000 2 6666 11 1 4 11111111111111 0 6 00 8888888 2 3 3 3 3 9999999999999 33333 3 6 5 555555 00 00 666666666666 6 0 22222222 6 444 6 00 66 8 11 3 0 8888 6 22222 88 3 1 00 5555 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC--TGGTTATAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTA-----G-----AC-----C-----CGTGGAATAAC--GT-A---AAT-------------GA-TT---TAG------T-------A---T------------------C-GTAAACG-TCCGGAAATTTCCGGGCATCATCGA-T-ATTA---AAT---CCG-GGTAAGCGG-TTAAGTTTAAACTTAGATTTATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTCATA-TC-A--AAANAATTAAGG-TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TCTTTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTA----TTTTCA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTNTTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
Reference ( family-968 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC--TGGTTATAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTA-----G-----AC-----C-----CGTGGAATAAC--GT-A---AAT-------------GA-TT---TAG------T-------A---T------------------C-GTAAACG-TCCGGAAATTTCCGGGCATCATCGA-T-ATTA---AAT---CCG-GGTAAGCGG-TTAAGTTTAAACTTAGATTTATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTCATA-TC-A--AAANAATTAAGG-TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TCTTTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTA----TTTTCA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTNTTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
gi|1 : TTCATATT-AAAGCGGCACAACCAGTA---TT--------T-----------TCAAATCAATA-AAA-ATA-TGATCATAATTGTAAGATT-TAG-TATGAATTGTGAT------TATCGGGATCATGTCTGGTGCAA--TACCGT----------TGT-TTATCAT---AAAAA--CACATATACTTAAACTCACTATTATTGCCGATAT-TTGA-ATTA-----A-----AC-----C------ATAGAATTAC--GT-A---AAT-------------GA-TT-------------------------------------------C-GTAAACG-TCCGGGTATTTCCGGGCATCATTGA-TGATTA---AAT---CCGTGATA-GCAG-TTATGTTTCAACTTAGATTTATACCGCCGATCTTGAT-AC-ATTC------CTTCATAGCATAGTGGT-TATAT-AT-AC-AAT-CTGGCAATCGGTCGATCCG--AGTTCGAA-TCGC-ATAACAAGAATTATATG-T-TTT------GTTCATTTCCC-TGGCAACACTA----TATTTT-CC---TACTGTGCTCCTTAAACGGCTACTAATA-TC-A--AAACAGTTAAGG-CTCCACCAAAATGAAA----AA------A-----C-G------TC-----------CATA-TGTGCATTTATA-----TATATGCACATATCTAGCGATATTTC----TAATAC-----------TGAA--GG----------AAGAC-------TGAATCAG-------CCGAATA----TA-TACTGTTGAATCGAAAATGT------T-A-CG--ACACTTTCCGT-CAGC--GAAGAAGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TGA--GGTT--TAA------------AACA-CGATTTT----TTTTCA-CGTTTAAGAAAGG---TATCG-AC--TGGTAT--AAATGCATCAAA-GGCCATGAG---AATTCATAAACAT-TTTGG----CATT-ATGAAAAA-GTTGTTTCTTTCTTTGTAAGAGAAA-TA----TCACCAGATACTGGCAATGCCGCTTTAA
gi|10 : aaaataagtagtataaaaagatcgaagacatcaaattatgcctgagtatagatatATA-AAA-AC--TGGT-ATGATTGTAATATT-AAG-CATAAATTATGACATAATGTATCTATATCATATATGGTGCCAAATACCGT----------TGT-GTGTCGT---CAAAAG-TATGTAT--TTAAACCTGCTATTATCACCGATATATTGACAT-------G-----AC-----A-----CGTGCAATAAC--GTCA---AATATTTTATCTATCAGATTT---TAA------T-------AAATC------------------C-GTAAACG-TTTGAAAATTTCCTGTCATCATCG----ATTACACGATAGGCTG-GGTAAACGG-TTAAGTTTAAAAATAGATT
gi|11 : tgatgaattttatccttttaatgcagtGCATAACCAGTA---TT--------TAATATGTCCTTTCAAAT-AATA-AAA-AAAAGAGGTATAATTCTAATATT-TAG-TATAAATTGTGAC------TACCTTGATCATGCCTGGTGCAAAATACCATTAAATACCTCTGT-ATATCGTCAAAAAAA--CATGTAT--TTAAATGCGCTTTTGTCACCAATAT-TTTA-ATTA-----G-----AC-----CTGATACGTGGAATGAC--AT-T---AAA-------------GA-TTTTGTAGTTA---T-------A---T------------------CTGCAAACA-TACAGAAATTTCTGGGCATCATCGATT-AT-------T---CCG-GGTAAGCGGTTTAAGTTT
gi|12 : T-T-GTT------GTTTATTGCCC-TAGCGACACTG----TTTTC----------------CCATAAATGTCGGCTCACA-TC-ATCAATAAATTAAG--TT---ACAGATTGGAA----AA------AATATCT-G------TC-----------CATA-TATGTATTTATA-----TATTTGCACATATCTAACGACCTTGC----TAATAC-----------TAAA--GG----------ATGGC-------GGAATTGA-------CAGAGTATAATTA-TACGATTGAATCGGAAGTTT------T---CGTTATAAc
gi|12 : TTTCGTTATAAAAGAAA-TA----TCTTCAAATACTGGTTATGTTGCTTTAAaagaaatatcttcaaatactggttatgttgctttaaatattaagctcgattcttt
gi|12 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagtTTAATATTTAAAGCAACATAACCAGTA---TT--------T-----------atattaagctcgattcttt
gi|13 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagttttcgttataaaagaaatatcttcAACTGG-------CC---TA----TG-CACAACACCATCAGAAATTT------T-G-TG--ATCATGTTCAT-CAGC--AAAGC----------TCA-TTTG-CATCT-C-ACA-A---------TT-----A-CTGATCC-ATAAGT------ATA--GATT--T-A------------AACAGCGATTTA------TTCA-CGTCTCAGTGAAA---TATCA-GC--TGTTAT--AAATATATGGAA-GGCAATCAA---AA-----AAACAT-TTTGC----CATTCATAAGCAA-GTTGTTTATTTCTTCATAAAAAAAA-gctcgattcttt
gi|14 : TATAAATGTAATATT-TAG-CATGAATTGTGAG------TATCTGGATCATAGCTTGTAAAAATTACTGT----------TGTGTTA-CAT---CAAAA-----------------TCACTATTATTGCTGATAT-TTCA-ATTA-----G-----ACCTAATC-----CTTGGAATAACCATT-AACTAAT-------------GG-TT---TAG------TCTATTCAA---T------------------C-TCAACTGTTTCTGAAATTTCTGGGCATCATTAA-T-gcttatgtggttctggct
gi|15 : taacaaaaccccgataTT-AAAGCGACATAACCAGTA---TG--------T-----------TTG---------------------TATAATTG--ATATAATAGATGTACATTG--AC------TATATGGATCATGTCTGCTGCAAATTATTAT----------TGT-TTCTTAG---AAAAAG-CAAGTAT--TTAAACTCGCTATAA-CGCCGCTAT-TTGA-ATTA-----G-----ACA----CAATA-CATGGAATAAC--GT-A---AAT-------------GA-TT---TAG------taa
gi|16 : taatgtaagtttacactgt-------TAA-CTTG-CATAT-T-A----------------------CTGATCA-GTAAATATAATATTA--ATTT--TAA------------AACA-C-------------TCA--ATGAAAGAGAGA---TATCG-AC--TGTTAT--AACC-CATGAAA-GGATATGAG---AATTAACAAAAATGTTTAT----TATTCATAAACAA-GTTATTTATTTATTTATGAAAATAA-CATAATTCTTTAG-TTCTGGTTATACga
gi|17 : taatctcacatca--AGTTCAAA-CCCA-GTGACAAGAATTATACTAT-TTT------GTTCATTACCA-TGGCAACACTG----TTTTTTTCC---TGCAGGGCTCCATAAACCGTTTCTCATA-TC-T--ATAAAATT-AGG-TTCCGAC-AAATAAAA----Aaat
gi|18 : TTCTCATA-TC-T--ATAAAATT-AGG-TTCCGAC-AAATAAAA----Atcgatgaacgacgatgaaaatt
gi|18 : tGAACGACGATGAA---AATTCACGAAAATGTTTGT----CATTCATAAATAT-ATTGTTCATTTCTTTATGAAATAAA-CA----TCTTTAGTTACTGGTTATGTTGCTTTAAtcgatgaacgacgatgaaaattcacgaaaatgtttgtcattcataaatatattgttcatttctttatgaaataaacatctttagttactggttatgttgctttaa
gi|2 : tttctcatatctataaaattaggttccgacaaataaaaatcgatCATAACCATTA---TTACTACACTT-----------TTGA--TAACA-ACG-AC--TGGT-ATAATTGTAATATT-TAC-CATGAATAATTAC------TAACTAGATCCTGTATGTTGCAAAATATCAC----------TGT-TTATCGT---CAGAGT-CATACAT--TTAAACTTGCTGATATTTT---TAT-TTGA-CCT------G-----AT-----C-----CATAGAATAAC--GT-C---ACT-------------GA-TT---TAG------T-------A---TATAATCGCCGTTATCAACC-GTAAATG-TTCGGAGATTTCAAGGCAGTTTCGG-T---TA---AAA---ACG-AGGAAACGA-TTAAGTTTAAACTTAGATTGATA----------TGGTGAT-ATTC------CTACATGTCGTAGTTGTCTATAG-ATTAT-GAT-CCAGCA-------GACCCA--GGTTCAAA-TCCC-GTGAAAAGTA--ATGTT-T-GTT------TTTAGTTTCCC-TAGCAACACTAGTTTTTTTTT-AT---TACAGACCTCCTTAAACGGTTTCTCATA-TCCA--AAATAAATA-TG-TTCCAACAAAAAGGAA----AA------A-----C-TAAATTTTC-----------CACA-TATACATTTATA-----TCTTTCCAAATAGCTAGTGACCATTC----TAAAAC-----------TGAA--AG----------ATAAC-------GAAATTTG-------CCGATTA----TA-TACGACTGCGCCGGAAGTTA------T-A-CG--ACAATTTGAAA-CAAC--GAAACA-C----------------CACAT-C-AAA-A---------TT-----A-CTGATTA-GTTAAT------TTA--GAAT--TAA------------AACA-CTATTTA----TTT--A-CGTTTAAGAGGGG---TATCGTGC--TGTCAT--AAAAGAAAC-AA-GGCCAGGAT---AATCCATAAATATG------------TCACAAACAA-GTTGTTTATTTCGTT
gi|20 : aATAACCAGCAATTTTGTCCA---T-----------TCGAATCAATATACA-AC--TGG-TATAATTGTAATAGT-TAG-TATAAATTGTGTC------TAAATGGATCAATTCTGGTACGAAATACCGT----------TGT-gccg
gi|21 : CATACCAAACGACCGTTG----TAATAC-----------CTAA--GG----------AT-AC-------CTAAT-GG-------AAGAGTA----TA-AACGATTGAATTGGGCATAT------T-A-CG--ATAATTTTGAA-CAGT--GATACAGC-------TTA-TATG-CATAT-T---------------TT-----A-CTagtatcctctatatgaa
gi|22 : gtgCCAATCTTGTT-AT-ATTCAATGGTTTATG-AGC----TGAT-CATG--AT--C-AA--CTGCCACTTGGGC--------------AA-TCCC-ATTATAAGAAATATACT-T-TTT------GTTCATTTCCC-ATGCAAAACTA----TTTTTT-
gi|23 : TA-TATGCATTTATACTGTATCCCTGCATATATCTAGCGACCGTTC----GGATAC-----------TGAA--G--------------------------AGTGG-------C-----------A-TACGATTGAACCGG-AATTT------T-
gi|24 : GAA-GGTGATGAA---AATTCATGAAAATGTTTGT----CATT
gi|28 : ttctcatatctataaaactaagttctgctaaaaaaaaaatcagtg-----------TGAA--GG----------ATGAC-------GGAATTGG-------CCGAGTA----TGTTACGATT
gi|3 : acaccaaT--------T-----------TCAAATCAATA-AAATAT--TTGTT-TATTTGTAATATT-TTG-TATAAATTGTGAA------TTTCTGGATCATGTTTGCTGCAAAATACAGC----------TGT-TCATCGT---TA--------------TTA---TCATT-CTAT----GATAT-TTGA-ATTA-----GTTCTAAC-----C-----TGTAGAATAAC--GT-ACTAAAT-------------GA-TT---AAGAAGTTAT-------A---T------------------CCGTAAACG-CCCAGAAATTTCTGGGCATTATCGA-T---TA---ATT---CGG-AGTAATTCG-AAAAGTTTAAACTTAGATTTATGCCGTTGATATTGAT-AA-ACTC------CTACATAGCATTGTGGT-TATAT-CT-GCAGATACTAG--CTCGGACGATCCG--AGTTCGAA-TCCC-ATAATAGG---TATAT
gi|3 : tagccagtttttatgttcATAAACGACTCCTTATA-T-----AAACAGTTCAGA-TTCCAACAAA-TGAAA----AATTATATG-----T-G------TC-----------TATA-TATGCATTTATT-----TCTTAGCAAATATATAGCGACTGCTC----TAATAA-----------TGAA--GG----------ATAAC-------GGAATTTG-------CCGAGTA----TA-AACGATTGAGTCGTAAAGTT------T-A-CG--ATAATTTCTAT-AAGT--GAAGCAAC-------TTA-TTTG-CACAT-T-AGA-T---------TT-----A-CTGATCA-GTTAAT------TT-----------A------------AACA-CAATTCA----TTACTATCATTTAAGATATG---CATAG-GC--AGTTAT--AAATGCATTCAA-GGTAATAAG---AATTCACAAAAATGTTT-----------ATAAA------------------------AGAAA-AA----TCTTCAGATACTGGTTATGCCGCTTTAaaacgactccttatataaacagttcagattccaacaaatgaaaaattatatgtgtctatatatgcatttatttcttagcaaatatatagcgactgctctaataatgaaggataacggaatttgccgagtataaacgattgagtcgtaaagtttacgataatttctataagtgaagcaacttatttgcacattagatttactgatcagttaatttaaacacaattcattactatcatttaagatatgcataggcagttataaatgcattcaaggtaataagaattcacaaaaatgtttataaaagaaaaatcttcagatactggttatgccgcttta
gi|4 : tagccagtttttatgttctttcaaatcaataaaatatttgtttatttgtaatattttgtataaattgtgaatttctggatcatgtttgctgcaaaatacagctgttcatcgttattatcattctatgatatttgaattagttctaacctgtagaataacgtactaaatgattaagaagttatatccgtaaacgcccagaaatttctgggcattatcgattaattcggagtaattcgaaaagtttaaacttagatttatgccgttgatattgataaactcctacatagcattgtggttatatctgcagatactagctcggacgatccgagttcgaatcccataataggtatTA-AAA-----TGGTT-TAATTGTAATATT-TAG-TATAAATTGAGAC------CATCTGGATCATGTCTGGTGCAAAATACCAT----------TGT-TTATTGT---AGAAAATCATGGAT--GAAAACTCACGATTATTGCCAATAT-TTGA-ATTAGACCTG-----AC-----C-----CGTGGAATAAC--AT-A---AAT-------------GA-TT---TAG------T-------A------------------------GTAAATG-TCCGAAAATTTATGGGCATCATCAA---GTT----AAT---CCG-GGTAAGCAG--TAAG-TTAA------------ACCGCCAATCTTTAT-AT-ATTC------CTATATAGCATGGTGGT-TATAT-CT-GC-GGA-TTGTCACTCTGTTGATCCG--AGTTCAAATTCTC-TTAACAGGAACTATATT-T-TTT------GTTCATT-----AAGCAACACTA-----TTTTT-CC---TATAGTGCTCCATAAATGGCTTTTAATA-TA-A--AAAATACTTAGG-TTCCAAAAAAATGAAG----AA------A-----
gi|4 : aagccttataacctgtaactatgtccttAAATTCCAT-TAGG--TCAGCAGT-------AAA-TTTG-CATAT-T-ACAGA---------TT-----A-CTGATCA-GTAAAT------TCA--GTTC--TAACT----------AA----------------TTCA-CATTTAAGAGAGA---TATTG-GCAATGC-ATCAAAATGCATTGAA-GGCCATGAA---AATTCATGAA-----------------CATAAACAA-Gaaaaaaattccattaggtcagcagtaaatttgcatattacagattactgatcagtaaattcagttctaactaattcacatttaagagagatattggcaatgcatcaaaatgcattgaaggccatgaaaattcatgaacataaacaaggtactggtcatgccgctata
gi|5 : aagccttataacctgtaactatgtcctttaaaatggtttaattgtaatatttagtataaattgagaccatctggatcatgtctggtgcaaaataccattgtttattgtagaaaatcatggatgaaaactcacgattattgccaatatttgaattagacctgacccgtggaataacataaatgatttagtagtaaatgtccgaaaatttatgggcatcatcaagttaatccgggtaagcagtaagttaaaccgccaatctttatatattcctatatagcatggtggttatatctgcggattgtcactctgttgatccgagttcaaattctcttaacaggaactatattttttgttcattaagcaacactatttttcctatagtgctccataaatggcttttaatataaaaaatacttaggttccaaaaaaatgaagaaaaaaaAT-ATTATTC------CCATGTAGCAAAATGGA-TATATCAG-GG-GAT--TGCCGCATGAGCGATCCGGTAGCT---A-CCACAGTGATAAATAATTTATT-T-TTTATTTTGGTTAATTTCAC-CAGCAACAC-------TTTTT-CCATTTACAGTTGTCCATATACGGCACTTGCTA-TC-A--AAAT-----AGG-TTAAAACAAAACAAAAC---AA------A-----A-G------AC-----------TA----------TCGTA-----TC--TGCATATATCTAGCAACCGTTCCCTGTTATCT-----------TTAAT-AG----------ATGATGCCATCAAGGATT---------CCTAATAC---CA-AAAGATTG---CGG-AATTTGAAGGGT-A-TGT-AAAATTGCAATGCAACAGGAAACAGTATGAATATCA-TCGGACATTT-T-ACG-ATAGTCTCCTTT-----AGCGGAACA-GCTAAT------TTACTGATTAGTAAATATAAATTTAAAATA-CGAGTTA------TTCA-CGTGTAAGAAAGG---TATCG-GC-------C--AAAT--ATC------CTA--AATTTAATTCACGAAGATGCTTGT----CATTCGTAAACAA-GTTGTGTGTTTCTTTAT--------------------AGATACTGGTTATGGCGCTTTAAgtactggtcatgccgctata
gi|6 : caggaatcatcggttaaacatgcaatataagatgtgtataaaagtttccatactgttATAT-AT-GT-GGA-TTGTCATTTGGGAGATCCA--AGTTTGAA-TCCC-GTGACAAGAATTTTACT-TATTT------GTCCATTTCCCAGGGCAACATTT----TTTTTC-CC---TTCAGTGATCCATGAATGTTTTCTCATATTC-A--TAAAATTTA--T-TTCCAACA-----AAA----AA------A-----T-G------TCTATAATATAAATATA-TATGCA-TTA-A-----TCTTTGTACATATCTAGCAACAATTC----CTATAC-----------AGAT--GG----------AAGAA-------AGAACTGG-------CTCAGTA----TA-AACGATTTAATCAGAAGTTT------T-A-TG--ATGATTTTTAT-CAGC--AAAGCAGC-------TAATTTTG-CATATATAAGA-A---------TTACTAAA-CTGATAA-GTAAAT------ATA--AATT--TAA------------AACA-TGATTTA------TTCA-TGGGCAAGAGAGGTAATATCG-AC--TGTTAT--AAATCTATGGAG-GGCGATGA----AATTTCCAAAAATGTTTGTCTGACATTCATAAATAT-GTTGTTCATTTCTTTATAAAATAAA-CA----TCTTTAGTTACTGGTTATGCCGCtg
gi|7 : TA----TGTTTT-CC---TA----GCAACATTAACGGCTTCTGATA-TT-A------------GA-T-----CAAAATGAAA----GT------T-----C-T------TCTT---------CATA-TATGCATTTATA-----TCTTTCGACATATTTAGTGAGCGTTC----TAATAC-----------TGAA--AT----------ATGAC-------TGAATTGA-------CTGAATA----TA-AATGATTGAATCGGACATTT------C-AGTG--ATAATTTCAGT-TACC--GAAATAGC-------TAC-TTTG-CATGT-T-AGA-A---------TT-----A-GTAATCATGT---T------TTA--GATT--TTA------------AACA-CGAATTA----TTT--A-CTTTTAAATGACG---TATCA-GC--TGTTTT--TCATGTATCGAA-GACAATGAG---AATTCGCAAGATTGTTTGC----CATTCATAAACCA-TTTGTTTCTTTCTTTATGAAAGAAA-TA----TCT
gi|8 : AAA----AA------A-----T-G------TC-----------CATGGTATACATTTATA-----TATGTATACATATCTATTGACTGTTC----TGATACAGAAGGATGACTGAATTGGTTGAATATATACGAT-------TGAATCAGGAATAAGCCGAGAA----TA-TAGGATTGAAACGTAATTTT------TTA-AG--ATAATTTCTGT-CAGC--GAAGCAGC-------TAA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TTA--GATT--TAA------------AATA-CAGTTTACCGGTATTAA-CATTTAA-ACAGG---TTTCT-GT--CTTTATC-AAATGgatgtcgcttta
gi|8 : tAAATGTTTGT----CATTCATAAACA----CGCTTCTTTCTTTATAAAAGAGATTA----TGTTCCAATACTGGTTATGCCGATTTtttgtcattcataaacacgcttctttctttataaaagagattatgttccaatactggttatgccgatttc
gi|9 : taaaaaatgtccatggtatacatttatatatgtatacatatctattgactgttctgatacagaaggatgactgaattggttgaatatatacgattgaatcaggaataagccgagaatataggattgaaacgtaattttttaagataatttctgtcagcgaagcagctaatttgcatattagaattactgatcggtaaatttagatttaaaatacagtttaccggtattaacatttaaacaggtttctgtctttatcAATTAAAAATTCCAACAAAGTGAAATAAAAA------A-----TTG------TC-----------CATA-TATGCAATTATA-----TCTATGCACATATCAAGCGATCGTTC----TAATCA-----------TGAA--GG----------GTTTC-------TGAATTGG-------CCGAGTA----TA------------------------------------TAATTTCCAT-CAGC--GAAGCTGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAA--------TGA--GATT--TAA------------CGCA-CGATTTA----TT--CA-CGTTTAAGAGAGG---TATCG-AC--TGTTAT--AATTGCATCAAA-GGCCATGAG---AATTAACGAAAATGTTTGT----CATTCATAAACAATGTT-TTTCTTTATTTATGAAAGAAA-CA----TTTTCAGATACTTGTTATGCCGCTTTc
blockSeqs : A T ATT TAATATGTCCTT ATC T AAAA GTA A A ATAATG TAAATACCTC G CAAA ATCATGGAT A CA C A C AGACCTGATA CA AACT ATTTTATCTATCA T TTGT TATATAATCGCCGTTATCAACC T C ATTACACGATAGG . TT AAA G C A G T AATGGT GTA C TC GCAGATAC G C G GT CA T A A T A A ATTTTG G AGG GTTT T ATT CA G C T ATC AAA AAAAA T TAAA ATGTCTATAATATAAA G CTGTA T CCTG AGAAGGATGAC TT TTGAATATATACGATT GAATAAG TAAT TT A A GAAGGGTATGT C G AG ATGAATA C T A A A CGATAGTCTCCT ACTAA G T A ATAATA CT AG ATATAAATTTAA G G CCGGTATT T TAA T AA CA A GG C A ATTT C TCTGA AT A A TT TAAT A
blockSeqs : . . ACTACACTT ATC . TAT TA . . . . . C GTATGTAT T CA C . . AGACCTAATC . ACTA . . T TCTATTCAATC . T GTTAAAA . T ACT T C G . . . ATT . G TATGATC C C A . CA . . T A . . . A TA . . . CA A C . CA AAA CAGA A C ACTAAATTTTC . . T . . T ATGATGCCATCAA . C T C A TCGTT A . . . A . . . . CAGA . . . A . . . CT . T TTAC . . . . C G GA . T A A C A A A T . T
blockSeqs : . GTCCAT AT . AC TA . . . . . C GCAAGTAT A TG T . . AGACACAATA . CA . . T AAGTTATATCC . T ATTAATT . T ACT . . A . . . ATG . T GCGGAT G C T . CG . . A C . . . T TG . . . TA T C . T AAA TAGG A . TTATATGTGTC . . C . . . ATGGCG . . C C A CAGTG G . . . T . . . . CAA . . . T . . . . . A TTT . . . . . G TC . G G A T A A G C . A
blockSeqs : . T T . AC TA . . . . . A TCATACAT A CG C . . AGTTCTAACC . T . . T TTATATCT . A AGTTAAT . A . . . . . AAA . T GTGGAT T C G . CA . . A A . . . T TA . . . CA T C . T TAA AAG A . AATATCTGTC . . T . . . ATAACG . . T A G TTAAG T . . . T . . . . AAA . . . T . . . . . G TTT . . . . . G TG . C A T T T A G C . A
blockSeqs : . T . . AC TA . . . . . C CATGTAT G TT C . . AGACCTGACC . A . . T TAAATCC . T ATTATT . . . . . . . T GGGAT C T G . TG . . T T . . . T AT . . . CA T T . A CAG AGG A . TCTTCTT . . T . . . ATGACG . . A A A TGTG C . . . A . . . . GAT . . . A . . . . . G TT . . . . . C GG . G T A T A G A A . T
blockSeqs : T . . TT . . . . . T . A TG . . . GACA . C . . A TA . T . CAAC T . . . . . . A . . . . T AA . . . . . A . A ATA AGG A . ATTGTC . . T . . . ATAACG . . T A A TACG A . . . C . . . . GAA . . . T . . . . . G TT . . . . . G CG . A A A T A A G C . A
blockSeqs : . . TT . . . . . A . . . . . . GATC . A . . T . . . . . . . . . . CA . . . . . G . A AAT ATG A . AAGAC . . G . . . AAGAAA . . A A A TACG T . . . A . . . . GAA . . . A . . . . . A TT . . . . . G CA . C G G C A C A T . A
blockSeqs : . . . . . . . C . A T AGG G . ATGTC . . A . . . ATGACT . . A A A TACG A . . . A . . . . GAA . . . A . . . . . G TT . . . . . G C . T A A T T C G C . .
blockSeqs : G . . . AT . . . . . . . . GTTTCT . . A A . TATG T . . . A . . . . GAA . . . A . . . . . . TT . . . . . . C . G G A T A C . . .
blockSeqs : GA . . . . . ATACC . . A . . . C . . . T . . . . . . . . . . . . . . . T . . . . . . . A G A . . . .
blockSeqs : . . . . . . T . . . . . . . . . . . . C . A . .
blockSeqs : . . . . .
blockSeqCons : AC*** TA* CATGTAT**** AGACCTAATC*************** T*** TATAATCC******************************* ATTAAAT********** AGG** TT******
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC--TGGTTATAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTA-----G-----AC-----C-----CGTGGAATAAC--GT-A---AAT-------------GA-TT---TAG------T-------A---T------------------C-GTAAACG-TCCGGAAATTTCCGGGCATCATCGA-T-ATTA---AAT---CCG-GGTAAGCGG-TTAAGTTTAAACTTAGATTTATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTCATA-TC-A--AAANAATTAAGG-TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TCTTTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTA----TTTTCA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTNTTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAAAC---TGGTA-TAATTGTAATATT-TAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAACATGTAT----TTAAACTCGCTATTATCGCCGATAT-TTGA-ATTAGACCTAATC---------------CGTGGAATAAC--GT-A---AAT-------------GA-TTT---AGTATAATCC-------------------------------GTAAACG-TCCGGAAATTTCCGGGCATCATCGATTAAAT----------CCG-GGTAAGCGG-TTAAGTTTAAACTTAGATTTATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-AT-GC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTCATA-TC-A--AAANAATTAGG--TTCCAACAAAATGAAA----AA------A-----C-G------TC-----------CATA-TATGCATTTATA-----TCTTTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGATTTATT------CA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTNTTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTATTGGCAAAATCAGCCAAATATTTGCCTTAAACCATTAATAACACACATATTTAATACAAGTACGTCAAAGACATGTACAAACATATTATATTATACACTTTATACAAATACAATTACAGAC
Unaligned ( gi|25 ): TTAGACCTGACATGTGAAAAAACATCAAAGGTTTAGTCTGTCAGATGTTGATATATCTGTAAATGTTTTAAAATTTCC
Unaligned ( gi|26 ): CCGAGTATGTGATAAGGTTTAAACTAAAAATTTATATGGTTGATAGCATAGTGGTCATATCTTTGGATTATAACTCT
Unaligned ( gi|27 ): AGCAAATCAGAATATCGCACTCTTTGTACATATATAGCAACCATTCTTTGTTACCTTTAATA
Unaligned ( gi|29 ): AAACAAGTAGTAAAAAGAAGTATAATTGTCCCGGGA
Alignments
lowQualScore : 1 111 55555555555555555555 11111111 111111 1111111111 22222222222 11111 2222222222222 77777777777777777777777777777 111111111111 11 111 111111 111111 1111111111111 111111 22222 1111 444444444444444444444444444444444 11111 11111111111 11111111111111111111111 1111111 11111111111111 1111111 1111111111111 111111 111111111111 111111
lowQualScore : 1 3 111 33333333333333333333 9 5 22222222 4 4 222222 9999999999 4 9999 55555555555 0 6 555 2 0 1 2 66 99999 7777777777777 5 0 33333333333333333333333333333 5 5 0 1 888 333333333333 888 1 999 00 3 111 000000 2 6 6 999999 0 222 6 3333333333333 1 3 0 3 66 33 5 5 3 7 5 5 444444 3 777 9999 4 888 11 3 1 11111 1 6 0 7 55 1 0000 222222222222222222222222222222222 4 0 00000 2 7777 55555555555 77 44444444444444444444444 0 0000000 0 9999 77 1 2 11111111111111 1 3 55 0000000 2 3 3 3 3 3333333333333 88888 3 3 2 000000 55 55 888888888888 3 2 55 000000 55 3 666 3 55 88 2 55 3 1 8888 1 77777 44 2 4 55 8888 2
lowQualScore : . . ... .................... . . ........ . . ...... .......... . .... ........... . . ... . . . . .. ..... ............. . . ............................. . . . . ... ............ ... . ... .. . ... ...... . . . ...... . ... . ............. . . . . .. .. . . . . . . ...... . ... .... . ... .. . . ..... . . . . .. . .... ................................. . . ..... . .... ........... .. ....................... . ....... . .... .. . . .............. . . .. ....... . . . . . ............. ..... . . . ...... .. .. ............ . . .. ...... .. . ... . .. .. . .. . . .... . ..... .. . . .. .... .
lowQualScore : 0 3 777 11111111111111111111 3 0 44444444 4 4 888888 4444444444 4 8888 44444444444 1 5 888 5 4 5 5 99 88888 5555555555555 0 4 11111111111111111111111111111 7 7 4 1 888 000000000000 333 7 111 00 2 666 333333 5 7 7 222222 7 888 7 4444444444444 0 0 4 0 99 66 0 0 6 6 0 0 444444 4 111 4444 4 888 66 2 6 00000 2 3 3 3 00 4 4444 222222222222222222222222222222222 0 9 00000 5 7777 88888888888 99 77777777777777777777777 2 0000000 2 6666 11 1 4 11111111111111 0 6 00 8888888 2 3 3 3 3 9999999999999 33333 3 6 5 555555 00 00 666666666666 6 0 00 555555 00 6 444 6 00 66 8 11 3 0 8888 6 22222 88 3 1 00 5555 2
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC-T---GGT-ATAATTGTAATATTTAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATATTTGAATTAGACCTGACCCGTGGAATAAC--GT-A---AAT-------------GA-TTTAG----TA--T--A-AT------------CCGTAAAC-G-TCCGGAAATTTCCGGGCATCATCGAT---TA---AA--T---CCG-G-GTAAGCGG-TTAAGTTTAAACTTAGATTT--ATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-A-TGC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTCATAT-CA--AAANAATT-AGG--TTCCAACAAAATGAAA----AA------A-----C------GTC-----------CATA-TATGCATTTATA-----TCTTTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGA--TT------TATT--CA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTNTTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
Reference ( family-968 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTNATATT-AAAGCGGCATAACCAGTA---TT--------T-----------TCGAATCAATA-AAA-AC-T---GGT-ATAATTGTAATATTTAG-TATAAATTGTGAC------TATCTGGATCATGTCTGGTGCAAAATACCGT----------TGT-TTATCGT---NAAAA--CATGTAT--TTAAACTCGCTATTATCGCCGATATTTGAATTAGACCTAATCCGTGGAATAAC--GT-A---AAT-------------GA-TTTAG----TA--T--A-AT------------CCGTAAAC-G-TCCGGAAATTTCCGGGCATCATCGAT---TA---AA--T---CCG-G-GTAAGCGG-TTAAGTTTAAACTTAGATTT--ATACCGCCGATCTTGAT-AT-ATTC------CTACGTAGCATAGTGGT-TATAT-A-TGC-GAT-CTGNCACTCGGGCGATCCG--AGTTCGAA-TCCC-GTGACAAGAANTATATT-T-TTT------GTTCATTTCCC-NGGCAACACTA----TTTTTT-CC---TACAGTGCTCCATAAACGGCTTCTCATAT-CA--AAANAATT-AGG--TTCCAACAAAATGAAA----AA------A-----C------GTC-----------CATA-TATGCATTTATA-----TCTTTGCACATATCTAGCGACCGTTC----TAATAC-----------TGAA--GG----------ATGAC-------NGAATTGG-------CCGAGTA----TA-NACGATTGAATCGGAAATTT------T-A-CG--ATAATTTCNAT-CAGC--GAAGCAGC-------TNA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAAAT------TTA--GATT--TAA------------AACA-CGA--TT------TATT--CA-CGTTTAAGAGAGG---TATCG-GC--TGTTAT--AAATGCATCGAA-GGCNATGAG---AATTCACGAAAATGTTTGT----CATTCATAAACAA-GTTGTTTNTTTCTTTATGAAAGAAA-CA----TCTTCAGATACTGGTTATGCCGCTTTAA
gi|1 : TTCATATT-AAAGCGGCACAACCAGTA---TT--------T-----------TCAAATCAATA-AAA-ATAT---GATCATAATTGTAAGATTTAG-TATGAATTGTGAT------TATCGGGATCATGTCTGGTGCAA--TACCGT----------TGT-TTATCAT---AAAAA--CACATATACTTAAACTCACTATTATTGCCGATATTTGAATTAAACC------ATAGAATTAC--GT-A---AAT-------------GA-TT-------------------------------CGTAAAC-G-TCCGGGTATTTCCGGGCATCATTGATGATTA---AA--T---CCGTG-AT-AGCAG-TTATGTTTCAACTTAGATTT--ATACCGCCGATCTTGAT-AC-ATTC------CTTCATAGCATAGTGGT-TATAT-A-TAC-AAT-CTGGCAATCGGTCGATCCG--AGTTCGAA-TCGC-ATAACAAGAATTATATG-T-TTT------GTTCATTTCCC-TGGCAACACTA----TATTTT-CC---TACTGTGCTCCTTAAACGGCTACTAATAT-CA--AAACAGTTAAGG--CTCCACCAAAATGAAA----AA------A-----C------GTC-----------CATA-TGTGCATTTATA-----TATATGCACATATCTAGCGATATTTC----TAATAC-----------TGAA--GG----------AAGAC-------TGAATCAG-------CCGAATA----TA-TACTGTTGAATCGAAAATGT------T-A-CG--ACACTTTCCGT-CAGC--GAAGAAGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TGA--GGTT--TAA------------AACA-CGATTTT------TTTT--CA-CGTTTAAGAAAGG---TATCG-AC--TGGTAT--AAATGCATCAAA-GGCCATGAG---AATTCATAAACAT-TTTGG----CATT-ATGAAAAA-GTTGTTTCTTTCTTTGTAAGAGAAA-TA----TCACCAGATACTGGCAATGCCGCTTTAA
gi|10 : aaaataagtagtataaaaagatcgaagacatcaaattatgcctgagtatagatatATA-AAA-AC-T---GGT-ATGATTGTAATATTAAG-CATAAATTATGACATAATGTATCTATATCATATATGGTGCCAAATACCGT----------TGT-GTGTCGT---CAAAAG-TATGTAT--TTAAACCTGCTATTATCACCGATAT----ATT-GACATGACACGTGCAATAAC--GTCA---AATATTTTATCTATCAGATTTTAA----TA-----A-AT------------CCGTAAAC-G-TTTGAAAATTTCCTGTCATCATCGAT---TACACGA--TAGGCTG-G-GTAAACGG-TTAAGTTTAAAAATAGATT
gi|11 : tgatgaattttatccttttaatgcagtGCATAACCAGTA---TT--------TAATATGTCCTTTCAAAT-AATA-AAA-AA-AAGAGGT-ATAATTCTAATATTTAG-TATAAATTGTGAC------TACCTTGATCATGCCTGGTGCAAAATACCATTAAATACCTCTGT-ATATCGTCAAAAAAA--CATGTAT--TTAAATGCGCTTTTGTCACCAATATTTTAATTAGACCTGATACGTGGAATGAC--AT-T---AAA-------------GA-TTTTG----TAGTT--ATAT------------CTGCAAAC-A-TACAGAAATTTCTGGGCATCATCGAT---T----AT--T---CCG-G-GTAAGCGGTTTAAGTTT
gi|12 : T-T-GTT------GTTTATTGCCC-TAGCGACACTG----TTTTC----------------CCATAAATGTCGGCTCACAT-CATCAATAAATT-AAG--TT---ACAGATTGGAA----AA------AATATCT------GTC-----------CATA-TATGTATTTATA-----TATTTGCACATATCTAACGACCTTGC----TAATAC-----------TAAA--GG----------ATGGC-------GGAATTGA-------CAGAGTATAATTA-TACGATTGAATCGGAAGTTT------T---CGTTATAAc
gi|12 : TTTCGTTATAAAAGAAA-TA----TCTTCAAATACTGGTTATGTTGCTTTAAaagaaatatcttcaaatactggttatgttgctttaaatattaagctcgattcttt
gi|12 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagtTTAATATTTAAAGCAACATAACCAGTA---TT--------T-----------atattaagctcgattcttt
gi|13 : ttgttgtttattgccctagcgacactgttttcccataaatgtcggctcacatcatcaataaattaagttacagattggaaaaaatatctgtccatatatgtatttatatatttgcacatatctaacgaccttgctaatactaaaggatggcggaattgacagagtataattatacgattgaatcggaagttttcgttataaaagaaatatcttcAACTGG-------CC---TA----TG-CACAACACCATCAGAAATTT------T-G-TG--ATCATGTTCAT-CAGC--AAAGC----------TCA-TTTG-CATCT-C-ACA-A---------TT-----A-CTGATCC-ATAAGT------ATA--GATT--TAA------------A-CAGCGA--TT------TATT--CA-CGTCTCAGTGAAA---TATCA-GC--TGTTAT--AAATATATGGAA-GGCAATCAA---AA-----AAACAT-TTTGC----CATTCATAAGCAA-GTTGTTTATTTCTTCATAAAAAAAA-gctcgattcttt
gi|14 : T-ATAAATGTAATATTTAG-CATGAATTGTGAG------TATCTGGATCATAGCTTGTAAAAATTACTGT----------TGTGTTA-CAT---CAAAA-----------------TCACTATTATTGCTGATATTTCAATTAGACCTAATCCTTGGAATAACCATT-AACTAAT-------------GG-TTTAGTC--TA--TTCA-AT------------C--TCAACTGTTTCTGAAATTTCTGGGCATCATTAAT---TA---Agcttatgtggttctggct
gi|15 : taacaaaaccccgataTT-AAAGCGACATAACCAGTA---TG--------T-----------TTGTAT--------A-AT-T---GAT-ATAAT----------AGATGTACATTG--AC------TATATGGATCATGTCTGCTGCAAATTATTAT----------TGT-TTCTTAG---AAAAAG-CAAGTAT--TTAAACTCGCTATAA-CGCCGCTATTTGAATTAGACACAATACATGGAATAAC--GT-A---AAT-------------GA-TTTAG----
gi|16 : taatgtaagtttacactgt-------TAA-CTTG-CATAT-T-A----------------------CTGATCA-GTAAATATAATATTA--ATTT--TAA------------AACA-C---------------T--CA--ATGAAAGAGAGA---TATCG-AC--TGTTAT--AACC-CATGAAA-GGATATGAG---AATTAACAAAAATGTTTAT----TATTCATAAACAA-GTTATTTATTTATTTATGAAAATAA-CATAATTCTTTAG-TTCTGGTTATACga
gi|17 : taatctcacatca--AGTTCAAA-CCCA-GTGACAAGAATTATACTAT-TTT------GTTCATTACCA-TGGCAACACTG----TTTTTTTCC---TGCAGGGCTCCATAAACCGTTTCTCATAT-CT--ATAAAATT-AGG--TTCCGAC-AAATAAAA----Aaat
gi|18 : TTCTCATAT-CT--ATAAAATT-AGG--TTCCGAC-AAATAAAA----Atcgatgaacgacgatgaaaatt
gi|18 : tGAACGACGATGAA---AATTCACGAAAATGTTTGT----CATTCATAAATAT-ATTGTTCATTTCTTTATGAAATAAA-CA----TCTTTAGTTACTGGTTATGTTGCTTTAAtcgatgaacgacgatgaaaattcacgaaaatgtttgtcattcataaatatattgttcatttctttatgaaataaacatctttagttactggttatgttgctttaa
gi|2 : tttctcatatctataaaattaggttccgacaaataaaaatcgatCATAACCATTA---TTACTACACTT-----------TTGA--TAACA-ACG-AC-T---GGT-ATAATTGTAATATTTAC-CATGAATAATTAC------TAACTAGATCCTGTATGTTGCAAAATATCAC----------TGT-TTATCGT---CAGAGT-CATACAT--TTAAACTTGCT---------GATATTTTTATTTGACCTGATCCATAGAATAAC--GT-C---ACT-------------GA-TTTAGTA--TA--T--A-ATCGCCGTTATCAACCGTAAAT-G-TTCGGAGATTTCAAGGCAGTTTCGGT---TA---AA--A---ACG-A-GGAAACGA-TTAAGTTTAAACTTAGATTG--ATA----------TGGTGAT-ATTC------CTACATGTCGTAGTTGTCTATAG-ATTAT-GAT-CCAGCA-------GACCCA--GGTTCAAA-TCCC-GTGAAAAGTA--ATGTT-T-GTT------TTTAGTTTCCC-TAGCAACACTAGTTTTTTTTT-AT---TACAGACCTCCTTAAACGGTTTCTCATATCCA--AAATAAAT-ATG--TTCCAACAAAAAGGAA----AA------A-----CTAAATTTTC-----------CACA-TATACATTTATA-----TCTTTCCAAATAGCTAGTGACCATTC----TAAAAC-----------TGAA--AG----------ATAAC-------GAAATTTG-------CCGATTA----TA-TACGACTGCGCCGGAAGTTA------T-A-CG--ACAATTTGAAA-CAAC--GAAACA-C----------------CACAT-C-AAA-A---------TT-----A-CTGATTA-GTTAAT------TTA--GAAT--TAA------------AACA-CTA--TT------TATT--TA-CGTTTAAGAGGGG---TATCGTGC--TGTCAT--AAAAGAAAC-AA-GGCCAGGAT---AATCCATAAATATG------------TCACAAACAA-GTTGTTTATTTCGTT
gi|20 : aATAACCAGCAATTTTGTCCA---T-----------TCGAATCAATATACA-AC-T---GGT-ATAATTGTAATAGTTAG-TATAAATTGTGTC------TAAATGGATCAATTCTGGTACGAAATACCGT----------TGT-gccg
gi|21 : CATACCAAACGACCGTTG----TAATAC-----------CTAA--GG----------AT-AC-------CTAAT-GG-------AAGAGTA----TA-AACGATTGAATTGGGCATAT------T-A-CG--ATAATTTTGAA-CAGT--GATACAGC-------TTA-TATG-CATAT-T---------------TT-----A-CTagtatcctctatatgaa
gi|22 : gtgCCAATCTTGTT-AT-ATTCAATGGTTTATG-AGC----TGAT-CATG--A-T-C-AA--CTGCCACTTGGGC--------------AA-TCCC-ATTATAAGAAATATACT-T-TTT------GTTCATTTCCC-ATGCAAAACTA----TTTTTT-
gi|23 : TA-TATGCATTTATACTGTATCCCTGCATATATCTAGCGACCGTTC----GGATAC-----------TGAA--G--------------------------AGTGG-------C-----------A-TACGATTGAACCGG-AATTT------T-
gi|24 : GAA-GGTGATGAA---AATTCATGAAAATGTTTGT----CATT
gi|28 : ttctcatatctataaaactaagttctgctaaaaaaaaaatcagtg-----------TGAA--GG----------ATGAC-------GGAATTGG-------CCGAGTA----TGTTACGATT
gi|3 : acaccaaT--------T-----------TCAAATCAATA-AAATAT-T---TGT-TTATTTGTAATATTTTG-TATAAATTGTGAA------TTTCTGGATCATGTTTGCTGCAAAATACAGC----------TGT-TCATCGT---TA--------------TTA---TCATT-CTAT----GATATTTGAATTAGTTCTAACCTGTAGAATAAC--GT-ACTAAAT-------------GA-TTAAGAAGTTA--T--A--T------------CCGTAAAC-G-CCCAGAAATTTCTGGGCATTATCGAT---TA---AT--T---CGG-A-GTAATTCG-AAAAGTTTAAACTTAGATTT--ATGCCGTTGATATTGAT-AA-ACTC------CTACATAGCATTGTGGT-TATAT-C-TGCAGATACTAG--CTCGGACGATCCG--AGTTCGAA-TCCC-ATAATAGG---TATAT
gi|3 : tagccagtttttatgttcATAAACGACTCCTTATAT-----AAACAGTTCAGA--TTCCAACAAA-TGAAA----AATTATATG-----T------GTC-----------TATA-TATGCATTTATT-----TCTTAGCAAATATATAGCGACTGCTC----TAATAA-----------TGAA--GG----------ATAAC-------GGAATTTG-------CCGAGTA----TA-AACGATTGAGTCGTAAAGTT------T-A-CG--ATAATTTCTAT-AAGT--GAAGCAAC-------TTA-TTTG-CACAT-T-AGA-T---------TT-----A-CTGATCA-GTTAAT------TT-----------A------------AACA-CAA--TT------CATTACTATCATTTAAGATATG---CATAG-GC--AGTTAT--AAATGCATTCAA-GGTAATAAG---AATTCACAAAAATGTTT-----------ATAAA------------------------AGAAA-AA----TCTTCAGATACTGGTTATGCCGCTTTAaaacgactccttatataaacagttcagattccaacaaatgaaaaattatatgtgtctatatatgcatttatttcttagcaaatatatagcgactgctctaataatgaaggataacggaatttgccgagtataaacgattgagtcgtaaagtttacgataatttctataagtgaagcaacttatttgcacattagatttactgatcagttaatttaaacacaattcattactatcatttaagatatgcataggcagttataaatgcattcaaggtaataagaattcacaaaaatgtttataaaagaaaaatcttcagatactggttatgccgcttta
gi|4 : tagccagtttttatgttctttcaaatcaataaaatatttgtttatttgtaatattttgtataaattgtgaatttctggatcatgtttgctgcaaaatacagctgttcatcgttattatcattctatgatatttgaattagttctaacctgtagaataacgtactaaatgattaagaagttatatccgtaaacgcccagaaatttctgggcattatcgattaattcggagtaattcgaaaagtttaaacttagatttatgccgttgatattgataaactcctacatagcattgtggttatatctgcagatactagctcggacgatccgagttcgaatcccataataggtatTA-AAA----T---GGT-TTAATTGTAATATTTAG-TATAAATTGAGAC------CATCTGGATCATGTCTGGTGCAAAATACCAT----------TGT-TTATTGT---AGAAAATCATGGAT--GAAAACTCACGATTATTGCCAATATTTGAATTAGACCTGACCCGTGGAATAAC--AT-A---AAT-------------GA-TTTAG----TA-----------------------GTAAAT-G-TCCGAAAATTTATGGGCATCATCAAG---TT---AA--T---CCG-G-GTAAGCAG--TAAG-TTAA--------------ACCGCCAATCTTTAT-AT-ATTC------CTATATAGCATGGTGGT-TATAT-C-TGC-GGA-TTGTCACTCTGTTGATCCG--AGTTCAAATTCTC-TTAACAGGAACTATATT-T-TTT------GTTCATT-----AAGCAACACTA-----TTTTT-CC---TATAGTGCTCCATAAATGGCTTTTAATATAAA--AAATACTT-AGG--TTCCAAAAAAATGAAG----AA------A-----
gi|4 : aagccttataacctgtaactatgtccttAAATTCCAT-TAGG--TCAGCAGT-------AAA-TTTG-CATAT-T-ACAGA---------TT-----A-CTGATCA-GTAAAT------TCA--GTTC--TAA----------------------CT------AATT--CA-CATTTAAGAGAGA---TATTG-GCAATGC-ATCAAAATGCATTGAA-GGCCATGAA---AATTCATGAA-----------------CATAAACAA-Gaaaaaaattccattaggtcagcagtaaatttgcatattacagattactgatcagtaaattcagttctaactaattcacatttaagagagatattggcaatgcatcaaaatgcattgaaggccatgaaaattcatgaacataaacaaggtactggtcatgccgctata
gi|5 : aagccttataacctgtaactatgtcctttaaaatggtttaattgtaatatttagtataaattgagaccatctggatcatgtctggtgcaaaataccattgtttattgtagaaaatcatggatgaaaactcacgattattgccaatatttgaattagacctgacccgtggaataacataaatgatttagtagtaaatgtccgaaaatttatgggcatcatcaagttaatccgggtaagcagtaagttaaaccgccaatctttatatattcctatatagcatggtggttatatctgcggattgtcactctgttgatccgagttcaaattctcttaacaggaactatattttttgttcattaagcaacactatttttcctatagtgctccataaatggcttttaatataaaaaatacttaggttccaaaaaaatgaagaaaaaaaCAGGAATCATCGGT---TA---AACAT---GCA-ATATAAGATG-T---GTATAAA---AG-TTTCCATACTG------TT-AT-ATTATTC------CCATGTAGCAAAATGGA-TATATCA-GGG-GAT--TGCCGCATGAGCGATCCGGTAGCT---A-CCACAGTGATAAATAATTTATT-T-TTTATTTTGGTTAATTTCAC-CAGCAACAC-------TTTTT-CCATTTACAGTTGTCCATATACGGCACTTGCTAT-CA--AAA----T-AGG--TTAAAACAAAACAAAAC---AA------A-----A------GAC-----------TA----------TCGTA-----TC--TGCATATATCTAGCAACCGTTCCCTGTTATCT-----------TTAAT-AG----------ATGATGCCATCAAGGATT---------CCTAATAC---CA-AAAGATTG---CGG-AATTTGAAGGGT-A-TGT-AAAATTGCAATGCAACAGGAAACAGTATGAATATCA-TCGGACATTT-T-ACG-ATAGTCTCCTTT-----AGCGGAACA-GCTAAT------TTACTGATTAGTAAATATAAATTTAAAATA-CGA--GT------TATT--CA-CGTGTAAGAAAGG---TATCG-GC-------C--AAAT--ATC------CTA--AATTTAATTCACGAAGATGCTTGT----CATTCGTAAACAA-GTTGTGTGTTTCTTTAT--------------------AGATACTGGTTATGGCGCTTTAAgtactggtcatgccgctata
gi|6 : ATAT-A-TGT-GGA-TTGTCATTTGGGAGATCCA--AGTTTGAA-TCCC-GTGACAAGAATTTTACT-TATTT------GTCCATTTCCCAGGGCAACATTT----TTTTTC-CC---TTCAGTGATCCATGAATGTTTTCTCATAT-TC--ATAAAATT-TAT--TTCCAACA-----AAA----AA------A-----T------GTCTATAATATAAATATA-TATGCA-TTA-A-----TCTTTGTACATATCTAGCAACAATTC----CTATAC-----------AGAT--GG----------AAGAA-------AGAACTGG-------CTCAGTA----TA-AACGATTTAATCAGAAGTTT------T-A-TG--ATGATTTTTAT-CAGC--AAAGCAGC-------TAATTTTG-CATATATAAGA-A---------TTACTAAA-CTGATAA-GTAAAT------ATA--AATT--TAA------------AACA-TGA--TT------TATT--CA-TGGGCAAGAGAGGTAATATCG-AC--TGTTAT--AAATCTATGGAG-GGCGATGA----AATTTCCAAAAATGTTTGTCTGACATTCATAAATAT-GTTGTTCATTTCTTTATAAAATAAA-CA----TCTTTAGTTACTGGTTATGCCGCtg
gi|7 : TA----TGTTTT-CC---TA----GCAACATTAACGGCTTCTGATAT------------T-AGA--T-----CAAAATGAAA----GT------T-----C------TTCTT---------CATA-TATGCATTTATA-----TCTTTCGACATATTTAGTGAGCGTTC----TAATAC-----------TGAA--AT----------ATGAC-------TGAATTGA-------CTGAATA----TA-AATGATTGAATCGGACATTT------C-AGTG--ATAATTTCAGT-TACC--GAAATAGC-------TAC-TTTG-CATGT-T-AGA-A---------TT-----A-GTAATCATGT---T------TTA--GATT--TTA------------AACA-CGA--AT------TATT--TA-CTTTTAAATGACG---TATCA-GC--TGTTTT--TCATGTATCGAA-GACAATGAG---AATTCGCAAGATTGTTTGC----CATTCATAAACCA-TTTGTTTCTTTCTTTATGAAAGAAA-TA----TCT
gi|8 : AAA----AA------A-----T------GTC-----------CATGGTATACATTTATA-----TATGTATACATATCTATTGACTGTTC----TGATACAGAAGGATGACTGAATTGGTTGAATATATACGAT-------TGAATCAGGAATAAGCCGAGAA----TA-TAGGATTGAAACGTAATTTT------TTA-AG--ATAATTTCTGT-CAGC--GAAGCAGC-------TAA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCG-GTAAAT------TTA--GATT--TAA------------AATA-CAG--TTTACCGGTATT--AA-CATTTAA-ACAGG---TTTCT-GT--CTTTATC-AAATGgatgtcgcttta
gi|8 : tAAATGTTTGT----CATTCATAAACA----CGCTTCTTTCTTTATAAAAGAGATTA----TGTTCCAATACTGGTTATGCCGATTTtttgtcattcataaacacgcttctttctttataaaagagattatgttccaatactggttatgccgatttc
gi|9 : taaaaaatgtccatggtatacatttatatatgtatacatatctattgactgttctgatacagaaggatgactgaattggttgaatatatacgattgaatcaggaataagccgagaatataggattgaaacgtaattttttaagataatttctgtcagcgaagcagctaatttgcatattagaattactgatcggtaaatttagatttaaaatacagtttaccggtattaacatttaaacaggtttctgtctttatcAATT-AAAAATTCCAACAAAGTGAAATAAAAA------A-----TT-----GTC-----------CATA-TATGCAATTATA-----TCTATGCACATATCAAGCGATCGTTC----TAATCA-----------TGAA--GG----------GTTTC-------TGAATTGG-------CCGAGTA----TA------------------------------------TAATTTCCAT-CAGC--GAAGCTGC-------TTA-TTTG-CATAT-T-AGA-A---------TT-----A-CTGATCA-GTAA--------TGA--GATT--TAA------------CGCA-CGA--TT------TATT--CA-CGTTTAAGAGAGG---TATCG-AC--TGTTAT--AATTGCATCAAA-GGCCATGAG---AATTAACGAAAATGTTTGT----CATTCATAAACAATGTT-TTTCTTTATTTATGAAAGAAA-CA----TTTTCAGATACTTGTTATGCCGCTTTc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTATTGGCAAAATCAGCCAAATATTTGCCTTAAACCATTAATAACACACATATTTAATACAAGTACGTCAAAGACATGTACAAACATATTATATTATACACTTTATACAAATACAATTACAGAC
Unaligned ( gi|25 ): TTAGACCTGACATGTGAAAAAACATCAAAGGTTTAGTCTGTCAGATGTTGATATATCTGTAAATGTTTTAAAATTTCC
Unaligned ( gi|26 ): CCGAGTATGTGATAAGGTTTAAACTAAAAATTTATATGGTTGATAGCATAGTGGTCATATCTTTGGATTATAACTCT
Unaligned ( gi|27 ): AGCAAATCAGAATATCGCACTCTTTGTACATATATAGCAACCATTCTTTGTTACCTTTAATA
Unaligned ( gi|29 ): AAACAAGTAGTAAAAAGAAGTATAATTGTCCCGGGA